Citrus Sinensis ID: 048108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEEcc
Coil and Loop (DISEMBL)
NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKefnpdlpniddyFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMlhpdknssvaADGAFKLIRSAnnvltdpgkrkafdnrirlnkvklmscsccrpqgagdnnsprastykanntscprkyrAKAIFCQCqgrrkivilrnc
Flexible Loop (DISEMBL)
NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRsannvltdpgkrkafdnrirlNKVKLMSCSCCRpqgagdnnsprastykanntscprkyrakaifcqcqgrrkivilrnc
Low Complexity Region (SEG)
NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC
Disordered region (IsUnstruct)
******NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPD***SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCR*********************CPRKYRAKAIFCQCQGRRKIVIL***
Disordered Region (DISOPRED)
*W*****LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD*PNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF*******************************TYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC
Disordered Region (DISEMBL)
NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC
Disordered Region (DISPRO)
*WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL***********************ASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9HGM9	476	DnaJ homolog subfamily C	yes	no	0.564	0.228	0.297	2e-08
P47442	601	DnaJ-like protein MG200 O	yes	no	0.352	0.113	0.434	4e-08
O13633	403	Uncharacterized J domain-	no	no	0.310	0.148	0.475	1e-07
Q7ZXQ8	371	DnaJ homolog subfamily B	N/A	no	0.321	0.167	0.428	3e-07
P50027	332	DnAJ-like protein slr0093	N/A	no	0.404	0.234	0.385	3e-07
Q7VQL3	377	Chaperone protein DnaJ OS	yes	no	0.341	0.175	0.411	8e-07
Q5R6H3	379	DnaJ homolog subfamily B	yes	no	0.310	0.158	0.442	1e-06
Q8TBM8	379	DnaJ homolog subfamily B	yes	no	0.310	0.158	0.442	1e-06
Q149L6	379	DnaJ homolog subfamily B	yes	no	0.310	0.158	0.442	1e-06
Q0IIE8	379	DnaJ homolog subfamily B	no	no	0.310	0.158	0.442	1e-06

>sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 26  LQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIK 85
           L+  + A++ +++A E +    N+       ++      +   YKIL ++    DI  IK
Sbjct: 308 LEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSKRKDHYKILGVSKEATDIE-IK 366

Query: 86  KQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRLN 135
           K ++K+AL+ HPDKN+  + A+  FK +  A  +L+DP  R+ FD+ + L 
Sbjct: 367 KAYRKLALVYHPDKNAGNLEAEARFKEVGEAYTILSDPESRRRFDSGVDLE 417

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P47442|DNAJM_MYCGE DnaJ-like protein MG200 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG200 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 61  LSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120
           ++E K   Y++L IT P  D S IKK F+K+A   HPD+N++  A   F  I  AN+VL+
Sbjct: 1   MAEQKRDYYEVLGIT-PDADQSEIKKAFRKLAKKYHPDRNNAPDAAKIFAEINEANDVLS 59

Query: 121 DPGKRKAFD 129
           +P KR  +D
Sbjct: 60  NPKKRANYD 68

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|O13633|YNF5_SCHPO Uncharacterized J domain-containing protein C17A3.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi041 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y+IL +     D   IKK +KK+AL LHPDKN + +AD AFK++  A  VL+DP  R  +
Sbjct: 115 YEILDLKKTCTDTE-IKKSYKKLALQLHPDKNHAPSADEAFKMVSKAFQVLSDPNLRAHY 173

Query: 129 D 129
           D
Sbjct: 174 D 174

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7ZXQ8|DJB14_XENLA DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 67  TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRK 126
           T Y++L ++ P      +KK ++K+AL  HPDKN +  A  AFK I +A  VL++P KRK
Sbjct: 102 TYYEVLGVS-PDAGEEDLKKAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRK 160

Query: 127 AFD 129
            +D
Sbjct: 161 QYD 163

May act as a co-chaperone.

Xenopus laevis (taxid: 8355)

>sp|P50027|DNAJH_SYNY3 DnAJ-like protein slr0093 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0093 PE=4 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDPGKRKA 127
           Y+IL +T    +   IKKQF+K+AL  HPDKN    AA+  FK I  A  VL+DP KR+ 
Sbjct: 10  YQILGVTKTASEAE-IKKQFRKLALKYHPDKNPGDKAAEEKFKEISEAYEVLSDPEKRQK 68

Query: 128 FDNRIRLNKVKLMSCSCCRPQGA 150
           +D   +  +    + +  +P G+
Sbjct: 69  YD---QFGRYWQQAGTAGQPSGS 88

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q7VQL3|DNAJ_BLOFL Chaperone protein DnaJ OS=Blochmannia floridanus GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDP 122
            KS  Y+IL ++    D   IKK +K++A+  HPD+N   V+A+  FK I+ A  VL++P
Sbjct: 2   VKSDYYEILGVSK-NADEREIKKSYKRLAMKFHPDRNPGDVSAESKFKEIKEAYEVLSNP 60

Query: 123 GKRKAFDN 130
            KR A+D 
Sbjct: 61  EKRSAYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Blochmannia floridanus (taxid: 203907)

>sp|Q5R6H3|DJB14_PONAB DnaJ homolog subfamily B member 14 OS=Pongo abelii GN=DNAJB14 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y++L +T    D   +KK ++K+AL  HPDKN +  A  AFK I +A  VL++P KRK +
Sbjct: 110 YEVLGVTKDAGD-EDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQY 168

Query: 129 D 129
           D
Sbjct: 169 D 169

May act as a co-chaperone.

Pongo abelii (taxid: 9601)

>sp|Q8TBM8|DJB14_HUMAN DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y++L +T    D   +KK ++K+AL  HPDKN +  A  AFK I +A  VL++P KRK +
Sbjct: 110 YEVLGVTKDAGD-EDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQY 168

Query: 129 D 129
           D
Sbjct: 169 D 169

May act as a co-chaperone.

Homo sapiens (taxid: 9606)

>sp|Q149L6|DJB14_MOUSE DnaJ homolog subfamily B member 14 OS=Mus musculus GN=Dnajb14 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y++L +T    D   +KK ++K+AL  HPDKN +  A  AFK I +A  VL++P KRK +
Sbjct: 110 YEVLGVTKDAGDED-LKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQY 168

Query: 129 D 129
           D
Sbjct: 169 D 169

May act as a co-chaperone.

Mus musculus (taxid: 10090)

>sp|Q0IIE8|DJB14_BOVIN DnaJ homolog subfamily B member 14 OS=Bos taurus GN=DNAJB14 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y++L +T    D   +KK ++K+AL  HPDKN +  A  AFK I +A  VL++P KRK +
Sbjct: 110 YEVLGVTKDAGD-EDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQY 168

Query: 129 D 129
           D
Sbjct: 169 D 169

May act as a co-chaperone.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
357512127	1084	Chaperone protein dnaJ [Medicago truncat	0.761	0.135	0.395	1e-16
255564086	753	conserved hypothetical protein [Ricinus	0.870	0.223	0.351	2e-16
168046221	184	predicted protein [Physcomitrella patens	0.585	0.614	0.396	6e-16
255542478	1131	protein with unknown function [Ricinus c	0.626	0.106	0.442	2e-15
147772268	723	hypothetical protein VITISV_018091 [Viti	0.906	0.242	0.348	3e-15
255559889	1130	protein with unknown function [Ricinus c	0.626	0.107	0.442	3e-15
359485819	656	PREDICTED: uncharacterized protein LOC10	0.906	0.266	0.348	3e-15
298204992	804	unnamed protein product [Vitis vinifera]	0.772	0.185	0.331	6e-15
359487946	1169	PREDICTED: uncharacterized protein LOC10	0.569	0.094	0.406	6e-15
359473614	1168	PREDICTED: uncharacterized protein LOC10	0.611	0.101	0.398	7e-15

>gi|357512127|ref|XP_003626352.1| Chaperone protein dnaJ [Medicago truncatula] gi|124360144|gb|ABN08160.1| Heat shock protein DnaJ [Medicago truncatula] gi|355501367|gb|AES82570.1| Chaperone protein dnaJ [Medicago truncatula]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 15/162 (9%)

Query: 13  AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH-----QLSETKST 67
           A KA+  AE+  K  +   A+K  K A+   P++ NI    TAC VH     +LS +   
Sbjct: 8   ALKAKQIAEDRMKSGDFVGALKFAKKAQRLFPEIQNITQILTACEVHCAAQNKLSMSDMD 67

Query: 68  LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA 127
            Y IL +TD   D + IKKQ+KK+AL+LHPDKN S  A+ AFKLI  AN VL+D  KR  
Sbjct: 68  WYGIL-LTDKFTDEATIKKQYKKLALLLHPDKNKSAGAEAAFKLIVDANRVLSDQTKRSL 126

Query: 128 FDNRIRLNKVKLMSCSCCRPQGA---GDNNSPRASTYKANNT 166
           ++ +I     +L+  +   PQG     D N+   S Y  ++T
Sbjct: 127 YNAKIS----RLVGITA--PQGPPYQADRNNYNTSFYSHSHT 162

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564086|ref|XP_002523041.1| conserved hypothetical protein [Ricinus communis] gi|223537724|gb|EEF39345.1| conserved hypothetical protein [Ricinus communis]

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 14/182 (7%)

Query: 10  KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK---- 65
           K  A KA+  +E+ F  +++  A +    A+   P L  +    +   V+  +E K    
Sbjct: 5   KDEAAKAKQISEKKFLAKDLAGAKRFALKAQNLYPGLEGVQHLVSTLDVYISAENKINGE 64

Query: 66  STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125
           S  Y IL  TDPQ D   ++KQ++K+ALMLHPDKN S+ ADGAFKLI  A ++L+D  KR
Sbjct: 65  SDWYGILG-TDPQADDETVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKTKR 123

Query: 126 KAFDNRIRLNKVKL-----MSCSCCRPQGAGDNNSPRASTYKANNT----SCPRKYRAKA 176
            A+D + +  K           S   P+ +G +N  R+ST    +T    S PR   + A
Sbjct: 124 VAYDQKRKNVKASQKVSNPAGGSSAAPESSGFSNFTRSSTKTQKSTQTHKSTPRSSHSSA 183

Query: 177 IF 178
            F
Sbjct: 184 TF 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168046221|ref|XP_001775573.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673128|gb|EDQ59656.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 16  ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK-------STL 68
           AR+ AE+ F +Q+   A K +  A++  P L  +  +     VH +S+TK       +  
Sbjct: 1   AREIAEKKFTMQDFAGAKKFIHKAQQLYPALEGVSQWLAVIEVHIVSQTKVGSSNNETDW 60

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y IL + +P  D S IKKQ++K+AL LHPDKN S+ A+ AFK++  A  VL+D GKR   
Sbjct: 61  YGILQV-EPTSDDSTIKKQYRKLALQLHPDKNKSMGAEAAFKMVGEAFGVLSDKGKRGLH 119

Query: 129 D 129
           D
Sbjct: 120 D 120

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542478|ref|XP_002512302.1| protein with unknown function [Ricinus communis] gi|223548263|gb|EEF49754.1| protein with unknown function [Ricinus communis]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 77/131 (58%), Gaps = 10/131 (7%)

Query: 10  KLAAEKARDAAEEYFKLQNID--MAIKTLKAAKEFNPDLPNIDDYFTACRVH-----QLS 62
           K  A +A++ AE+  K+QN D   A +    A++  PDL NI      C VH     +L+
Sbjct: 7   KEEAFRAKELAEK--KMQNGDYVAARRIALKARQLYPDLDNISQLLMVCEVHCSAQNKLN 64

Query: 63  ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDP 122
            ++   Y IL I +   D +VIKKQF+K+AL LHPDKN    A+ AFKLI  AN VLTDP
Sbjct: 65  GSEMDWYGILQI-EKFSDEAVIKKQFRKLALSLHPDKNKFSGAEAAFKLIGEANRVLTDP 123

Query: 123 GKRKAFDNRIR 133
            KR A+D + R
Sbjct: 124 SKRPAYDMKCR 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772268|emb|CAN67351.1| hypothetical protein VITISV_018091 [Vitis vinifera]

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 99/198 (50%), Gaps = 23/198 (11%)

Query: 8   LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK-- 65
           L K  A +A++ AE+ F  +N   A      A+   PDL  I        V+  SE K  
Sbjct: 3   LKKEEALRAKENAEKQFAEKNFAGAKNFALKAQSVCPDLEGISQMVATFEVYIASEVKVN 62

Query: 66  --STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
             +  Y IL +  P  D + +KKQ++K+A++LHPDKN +V ADGAFKL+  A  +L+D  
Sbjct: 63  GETDYYSILGLL-PTADKATVKKQYRKLAVLLHPDKNKTVGADGAFKLVSEAWTLLSDSA 121

Query: 124 KRKAFD-NRIRLNKVKLMSCSCCRPQGAG----DN--NSP----RASTYKANNTSCP--- 169
           KR ++D  R +L    ++  S      AG    DN  +SP    R  T+    TSC    
Sbjct: 122 KRSSYDLRRSQLLSSAVVQRSSASAHTAGFTGFDNCSHSPVTHTRLDTFWTVCTSCKVQY 181

Query: 170 ---RKYRAKAIFCQ-CQG 183
              RKY  K + C+ C+G
Sbjct: 182 EYLRKYLNKRLSCKNCRG 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559889|ref|XP_002520963.1| protein with unknown function [Ricinus communis] gi|223539800|gb|EEF41380.1| protein with unknown function [Ricinus communis]

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 77/131 (58%), Gaps = 10/131 (7%)

Query: 10  KLAAEKARDAAEEYFKLQNID--MAIKTLKAAKEFNPDLPNIDDYFTACRVH-----QLS 62
           K  A +A++ AE+  K+QN D   A +    A++  PDL NI      C VH     +L+
Sbjct: 7   KEEAFRAKELAEK--KMQNGDYVAARQIALKARQLYPDLDNISQLLMVCEVHCSAQNKLN 64

Query: 63  ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDP 122
            ++   Y IL I +   D +VIKKQF+K+AL LHPDKN    A+ AFKLI  AN VLTDP
Sbjct: 65  GSEMDWYGILQI-EKFSDEAVIKKQFRKLALSLHPDKNKFSGAEAAFKLIGEANRVLTDP 123

Query: 123 GKRKAFDNRIR 133
            KR A+D + R
Sbjct: 124 SKRPAYDMKCR 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485819|ref|XP_002269946.2| PREDICTED: uncharacterized protein LOC100240890 [Vitis vinifera]

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 99/198 (50%), Gaps = 23/198 (11%)

Query: 8   LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK-- 65
           L K  A +A++ AE+ F  +N   A      A+   PDL  I        V+  SE K  
Sbjct: 3   LKKEEALRAKENAEKQFAEKNFAGAKNFALKAQSVCPDLEGISQMVATFEVYIASEVKVN 62

Query: 66  --STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
             +  Y IL +  P  D + +KKQ++K+A++LHPDKN +V ADGAFKL+  A  +L+D  
Sbjct: 63  GETDYYSILGLL-PTADKATVKKQYRKLAVLLHPDKNKTVGADGAFKLVSEAWTLLSDSA 121

Query: 124 KRKAFD-NRIRLNKVKLMSCSCCRPQGAG----DN--NSP----RASTYKANNTSCP--- 169
           KR ++D  R +L    ++  S      AG    DN  +SP    R  T+    TSC    
Sbjct: 122 KRSSYDLRRSQLLSSAVVQRSSASAHTAGFTGFDNCSHSPVTHTRLDTFWTVCTSCKVQY 181

Query: 170 ---RKYRAKAIFCQ-CQG 183
              RKY  K + C+ C+G
Sbjct: 182 EYLRKYLNKRLSCKNCRG 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204992|emb|CBI34299.3| unnamed protein product [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 23/172 (13%)

Query: 25  KLQNIDM--AIKTLKAAKEFNPDLPNIDDYFTACRVH-----QLSETKSTLYKILAITDP 77
           K+Q+ D   A +  + A++  PDL NI    T C VH     ++  T+   Y IL + + 
Sbjct: 18  KMQSGDFIGARRIAQRAQQLFPDLENISQLLTVCDVHCSAQNKIYGTEMDWYGILKV-EQ 76

Query: 78  QVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKV 137
             D ++IKKQ++K+AL+LHPDKN    A+ AFKLI  AN +L+D GKR A+D + R++  
Sbjct: 77  AADDAIIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRILSDQGKRSAYDMKYRVSL- 135

Query: 138 KLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVI 189
                          + +P+   ++ N  S  RK        +CQ  +K  I
Sbjct: 136 --------------KHTAPKPPPHQLNRNSFVRKQYGTQPVLRCQTCQKSFI 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487946|ref|XP_002266568.2| PREDICTED: uncharacterized protein LOC100255461 [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 8/118 (6%)

Query: 25  KLQNIDM--AIKTLKAAKEFNPDLPNIDDYFTACRVH-----QLSETKSTLYKILAITDP 77
           K+Q+ D   A +  + A++  PDL NI    T C VH     ++  T+   Y IL + + 
Sbjct: 18  KMQSGDFIGARRIAQRAQQLFPDLENISQLLTVCDVHCSAQNKIYGTEMDWYGILKV-EQ 76

Query: 78  QVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLN 135
             D ++IKKQ++K+AL+LHPDKN    A+ AFKLI  AN +L+D GKR A+D + R++
Sbjct: 77  AADDAIIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRILSDQGKRSAYDMKYRVS 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473614|ref|XP_002271091.2| PREDICTED: uncharacterized protein LOC100257476 [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 5/123 (4%)

Query: 13  AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK----STL 68
           A +A++ AE+ F  ++I  A K    A+   P L  +        VH  +E K    +  
Sbjct: 387 ATRAKEIAEKKFIARDIAGAKKLALKAQNLFPGLDGLPQMLATLDVHISAENKINGEADW 446

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y IL + +PQ D   ++KQ++K+ALMLHPDKN S+ ADGAFKLI  A ++L+D  KR A+
Sbjct: 447 YGILGV-NPQADDDTVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKTKRIAY 505

Query: 129 DNR 131
           D +
Sbjct: 506 DQK 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2114880	1165	AT3G04980 [Arabidopsis thalian	0.523	0.086	0.415	1.7e-15
TAIR|locus:2122950	558	AT4G19570 [Arabidopsis thalian	0.839	0.290	0.300	6.7e-15
TAIR|locus:2169170	431	AT5G37380 [Arabidopsis thalian	0.642	0.287	0.356	1.7e-14
TAIR|locus:2122970	345	AT4G19590 [Arabidopsis thalian	0.450	0.252	0.466	3.1e-14
TAIR|locus:2081046	673	AT3G06340 [Arabidopsis thalian	0.611	0.175	0.379	1.8e-13
TAIR|locus:2151714	241	AT5G37750 [Arabidopsis thalian	0.849	0.680	0.289	5.6e-13
TAIR|locus:2182508	287	AT5G37440 [Arabidopsis thalian	0.621	0.418	0.325	2.1e-12
TAIR|locus:2065393	311	AT2G01710 "AT2G01710" [Arabido	0.880	0.546	0.304	6.3e-12
TAIR|locus:2040110	656	AT2G25560 [Arabidopsis thalian	0.772	0.227	0.298	1.9e-11
TAIR|locus:2180024	884	AT5G18750 [Arabidopsis thalian	0.611	0.133	0.354	3.7e-11

TAIR|locus:2114880 AT3G04980 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 44/106 (41%), Positives = 59/106 (55%)

Query:    32 AIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK----STLYKILAITDPQVDISVIKKQ 87
             A K +  A+   P+L NI    T C VH  +  K       Y +L +  P  D   IKKQ
Sbjct:     9 AHKFVTKAQRLFPNLENIVQMMTICDVHSSAIKKIKGLDDWYGVLQV-QPYADADTIKKQ 67

Query:    88 FKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR 133
             ++K+AL+LHPDKN    A+ AFKL+  AN +L+D  KR  +DNR R
Sbjct:    68 YRKLALLLHPDKNKFAGAEAAFKLVGEANRLLSDQIKRSQYDNRYR 113

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2122950 AT4G19570 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 52/173 (30%), Positives = 91/173 (52%)

Query:    10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK---- 65
             K  A++A D AE+     + + A +  K A    P+L  ++       V+  +  K    
Sbjct:     5 KEEAKRALDIAEKKLSKNDYNRAKRYAKKAHRMYPNLVGLEQVLIMIDVYISATNKINGE 64

Query:    66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125
             +  Y++L + DP  D   +KK+++K+AL+LHPDKN    A+GAFKLI  A ++L+D  +R
Sbjct:    65 ADWYRVLGV-DPLADDEAVKKRYRKLALLLHPDKNRFTGAEGAFKLILEAWDLLSDKSQR 123

Query:   126 KAFDNRIRLNKVKLMSCSCCRPQGAG-----DNNSPRASTYKANNTSCPRKYR 173
              ++D + + N+VK  +    +P+ +      +++ P AS+Y       PR  R
Sbjct:   124 SSYDQKRKSNQVKQRTSGMQKPKRSSTPKPTESDKP-ASSYGPTPPPEPRPKR 175

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2169170 AT5G37380 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 46/129 (35%), Positives = 72/129 (55%)

Query:    13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKST----L 68
             A +A++ AE  FK+++I  A K    A+   P++  +        V+  +E K       
Sbjct:     8 ATRAKEIAENKFKMKDIAGAKKFALKAQNLYPEIEGVSQMLATLDVYIAAENKVNEDVDW 67

Query:    69 YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
             Y IL  + P+ D   +K++++K+ALMLHPDKN S+ A+GAFK +  A   L+D  KR A+
Sbjct:    68 YGILNAS-PRDDDETLKRKYRKLALMLHPDKNKSIGAEGAFKHVSEAWKFLSDKEKRAAY 126

Query:   129 DNRIRLNKV 137
             D R  L+ V
Sbjct:   127 DRRKSLHSV 135

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2122970 AT4G19590 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.1e-14, P = 3.1e-14
 Identities = 42/90 (46%), Positives = 61/90 (67%)

Query:    49 IDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA 108
             ID Y +A     +S  +S  Y IL + DP  D  V+KKQ+K++AL+LHPDKN+   A+GA
Sbjct:    40 IDVYISAGNT--ISGGESDWYGILGV-DPLADEEVVKKQYKRLALLLHPDKNNCEGAEGA 96

Query:   109 FKLIRSANNVLTDPGKRKAFDNRIRLNKVK 138
             FKL+ +A  +L+D  KR A+D + +LN+VK
Sbjct:    97 FKLVLAAWCLLSDKVKRIAYDQKRKLNEVK 126

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2081046 AT3G06340 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 47/124 (37%), Positives = 65/124 (52%)

Query:    13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH-----QLSETKST 67
             A +A+D AE   K  +   A K    A++ +  L NI      C VH     +L  T+  
Sbjct:     8 ALRAKDLAEGLMKKTDFTAARKLAMKAQKMDSSLENISRMIMVCDVHCAATEKLFGTEMD 67

Query:    68 LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA 127
              Y IL +     D+ +IKKQ+K++AL+LHPDKN    A+ AFKLI  A  +L D  KR  
Sbjct:    68 WYGILQVEQIANDV-IIKKQYKRLALLLHPDKNKLPGAESAFKLIGEAQRILLDREKRTL 126

Query:   128 FDNR 131
              DN+
Sbjct:   127 HDNK 130

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2151714 AT5G37750 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 51/176 (28%), Positives = 86/176 (48%)

Query:    21 EEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF-TACRVHQLSET--KSTLYKILAITDP 77
             EE  ++    ++ K    A +F    PN+D  + T   V+       +S  Y +L + DP
Sbjct:    21 EEATQIVEKKLSEKDYVGAMKFINLFPNLDGRWNTMIDVYICGSNVGESDWYGVLGV-DP 79

Query:    78 QVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKV 137
               D   +KK +K++AL+LHPDKN    A+GAFKL+  A  +L+D  +R ++D R + +K 
Sbjct:    80 LSDDETVKKHYKQLALLLHPDKNKCYGAEGAFKLVSEAWCLLSDKVQRSSYDQRRKNSKQ 139

Query:   138 KLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRNC 193
                S    +P+    +   ++ T+    T C R  + K  F +     K ++  NC
Sbjct:   140 GKSS----KPKATDSSKQRKSRTFW---TMC-RSCKTKGEFLRHWNLNKAILCPNC 187

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2182508 AT5G37440 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 42/129 (32%), Positives = 69/129 (53%)

Query:    65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124
             +S  Y +L + DP  D   +KK +K++AL+LHPDKN    A+GAFKL+  A  +L+D  +
Sbjct:    72 ESDWYGVLGV-DPLSDDETVKKHYKQLALLLHPDKNKCYGAEGAFKLVSEAWCLLSDKLQ 130

Query:   125 RKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGR 184
             R ++D R + +K    S    +P+ A  +   ++ T+    T C R  + K  F +    
Sbjct:   131 RSSYDQRRKKSKQGKSS----KPKAADSSKQRKSRTFW---TMC-RSCKTKGEFLRHWNL 182

Query:   185 RKIVILRNC 193
              K ++  NC
Sbjct:   183 NKAILCPNC 191

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2065393 AT2G01710 "AT2G01710" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 56/184 (30%), Positives = 86/184 (46%)

Query:    13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTL---- 68
             AE+    AE+  + ++++ + +    A+E  P L   D       V   S  ++ +    
Sbjct:    11 AERLLGIAEKLLESRDLNGSKEFAILAQETEPLLEGTDQILAVVDVLLSSAPENRIKNQP 70

Query:    69 --YKILAI---TDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
               YKIL I   T+   D  +IKKQ++++AL+LHPDKN    AD AF+ +  A  VL+ P 
Sbjct:    71 NWYKILQIEDLTESSTDNDLIKKQYRRLALLLHPDKNRFPFADQAFRFVLDAWEVLSTPT 130

Query:   124 KRKAFDNRIRL--NKVKLMSCSCCRPQGAGDNNSP--RASTYKANNTSCPRKYRAKAIFC 179
             K+  FD  + L   KV L +    +     +  S    A  Y  +    PR Y+   I C
Sbjct:   131 KKSQFDGDLNLIFTKVNLNTQKSKKKTTTNEKMSTFWTACPYCYSLHEYPRVYQEYCIRC 190

Query:   180 Q-CQ 182
             Q CQ
Sbjct:   191 QNCQ 194

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0007067 "mitosis" evidence=RCA

TAIR|locus:2040110 AT2G25560 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 46/154 (29%), Positives = 74/154 (48%)

Query:    10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSET----K 65
             K  A +AR+ A+  F   +   A K    A+   P+L  I        VH  ++      
Sbjct:     5 KEEATRAREIAKRKFLANDFAGARKFALKAQFLYPELDGIAQMVATFDVHLSAQNIIYGD 64

Query:    66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125
                Y +L + +P+ D  +++K+++K+A+MLHPD+N SV A+ AFK +  A  V +D  KR
Sbjct:    65 VDHYGVLGL-NPEADDEIVRKRYRKLAVMLHPDRNKSVGAEEAFKFLSQAWGVFSDKAKR 123

Query:   126 KAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRAS 159
               +D +  +   K    S  RP   G     +AS
Sbjct:   124 ADYDLKRNVGLYKGGGASSSRPATNGFQKVTKAS 157

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2180024 AT5G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 44/124 (35%), Positives = 65/124 (52%)

Query:    13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI-DDYFTACRVH----QLSETKST 67
             A +A+D AE++    +   A +    A++ +  L ++       C VH    + S  ++ 
Sbjct:     7 ALRAKDLAEDWMSKSDFTTARRIAIKAQKMDATLESVVARMIMVCDVHCAALEKSGDETD 66

Query:    68 LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA 127
              YKIL + +   D + IKKQ+KK+AL LHPDKN    A+ AFK I  A  VL D  KR+ 
Sbjct:    67 WYKILQV-EQTADENTIKKQYKKLALHLHPDKNKLPGAESAFKTIGEAQRVLLDKDKRRF 125

Query:   128 FDNR 131
              D R
Sbjct:   126 HDMR 129

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	JGI17769	hypothetical protein (184 aa)
		(Physcomitrella patens)
Predicted Functional Partners:
	JGI73185	hypothetical protein (243 aa)			•						0.525
	JGI38771	hypothetical protein (63 aa)			•						0.525
	JGI19268	hypothetical protein (81 aa)			•						0.525
	JGI145400	hypothetical protein (104 aa)			•						0.524
	JGI171101	hypothetical protein (262 aa)			•						0.523
	JGI39180	hypothetical protein (54 aa)			•						0.522
	JGI17229	hypothetical protein (204 aa)			•						0.519
	JGI167873	hypothetical protein (162 aa)			•						0.517
	JGI187874	hypothetical protein (116 aa)			•						0.515
	JGI161703	hypothetical protein (195 aa)			•						0.515

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-15
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	5e-11
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	9e-11
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-10
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-09
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-09
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	4e-09
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	5e-09
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	8e-09
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-08
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	6e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-07
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-07
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	4e-07
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	7e-07
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	9e-07
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-06
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-06
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	9e-06
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-05
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-05
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-05
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-05
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-05
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-05
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	3e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	4e-05
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	6e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-04
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-04
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	3e-04
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	6e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	6e-04

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 65.6 bits (161), Expect = 7e-15
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 67  TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKR 125
             Y+IL +         IKK ++K+AL  HPDKN    AA+  FK I  A  VL+DP KR
Sbjct: 1   DYYEILGV-PRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKR 59

Query: 126 KAFD 129
             +D
Sbjct: 60  AIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 55.7 bits (135), Expect = 5e-11
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 67  TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGK 124
             Y+IL +      +  IKK ++K+AL  HPDKN      A+  FK I  A  VL+DP K
Sbjct: 2   DYYEILGVP-RDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 59.1 bits (144), Expect = 9e-11
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 84  IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK ++K+A   HPD+N    A+  FK I  A  VL+DP KR  +D
Sbjct: 17  IKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 67  TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA-ADGAFKLIRSANNVLTD 121
             Y IL +  P      IKK ++K+AL  HPDKN     A+  FK I  A  VL+D
Sbjct: 1   DYYDILGV-PPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 65  KSTLYKILAITDPQVDISV--IKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTD 121
           K   Y+IL ++    D S   IKK ++K+A   HPD+N     A+  FK I  A  VL+D
Sbjct: 3   KRDYYEILGVS---KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSD 59

Query: 122 PGKRKAFD 129
           P KR A+D
Sbjct: 60  PEKRAAYD 67

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDP 122
            K   Y++L ++        IKK ++K+A+  HPD+N     A+  FK I+ A  VL+DP
Sbjct: 2   AKRDYYEVLGVSR-NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60

Query: 123 GKRKAFD 129
            KR A+D
Sbjct: 61  QKRAAYD 67

Length = 371

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 84  IKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL 134
           IKK ++K+A  LHPD N    AA+  FK +  A++VL+DP KRK +D   RL
Sbjct: 26  IKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77

Length = 392

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 64  TKSTLYKILAITDPQVDISV--IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD 121
           T    Y+IL ++    D SV  IKK ++K+A+  HPDKN    A+  FK I  A  VL+D
Sbjct: 3   TTRDYYEILGLSK---DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSD 59

Query: 122 PGKRKAFD 129
             KR  +D
Sbjct: 60  AEKRAQYD 67

Length = 377

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 54.1 bits (129), Expect = 8e-09
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124
           K   Y++L I D   D   IKK F+K+A   HPD+N +  A   F  I  AN+VL++P K
Sbjct: 1   KRDYYEVLGI-DRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKK 59

Query: 125 RKAFD 129
           R  +D
Sbjct: 60  RANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKA 127
           YK+L +       + IKK ++K+A   HPD N     A+  FK I  A +VL+D  KRK 
Sbjct: 12  YKVLGVPK-DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKE 70

Query: 128 FDN 130
           +D 
Sbjct: 71  YDE 73

Length = 389

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query: 84  IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK FKK+A   HPD N S  A+  FK I  A  VL+DP KR+ +D
Sbjct: 21  IKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Length = 291

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y +L ++    D + IK+ ++K+A  LHPD N    A   FK I  A  VL+DP KR+  
Sbjct: 6   YGLLGVSRNASD-AEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIV 64

Query: 129 D 129
           D
Sbjct: 65  D 65

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDP 122
            K   Y+IL +T        IKK ++K+A+  HPD+N     A+  FK    A  VL+DP
Sbjct: 2   VKRDYYEILGVTR-DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 123 GKRKAFD 129
            KR  +D
Sbjct: 61  KKRGIYD 67

Length = 366

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 84  IKKQFKKMALMLHPDKNSSVA-ADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK ++K+A+  HPDKN   A A+  FK +  A  VL+D  KR+++D
Sbjct: 18  IKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYD 64

Length = 391

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 84  IKKQFKKMALMLHPDKNSSVA-ADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK F+K+A+  HPDKN     A+  FK I  A  VL+DP K+  +D
Sbjct: 21  IKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYD 67

Length = 380

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y++L ++        IK  ++K+AL  HPD+N    A   F  I  A  VL+D  KR  +
Sbjct: 5   YELLGVSR-TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHY 63

Query: 129 D 129
           D
Sbjct: 64  D 64

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 84  IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK ++++A   HPD N +  A+  FK I  A  VL+DP KRK +D
Sbjct: 20  IKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Length = 382

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDP 122
            K   Y++L ++     +  IKK ++K A+  HPDKN     A+  FK    A +VL+DP
Sbjct: 3   EKRDYYEVLGVSK-TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 123 GKRKAFD 129
            KR  +D
Sbjct: 62  DKRSRYD 68

Length = 386

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
           +K   Y++L + D    +  +KK ++K+A   HPD N +  A+  FK ++ A + L+DP 
Sbjct: 2   SKRDYYEVLGV-DRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQ 60

Query: 124 KRKAFD 129
           K+  +D
Sbjct: 61  KKAHYD 66

Length = 371

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124
           K   Y++L + D   D   IKK ++K+A   HPD +    A+  FK I  A  VL+D  K
Sbjct: 4   KRDYYEVLGV-DRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEK 62

Query: 125 RKAFD 129
           R+ +D
Sbjct: 63  RQRYD 67

Length = 378

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 84  IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK ++K++   HPD N    A+  +K ++ A   L+DP KR A+D
Sbjct: 21  IKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDPG 123
           K   Y+IL + D       IKK ++++A   HPD N     A+  FK I  A  +L+DP 
Sbjct: 4   KKDYYEILGV-DRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ 62

Query: 124 KRKAFD 129
           KR  +D
Sbjct: 63  KRAQYD 68

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 26/46 (56%)

Query: 84  IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK ++K++   HPD N    AD  FK I  A  VL+D  KR  +D
Sbjct: 21  IKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVLTDPGKRK 126
           YKIL + D       IKK F+++A   HPD +  +   A+  FK I  A  VL+DP KR+
Sbjct: 6   YKILGV-DRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64

Query: 127 AFD 129
            +D
Sbjct: 65  QYD 67

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKA 127
           Y IL ++    D   IK  ++K+A+  HPDKN  +  ++  FK    A  +L DP KR+A
Sbjct: 7   YDILGVSKSAND-EEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65

Query: 128 FD 129
           +D
Sbjct: 66  YD 67

Length = 372

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 84  IKKQFKKMALMLHPDKNSSVA-ADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK ++K+AL  HPD+N     A+  FK    A  VL D  KR  +D
Sbjct: 21  IKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYD 67

Length = 373

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDP 122
            K   Y++L ++    D   IKK ++K+AL  HPDKN  +  A+  FK +  A  VL++ 
Sbjct: 1   MKRDYYEVLGVSR-SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND 59

Query: 123 GKRKAFD 129
            KR+ +D
Sbjct: 60  DKRRRYD 66

Length = 397

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 66  STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR 125
             LY++L ++      S IKK ++K+A+  HPDK         FK I  A  VL+DP KR
Sbjct: 28  EKLYEVLNLSK-DCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKR 83

Query: 126 KAFD 129
           K +D
Sbjct: 84  KIYD 87

Length = 421

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 67  TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKR 125
           + Y+IL + +   +   IKK ++K+AL  HPD+N+    A+  FKLI  A  VL+D  KR
Sbjct: 4   SYYEILEV-EKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62

Query: 126 KAFD 129
             +D
Sbjct: 63  ALYD 66

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 69  YKILAI--TDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRK 126
           Y+IL +  T  Q D+   KK + K+A   HPD   +  A+  FK I +A +VL D  KR 
Sbjct: 6   YQILGVSKTASQADL---KKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62

Query: 127 AFD 129
           A+D
Sbjct: 63  AYD 65

Length = 372

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS--SVAADGAFKLIRSANNVLTDP 122
               Y+IL +  P   +  IKK ++K+AL  HPD+N      A+  FK I  A  +L+DP
Sbjct: 5   LLDYYEILGVP-PNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP 63

Query: 123 GKRKAFDNRIRLNKVKLMS 141
            +R  +D     N     S
Sbjct: 64  ERRAEYDKIGADNYFPGKS 82

Length = 237

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y I+ +  P  D+  IK  ++++A   HPD +    A+  FK +  A  VL+D  +R  +
Sbjct: 7   YAIMGV-KPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 65

Query: 129 DN 130
           D 
Sbjct: 66  DQ 67

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y+IL +     D   +K+ ++++A   HPD N    A+  FK I  A  VL+DP  R  +
Sbjct: 6   YEILGV-SRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARY 64

Query: 129 D 129
           D
Sbjct: 65  D 65

Length = 374

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124
           K   Y++L ++    +   I++ ++K+A   HPD N S  A      I  A +VL D  K
Sbjct: 3   KKDYYEVLGVSKTASE-QEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 125 RKAFD 129
           RK +D
Sbjct: 62  RKQYD 66

Length = 372

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVLTDP 122
           K   Y+IL ++        IK+ +K++    HPD++  +   A+  FK I+ A  VL+DP
Sbjct: 3   KKDYYEILGVSRNATQ-EEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 123 GKRKAFD 129
            KR  +D
Sbjct: 62  QKRAMYD 68

Length = 369

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 84  IKKQFKKMALMLHPDKNS---SVAADGAFKLIRSANNVLTDPGKRKAFDN 130
           I K  KK     HPDK +   +   D  FKLI+ A  VL D   R  +D+
Sbjct: 63  ILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.92
PRK14288	369	chaperone protein DnaJ; Provisional	99.89
PRK14296	372	chaperone protein DnaJ; Provisional	99.89
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.88
PRK14279	392	chaperone protein DnaJ; Provisional	99.87
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.87
PRK14298	377	chaperone protein DnaJ; Provisional	99.86
PRK14286	372	chaperone protein DnaJ; Provisional	99.86
PRK14287	371	chaperone protein DnaJ; Provisional	99.86
PRK14276	380	chaperone protein DnaJ; Provisional	99.86
PRK14278	378	chaperone protein DnaJ; Provisional	99.86
PRK14283	378	chaperone protein DnaJ; Provisional	99.85
PRK14280	376	chaperone protein DnaJ; Provisional	99.85
PRK14284	391	chaperone protein DnaJ; Provisional	99.85
PRK14295	389	chaperone protein DnaJ; Provisional	99.84
PRK14282	369	chaperone protein DnaJ; Provisional	99.84
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14294	366	chaperone protein DnaJ; Provisional	99.84
PRK14301	373	chaperone protein DnaJ; Provisional	99.84
PRK14277	386	chaperone protein DnaJ; Provisional	99.84
PRK14285	365	chaperone protein DnaJ; Provisional	99.84
PRK10767	371	chaperone protein DnaJ; Provisional	99.84
PRK14297	380	chaperone protein DnaJ; Provisional	99.84
PRK14300	372	chaperone protein DnaJ; Provisional	99.83
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.83
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14289	386	chaperone protein DnaJ; Provisional	99.82
PRK14290	365	chaperone protein DnaJ; Provisional	99.82
PRK14281	397	chaperone protein DnaJ; Provisional	99.81
PRK14293	374	chaperone protein DnaJ; Provisional	99.81
PRK14292	371	chaperone protein DnaJ; Provisional	99.8
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.79
PRK14299	291	chaperone protein DnaJ; Provisional	99.78
PRK14291	382	chaperone protein DnaJ; Provisional	99.78
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.76
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.73
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.7
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.7
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.69
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.68
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PHA03102	153	Small T antigen; Reviewed	99.65
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.61
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.6
PRK05014	171	hscB co-chaperone HscB; Provisional	99.54
PRK01356	166	hscB co-chaperone HscB; Provisional	99.52
PRK00294	173	hscB co-chaperone HscB; Provisional	99.48
PRK03578	176	hscB co-chaperone HscB; Provisional	99.48
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.37
PTZ00100	116	DnaJ chaperone protein; Provisional	99.35
PHA02624	647	large T antigen; Provisional	99.29
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.25
PRK01773	173	hscB co-chaperone HscB; Provisional	99.21
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.18
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.18
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.07
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.47
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.42
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.29
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.69
KOG0431	453	consensus Auxilin-like protein and related protein	97.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.18
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.16
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.15
PF13428	44	TPR_14: Tetratricopeptide repeat	96.72
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.34
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.21
PF13371	73	TPR_9: Tetratricopeptide repeat	96.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.98
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.94
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.92
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	95.72
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.31
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.0
KOG0553	304	consensus TPR repeat-containing protein [General f	94.84
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	94.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.66
PRK15359	144	type III secretion system chaperone protein SscB;	94.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.57
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.45
KOG4234	271	consensus TPR repeat-containing protein [General f	94.26
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	93.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.91
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.46
TIGR02552	135	LcrH_SycD type III secretion low calcium response	93.15
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.81
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.7
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	92.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	92.24
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.21
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	91.79
PF13512	142	TPR_18: Tetratricopeptide repeat	91.65
KOG0553	304	consensus TPR repeat-containing protein [General f	91.42
PRK15359	144	type III secretion system chaperone protein SscB;	91.17
TIGR02552	135	LcrH_SycD type III secretion low calcium response	90.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.2
PF13431	34	TPR_17: Tetratricopeptide repeat	90.02
PRK11189	296	lipoprotein NlpI; Provisional	89.9
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	89.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	89.54
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.2
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	88.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	88.37
KOG0724	335	consensus Zuotin and related molecular chaperones	88.18
PRK12370	553	invasion protein regulator; Provisional	88.12
PF13371	73	TPR_9: Tetratricopeptide repeat	88.09
PF14901	94	Jiv90: Cleavage inducing molecular chaperone	87.6
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	87.0
KOG4234	271	consensus TPR repeat-containing protein [General f	86.29
PRK11788	389	tetratricopeptide repeat protein; Provisional	86.29
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	86.25
KOG0547	606	consensus Translocase of outer mitochondrial membr	86.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	86.08
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	85.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	85.51
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	85.39
PRK11189	296	lipoprotein NlpI; Provisional	84.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	84.41
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	84.3
PF13446	62	RPT: A repeated domain in UCH-protein	83.59
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.44
PRK14285	365	chaperone protein DnaJ; Provisional	83.41
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	83.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	83.18
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	82.95
PRK10803	263	tol-pal system protein YbgF; Provisional	82.71
PF10475	291	DUF2450: Protein of unknown function N-terminal do	82.67
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	82.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	81.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	81.54
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	81.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	81.32
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	80.38
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	80.3
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	80.26

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-29  Score=220.31  Aligned_cols=69  Identities=38%  Similarity=0.569  Sum_probs=66.9

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      +.|||+|||| +++||.+|||+|||+||++||||+++ +++|+++|++|++||+|||||++|+.||+++..
T Consensus         3 ~~dyYeiLGV-~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~   72 (371)
T COG0484           3 KRDYYEILGV-SKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHA   72 (371)
T ss_pred             ccchhhhcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcc
Confidence            4799999999 99999999999999999999999999 889999999999999999999999999999876

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.92  E-value=2.2e-24  Score=185.04  Aligned_cols=130  Identities=27%  Similarity=0.326  Sum_probs=122.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKK   86 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~   86 (193)
                      +.+++++..+.++|++++..++|+.|+.+|++|..++++...+++-++.++++.....++|||+|||| .++|+..+|-+
T Consensus       335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV-kRnAsKqEI~K  413 (504)
T KOG0624|consen  335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGV-KRNASKQEITK  413 (504)
T ss_pred             hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhh-cccccHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHHcCCCchhhhhhhhhhhccc
Q 048108           87 QFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKV  137 (193)
Q Consensus        87 aYr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~  137 (193)
                      |||+++.+||||...++    .++.+|.-|..|-+||+||++|+.||.+-++.+.
T Consensus       414 AYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~  468 (504)
T KOG0624|consen  414 AYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDP  468 (504)
T ss_pred             HHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCCh
Confidence            99999999999998864    4788999999999999999999999999887433

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=2.8e-23  Score=182.70  Aligned_cols=68  Identities=37%  Similarity=0.604  Sum_probs=64.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+||++||||+++ ++.++++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~dyY~vLgv-~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          3 LSYYEILEV-EKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            699999999 99999999999999999999999997 567899999999999999999999999998753

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=3.2e-23  Score=182.54  Aligned_cols=69  Identities=30%  Similarity=0.446  Sum_probs=65.4

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++|+.++||+|||+||++||||+++.+.++++|++|++||+|||||.+|+.||+++..
T Consensus         3 ~~dyY~~Lgv-~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGV-SKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            3699999999 99999999999999999999999998888999999999999999999999999997753

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.9e-23  Score=175.15  Aligned_cols=70  Identities=37%  Similarity=0.566  Sum_probs=66.9

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..+|||+|||| +++|+..+||+||||||+++|||||+ +|.|.+.|+.|+.||+|||||++|+.||..|..
T Consensus        14 ~~rDfYelLgV-~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe   84 (336)
T KOG0713|consen   14 AGRDFYELLGV-PKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE   84 (336)
T ss_pred             cCCCHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence            45899999999 99999999999999999999999999 589999999999999999999999999999965

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.7e-22  Score=177.79  Aligned_cols=67  Identities=40%  Similarity=0.669  Sum_probs=63.6

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++ ++.++++|+.|++||+|||||++|+.||+++.
T Consensus         9 ~Dyy~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          9 KDFYKELGV-SSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             cCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            799999999 99999999999999999999999987 46789999999999999999999999999864

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.4e-22  Score=172.87  Aligned_cols=66  Identities=42%  Similarity=0.662  Sum_probs=63.2

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..||+|||| +++||.+|||+|||+|+++||||||+.  +.++|++|+.||+|||||++|..||+++..
T Consensus         4 ~~~y~il~v-~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~   69 (337)
T KOG0712|consen    4 TKLYDILGV-SPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEE   69 (337)
T ss_pred             cccceeecc-CCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            689999999 999999999999999999999999975  889999999999999999999999999865

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.87  E-value=4.5e-22  Score=177.49  Aligned_cols=65  Identities=38%  Similarity=0.613  Sum_probs=61.0

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ..|||+|||| +++||.++||+|||+||++||||++++   .++|++|++||+||+||.+|+.||.++.
T Consensus        27 ~~d~Y~vLGV-~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         27 NEKLYEVLNL-SKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             chhHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            3799999999 999999999999999999999999853   5899999999999999999999998765

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=4.6e-22  Score=175.46  Aligned_cols=68  Identities=35%  Similarity=0.547  Sum_probs=64.8

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+++..
T Consensus         5 ~d~y~iLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298          5 RDYYEILGL-SKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             CCHHHhhCC-CCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            699999999 99999999999999999999999998888899999999999999999999999998753

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=7.3e-22  Score=173.93  Aligned_cols=67  Identities=33%  Similarity=0.567  Sum_probs=63.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++ ++.++++|++|++||+||+||.+|+.||+++.
T Consensus         4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          4 RSYYDILGV-SKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            699999999 99999999999999999999999987 46789999999999999999999999999875

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=5.5e-22  Score=174.69  Aligned_cols=69  Identities=30%  Similarity=0.561  Sum_probs=65.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGV-DRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            3699999999 99999999999999999999999998778899999999999999999999999998753

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=6.1e-22  Score=174.89  Aligned_cols=68  Identities=29%  Similarity=0.485  Sum_probs=65.0

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+|+++||||+++++.++++|+.|++||++|+||.+|+.||+++..
T Consensus         4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          4 TEYYDRLGV-SKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCHHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            699999999 99999999999999999999999998888999999999999999999999999997753

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=9.5e-22  Score=173.54  Aligned_cols=67  Identities=34%  Similarity=0.492  Sum_probs=64.4

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++++.++++|+.|++||+||+||.+|+.||+++.
T Consensus         3 ~d~y~iLgv-~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~   69 (378)
T PRK14278          3 RDYYGLLGV-SRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD   69 (378)
T ss_pred             CCcceecCC-CCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence            699999999 9999999999999999999999999888889999999999999999999999999775

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.5e-21  Score=172.33  Aligned_cols=68  Identities=35%  Similarity=0.529  Sum_probs=65.0

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ..|||+|||| +++|+.+|||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||+++.
T Consensus         4 ~~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          4 KRDYYEVLGV-DRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             cCChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            4799999999 9999999999999999999999999888899999999999999999999999999764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.8e-21  Score=171.71  Aligned_cols=68  Identities=32%  Similarity=0.480  Sum_probs=65.0

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|++|++||+||+||.+|+.||+++..
T Consensus         4 ~~~y~iLgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          4 RDYYEVLGV-SKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            699999999 99999999999999999999999998888999999999999999999999999998753

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.6e-21  Score=171.45  Aligned_cols=68  Identities=34%  Similarity=0.534  Sum_probs=63.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+|+++||||+++. +.++++|+.|++||++|+||.+|+.||+++..
T Consensus         1 ~d~y~iLgv-~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGV-SKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            489999999 999999999999999999999999984 67889999999999999999999999998753

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.5e-21  Score=169.78  Aligned_cols=64  Identities=38%  Similarity=0.596  Sum_probs=61.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDN  130 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~  130 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++ .+.++++|+.|++||+||+||.+|+.||+
T Consensus         9 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          9 KDYYKVLGV-PKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            699999999 99999999999999999999999987 45689999999999999999999999998

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.7e-21  Score=168.68  Aligned_cols=69  Identities=32%  Similarity=0.526  Sum_probs=63.9

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++||.++||+|||+|+++||||+++.  +.++++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~~d~y~~lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          3 KKDYYEILGV-SRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCChHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            3799999999 999999999999999999999999874  56889999999999999999999999997753

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.1e-21  Score=172.39  Aligned_cols=106  Identities=26%  Similarity=0.416  Sum_probs=98.0

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh----------
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL----------  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~----------  134 (193)
                      ..|+|.|||| +++++.++||+.||++|.+.||||+..+.|+++|+.|+.||++|+|+.+|..||..+..          
T Consensus       234 ~~daYsvlGl-~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~~~~~~  312 (490)
T KOG0720|consen  234 ILDAYSALGL-PSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELHRQVIS  312 (490)
T ss_pred             CCCchhhcCC-CCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            5899999999 99999999999999999999999999999999999999999999999999999988765          


Q ss_pred             ----------cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcc
Q 048108          135 ----------NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRK  186 (193)
Q Consensus       135 ----------~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~  186 (193)
                                +-.....|..|+..|.               ++|++.++++|+||++|+.+.
T Consensus       313 ~~~~~~~~~eEA~ntI~CskC~n~H~---------------r~~T~rs~s~AR~C~~C~~~H  359 (490)
T KOG0720|consen  313 SLNDLQKAVEEARNTIFCSKCGNTHF---------------RVLTSRSPSQARWCAECGVKH  359 (490)
T ss_pred             HHHHHHHHHHHHHhheehhhhcCcce---------------eeeecCChhhhHHHHHhCccC
Confidence                      2233467999999998               999999999999999999864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.8e-21  Score=167.94  Aligned_cols=69  Identities=35%  Similarity=0.538  Sum_probs=64.5

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++|+.++||+|||+|+++||||+++ .+.+++.|+.|++||+||+||.+|+.||+++..
T Consensus         3 ~~d~y~~lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          3 KRDYYEILGV-TRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCChHHHhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            4799999999 99999999999999999999999997 467889999999999999999999999998753

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.1e-21  Score=168.67  Aligned_cols=68  Identities=32%  Similarity=0.499  Sum_probs=63.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+|+++||||+++. +.++++|+.|++||+||+||.+|+.||.++..
T Consensus         4 ~~~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          4 RDYYEVLGV-SRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CChHHhcCC-CCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            699999999 999999999999999999999999874 66889999999999999999999999997753

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.8e-21  Score=168.98  Aligned_cols=67  Identities=34%  Similarity=0.551  Sum_probs=63.5

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++ .+.++++|+.|++||+||+||.+|+.||.++.
T Consensus         5 ~d~y~~Lgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   72 (386)
T PRK14277          5 KDYYEILGV-DRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH   72 (386)
T ss_pred             CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence            699999999 99999999999999999999999997 46788999999999999999999999999775

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=7.6e-21  Score=167.11  Aligned_cols=68  Identities=34%  Similarity=0.496  Sum_probs=63.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+|+++||||+++. +.++++|++|++||+||+||.+|..||.++..
T Consensus         3 ~d~y~iLgv-~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGL-SKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            699999999 999999999999999999999999874 66889999999999999999999999997753

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=9.8e-21  Score=166.75  Aligned_cols=69  Identities=36%  Similarity=0.605  Sum_probs=64.1

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++|+.++||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|..||.++..
T Consensus         3 ~~d~y~iLgv-~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGV-SRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            3699999999 99999999999999999999999987 466889999999999999999999999987753

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=7e-21  Score=168.14  Aligned_cols=68  Identities=35%  Similarity=0.560  Sum_probs=63.9

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++. +.++++|+.|++||+||+||.+|+.||+++..
T Consensus         4 ~d~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          4 KDYYEVLGL-EKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CChHHhhCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            699999999 999999999999999999999999974 67889999999999999999999999998753

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=8e-21  Score=167.37  Aligned_cols=68  Identities=32%  Similarity=0.456  Sum_probs=64.5

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+++..
T Consensus         3 ~~~y~iLgv-~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGV-SKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            699999999 99999999999999999999999998778899999999999999999999999997753

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.83  E-value=1.8e-20  Score=164.04  Aligned_cols=67  Identities=36%  Similarity=0.557  Sum_probs=63.6

Q ss_pred             chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      |||+|||| +++|+.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|..||.++..
T Consensus         1 d~y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349         1 DYYEILGV-SKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             ChHHhCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            79999999 99999999999999999999999998777899999999999999999999999997753

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=4e-21  Score=168.98  Aligned_cols=100  Identities=29%  Similarity=0.446  Sum_probs=88.6

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh-------
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL-------  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~-------  134 (193)
                      ..+.||+|||| ..+|+..+||++||+|||+||||+++.  .++.+.|++|+.||+|||||..|+.||.....       
T Consensus         6 ~~~c~YE~L~v-~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s   84 (508)
T KOG0717|consen    6 KKRCYYEVLGV-ERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNS   84 (508)
T ss_pred             hhhHHHHHhcc-cccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCC
Confidence            45799999999 999999999999999999999999885  56889999999999999999999999987763       


Q ss_pred             ------cccccccCCCCCCCCCCCCCCcccccccCcc
Q 048108          135 ------NKVKLMSCSCCRPQGAGDNNSPRASTYKANN  165 (193)
Q Consensus       135 ------~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~  165 (193)
                            .+.|..+.+.|+.+++ ..+.+||++|...+
T Consensus        85 ~~~~~~~dlf~ff~~~~y~gy~-~~~~gfy~vy~dvf  120 (508)
T KOG0717|consen   85 DTGVQIEDLFQFFTSSCYIGYE-NTSAGFYRVYQDVF  120 (508)
T ss_pred             ccccchHHHHHHhhhhhhcccc-cccchhHHHHHHHH
Confidence                  5677788889999995 77888998886554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=6.2e-20  Score=160.23  Aligned_cols=123  Identities=28%  Similarity=0.396  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHH
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFK   89 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr   89 (193)
                      ..=-..++.+|.+++..++|++|++++++|.++..+. .+++++..++..+..+++.|||.|||| .+.++..+||++||
T Consensus       318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~-e~r~~l~~A~~aLkkSkRkd~ykilGi-~~~as~~eikkayr  395 (486)
T KOG0550|consen  318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC-EIRRTLREAQLALKKSKRKDWYKILGI-SRNASDDEIKKAYR  395 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhhhHHHHhhh-hhhcccchhhhHHH
Confidence            3445678999999999999999999999999999994 599999999999999999999999999 99999999999999


Q ss_pred             HHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           90 KMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        90 ~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ++++.+|||++..  .+++.+|+.|.+||.+|+||.+|..||...+.
T Consensus       396 k~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl  442 (486)
T KOG0550|consen  396 KLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL  442 (486)
T ss_pred             HHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence            9999999999873  56788999999999999999999999987765

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3.5e-20  Score=164.01  Aligned_cols=69  Identities=35%  Similarity=0.566  Sum_probs=64.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++|+.+|||+|||+|+++||||+++ .+.++++|+.|++||++|+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv-~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGV-SKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            3799999999 99999999999999999999999997 457899999999999999999999999997653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=4.8e-20  Score=162.06  Aligned_cols=67  Identities=37%  Similarity=0.571  Sum_probs=63.0

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++..  .++++|+.|++||++|+||.+|+.||.++.
T Consensus         3 ~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~   71 (365)
T PRK14290          3 KDYYKILGV-DRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT   71 (365)
T ss_pred             CChhhhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence            699999999 9999999999999999999999998743  688999999999999999999999999775

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.3e-20  Score=163.98  Aligned_cols=67  Identities=34%  Similarity=0.570  Sum_probs=63.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++. +.++++|+.|++||++|+||.+|+.||.++.
T Consensus         3 ~d~y~iLgv-~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          3 RDYYEVLGV-SRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CChhhhcCC-CCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            699999999 999999999999999999999999974 5688999999999999999999999999775

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.3e-20  Score=162.29  Aligned_cols=67  Identities=31%  Similarity=0.542  Sum_probs=64.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|++++|||+++.+.++++|+.|++||++|+||.+|+.||.++.
T Consensus         3 ~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          3 ADYYEILGV-SRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CChhhhcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            699999999 9999999999999999999999999888899999999999999999999999998764

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.2e-19  Score=159.80  Aligned_cols=67  Identities=31%  Similarity=0.493  Sum_probs=64.2

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++|+.++||+|||+|++++|||+++.+.++++|+.|++||++|+||.+|+.||.++.
T Consensus         2 ~d~y~~Lgv-~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~   68 (371)
T PRK14292          2 MDYYELLGV-SRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT   68 (371)
T ss_pred             CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence            589999999 9999999999999999999999999888899999999999999999999999999764

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.6e-19  Score=153.99  Aligned_cols=68  Identities=34%  Similarity=0.485  Sum_probs=65.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+..|||+||++|+++||||.+...++.++|++|.+||+||+|+++|..||..+..
T Consensus        43 ~d~Y~vLgv-~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~  110 (288)
T KOG0715|consen   43 EDYYKVLGV-SRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE  110 (288)
T ss_pred             cchhhhhCc-CCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence            499999999 99999999999999999999999999999999999999999999999999999988764

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.79  E-value=2e-19  Score=120.25  Aligned_cols=62  Identities=35%  Similarity=0.656  Sum_probs=59.3

Q ss_pred             chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch--HHHHHHHHHHHHHHcCCCchhhhhh
Q 048108           67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA--ADGAFKLIRSANNVLTDPGKRKAFD  129 (193)
Q Consensus        67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~~R~~YD  129 (193)
                      |||+|||| +++++.++||++|+++++.+|||+++...  +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl-~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGL-PPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTS-TTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCC-CCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            69999999 99999999999999999999999988755  8899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.2e-19  Score=153.57  Aligned_cols=68  Identities=40%  Similarity=0.552  Sum_probs=65.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++||.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||.++..
T Consensus         4 ~d~y~vLgv-~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          4 KDYYAILGV-PKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            699999999 99999999999999999999999998888999999999999999999999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.4e-19  Score=158.55  Aligned_cols=68  Identities=35%  Similarity=0.529  Sum_probs=65.1

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|+.|++||+||+||.+|+.||.++..
T Consensus         3 ~d~Y~~Lgv-~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          3 KDYYEILGV-SRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCHHHhhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            699999999 99999999999999999999999998888999999999999999999999999998754

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=7.3e-19  Score=146.09  Aligned_cols=69  Identities=38%  Similarity=0.606  Sum_probs=65.7

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|+|+|||| +++|+.++||++||+|++++|||++++ |++.++|+.||+||+||+||.+|..||.++..
T Consensus        30 ~~~LYdVLgl-~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~   99 (279)
T KOG0716|consen   30 RLDLYDVLGL-PKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL   99 (279)
T ss_pred             hhHHHHHhCC-CcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence            4789999999 999999999999999999999999986 88999999999999999999999999999754

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3e-18  Score=145.95  Aligned_cols=69  Identities=33%  Similarity=0.505  Sum_probs=66.0

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||.|||| +.+++..+|+++||+.++++|||||+ +|.|.+.|+.|.+||+||+|+.+|..||..+..
T Consensus         4 ~~dyY~lLgi-~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~   73 (296)
T KOG0691|consen    4 DTDYYDLLGI-SEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS   73 (296)
T ss_pred             cchHHHHhCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            3799999999 99999999999999999999999998 588999999999999999999999999999875

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.73  E-value=5e-18  Score=146.11  Aligned_cols=67  Identities=28%  Similarity=0.536  Sum_probs=64.2

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++++.++||+|||+|+++||||+++.+.++++|+.|++||++|+||.+|+.||..+.
T Consensus         4 ~d~y~~Lgv-~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGV-KPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            699999999 9999999999999999999999999878899999999999999999999999999764

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.70  E-value=3.2e-17  Score=107.86  Aligned_cols=58  Identities=41%  Similarity=0.676  Sum_probs=54.2

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CchHHHHHHHHHHHHHHcCCCch
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS--SVAADGAFKLIRSANNVLTDPGK  124 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsd~~~  124 (193)
                      .|||+|||| +++++.++||++|+++++.+|||+++  .+.+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl-~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGV-PRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            489999999 99999999999999999999999998  56788999999999999999853

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.70  E-value=1.9e-17  Score=156.90  Aligned_cols=68  Identities=26%  Similarity=0.329  Sum_probs=65.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .+||+|||| +++||..+||+|||+||+++|||+++.+.+..+|+.|++||+|||||.+|+.||.+|..
T Consensus       573 ~dYYdILGV-s~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~  640 (1136)
T PTZ00341        573 TLFYDILGV-GVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD  640 (1136)
T ss_pred             CChHHHcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence            899999999 99999999999999999999999998777889999999999999999999999998865

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.8e-17  Score=145.12  Aligned_cols=68  Identities=34%  Similarity=0.569  Sum_probs=63.9

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||.+|+| +++||.+||++|||++++.+||||..+|    .|++.|+.|..||||||||.+|..||.++..
T Consensus         9 ~e~Ya~LNl-pkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q   80 (546)
T KOG0718|consen    9 IELYALLNL-PKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ   80 (546)
T ss_pred             hhHHHHhCC-CcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence            589999999 9999999999999999999999998754    5789999999999999999999999998875

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.68  E-value=8.4e-17  Score=103.97  Aligned_cols=54  Identities=43%  Similarity=0.664  Sum_probs=51.5

Q ss_pred             chhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCC
Q 048108           67 TLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTD  121 (193)
Q Consensus        67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd  121 (193)
                      |||+|||| +++++.++||++|+++++++|||+.+. ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl-~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGV-PPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            79999999 999999999999999999999999986 6789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=4.7e-17  Score=132.75  Aligned_cols=70  Identities=34%  Similarity=0.600  Sum_probs=64.6

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS---VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .+.|+|+|||| .++|+..+|++||++|++++|||+++.   ..+.+.|++|+.||+||||.++|+.||..+.-
T Consensus        12 ~~~d~YevLGV-er~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   12 NKKDLYEVLGV-ERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             cccCHHHHhhh-cccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            34699999999 999999999999999999999999963   46788999999999999999999999998865

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=3e-16  Score=126.82  Aligned_cols=70  Identities=29%  Similarity=0.472  Sum_probs=65.6

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      +.-|+|+|||| +++++..|||++||+|++++||||.+. .+.++.|..|++||+.|+|+..|..|..++++
T Consensus        97 ~~fDPyEILGl-~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P  167 (230)
T KOG0721|consen   97 QKFDPYEILGL-DPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP  167 (230)
T ss_pred             hcCCcHHhhCC-CCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence            45899999999 999999999999999999999999987 56677799999999999999999999999987

>PHA03102 Small T antigen; Reviewed

Probab=99.65  E-value=2.8e-17  Score=127.87  Aligned_cols=113  Identities=13%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             cchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhhcccccccCC
Q 048108           66 STLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCS  143 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~~~c~  143 (193)
                      ..+|+|||| +++|  |.++||+|||++++++|||+++   .+++|+.|++||++|+|+.+|..||.++.....-+..- 
T Consensus         5 ~~l~~vLGl-~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~-   79 (153)
T PHA03102          5 KELMDLLGL-PRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDV-   79 (153)
T ss_pred             HHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccccccccc-
Confidence            578999999 9999  9999999999999999999974   45899999999999999999999999886532211100 


Q ss_pred             CCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCc
Q 048108          144 CCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRR  185 (193)
Q Consensus       144 ~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~  185 (193)
                       =...+...+|+.++..|.+....|. ......-+|..|--+
T Consensus        80 -~~~~f~~~fg~~~~~~~~~~~~~c~-~~~~~~c~Ci~c~l~  119 (153)
T PHA03102         80 -PSGYVGATFGDRVNALYCKDWDTCL-KNLSSLCKCIFCLLR  119 (153)
T ss_pred             -HHHHhhhhcCCcchhhHhcchHHHH-HHHHHhCCCchhhhh
Confidence             0011123456667788888888883 222244556556443

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.61  E-value=8.9e-16  Score=142.81  Aligned_cols=68  Identities=38%  Similarity=0.580  Sum_probs=64.6

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+.++||++||+|++++|||+++.+.+.++|+.|++||++|+||.+|+.||.++..
T Consensus         2 ~DYYeVLGV-s~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a   69 (871)
T TIGR03835         2 RDYYEVLGI-DRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD   69 (871)
T ss_pred             CChhHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence            699999999 99999999999999999999999998888889999999999999999999999998754

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.6e-15  Score=121.41  Aligned_cols=66  Identities=36%  Similarity=0.660  Sum_probs=62.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch--HHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA--ADGAFKLIRSANNVLTDPGKRKAFDNR  131 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~~R~~YD~~  131 (193)
                      ..+||+|||| +++|+..+|+++||++++++|||+++...  +.+.|+.|++||++|+|+.+|..||..
T Consensus         5 ~~~~y~iLgv-~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           5 LLDYYEILGV-PPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            3799999999 99999999999999999999999998543  899999999999999999999999986

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.54  E-value=1.8e-14  Score=114.51  Aligned_cols=68  Identities=18%  Similarity=0.344  Sum_probs=58.9

Q ss_pred             cchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| ++.  ++..+|+++||++++++|||+..+..      +.+.|..|++||++|+||.+|..|+-.+..
T Consensus         1 ~~yf~llgl-~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g   76 (171)
T PRK05014          1 MDYFTLFGL-PARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG   76 (171)
T ss_pred             CCHHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence            489999999 665  68899999999999999999976422      456799999999999999999999977653

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.52  E-value=2.2e-14  Score=113.46  Aligned_cols=68  Identities=21%  Similarity=0.363  Sum_probs=58.4

Q ss_pred             cchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| ++.  ++..+|+++||++++++|||+..+..    +.+.+..|++||++|+||.+|..|+..+..
T Consensus         2 ~~yf~llgl-~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356          2 QNYFQLLGL-PQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             CCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            589999999 665  78999999999999999999987432    224578999999999999999999887753

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=8.9e-14  Score=110.62  Aligned_cols=69  Identities=16%  Similarity=0.350  Sum_probs=60.1

Q ss_pred             ccchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||++||| ++.  .+..+|+++||++++++|||+.....      +.+.|..||+||++|+||.+|..|+-.+..
T Consensus         3 ~~~~F~l~~l-~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          3 TPCHFALFDL-QPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCChhhhcCc-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            4799999999 555  67899999999999999999986422      456799999999999999999999987764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.48  E-value=1e-13  Score=110.61  Aligned_cols=69  Identities=19%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             ccchhhhhcCCCC--CCCHHHHHHHHHHHHHhcCCCCCCC-chH-----HHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDP--QVDISVIKKQFKKMALMLHPDKNSS-VAA-----DGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~--~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a-----~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      +.|||+|||| ++  +++..+|+++||++++++|||+.+. +..     .+.+..||+||++|+||.+|..|+..+..
T Consensus         5 ~~dyf~llgl-p~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G   81 (176)
T PRK03578          5 KDDHFSLFGL-PARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG   81 (176)
T ss_pred             CCCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence            4799999999 65  4689999999999999999999864 222     33468999999999999999999987653

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=8.8e-14  Score=115.10  Aligned_cols=70  Identities=24%  Similarity=0.425  Sum_probs=66.5

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhhc
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLN  135 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~  135 (193)
                      ..|.|+|||| .++++..+|.+|||+|++++|||+++.+++.+.|..|..||++|.|.+.|..||-.++.+
T Consensus        32 ~enCYdVLgV-~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   32 AENCYDVLGV-AREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             chhHHHHhhh-hhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            3899999999 999999999999999999999999999988999999999999999999999999888763

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.4e-13  Score=112.77  Aligned_cols=68  Identities=44%  Similarity=0.613  Sum_probs=63.1

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ..|+|+|||| .+.|+.++|++||+++++++|||+++.+  .++.+|++|.+||++|+||.+|..||..+.
T Consensus         2 ~~d~~~~l~i-~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGI-ARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCc-cccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            3699999999 8999999999999999999999998876  566689999999999999999999999986

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.37  E-value=1.7e-12  Score=109.83  Aligned_cols=55  Identities=25%  Similarity=0.376  Sum_probs=50.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--------chHHHHHHHHHHHHHHcCC
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--------VAADGAFKLIRSANNVLTD  121 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~vLsd  121 (193)
                      .|+|+|||| ++++|.++||++||+|++++|||+...        +.++++|+.|++||++|+.
T Consensus       200 ~~ay~vLgv-~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGV-SESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            799999999 999999999999999999999999642        3478899999999999975

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.35  E-value=1.3e-12  Score=97.03  Aligned_cols=52  Identities=31%  Similarity=0.454  Sum_probs=47.7

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT  120 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs  120 (193)
                      ..++|+|||| ++++|.++||++||+|++++|||+++   ..+.|+.|++||++|.
T Consensus        64 ~~eAy~ILGv-~~~As~~eIkkaYRrLa~~~HPDkgG---s~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNI-SPTASKERIREAHKQLMLRNHPDNGG---STYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCC-CCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHh
Confidence            3799999999 99999999999999999999999963   4578999999999985

>PHA02624 large T antigen; Provisional

Probab=99.29  E-value=2.1e-12  Score=118.88  Aligned_cols=64  Identities=19%  Similarity=0.302  Sum_probs=58.4

Q ss_pred             hcccccchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhh
Q 048108           61 LSETKSTLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF  128 (193)
Q Consensus        61 ~~~~~~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~Y  128 (193)
                      +.+...++|+|||| +++|  +.++||+|||++++++|||+++   ++++|+.|++||++|+|+.+|..|
T Consensus         6 tree~~elyelLGL-~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          6 SREESKELMDLLGL-PMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             chHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            34445799999999 9999  9999999999999999999974   468999999999999999999998

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=4.7e-12  Score=105.82  Aligned_cols=107  Identities=23%  Similarity=0.235  Sum_probs=87.5

Q ss_pred             ccchhhhhcCC--CCCCCHHHHHHHHHHHHHhcCCCCCC---CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhhccccc
Q 048108           65 KSTLYKILAIT--DPQVDISVIKKQFKKMALMLHPDKNS---SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNKVKL  139 (193)
Q Consensus        65 ~~d~Y~vLgv~--~~~a~~~~Ik~aYr~l~~~~HPDk~~---~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~f~  139 (193)
                      +.|+|.+|||+  ...+++.+|.++.++.+.+||||+..   +.+..+.|+.|+.||+||+|+.+|..||.-....+.  
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv--  119 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV--  119 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCC--
Confidence            38999999996  56789999999999999999999973   456789999999999999999999999976543222  


Q ss_pred             ccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCc
Q 048108          140 MSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQ  180 (193)
Q Consensus       140 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~  180 (193)
                       .-|.-+.+++      |+..|...+.+-.+++..++|+-.
T Consensus       120 -ppp~~~t~~~------Ffe~w~pvFe~earFSkKqPvPsL  153 (379)
T COG5269         120 -PPPRIYTPDE------FFEVWEPVFEREARFSKKQPVPSL  153 (379)
T ss_pred             -CCccCCCchh------HHHHHHHHHHhhhhccccCCCCCC
Confidence             2344555666      999999988888888887777543

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.21  E-value=3.3e-11  Score=95.92  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             cchhhhhcCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~-~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||++|||| ....+...++++|++|.+.+|||+.....      +.+....||+||.+|+||.+|+.|=-.+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            5999999994 44589999999999999999999986533      34457899999999999999999987766

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.1e-11  Score=95.63  Aligned_cols=64  Identities=33%  Similarity=0.584  Sum_probs=58.6

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFD  129 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD  129 (193)
                      ..|+|+||.| .|..+.++||+.||+|+++.|||||++  +.|..+|..|.+||..|-|+..|..-+
T Consensus        52 nLNpfeVLqI-dpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   52 NLNPFEVLQI-DPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ccChHHHHhc-CCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3899999999 999999999999999999999999995  678899999999999999998766544

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.18  E-value=4.4e-11  Score=105.94  Aligned_cols=70  Identities=29%  Similarity=0.425  Sum_probs=64.3

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      +.-|+|+|||| +.+++..+||++||+|+.++||||.+.      ..-++.+..|++||+.|+|...|..|-.+|.+
T Consensus        96 ~~fDPyEILGI-~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP  171 (610)
T COG5407          96 RGFDPYEILGI-DQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP  171 (610)
T ss_pred             cCCChHHhhcc-cCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence            44899999999 999999999999999999999999875      34578899999999999999999999999876

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.07  E-value=2.8e-10  Score=89.33  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCc------hHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           79 VDISVIKKQFKKMALMLHPDKNSSV------AADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        79 a~~~~Ik~aYr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .+..+|+++|+++++++|||+.++.      .+.+.|..|++||++|+||.+|..|+-.+..
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g   64 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG   64 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            4778999999999999999996542      2567899999999999999999999988864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=2.2e-07  Score=89.65  Aligned_cols=53  Identities=26%  Similarity=0.450  Sum_probs=47.0

Q ss_pred             cchhhhhcCC---CCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108           66 STLYKILAIT---DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT  120 (193)
Q Consensus        66 ~d~Y~vLgv~---~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs  120 (193)
                      .+-|+||.|+   .+....+.||++|++|+.+|||||||  +..++|..|++||+.|+
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence            6789999996   34445689999999999999999996  77899999999999998

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=3.3e-07  Score=75.56  Aligned_cols=58  Identities=28%  Similarity=0.452  Sum_probs=53.1

Q ss_pred             ccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH-HcCC
Q 048108           63 ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANN-VLTD  121 (193)
Q Consensus        63 ~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsd  121 (193)
                      +.-..+|.|||| ..+++.++++.+|..|++++|||.+......+.|.+|.+||. ||+.
T Consensus        44 e~~~e~fril~v-~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   44 EKIMECFRILGV-EEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHHhcc-cccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            334899999999 999999999999999999999999998888899999999998 7764

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.7e-06  Score=63.04  Aligned_cols=54  Identities=26%  Similarity=0.403  Sum_probs=46.4

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCc
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG  123 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~  123 (193)
                      ..--.|||| +++++.+.||.++|++-+..|||+.++|--.   ..|++|+++|....
T Consensus        56 ~EA~lIL~v-~~s~~k~KikeaHrriM~~NHPD~GGSPYlA---sKINEAKdlLe~~~  109 (112)
T KOG0723|consen   56 REAALILGV-TPSLDKDKIKEAHRRIMLANHPDRGGSPYLA---SKINEAKDLLEGTS  109 (112)
T ss_pred             HHHHHHhCC-CccccHHHHHHHHHHHHHcCCCcCCCCHHHH---HHHHHHHHHHhccc
Confidence            455679999 9999999999999999999999999887543   45999999997543

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=6.4e-05  Score=58.43  Aligned_cols=70  Identities=20%  Similarity=0.351  Sum_probs=56.8

Q ss_pred             ccchhhhhcCC-CCCCCHHHHHHHHHHHHHhcCCCCCCC------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSS------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~-~~~a~~~~Ik~aYr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..+||.++|.. .....++.++.-|.-...++|||+...      .-+.+....|++||.+|.||-.|+.|=..+..
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            37899999874 445566677778999999999999553      23567789999999999999999999877654

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.53  E-value=0.00018  Score=65.29  Aligned_cols=71  Identities=23%  Similarity=0.333  Sum_probs=53.8

Q ss_pred             CccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch--------HHHHHHHHHHHHH
Q 048108           46 LPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA--------ADGAFKLIRSANN  117 (193)
Q Consensus        46 ~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~--------a~~~f~~i~~Ay~  117 (193)
                      ..+|+.||..++..|+.+.  . ++-.++ ..-.+.++||++|||.+|..||||.+..+        +++.|-.+++||.
T Consensus       371 E~NIRALLSTLh~VLW~es--~-WqpVsl-tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn  446 (453)
T KOG0431|consen  371 EGNIRALLSTLHYVLWPES--G-WQPVSL-TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN  446 (453)
T ss_pred             cccHHHHHHHHhHhhcCcc--C-cccCch-hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence            4469999999999998853  3 344466 66789999999999999999999987532        4555667777776


Q ss_pred             HcC
Q 048108          118 VLT  120 (193)
Q Consensus       118 vLs  120 (193)
                      ...
T Consensus       447 ~f~  449 (453)
T KOG0431|consen  447 KFN  449 (453)
T ss_pred             hhh
Confidence            543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.18  E-value=0.0014  Score=36.99  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      |+.+..+|..++..|++++|++.++++.+++|+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5678899999999999999999999999999973

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.16  E-value=0.0014  Score=37.35  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      |..+..+|..++..|+++.|+..+++|.+++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            567899999999999999999999999999996

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0016  Score=51.73  Aligned_cols=53  Identities=25%  Similarity=0.394  Sum_probs=46.1

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--------chHHHHHHHHHHHHHHc
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--------VAADGAFKLIRSANNVL  119 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--------~~a~~~f~~i~~Ay~vL  119 (193)
                      .+.|.+||+ ...++..+|+++|+++....|||+-..        ..+.++++.|++||+.+
T Consensus       113 ~~~l~~l~~-~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGV-EIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcC-chhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999 999999999999999999999998543        24677888999998753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.72  E-value=0.0041  Score=37.84  Aligned_cols=40  Identities=25%  Similarity=0.237  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      +.++.+|..+...|++++|++.++++.+.+|+...+...+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            4577899999999999999999999999999987655444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.38  E-value=0.0024  Score=41.90  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      .|..+..+|..++..|+++.|+..+.++..++|+...+--.+..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~   46 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA   46 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            578899999999999999999999999999999986544444444

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.34  E-value=0.0055  Score=40.19  Aligned_cols=41  Identities=24%  Similarity=0.288  Sum_probs=37.5

Q ss_pred             ccccCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 048108            4 MLKNLVKLAAEKARDAAEEYFKLQ-NIDMAIKTLKAAKEFNP   44 (193)
Q Consensus         4 ~~~e~~~~ea~~~~~~A~~~~~~~-d~~~A~~~~~~a~~l~p   44 (193)
                      -.++.|++.+..+..+|..++..| ++++|+.++.++.+++|
T Consensus        28 ~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   28 KAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            346678889999999999999999 79999999999999998

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.21  E-value=0.057  Score=47.76  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc----cchhhhhcCCCCCCCHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK----STLYKILAITDPQVDIS   82 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~----~d~Y~vLgv~~~~a~~~   82 (193)
                      -.++.++++-++++..+|..|++..|+..|..|..++|+.  ...+...+.+.++-.+.    .|+=.||.+ .|+....
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~A  108 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAA  108 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHH
Confidence            3578899999999999999999999999999999999987  45666666666654433    888889988 8877665


Q ss_pred             HHHHHH--------------HHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 048108           83 VIKKQF--------------KKMALMLHPDKNSSVAADGAFKLIRSAN  116 (193)
Q Consensus        83 ~Ik~aY--------------r~l~~~~HPDk~~~~~a~~~f~~i~~Ay  116 (193)
                      -|.+.-              -+.++...|..+...++.++...|.+-+
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~  156 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW  156 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence            554432              2234556665554444444444444433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.00  E-value=0.012  Score=38.87  Aligned_cols=48  Identities=25%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      +..+++....+..+|..++..|++.+|+..++++..+.|+...+..+.
T Consensus        22 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen   22 LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            445677788888889999999999999999999999999876554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.98  E-value=0.045  Score=35.11  Aligned_cols=49  Identities=16%  Similarity=0.040  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE   63 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~   63 (193)
                      .+.-+|..+.+.|+|+.|+++...+.++.|+...+..+...++..+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd   51 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD   51 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence            4556788999999999999999999999999998888888887665543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.003  Score=50.21  Aligned_cols=66  Identities=18%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             chhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           67 TLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        67 d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      |++..+|+ .+.  ...+.++..|+.+.+.+|||+.....      +.+.+..++.||.+|.||-+|..|=....
T Consensus         2 ~~~~~~~~-~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGL-PRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             Cccccccc-HHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            34445555 332  24556899999999999999987533      23468899999999999999999976655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.92  E-value=0.019  Score=32.28  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      |+.+..+|..+...||++.|+..+.++.+++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            467889999999999999999999999999983

...

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=95.72  E-value=0.026  Score=42.79  Aligned_cols=51  Identities=20%  Similarity=0.225  Sum_probs=36.4

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT  120 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs  120 (193)
                      ..-..|||| ++..+.++|.+.|.+|-...+|+++++.   -.-..|..|.+.|.
T Consensus        58 ~EA~~ILnv-~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf---YLQSKV~rAKErl~  108 (127)
T PF03656_consen   58 DEARQILNV-KEELSREEIQKRYKHLFKANDPSKGGSF---YLQSKVFRAKERLE  108 (127)
T ss_dssp             HHHHHHHT---G--SHHHHHHHHHHHHHHT-CCCTS-H---HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCC-CCccCHHHHHHHHHHHHhccCCCcCCCH---HHHHHHHHHHHHHH
Confidence            355789999 9999999999999999999999998654   34445777777765

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.64  E-value=0.017  Score=37.40  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=15.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ..|..++..|++++|+..++++...+|...
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~   31 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNP   31 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            344555555555555555555555555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.54  E-value=0.013  Score=38.15  Aligned_cols=46  Identities=22%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      +++..+..+.+|..++..|++++|...+.++...+|+.+.+..+++
T Consensus        21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen   21 NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3445556666777777777777777777777777777555555444

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.31  E-value=0.044  Score=30.29  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      +.++.+|..+...|+++.|+..+++....+|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            35788999999999999999999999999996

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.00  E-value=0.029  Score=32.56  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +..+|..+...|+|+.|+.+++++..+..++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            5789999999999999999999977665544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.84  E-value=0.14  Score=44.17  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .++..|+.++..+.++++.++|.+|+..|.+|..++|+..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA  115 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA  115 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence            3678999999999999999999999999999999999864

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=94.80  E-value=0.7  Score=38.51  Aligned_cols=97  Identities=15%  Similarity=0.255  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccc-hhhhhcCCCCCCCHHHHHHHHHHH--H
Q 048108           16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKST-LYKILAITDPQVDISVIKKQFKKM--A   92 (193)
Q Consensus        16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d-~Y~vLgv~~~~a~~~~Ik~aYr~l--~   92 (193)
                      .+.+|..+++.+|++.|+..+++..+++|+.+.+...+=..-... .....+ +-..+.++...-++...++|+..+  .
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~-~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l  150 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN-MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL  150 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh-hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence            456666666666666666666666666666665443221111000 000011 111233312233455566554433  2


Q ss_pred             HhcCCCCCCCchHHHHHHHHH
Q 048108           93 LMLHPDKNSSVAADGAFKLIR  113 (193)
Q Consensus        93 ~~~HPDk~~~~~a~~~f~~i~  113 (193)
                      ..-+|+..-.+.+..+...|.
T Consensus       151 i~~yP~S~ya~~A~~rl~~l~  171 (243)
T PRK10866        151 VRGYPNSQYTTDATKRLVFLK  171 (243)
T ss_pred             HHHCcCChhHHHHHHHHHHHH
Confidence            344687765555555544443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.66  E-value=0.36  Score=40.37  Aligned_cols=73  Identities=21%  Similarity=0.191  Sum_probs=53.2

Q ss_pred             CHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHH
Q 048108            9 VKLA-AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQ   87 (193)
Q Consensus         9 ~~~e-a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~a   87 (193)
                      ++.+ +..-+.+|..+|..||+..|+.-+++|.+.+|+.....-.++            -+|+-+|. .      +.-..
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A------------~~Yq~~Ge-~------~~A~e   90 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA------------HYYQKLGE-N------DLADE   90 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH------------HHHHHcCC-h------hhHHH
Confidence            4444 466789999999999999999999999999999964332222            35788887 3      33333


Q ss_pred             HHHHHHhcCCCCC
Q 048108           88 FKKMALMLHPDKN  100 (193)
Q Consensus        88 Yr~l~~~~HPDk~  100 (193)
                      +.+.++..+|+..
T Consensus        91 ~YrkAlsl~p~~G  103 (250)
T COG3063          91 SYRKALSLAPNNG  103 (250)
T ss_pred             HHHHHHhcCCCcc
Confidence            3444777888764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.66  E-value=0.054  Score=41.31  Aligned_cols=45  Identities=13%  Similarity=0.027  Sum_probs=37.6

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ...++..+..+..+|..+...|++++|+..+.++..++|.....-
T Consensus        51 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~   95 (144)
T PRK15359         51 VMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV   95 (144)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence            345677788889999999999999999999999999999875433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.052  Score=48.35  Aligned_cols=49  Identities=10%  Similarity=0.114  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV   58 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~   58 (193)
                      +...-.+.+++.+++..++|+.|+.++++|+.+.|+...|+.-|.++..
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3455667777777777777777777777777777777766666666654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.45  E-value=0.19  Score=46.35  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVI   84 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~I   84 (193)
                      |++.+...-++|.++++.+.+..|++++.++.+++|+..  ...+.....+..-.    .-..|++-|.+   +.+..++
T Consensus       388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~--kgy~RKg~al~~mk~ydkAleay~eale~---dp~~~e~  462 (539)
T KOG0548|consen  388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI--KAYLRKGAALRAMKEYDKALEAYQEALEL---DPSNAEA  462 (539)
T ss_pred             CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CchhHHH
Confidence            466667777777777777777777777777777777652  33333322221110    11567777766   5677888


Q ss_pred             HHHHHHHHHhcCCCCCCCchHHHHHHHHH---HHHHHcCCCchhhh
Q 048108           85 KKQFKKMALMLHPDKNSSVAADGAFKLIR---SANNVLTDPGKRKA  127 (193)
Q Consensus        85 k~aYr~l~~~~HPDk~~~~~a~~~f~~i~---~Ay~vLsd~~~R~~  127 (193)
                      -..|++.....|-|..+.    +..+...   +--.+|+||..|..
T Consensus       463 ~~~~~rc~~a~~~~~~~e----e~~~r~~~dpev~~il~d~~m~~~  504 (539)
T KOG0548|consen  463 IDGYRRCVEAQRGDETPE----ETKRRAMADPEVQAILQDPAMRQI  504 (539)
T ss_pred             HHHHHHHHHHhhcCCCHH----HHHHhhccCHHHHHHHcCHHHHHH
Confidence            899999888775555442    2222221   23345788777743

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.26  E-value=0.21  Score=41.25  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVIKKQ   87 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~Ik~a   87 (193)
                      .+..+.++|.+.++.+.++.|+....||..|+|+..  ..+...+..+-..+    .-.||-+||.+ .|  +..+.+++
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~-dP--s~~ear~~  207 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILES-DP--SRREAREA  207 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHh-Cc--chHHHHHH
Confidence            344555555555555555555555555555555542  22222222111111    11677777777 54  33355555


Q ss_pred             HHHH
Q 048108           88 FKKM   91 (193)
Q Consensus        88 Yr~l   91 (193)
                      -++|
T Consensus       208 i~rl  211 (271)
T KOG4234|consen  208 IARL  211 (271)
T ss_pred             HHhc
Confidence            4444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.16  E-value=0.35  Score=41.79  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +..+..+|..++..|++++|+..+.++.+.+|...
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            33455666777777777777777777777776643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=93.97  E-value=0.61  Score=37.54  Aligned_cols=48  Identities=13%  Similarity=0.062  Sum_probs=40.7

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      ...|++.++.|..+|..++..|+++.|+..+.+|.+++|+...+.-.+
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l  113 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL  113 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            345677888999999999999999999999999999999986544333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.91  E-value=0.72  Score=36.20  Aligned_cols=39  Identities=15%  Similarity=-0.003  Sum_probs=20.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +...+.-++++|..+-..|+|.+|+..|.+|..++|+.+
T Consensus        65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            344455555555555555555555555555555555544

>smart00028 TPR Tetratricopeptide repeats

Probab=93.89  E-value=0.12  Score=26.71  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      .+..+|..++..++++.|...+.++..++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4678899999999999999999999998885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.46  E-value=0.14  Score=33.02  Aligned_cols=42  Identities=19%  Similarity=0.123  Sum_probs=35.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+.+++.+..+..+|..++..|++++|+..++++..++|+.+
T Consensus        24 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   24 LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            345577899999999999999999999999999999999863

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=93.15  E-value=0.2  Score=36.65  Aligned_cols=50  Identities=18%  Similarity=0.094  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR   57 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~   57 (193)
                      .++.....+..+|..++..|+++.|...++++..++|+.....-.+..+.
T Consensus        46 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        46 YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            34556777888888888899999999999998888888765544444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.04  E-value=0.36  Score=37.22  Aligned_cols=48  Identities=15%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ   60 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~   60 (193)
                      +++++.+|...+..||+.-|..++..+...+|+...++++...+-..+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l  117 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL  117 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999988888877664433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.81  E-value=0.37  Score=36.21  Aligned_cols=43  Identities=14%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      ..+...++.++..|+++.|+..+.++..++|..+.+-..+..+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~  105 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRA  105 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4566777889999999999999999999999998766665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.73  E-value=0.24  Score=43.54  Aligned_cols=73  Identities=23%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCCC
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQV   79 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~a   79 (193)
                      ++.+++.+..+..+|..++..|+++.|+.++.+|..++|....+--.+..+-..+..  +....+-+.|.+ .++.
T Consensus        29 l~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-~P~~  103 (356)
T PLN03088         29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL-APGD  103 (356)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC
Confidence            445566778888999999999999999999999999999876443333333222211  112455566777 5543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.70  E-value=0.98  Score=31.91  Aligned_cols=42  Identities=10%  Similarity=0.007  Sum_probs=34.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+.|+++.......|..++..|++++|+..+....+.++...
T Consensus        15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen   15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            345778889999999999999999999999999999999873

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=92.48  E-value=0.82  Score=43.45  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH--------------HHhhcccc-cchhhhh
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR--------------VHQLSETK-STLYKIL   72 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~--------------~~~~~~~~-~d~Y~vL   72 (193)
                      .+++.+..+..+|..++..|++++|+..++++..++|....+...+..+-              ..+..... ..++-.+
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            34455667778888899999999999999999999998765444433322              11111111 1112111


Q ss_pred             cCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchh
Q 048108           73 AIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR  125 (193)
Q Consensus        73 gv~-~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R  125 (193)
                      |.- ...-..++-...|++ ++..+|+..+. .-.++...+.++++.+..+.++
T Consensus       359 a~al~~~G~~deA~~~l~~-al~~~P~~~~~-~~~ea~~~~~~~~~~~~~~~~~  410 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEH-YIQARASHLPQ-SFEEGLLALDGQISAVNLPPER  410 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHH-HHHhChhhchh-hHHHHHHHHHHHHHhcCCccch
Confidence            210 112234444555555 56677887653 3346778889999999888777

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=92.24  E-value=0.37  Score=38.82  Aligned_cols=46  Identities=9%  Similarity=-0.026  Sum_probs=26.5

Q ss_pred             CHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            9 VKLAAEKARDAAEEY-FKLQN--IDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~-~~~~d--~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      +++.+..+...|..+ +..|+  ++.|+..+.++.+++|+...+.-.+.
T Consensus       103 ~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA  151 (198)
T PRK10370        103 RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA  151 (198)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            445556666666653 45555  36666666666666666654443333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.21  E-value=0.73  Score=41.97  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      -+.+++.++.+.++|..++..|+|++|+..+++|..++|+...
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae  110 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE  110 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence            3567788999999999999999999999999999999999753

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=91.79  E-value=0.13  Score=34.32  Aligned_cols=47  Identities=19%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             ccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEe-cccC
Q 048108          136 KVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVI-LRNC  193 (193)
Q Consensus       136 ~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~-~~~c  193 (193)
                      ......|+.|...+.      ....     ..-+.........|+.|+|+|.+| .++|
T Consensus        12 ~~~~~~C~~C~G~G~------~~~~-----~~~~~~~~~~~~~C~~C~G~G~~i~~~~C   59 (66)
T PF00684_consen   12 GKKPKTCPQCNGSGQ------VTRR-----QQTPGGVFQMQQTCPKCGGTGKIIEKDPC   59 (66)
T ss_dssp             TTT-EE-TTSSSSSE------EEEE-----EESSSTTEEEEEE-TTTSSSSEE-TSSB-
T ss_pred             CCCCcCCcCCCCeeE------EEEE-----EeCCCeEEEEEEECCCCcceeeEECCCCC
Confidence            344568888888875      1110     111223455668899999999999 8877

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.65  E-value=1.5  Score=33.93  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      ..|.++..++..++++.|+.-+.+-.+|+|+.+.+
T Consensus        49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            44566666666666666666666666666666543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.42  E-value=0.51  Score=40.72  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |..-++.++..|..+-++|..|.+.|.++.|+++.+.|..+||...
T Consensus       104 Y~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys  149 (304)
T KOG0553|consen  104 YTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS  149 (304)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence            3344677788888888899999999999999999999999988763

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=91.17  E-value=0.72  Score=35.02  Aligned_cols=34  Identities=6%  Similarity=-0.126  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +..+|..++..|++++|+..+.++..++|.....
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a   60 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA   60 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            5568999999999999999999999999987543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=90.61  E-value=0.82  Score=33.36  Aligned_cols=46  Identities=17%  Similarity=0.139  Sum_probs=40.3

Q ss_pred             cccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            5 LKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         5 ~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      .++.+++.+.....+|..++..|++++|+..+.++..++|....+.
T Consensus         9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   54 (135)
T TIGR02552         9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYW   54 (135)
T ss_pred             HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Confidence            3567788889999999999999999999999999999999875443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.42  E-value=0.88  Score=26.06  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNP   44 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p   44 (193)
                      |..+.++|..+...|++++|+.+++++..+.-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            45567899999999999999999999987644

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.20  E-value=0.93  Score=27.88  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=25.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +++|..|+.+||.++|+..++.... .++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~   31 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE-EGDE   31 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH-cCCH
Confidence            5789999999999999999999994 4443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.02  E-value=0.11  Score=29.86  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=28.1

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAI   33 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~   33 (193)
                      |+-..|.|++.++.+..+|..+...||++.|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34557888999999999999999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=89.90  E-value=1  Score=38.34  Aligned_cols=40  Identities=18%  Similarity=0.136  Sum_probs=26.2

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+++.+..+..+|..+...|++++|+..+.++.+++|+..
T Consensus        93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            3444555666666677777777777777777777777653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=89.77  E-value=0.91  Score=39.87  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      -.++..|..++..|+|+.|+..+.+|.+++|....+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a   38 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAEL   38 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            357888999999999999999999999999987543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=89.54  E-value=1.1  Score=29.67  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEF   42 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l   42 (193)
                      ++-|..+..+|..+...|+++.|+.++++|..+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999987

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.50  E-value=0.67  Score=29.79  Aligned_cols=34  Identities=32%  Similarity=0.463  Sum_probs=27.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108           23 YFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus        23 ~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      ++..|++++|+..+.++...+|....+.-.+..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~   34 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQC   34 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            4789999999999999999999986655544444

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.20  E-value=1.5  Score=39.20  Aligned_cols=76  Identities=16%  Similarity=0.273  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHHHHHHHH
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVIKKQFKK   90 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~Ik~aYr~   90 (193)
                      ..+++|.+++++++|..|+....+++.++|..  +..+...-+.++...    ...||-++|.+ .|+-  .+|+....+
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~N--ka~~~el~~  333 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKL-EPSN--KAARAELIK  333 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCc--HHHHHHHHH
Confidence            35789999999999999999999999999998  466666666555433    23778888888 5533  666666666


Q ss_pred             HHHhc
Q 048108           91 MALML   95 (193)
Q Consensus        91 l~~~~   95 (193)
                      |..+.
T Consensus       334 l~~k~  338 (397)
T KOG0543|consen  334 LKQKI  338 (397)
T ss_pred             HHHHH
Confidence            65544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=88.68  E-value=12  Score=33.05  Aligned_cols=40  Identities=18%  Similarity=0.095  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +=|-.+-++|..++.+.|.+.|+..+.||.+.+|+...+.
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs  217 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS  217 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh
Confidence            4466777788888888888888888888888888864333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=88.37  E-value=3.3  Score=34.74  Aligned_cols=95  Identities=16%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH--------------HHHHHHHHHHhhc---ccccchh
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI--------------DDYFTACRVHQLS---ETKSTLY   69 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i--------------~~~l~~~~~~~~~---~~~~d~Y   69 (193)
                      +.++.-...++.+|..+...|+.+.|.+.|++|..++|...++              .+-+..++..+..   ....+-|
T Consensus        63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~  142 (250)
T COG3063          63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL  142 (250)
T ss_pred             HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence            3456677888999999999999999999999999999986432              1222222221111   1225556


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 048108           70 KILAITDPQVDISVIKKQFKKMALMLHPDKNS  101 (193)
Q Consensus        70 ~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~  101 (193)
                      +-||+=.-.+...+-.+.|-+.++.+.|+..+
T Consensus       143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~  174 (250)
T COG3063         143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPP  174 (250)
T ss_pred             hhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence            66665122234456677888889999998875

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=88.18  E-value=0.61  Score=40.49  Aligned_cols=55  Identities=29%  Similarity=0.398  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCC-----CchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108           78 QVDISVIKKQFKKMALMLHPDKNS-----SVAADGAFKLIRSANNVLTDPGKRKAFDNRI  132 (193)
Q Consensus        78 ~a~~~~Ik~aYr~l~~~~HPDk~~-----~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~  132 (193)
                      .++..+|..+|+..++..||++..     ....++-|+.|.+||.+|++...|..+|...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            356788999999999999999874     2345677999999999999876666666554

>PRK12370 invasion protein regulator; Provisional

Probab=88.12  E-value=5.3  Score=37.06  Aligned_cols=42  Identities=12%  Similarity=-0.077  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+++.+..+..+|..+...|++++|...+++|.+++|+...+
T Consensus       333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a  374 (553)
T PRK12370        333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI  374 (553)
T ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            344555556667777888899999999999999999987543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=88.09  E-value=1.8  Score=28.12  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=28.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108           20 AEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus        20 A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      +..++..+||+.|+..++++..++|.....-...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   35 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQR   35 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence            4678999999999999999999999976444333

>PF14901 Jiv90: Cleavage inducing molecular chaperone

Probab=87.60  E-value=0.18  Score=36.17  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             cccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcce
Q 048108          137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKI  187 (193)
Q Consensus       137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~  187 (193)
                      .....|..|++.+.               ..++....+.|+||++|++...
T Consensus         3 ~n~i~C~~C~~~H~---------------r~~t~r~~~~AR~C~~C~~~H~   38 (94)
T PF14901_consen    3 SNTIRCDKCGGKHK---------------RIETDRPPSAARYCQDCKIRHP   38 (94)
T ss_pred             cceeechhhCCeee---------------eEEecCchhhhHhHHHhhhhcc
Confidence            45578989999998               8888889999999999998753

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=87.00  E-value=0.77  Score=31.17  Aligned_cols=41  Identities=22%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      +...++.+|.+++..|+++.|+..+.+ ...+|....+.-++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~   64 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLL   64 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHH
Confidence            667788899999999999999999999 66777654444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.29  E-value=1.5  Score=36.34  Aligned_cols=51  Identities=18%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      +|.|+.--.++.++|+.|-++..|+.|+.+|.+.+.++|....+++-+..+
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            455665556667789999999999999999999999999987666555444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=86.29  E-value=12  Score=32.18  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +++.....+.+|..++..|++++|+..+.++...+|..
T Consensus       210 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        210 DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            34456677788899999999999999999999888764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=86.25  E-value=2.4  Score=39.68  Aligned_cols=45  Identities=22%  Similarity=0.265  Sum_probs=35.4

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      |.|+-+.-.+.|..+.+.|..++..|+|+.|+..|.++..+.|+.
T Consensus       116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~  160 (615)
T TIGR00990       116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP  160 (615)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence            344433223457889999999999999999999999999999964

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.10  E-value=1.5  Score=40.45  Aligned_cols=37  Identities=27%  Similarity=0.331  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      ...|..+..++..++..|.|+.|+++|..|..++|+.
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e  148 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE  148 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC
Confidence            5678999999999999999999999999999999994

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=86.08  E-value=16  Score=29.22  Aligned_cols=36  Identities=25%  Similarity=0.190  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      ..+...+..|..++..|+++.|+..++++...+|..
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~   66 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS   66 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            345556666666666666666666666666666654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.89  E-value=1.5  Score=26.02  Aligned_cols=30  Identities=23%  Similarity=0.190  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEF   42 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l   42 (193)
                      |+-+..+|+..+..++|+.|+.++.++..+
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345678999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=85.71  E-value=7.5  Score=37.49  Aligned_cols=113  Identities=11%  Similarity=0.038  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH--------------HHHHHHHHHHhhcc-cccchhhhhcCC
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI--------------DDYFTACRVHQLSE-TKSTLYKILAIT   75 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i--------------~~~l~~~~~~~~~~-~~~d~Y~vLgv~   75 (193)
                      ..++..+.+|+..++.|.+++|...++.+.++.|....+              ++-+..++..+..+ ...+.+-.++.-
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            357888899999999999999999999999999986432              33333333333332 123333333331


Q ss_pred             -CCCCCHHHHHHHHHHHHHhcCCCCCCC-----------chHHHHHHHHHHHHHHcCCCch
Q 048108           76 -DPQVDISVIKKQFKKMALMLHPDKNSS-----------VAADGAFKLIRSANNVLTDPGK  124 (193)
Q Consensus        76 -~~~a~~~~Ik~aYr~l~~~~HPDk~~~-----------~~a~~~f~~i~~Ay~vLsd~~~  124 (193)
                       ..--..++--..|+++.. -|||....           ...+++.....+|.+..++-.+
T Consensus       164 l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        164 WDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             HHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence             122245666778999888 88874321           2345666667777777777663

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=85.51  E-value=1.7  Score=36.14  Aligned_cols=40  Identities=30%  Similarity=0.328  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      .++..+..+|..+.+.|+++.|++++++|.+++|..+.+.
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~  183 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDAR  183 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            5678889999999999999999999999999999976543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.39  E-value=1.7  Score=37.37  Aligned_cols=48  Identities=19%  Similarity=0.060  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA   55 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~   55 (193)
                      -|+++++.|.-++..++..|++..|..-|.+|.++.|+.+++--.+..
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~ae  198 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE  198 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            367889999999999999999999999999999999998654433333

>PRK11189 lipoprotein NlpI; Provisional

Probab=84.98  E-value=20  Score=30.39  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .|..+..+|..+...|+++.|+..+.+|..++|+...+
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a  100 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA  100 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence            37889999999999999999999999999999997543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=84.41  E-value=5.6  Score=27.66  Aligned_cols=32  Identities=25%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      -+...|..++..|++++|...+.++...+|..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~   35 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS   35 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            34556666666666666666666666666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=84.30  E-value=4.1  Score=40.38  Aligned_cols=39  Identities=18%  Similarity=0.065  Sum_probs=34.8

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +++....++.+|...++.+||.+|+.+|.+|.+++|...
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~  198 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK  198 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence            346678899999999999999999999999999999753

>PF13446 RPT: A repeated domain in UCH-protein

Probab=83.59  E-value=2.8  Score=27.19  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=23.9

Q ss_pred             chhhhhcCCCCCCCHHHHHHHHHHHHH
Q 048108           67 TLYKILAITDPQVDISVIKKQFKKMAL   93 (193)
Q Consensus        67 d~Y~vLgv~~~~a~~~~Ik~aYr~l~~   93 (193)
                      +-|++||| +++.+.+.|-.+|+....
T Consensus         6 ~Ay~~Lgi-~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    6 EAYEILGI-DEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHhCc-CCCCCHHHHHHHHHHHHH
Confidence            56999999 999999999999999877

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.44  E-value=1.7  Score=23.11  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLK   37 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~   37 (193)
                      ...+.+|..++..||+++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356788999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK14285 chaperone protein DnaJ; Provisional

Probab=83.41  E-value=0.95  Score=40.08  Aligned_cols=17  Identities=18%  Similarity=0.223  Sum_probs=9.8

Q ss_pred             ccCccCCCcceEecccC
Q 048108          177 IFCQCQGRRKIVILRNC  193 (193)
Q Consensus       177 ~~C~~C~~~~~v~~~~c  193 (193)
                      ..|+.|+|+|.++.++|
T Consensus       186 ~~C~~C~G~G~~~~~~C  202 (365)
T PRK14285        186 TTCPKCYGNGKIISNPC  202 (365)
T ss_pred             eecCCCCCcccccCCCC
Confidence            45666666665555555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=83.28  E-value=8.2  Score=36.10  Aligned_cols=39  Identities=13%  Similarity=-0.039  Sum_probs=28.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++..+..+..++..++..|++++|+..++++..++|...
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            356667777777777777777777777777777777653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=83.18  E-value=19  Score=27.69  Aligned_cols=39  Identities=10%  Similarity=-0.100  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +..+|......|..++..|++++|+..+.++..+.|+..
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   69 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN   69 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence            456788899999999999999999999999999988764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=82.95  E-value=3.1  Score=27.43  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN   43 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~   43 (193)
                      +-|..+.++|..+...|+++.|+.++++|..+.
T Consensus        44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   44 DTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            348889999999999999999999999998763

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=82.71  E-value=12  Score=31.64  Aligned_cols=35  Identities=23%  Similarity=0.126  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           13 AEKARDAAEEY-FKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        13 a~~~~~~A~~~-~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .....+.|..+ +..|+|++|+..+.+....+|+..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~  177 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST  177 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc
Confidence            44556666665 556778888888888888777753

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known

Probab=82.67  E-value=9.3  Score=32.61  Aligned_cols=85  Identities=9%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHh
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALM   94 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~   94 (193)
                      .........+..|||.+|+..+...+.+--...++.-+    +.+..  +-.+.+..        ..+.+...+.+++..
T Consensus       129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~----~~L~~--~L~e~~~~--------i~~~ld~~l~~~~~~  194 (291)
T PF10475_consen  129 QTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCV----RHLSS--QLQETLEL--------IEEQLDSDLSKVCQD  194 (291)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHH----HHHhH--HHHHHHHH--------HHHHHHHHHHHHHHh
Confidence            34455667889999999999999888875433332111    11100  00233322        334677788888876


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHcCCC
Q 048108           95 LHPDKNSSVAADGAFKLIRSANNVLTDP  122 (193)
Q Consensus        95 ~HPDk~~~~~a~~~f~~i~~Ay~vLsd~  122 (193)
                      +.|         ..|..|.+||..|++.
T Consensus       195 Fd~---------~~Y~~v~~AY~lLgk~  213 (291)
T PF10475_consen  195 FDP---------DKYSKVQEAYQLLGKT  213 (291)
T ss_pred             CCH---------HHHHHHHHHHHHHhhh
Confidence            655         4677889999999854

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=82.52  E-value=4.3  Score=25.58  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+..+|..++..|+++.|+..+.++....|...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   34 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA   34 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence            357789999999999999999999999999875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=81.58  E-value=1.8  Score=36.56  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      ..+.+...+..++..||+..|+..+++|.++.|+.......+
T Consensus        99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            333444466677777777777777777777777765444333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=81.54  E-value=7.3  Score=31.22  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +.+|..++..|++..|+..+.++...+|+.+.
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPA  201 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence            47788999999999999999999999997643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=81.50  E-value=2.5  Score=33.22  Aligned_cols=54  Identities=22%  Similarity=0.143  Sum_probs=43.3

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL   61 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~   61 (193)
                      .+++.++-....|.++|..|+.+.|++-+..|..+.-..+.-..+...++..+.
T Consensus        98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363         98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            456778888899999999999999999999999999666655666666655443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=81.32  E-value=26  Score=27.97  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +..+...|..++..|+|..|+..+.+....+|..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s   38 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS   38 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            4444555555555555555555555555555543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=80.38  E-value=8.3  Score=34.02  Aligned_cols=42  Identities=24%  Similarity=0.153  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+..||..+++.|......|..+.|.+.++.|..+.|+.+++
T Consensus       111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~  152 (472)
T KOG3824|consen  111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI  152 (472)
T ss_pred             hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH
Confidence            456899999999999999999999999999999999998643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=80.30  E-value=7.3  Score=27.05  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +...+.+|..++..|+++.|+..+.++...+|......
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   76 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAP   76 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence            45677889999999999999999999999999875433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.26  E-value=9.1  Score=36.76  Aligned_cols=46  Identities=22%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |+...+.+++=|..+-++|..+-+.|++++|+..|..|.++.|+..
T Consensus       377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA  422 (966)
T KOG4626|consen  377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA  422 (966)
T ss_pred             HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence            4556788888999999999999999999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		3e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		6e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-05
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		3e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		4e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		5e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		9e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		3e-04
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-04
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		5e-04
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		8e-04

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 62  SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD 121
           S +    Y+IL ++    D   +KK ++++AL  HPDKN +  A  AFK I +A  VL++
Sbjct: 3   SGSSGDYYEILGVSRGASDED-LKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN 61
Query: 122 PGKRKAFD 129
           P KRK +D
Sbjct: 62  PEKRKQYD 69

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 68  LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA 127
            Y+ L +     D   IK+ +++ AL  HPDKN    A+  FK I  A +VL+DP KR+ 
Sbjct: 5   YYQTLGLARGASD-EEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 128 FDNRIRLNKVKLMSCSC 144
           FD   R  +  L    C
Sbjct: 64  FD---RYGEEGLKGSGC 77

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDP 122
            K   Y+IL ++    +   I+K +K++A+  HPD+N     A+  FK I+ A  VLTD 
Sbjct: 1   AKQDYYEILGVSKT-AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
Query: 123 GKRKAFDN 130
            KR A+D 
Sbjct: 60  QKRAAYDQ 67

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 57  RVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRS 114
           R   LS +  +LY +L + D       IKK ++K+AL  HPDKN  +  AAD  FK I +
Sbjct: 8   RQRSLSTSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEINN 65
Query: 115 ANNVLTDPGKRKAFD 129
           A+ +LTD  KR  +D
Sbjct: 66  AHAILTDATKRNIYD 80

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDP 122
            K   Y+IL ++    +   I+K +K++A+  HPD+N     A+  FK I+ A  VLTD 
Sbjct: 1   AKQDYYEILGVS-KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
Query: 123 GKRKAFDN 130
            KR A+D 
Sbjct: 60  QKRAAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDP 122
            K   Y+IL ++    +   I+K +K++A+  HPD+N     A+  FK I+ A  VLTD 
Sbjct: 1   AKQDYYEILGVS-KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59
Query: 123 GKRKAFDN 130
            KR A+D 
Sbjct: 60  QKRAAYDQ 67

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA--FKLIRSANNVLTDP 122
           ++  Y +L +  P    + +KK ++KMAL  HPDKN     DGA  FK I  A  VL+D 
Sbjct: 7   ETGYYDVLGVK-PDASDNELKKAYRKMALKFHPDKN----PDGAEQFKQISQAYEVLSDE 61
Query: 123 GKRKAFD 129
            KR+ +D
Sbjct: 62  KKRQIYD 68

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 17  RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITD 76
           +D AE Y   +  D AI+  + A+E N +   I +     +       K   YKIL +  
Sbjct: 333 KDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 77  PQVDISVIKKQFKKMALMLHPD----KNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130
                 +IK  ++K+AL  HPD    +     A+  F  I +A  VL+DP  RK FD+
Sbjct: 393 NAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFDD 449

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 84  IKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           IKK F K+A+  HPDKN S  A+  F+ I  A   L+D  +RK +D
Sbjct: 24  IKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGK 124
           ++T Y +L +  P      +KK ++K+AL  HPDKN +      FK I  A  VL+D  K
Sbjct: 5   ETTYYDVLGVK-PNATQEELKKAYRKLALKYHPDKNPNEGE--KFKQISQAYEVLSDAKK 61
Query: 125 RKAFD 129
           R+ +D
Sbjct: 62  RELYD 66

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 17  RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITD 76
           +D AE Y   +  D AI+  + A+E N +   I +     +       K   YKIL +  
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 77  PQVDISVIKKQFKKMALMLHPD----KNSSVAADGAFKLIRSANNVLTDPGKRKAFDN 130
                 +IK  ++K+AL  HPD    +     A+  F  I +A  VL+DP  RK FD+
Sbjct: 393 NAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 62  SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVL 119
           S   +  Y++L +         IKK ++K+AL  HPDKN  +   A+  FKL+  A  VL
Sbjct: 5   SSGMANYYEVLGVQ-ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63
Query: 120 TDPGKRKAFD 129
           +D  KR  +D
Sbjct: 64  SDSKKRSLYD 73

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 61  LSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT 120
           + ETK  LY +L ++ P  +   +KK ++K AL  HPDK +       FK I  A  +L 
Sbjct: 5   VKETK--LYDLLGVS-PSANEQELKKGYRKAALKYHPDKPTGDTE--KFKEISEAFEILN 59
Query: 121 DPGKRKAFD 129
           DP KR+ +D
Sbjct: 60  DPQKREIYD 68

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 84  IKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDPGKRKAFD 129
           I++ FKK+AL LHPDKN ++  A G F  I  A  VL D   RK +D
Sbjct: 38  IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYD 84

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 68  LYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKR 125
            Y++L +   Q     IKK ++K+AL  HPDKN      A+  FK +  A  VL+D  KR
Sbjct: 11  YYEVLDVPR-QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 126 KAFD 129
             +D
Sbjct: 70  DIYD 73

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 69  YKILAI--TDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRK 126
           Y++L +  T  Q DI   KK +KK+A   HPDKN    A+  F  I  A  +L++  KR 
Sbjct: 20  YRVLGVSRTASQADI---KKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 127 AFDN 130
            +D+
Sbjct: 77  NYDH 80

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y I+ +  P  D+  IK  ++++A   HPD +    A+  FK +  A  VL+D  +R  +
Sbjct: 8   YAIMGVK-PTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 129 DN 130
           D 
Sbjct: 67  DQ 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-15
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	7e-13
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	8e-12
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	9e-12
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-11
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-11
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	4e-11
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	4e-11
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-11
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-11
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	6e-11
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	9e-11
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-10
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-10
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-10
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-10
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-10
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-10
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-10
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	5e-10
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	9e-10
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-09
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	4e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-08
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	5e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	7e-08
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	5e-07
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-06
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	4e-06
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-05
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	4e-04

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 71.3 bits (175), Expect = 5e-15
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 20  AEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQV 79
           AE Y   +  D AI+  + A+E N +   I +     +       K   YKIL +     
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV-KRNA 394

Query: 80  DISVIKKQFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTDPGKRKAFDN 130
               I K ++K+AL  HPD   +      A+  F  I +A  VL+DP  RK FD+
Sbjct: 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 60.5 bits (147), Expect = 7e-13
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           + +L +  P      + K ++K+A++LHPDK  +  ++ AFK + +A   L    K    
Sbjct: 30  WDMLGV-KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS 88

Query: 129 D 129
            
Sbjct: 89  S 89

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 57.6 bits (140), Expect = 8e-12
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y+ L +         IK+ +++ AL  HPDKN    A+  FK I  A +VL+DP KR+ F
Sbjct: 6   YQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64

Query: 129 D 129
           D
Sbjct: 65  D 65

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 58.2 bits (141), Expect = 9e-12
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 57  RVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSA 115
           R   LS +  +LY +L + D       IKK ++K+AL  HPDKN  +  A   FK I +A
Sbjct: 8   RQRSLSTSGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNA 66

Query: 116 NNVLTDPGKRKAFDN 130
           + +LTD  KR  +D 
Sbjct: 67  HAILTDATKRNIYDK 81

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 60  QLSETKSTLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNV 118
            + E    L  +L +      +I +++K + K     HPDK      +   K + +    
Sbjct: 2   HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKK 58

Query: 119 LTDPGKRKAFD 129
           + D  K     
Sbjct: 59  MEDGVKYAHQP 69

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA-------ADGAFKLIRSANN 117
           K   Y IL   DP  +IS +K++++K+ LM HPDK S+             F  I  A  
Sbjct: 9   KKDWYSILGA-DPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67

Query: 118 VLTDPGKRKAFD 129
           +L +   ++ +D
Sbjct: 68  ILGNEETKREYD 79

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 57  RVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSAN 116
            +  LS      Y++L +       + IKK +KK+A   HPDKN    A+  F  I  A 
Sbjct: 8   ILQSLSALDFDPYRVLGV-SRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAY 66

Query: 117 NVLTDPGKRKAFD 129
            +L++  KR  +D
Sbjct: 67  EILSNEEKRTNYD 79

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y IL +  P  D+  IK  ++++A   HPD +    A+  FK +  A  VL D  +R  +
Sbjct: 31  YAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89

Query: 129 D 129
           D
Sbjct: 90  D 90

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN----SSVAADGAFKLIRSANNVLTDPGK 124
           Y +L +   + D   + K ++ +A   HPD+       + A+  F++I +A   L D   
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 125 RKAFD 129
           +  +D
Sbjct: 78  KTNYD 82

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKA 127
           Y +L +         I++ FKK+AL LHPDKN  +  A G F  I  A  VL D   RK 
Sbjct: 5   YSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63

Query: 128 FDN 130
           +D 
Sbjct: 64  YDK 66

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 55.8 bits (135), Expect = 6e-11
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVLTDPGKRK 126
           Y+IL +         IKK +++ AL  HPDKN  +   A+  FK +  A  VL+D  KR+
Sbjct: 5   YEILDV-PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63

Query: 127 AFD 129
            +D
Sbjct: 64  IYD 66

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 54.6 bits (132), Expect = 9e-11
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y+IL +         +KK ++++AL  HPDKN +  A  AFK I +A  VL++P KRK +
Sbjct: 10  YEILGV-SRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68

Query: 129 D 129
           D
Sbjct: 69  D 69

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
           +  + Y IL +         IKK F K+A+  HPDKN S  A+  F+ I  A   L+D  
Sbjct: 5   SSGSYYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDAN 63

Query: 124 KRKAFD 129
           +RK +D
Sbjct: 64  RRKEYD 69

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
            ++ LY +L +  P  +   +KK ++K AL  HPDK +       FK I  A  +L DP 
Sbjct: 6   KETKLYDLLGV-SPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQ 62

Query: 124 KRKAFD 129
           KR+ +D
Sbjct: 63  KREIYD 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPG 123
            ++  Y +L +  P    + +KK ++KMAL  HPDKN        FK I  A  VL+D  
Sbjct: 6   KETGYYDVLGV-KPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEK 62

Query: 124 KRKAFD 129
           KR+ +D
Sbjct: 63  KRQIYD 68

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 64  TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDP 122
           +++ LY +L +       + IK  + +   + HPD+NS S  A   F  I  A  VL   
Sbjct: 15  SRTALYDLLGV-PSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSA 73

Query: 123 GKRKAFD 129
             R+ +D
Sbjct: 74  TLRRKYD 80

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 63  ETKSTLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD 121
           E    L  +L +      +I +++K + K     HPDK      +   K + +    + D
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMED 64

Query: 122 PGKRKAFDN 130
             K     +
Sbjct: 65  GVKYAHQPD 73

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPG 123
           K   Y+IL +     +   I+K +K++A+  HPD+N     A+  FK I+ A  VLTD  
Sbjct: 2   KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 124 KRKAFDN 130
           KR A+D 
Sbjct: 61  KRAAYDQ 67

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 62  SETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLT 120
           SE     Y +L   D    +  I  +FK  AL  HPDK+  +  A   F+ ++ A  +LT
Sbjct: 16  SEDTEDYYTLLGC-DELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74

Query: 121 DPGKRKAFD 129
           +   R  +D
Sbjct: 75  NEESRARYD 83

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 53.2 bits (128), Expect = 5e-10
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN-------SSVAADGAFKLIRSANNVLTD 121
           Y IL   DP  ++S +K++++K+ L+ HPDK        +       F  I  A  +L +
Sbjct: 19  YSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77

Query: 122 PGKRKAFD 129
              +K +D
Sbjct: 78  EETKKKYD 85

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 52.3 bits (126), Expect = 9e-10
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVLTDPGKRK 126
           Y++L +         IKK ++K+AL  HPDKN  +   A+  FKL+  A  VL+D  KR 
Sbjct: 12  YEVLGV-QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70

Query: 127 AFD 129
            +D
Sbjct: 71  LYD 73

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSANNVLTDPGKRK 126
           Y++L +   Q     IKK ++K+AL  HPDKN  +   A+  FK +  A  VL+D  KR 
Sbjct: 12  YEVLDV-PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70

Query: 127 AFD 129
            +D
Sbjct: 71  IYD 73

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKN-SSVAADGAFKLIRSANNVLTDPGKRKA 127
           Y+IL +         IKK + ++A   HPD N     A   F  +  A  VL+D  KRK 
Sbjct: 10  YQILGV-PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68

Query: 128 FD 129
           +D
Sbjct: 69  YD 70

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 59  HQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANN 117
           H         Y +L +         I++ FKK+AL LHPDKN  +  A G F  I  A  
Sbjct: 14  HIEGRHDQNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72

Query: 118 VLTDPGKRKAFDNR 131
           VL D   RK +D  
Sbjct: 73  VLKDEDLRKKYDKY 86

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 63  ETKSTLYKILAI-TDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD 121
             K  L ++L +      D   +++ +K+ +L+LHPDK  S A     + + S       
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA---LMQELNSLWGTFKT 64

Query: 122 PGKRKAFDN 130
                  + 
Sbjct: 65  EVYNLRMNL 73

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 49.5 bits (117), Expect = 7e-08
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 13  AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKIL 72
                   E   ++    + I      KE N              +H +     T +K +
Sbjct: 71  TIAEMRKEEMAKEMDPEKLKILEWIEGKERNI-------RALLSTMHTVLWAGETKWKPV 123

Query: 73  AITDPQVDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTDPGKRKAF 128
            + D  V    +KK ++K  L++HPDK +       A   F  +  A +   + G++  +
Sbjct: 124 GMAD-LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 58  VHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKN--SSVAADGAFKLIRSA 115
           +         +  ++     ++  S  KK  +++ L  HPDKN  +   A+  FK +++ 
Sbjct: 8   LVPRGSILKEVTSVVEQ-AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNE 66

Query: 116 NNVLTDPGKRKAFDN 130
            N L    K+   D 
Sbjct: 67  INRL---EKQAFLDQ 78

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 69  YKILAITDP------QVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDP 122
           Y++   T P       +D S ++K+++++    HPD             +  A + L DP
Sbjct: 14  YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDP 71

Query: 123 GKRKAFDNRIR 133
            +R  +  ++ 
Sbjct: 72  LRRSQYMLKLL 82

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRK 126
            +IL +T+  +    +K+  +K+ L  HPDK  S         I  A + L   G  K
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGISK 71

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 69  YKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSV------AADGAFKLIRSANNVLTD 121
           + +  +    Q+D   +  +F+ +    HPDK +S       AA      I  A   L  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 122 PGKR 125
           P  R
Sbjct: 64  PLMR 67

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 39.2 bits (91), Expect = 8e-05
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 56  CRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKL 111
             +H +     T +K + + D  V    +KK ++K  L++HP K +       A   F  
Sbjct: 23  STMHTVLWAGETKWKPVGMAD-LVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFME 81

Query: 112 IRSANNVLTD 121
           +  A +   +
Sbjct: 82  LNDAWSEFEN 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 25/172 (14%), Positives = 48/172 (27%), Gaps = 46/172 (26%)

Query: 8   LVKLAAEKARDAAE--EYFKLQNIDMAIKTLKAA-KEFNPDLPNIDDYFTACRVHQLSET 64
            + + AE  RD     + +K  N D     ++++     P        F    V      
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRLSVFP---- 382

Query: 65  KSTL--YKILAI-------TDPQVDI------SVIKKQFKKMALMLHPDKNSSVAADGAF 109
            S      +L++       +D  V +      S+++KQ K+  + +              
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---------SIYL 433

Query: 110 KLIRSANNVLTDPGKRKAFDNRIRLNKVKLMSCSCCRPQGAGDNNSPRASTY 161
           +L     N         A    I ++   +            D   P    Y
Sbjct: 434 ELKVKLEN-------EYALHRSI-VDHYNIPKTFDS-----DDLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 39/220 (17%)

Query: 4   MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTL-----KAAKEFNPDLPNIDDY-FTACR 57
           M K++  L+ E+          +        TL     +  ++F  ++    +Y F    
Sbjct: 41  MPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFLMSP 97

Query: 58  VHQLSETKSTLYKILA------ITDPQV----DISVIKK--QFKKMALMLHPDKNSSVAA 105
           +       S + ++          D QV    ++S ++   + ++  L L P KN  +  
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 106 DGAF-K--LIRSANNVLTDPGKRKAFDNRI------RLNK----VKLMSCSCCRPQGAGD 152
                K  +   A +V      +   D +I        N     ++++     +      
Sbjct: 158 VLGSGKTWV---ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 153 NNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVILRN 192
           + S  +S  K    S   +   + +         +++L N
Sbjct: 215 SRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLN 252

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLI 112
           +K + + D  ++ + ++K +++  L+LHPDK     A    K +
Sbjct: 43  WKPVPLMD-MIEGNAVRKSYQRALLILHPDKLQQKGASANQKYM 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.9
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.86
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.85
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.85
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.84
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.82
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.81
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.81
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.81
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.79
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.75
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.74
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.73
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.73
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.72
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.72
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.72
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.71
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.71
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.71
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.71
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.7
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.69
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.65
2guz_A	71	Mitochondrial import inner membrane translocase su	99.64
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.55
2guz_B	65	Mitochondrial import inner membrane translocase su	98.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.85
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.55
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.66
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	95.47
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.43
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.35
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.34
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.31
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.01
3k9i_A	117	BH0479 protein; putative protein binding protein,	94.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	94.82
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.73
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	94.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.38
2l6j_A	111	TPR repeat-containing protein associated with HSP;	94.35
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.28
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.23
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	94.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	94.09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	94.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.03
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	93.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	93.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	93.82
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	93.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	93.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.56
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.36
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.33
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	93.21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	93.15
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	93.14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	93.09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	93.08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	92.96
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	92.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	92.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.82
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	92.71
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	92.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	92.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	92.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	92.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	92.17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	92.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	92.1
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	92.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	91.88
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	91.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	91.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	91.67
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	91.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	91.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	91.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	91.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	91.47
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	91.2
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	91.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	90.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	90.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	90.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	90.81
2kat_A	115	Uncharacterized protein; NESG, structure, structur	90.71
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	90.37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	90.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	89.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	89.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	89.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	89.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	89.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	89.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	89.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	88.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	88.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	88.68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	88.24
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	88.08
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	87.82
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	87.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	87.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	87.31
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	87.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	87.2
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	87.14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	87.04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	86.87
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	86.7
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	86.48
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	86.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	86.39
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	86.33
3u4t_A	272	TPR repeat-containing protein; structural genomics	86.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	85.93
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	85.89
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	85.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	85.22
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	85.17
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	84.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	84.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	84.07
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	83.7
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	83.59
4g1t_A	472	Interferon-induced protein with tetratricopeptide	83.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	83.32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	83.28
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	83.27
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	83.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	83.11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	83.03
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	82.72
2gw1_A	514	Mitochondrial precursor proteins import receptor;	82.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	82.51
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	81.98
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	81.8
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	81.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	81.25
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	80.39
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	80.18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	80.12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	80.12

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.90  E-value=2.5e-24  Score=167.05  Aligned_cols=110  Identities=25%  Similarity=0.377  Sum_probs=88.6

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch-------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh--
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA-------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL--  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~-------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~--  134 (193)
                      ...|||+|||| +++++.++||++||+|++++|||+++...       +.+.|+.|++||++|+||.+|+.||..+..  
T Consensus         8 ~~~~~y~iLgv-~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~   86 (155)
T 2l6l_A            8 PKKDWYSILGA-DPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD   86 (155)
T ss_dssp             CCSHHHHHHTC-CTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred             CCCChhHhcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence            45899999999 99999999999999999999999987542       578999999999999999999999987643  


Q ss_pred             ---------------------cccccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEec
Q 048108          135 ---------------------NKVKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVIL  190 (193)
Q Consensus       135 ---------------------~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~~  190 (193)
                                           ...||+.|+ |+..+.      +.+...+..         ..+.|++|+.-=.|+.
T Consensus        87 ~~~~~~~~~~~~~~~m~~~e~~~~f~~~Cr-CG~~f~------i~~~~l~~~---------~~v~C~sCSl~~~v~~  147 (155)
T 2l6l_A           87 LRNVGPVDAQVYLEEMSWNEGDHSFYLSCR-CGGKYS------VSKDEAEEV---------SLISCDTCSLIIELLH  147 (155)
T ss_dssp             HHTTCSSSEEEETTTSEEETTTTEEEEECS-SSCEEE------EETTHHHHC---------CEEECSSSSCEEEEEC
T ss_pred             ccccccccceeeHHHhccccCCcEEEEcCC-CCCeEE------ecHHHhCCC---------CEEECCCCceEEEEEE
Confidence                                 346889996 997776      444433210         4577888877666654

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.86  E-value=4e-22  Score=137.33  Aligned_cols=68  Identities=35%  Similarity=0.526  Sum_probs=65.4

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++++.++||++|+++++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus         3 ~~~y~iLgv-~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   70 (77)
T 1hdj_A            3 KDYYQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCSHHHHTC-CTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence            689999999 99999999999999999999999999888999999999999999999999999998864

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=3.4e-22  Score=138.01  Aligned_cols=71  Identities=35%  Similarity=0.535  Sum_probs=66.9

Q ss_pred             ccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           63 ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        63 ~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ....|||+|||| +++++.++||++|+++++++|||+++.+++.+.|+.|++||++|+||.+|..||..+..
T Consensus         4 ~~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A            4 GSSGDYYEILGV-SRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             SCSCCHHHHHTC-CTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             CCCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            345899999999 99999999999999999999999999889999999999999999999999999998764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=8.8e-22  Score=139.10  Aligned_cols=70  Identities=34%  Similarity=0.538  Sum_probs=66.7

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ...|||+|||| +++++.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus         5 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (88)
T 2ctr_A            5 SSGSYYDILGV-PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS   74 (88)
T ss_dssp             CCCSHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred             CCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            45899999999 99999999999999999999999999888999999999999999999999999998864

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=135.68  Aligned_cols=71  Identities=30%  Similarity=0.404  Sum_probs=65.7

Q ss_pred             ccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           63 ETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        63 ~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ....|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus         4 ~~~~~~y~iLgv-~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            4 GSSGDYYQILGV-PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SCCSCHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            345899999999 99999999999999999999999998 477899999999999999999999999998753

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=1.3e-21  Score=138.27  Aligned_cols=69  Identities=30%  Similarity=0.439  Sum_probs=66.0

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++++.++||++||++++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        16 ~~d~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           16 DFDPYRVLGV-SRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSCHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             CCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            4899999999 99999999999999999999999999889999999999999999999999999998864

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=2.8e-21  Score=134.56  Aligned_cols=69  Identities=35%  Similarity=0.524  Sum_probs=64.1

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ...|||+|||| +++++.++||++||++++++|||+++..  .+.+.|+.|++||++|+||.+|..||..+.
T Consensus         7 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            7 GMVDYYEVLDV-PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             SSCCHHHHTTC-CTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCcCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            34899999999 9999999999999999999999999753  678899999999999999999999999875

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.84  E-value=2.3e-21  Score=138.24  Aligned_cols=69  Identities=30%  Similarity=0.491  Sum_probs=64.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++++.++||++||+|++++|||+++.       +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        15 ~~~~y~iLgv-~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           15 KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             CSCHHHHTTC-CTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCChHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            4899999999 999999999999999999999999873       56789999999999999999999999998864

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.84  E-value=4.1e-21  Score=131.01  Aligned_cols=66  Identities=36%  Similarity=0.620  Sum_probs=61.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ..|||+|||| +++++.++||++|+++++++|||+++.  +.+.|+.|++||++|+||.+|..||..+.
T Consensus         7 ~~~~y~iLgl-~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            7 ETGYYDVLGV-KPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCHHHHHTC-CTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            4799999999 999999999999999999999999974  36899999999999999999999999874

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=4.2e-21  Score=138.49  Aligned_cols=70  Identities=27%  Similarity=0.474  Sum_probs=65.4

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ...|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        15 ~~~~~Y~vLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           15 SRTALYDLLGV-PSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CSSHHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CccCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            45899999999 99999999999999999999999996 577899999999999999999999999997754

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5.4e-21  Score=140.87  Aligned_cols=70  Identities=29%  Similarity=0.435  Sum_probs=66.3

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ...|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        18 ~~~d~Y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           18 DTEDYYTLLGC-DELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCCCHHHHTTC-CTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            45899999999 99999999999999999999999998 578999999999999999999999999999875

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=9.9e-21  Score=134.64  Aligned_cols=70  Identities=34%  Similarity=0.520  Sum_probs=64.7

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ...|||+|||| +++++.++||++||+|++++|||+++.  +.+++.|+.|++||++|+||.+|..||..+..
T Consensus         7 ~~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   78 (92)
T 2dmx_A            7 GMANYYEVLGV-QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCD   78 (92)
T ss_dssp             CCCCHHHHHTC-CTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred             CCcCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            34899999999 999999999999999999999999975  36789999999999999999999999998753

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=135.74  Aligned_cols=68  Identities=35%  Similarity=0.517  Sum_probs=63.6

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--hHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--AADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++++.++||++||++++++|||+++..  .+.+.|+.|++||++|+||.+|..||..+..
T Consensus         2 ~d~Y~iLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~   71 (99)
T 2lgw_A            2 ASYYEILDV-PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE   71 (99)
T ss_dssp             CCHHHHSSS-CTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            589999999 9999999999999999999999999753  4789999999999999999999999998864

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=2.3e-20  Score=136.89  Aligned_cols=70  Identities=39%  Similarity=0.605  Sum_probs=65.3

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ...|||+|||| +++++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        15 ~~~~~Y~vLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           15 SGESLYHVLGL-DKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             CSCCHHHHHTC-CTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            34899999999 99999999999999999999999997 467889999999999999999999999988764

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.81  E-value=8.3e-21  Score=137.81  Aligned_cols=68  Identities=35%  Similarity=0.582  Sum_probs=64.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++++.++||++||+|++++|||+++ .+.+++.|+.|++||++|+||.+|..||..+..
T Consensus         3 ~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (103)
T 1bq0_A            3 QDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (103)
T ss_dssp             CCSTTTTSS-CSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred             CCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence            699999999 99999999999999999999999998 477899999999999999999999999998875

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.81  E-value=1.4e-20  Score=137.94  Aligned_cols=71  Identities=21%  Similarity=0.418  Sum_probs=65.8

Q ss_pred             ccchhhhhcCCCCCC-CHHHHHHHHHHHHHhcCCCCCCC----chHHHHHHHHHHHHHHcCCCchhhhhhhhhhhcc
Q 048108           65 KSTLYKILAITDPQV-DISVIKKQFKKMALMLHPDKNSS----VAADGAFKLIRSANNVLTDPGKRKAFDNRIRLNK  136 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a-~~~~Ik~aYr~l~~~~HPDk~~~----~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~  136 (193)
                      ..|||+|||| ++++ +.++||++||++++++|||+++.    +.+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus        14 ~~~~y~iLgv-~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~   89 (109)
T 2qsa_A           14 LENCYDVLEV-NREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPD   89 (109)
T ss_dssp             TSCHHHHTTC-CGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHcCC-CCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCch
Confidence            4899999999 9999 99999999999999999999986    5678999999999999999999999999987533

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.9e-20  Score=132.34  Aligned_cols=67  Identities=34%  Similarity=0.569  Sum_probs=62.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++++.++||++||+|++++|||+++.  ..+.|+.|++||++|+||.+|..||..+..
T Consensus         7 ~~~~y~iLgv-~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   73 (92)
T 2o37_A            7 ETKLYDLLGV-SPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLE   73 (92)
T ss_dssp             CCHHHHHHTC-CTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred             CCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence            4799999999 999999999999999999999999864  357999999999999999999999998865

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=6.4e-20  Score=130.15  Aligned_cols=62  Identities=26%  Similarity=0.471  Sum_probs=59.2

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKA  127 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~  127 (193)
                      ..|||+|||| +++++.++||++||+|++++|||+++.+++.++|+.|++||++|+||.+|..
T Consensus        26 ~~~~y~iLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGV-KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTC-CTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            4899999999 9999999999999999999999999988999999999999999999998864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.75  E-value=7.2e-19  Score=140.88  Aligned_cols=68  Identities=37%  Similarity=0.555  Sum_probs=64.5

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| +++|+.++||++||+|++++|||+++ .+.+.++|+.|++||++|+||.+|+.||..+..
T Consensus         2 ~~~y~~l~~-~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~   70 (210)
T 3apq_A            2 QNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   70 (210)
T ss_dssp             CCHHHHHTC-CTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred             CCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence            589999999 99999999999999999999999996 578899999999999999999999999998865

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.73  E-value=4.6e-18  Score=145.76  Aligned_cols=122  Identities=30%  Similarity=0.393  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQF   88 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aY   88 (193)
                      +++.+..+..+|..++..|+++.|+..++++..++|+...+...+..+..........++|.+||+ .+.++.++|+++|
T Consensus       325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~-~~~~~~~~~~~~y  403 (450)
T 2y4t_A          325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV-KRNAKKQEIIKAY  403 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS-STTCCTTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC-CccCCHHHHHHHH
Confidence            455567788889999999999999999999999999998888888888877777778899999999 9999999999999


Q ss_pred             HHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCCCchhhhhhhh
Q 048108           89 KKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTDPGKRKAFDNR  131 (193)
Q Consensus        89 r~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~~R~~YD~~  131 (193)
                      +++++++|||+.+.+.    +++.|+.|++||++|+||++|..||++
T Consensus       404 ~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             HHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             HHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            9999999999998654    788999999999999999999999974

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.73  E-value=2.9e-19  Score=132.05  Aligned_cols=65  Identities=17%  Similarity=0.202  Sum_probs=60.1

Q ss_pred             ccchhhhhcCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDI--SVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~--~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ..|||+|||| +++++.  ++||++||+|++++|||+++.   .++|+.|++||+||+||.+|+.||.++.
T Consensus         7 ~~~~Y~iLgv-~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTC-CTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCC-CCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            3799999999 999999  999999999999999999875   4799999999999999999999997653

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.72  E-value=2.4e-19  Score=141.33  Aligned_cols=68  Identities=19%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             cccccchhhhhcCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           62 SETKSTLYKILAITDPQVD--ISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        62 ~~~~~d~Y~vLgv~~~~a~--~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .+...|||+|||| +++|+  .++||+|||++++++|||++++   +++|+.|++||++|+||.+|+.||+.+.
T Consensus         7 ~~~~~d~Y~vLGl-~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            7 REESLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHHHTTTC-CGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccccHHHHcCC-CCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3445799999999 99998  5999999999999999999875   3799999999999999999999999885

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=6e-19  Score=128.79  Aligned_cols=80  Identities=21%  Similarity=0.375  Sum_probs=66.9

Q ss_pred             HHhCCCCc-cHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--------hHHHHHH
Q 048108           40 KEFNPDLP-NIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV--------AADGAFK  110 (193)
Q Consensus        40 ~~l~p~~~-~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~--------~a~~~f~  110 (193)
                      ..+.+..+ .|+++|..+...+...  .|||+|||+ +. |+.++||++||++++++||||++.+        .++++|+
T Consensus        16 ~~W~~~~~~~ir~lL~~l~~~l~~~--~d~Y~vl~~-~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~   91 (106)
T 3ag7_A           16 RKWSSGKSGNIRSLLSTLQYILWSG--SGWKPVPLM-DM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFE   91 (106)
T ss_dssp             HHHHTTTTTCHHHHHTTGGGTSCTT--SCCCCCCGG-GS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHhccc--CCHHHHcCC-CC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHH
Confidence            33444433 5999999988776655  799999999 86 9999999999999999999997642        3588999


Q ss_pred             HHHHHHHHcCCCc
Q 048108          111 LIRSANNVLTDPG  123 (193)
Q Consensus       111 ~i~~Ay~vLsd~~  123 (193)
                      .|++||++|+|+.
T Consensus        92 ~I~~AYevLsd~~  104 (106)
T 3ag7_A           92 LLQEAWDHFNTLG  104 (106)
T ss_dssp             HHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCcc
Confidence            9999999999986

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.72  E-value=1.2e-18  Score=123.92  Aligned_cols=73  Identities=21%  Similarity=0.251  Sum_probs=64.8

Q ss_pred             CccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHHHHHHHcCC
Q 048108           46 LPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSV----AADGAFKLIRSANNVLTD  121 (193)
Q Consensus        46 ~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~----~a~~~f~~i~~Ay~vLsd  121 (193)
                      ...|+.+|..++..+...  .++|++||| ++.++.++||+|||++++++|||+++..    .++++|+.|++||++|.+
T Consensus        15 ~~~ir~lL~~l~~~L~~~--~~~y~~Lgv-~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           15 ERNIRALLSTMHTVLWAG--ETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             TTCHHHHHHHGGGTSCTT--CCSCCCCCG-GGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccc--ccCCeecCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            346899999999888764  589999999 9999999999999999999999998753    278899999999999964

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.71  E-value=1.2e-18  Score=138.08  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=70.0

Q ss_pred             CccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCC
Q 048108           46 LPNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTD  121 (193)
Q Consensus        46 ~~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd  121 (193)
                      ...|+.+|..+...+...  .|||+|||| ++.++.++||++||++++++|||+++...    +++.|+.|++||++|+|
T Consensus        99 ~~niRaLLssl~~vl~~~--~d~Y~vLgv-~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD  175 (182)
T 1n4c_A           99 ERNIRALLSTMHTVLWAG--ETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN  175 (182)
T ss_dssp             TTCHHHHHHHGGGGSCTT--CCCCCCCCG-GGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCc--cchhhcCCC-CCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence            345888888877555443  699999999 99999999999999999999999987543    78899999999999999


Q ss_pred             Cchhhhh
Q 048108          122 PGKRKAF  128 (193)
Q Consensus       122 ~~~R~~Y  128 (193)
                      |.+|..|
T Consensus       176 ~~kR~~Y  182 (182)
T 1n4c_A          176 QGQKPLY  182 (182)
T ss_dssp             HHSSCCC
T ss_pred             HHhhhhC
Confidence            9999887

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.71  E-value=5.1e-19  Score=152.36  Aligned_cols=68  Identities=29%  Similarity=0.510  Sum_probs=0.0

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ..|||+|||| +++|+.++||+|||+|+++||||+++.+.++++|++|++||++|+||.+|+.||+++.
T Consensus        27 ~~d~Y~vLgv-~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           27 LKDYYAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccCHHHHcCc-CCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            4799999999 9999999999999999999999999888899999999999999999999999999854

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.71  E-value=5.6e-18  Score=133.43  Aligned_cols=68  Identities=19%  Similarity=0.254  Sum_probs=61.5

Q ss_pred             cchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| ++++  +..+||++||+|++++|||+++...      +.+.|..|++||++|+||.+|..||..+..
T Consensus         1 ~d~y~lLgl-~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g   76 (171)
T 1fpo_A            1 MDYFTLFGL-PARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (171)
T ss_dssp             CHHHHHTTC-CSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CCHHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence            489999999 9888  9999999999999999999987532      457899999999999999999999998763

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.71  E-value=2.6e-18  Score=119.04  Aligned_cols=63  Identities=22%  Similarity=0.364  Sum_probs=56.8

Q ss_pred             ccccchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhh
Q 048108           63 ETKSTLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFD  129 (193)
Q Consensus        63 ~~~~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD  129 (193)
                      +...++|+|||| +++  ++.++||++||+|++++|||++++   .++|+.|++||++|+|+.+|..++
T Consensus         8 ~~~~~~y~iLgl-~~~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A            8 ADKERLLELLKL-PRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHHTC-CSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHHh
Confidence            344789999999 999  999999999999999999999853   589999999999999999998844

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=4.4e-18  Score=120.24  Aligned_cols=60  Identities=23%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRK  126 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~  126 (193)
                      .++|+|||| +++++.++||++||+|+++||||+++.  +.++++|+.|++||++|+|...|.
T Consensus        16 ~~~y~vLgv-~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           16 KEVTSVVEQ-AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             HHHHHHHHH-TTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHhCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            789999999 999999999999999999999999986  347899999999999999977663

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=134.50  Aligned_cols=69  Identities=16%  Similarity=0.349  Sum_probs=60.9

Q ss_pred             cccchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCch------HHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSVA------ADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      ...|||+|||| +++  ++.++||++||+|++++|||+++...      +.+.|+.|++||+||+||.+|..||..+.
T Consensus        41 ~~~d~y~lLgv-~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           41 PTRDYFSLMDC-NRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             TTCCHHHHTTS-CSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCCHHHHcCC-CCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            45899999999 765  79999999999999999999987532      45679999999999999999999998765

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.65  E-value=2.5e-17  Score=130.83  Aligned_cols=69  Identities=20%  Similarity=0.383  Sum_probs=61.3

Q ss_pred             cccccchhhhh------cCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhh
Q 048108           62 SETKSTLYKIL------AITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRI  132 (193)
Q Consensus        62 ~~~~~d~Y~vL------gv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~  132 (193)
                      .....|||+||      |+++.+++.++||++||+|++++|||+++.  +.+.|..|++||++|+||.+|..||..+
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            34458999999      462348999999999999999999999975  6788999999999999999999999987

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.64  E-value=6e-17  Score=109.89  Aligned_cols=56  Identities=25%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             cchhhhhcCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchh
Q 048108           66 STLYKILAITDP-QVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKR  125 (193)
Q Consensus        66 ~d~Y~vLgv~~~-~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R  125 (193)
                      .++|+|||| ++ +++.++||++||+|++++|||++++   .+.|+.|++||++|+|+..|
T Consensus        14 ~~~y~iLgl-~~~~a~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNL-TENTLTKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTC-CTTTCCHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhc
Confidence            689999999 88 7999999999999999999999743   46999999999999998765

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.55  E-value=3.7e-16  Score=146.65  Aligned_cols=70  Identities=36%  Similarity=0.540  Sum_probs=40.7

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNS-SVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ...|||+|||| +++|+.++||++||+|++++|||+++ .+.+.++|+.|++||++|+||.+|+.||+.+..
T Consensus        19 ~~~~~y~~lg~-~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~   89 (780)
T 3apo_A           19 HDQNFYSLLGV-SKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   89 (780)
T ss_dssp             ----CHHHHTC-CTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred             CCCCHHHHcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence            34899999999 99999999999999999999999985 577889999999999999999999999998864

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.95  E-value=7.5e-10  Score=73.49  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             chhhhhcCCCCC---CCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcC
Q 048108           67 TLYKILAITDPQ---VDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLT  120 (193)
Q Consensus        67 d~Y~vLgv~~~~---a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLs  120 (193)
                      +-|.|||| +++   ++.++|+++||+|...+|||+++++   .....|++|+++|.
T Consensus         5 EA~~ILgv-~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~---yl~~ki~~Ake~l~   57 (65)
T 2guz_B            5 ESCKILNI-EESKGDLNMDKINNRFNYLFEVNDKEKGGSF---YLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHTTC-CGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH---HHHHHHHHHHHHHH
T ss_pred             HHHHHhCC-CCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHH
Confidence            45899999 888   9999999999999999999998654   66778999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.85  E-value=8.9e-06  Score=75.12  Aligned_cols=105  Identities=15%  Similarity=0.075  Sum_probs=76.3

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH-------------------HHHHHHHHH-------
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID-------------------DYFTACRVH-------   59 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~-------------------~~l~~~~~~-------   59 (193)
                      .+.|++.+..+..+|..++..|++++|+..+++|.+++|....+.                   ++-.+.+.+       
T Consensus       527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~  606 (681)
T 2pzi_A          527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTE  606 (681)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTS
T ss_pred             HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCc
Confidence            344566778899999999999999999999999999999843211                   111111110       


Q ss_pred             ----------------hhcccccchhhhhcCCCCCCCH--HHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 048108           60 ----------------QLSETKSTLYKILAITDPQVDI--SVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNV  118 (193)
Q Consensus        60 ----------------~~~~~~~d~Y~vLgv~~~~a~~--~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~v  118 (193)
                                      ...+.++|||.+||+ +.+...  .+|+++||++++..+++       .+++..|..|+.|
T Consensus       607 ~~~~~l~~~ll~~~l~~~~~~~~~~~~~lG~-~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          607 PRVLQIRALVLGGALDWLKDNKASTNHILGF-PFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSCCCSSSEETTE-ESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCcccCCC-CCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence                            012345789999999 665544  67999999999966544       5788899988876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.30  E-value=0.0055  Score=43.79  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ..|++.|+.+.+++..+++.|+|++|+..+.+|..++|....+-
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   50 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY   50 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            46899999999999999999999999999999999999986433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.75  E-value=0.004  Score=45.71  Aligned_cols=51  Identities=14%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      .+.+++.+...+.+|..++..|+++.|+..+.++.+++|+...+-..+..+
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   74 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL   74 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456788889999999999999999999999999999999986554444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.62  E-value=0.017  Score=41.12  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+.|..+.+++..+++.|+|+.|+..+.+|..++|+...
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~   43 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT   43 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            578899999999999999999999999999999998753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.0096  Score=41.47  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +.|+.+..+|..++..|++++|+..+.++..++|....+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~   40 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG   40 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence            468899999999999999999999999999999987543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.43  E-value=0.066  Score=39.74  Aligned_cols=49  Identities=6%  Similarity=-0.013  Sum_probs=43.4

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ++-..+.+++.++.+..+|..++..|++++|+..+.++..++|....+-
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~   73 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI   73 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3455778899999999999999999999999999999999999986433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.30  E-value=0.003  Score=45.24  Aligned_cols=82  Identities=13%  Similarity=0.078  Sum_probs=55.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCCCCHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQVDISV   83 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~a~~~~   83 (193)
                      ++.++..+..+..+|..++..|+++.|+..+.++..++|+...+--.+..+-..+..  +....|-++|.+ .|+-  .+
T Consensus        40 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-~P~~--~~  116 (126)
T 4gco_A           40 VKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV-DPSN--EE  116 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC--HH
T ss_pred             HHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CcCC--HH
Confidence            445677788999999999999999999999999999999986443333333322211  122667778888 6643  34


Q ss_pred             HHHHHHH
Q 048108           84 IKKQFKK   90 (193)
Q Consensus        84 Ik~aYr~   90 (193)
                      ++....+
T Consensus       117 a~~~l~~  123 (126)
T 4gco_A          117 AREGVRN  123 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.044  Score=36.48  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .++.+..+|..++..|++++|+..+.++..++|....
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~   39 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV   39 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence            5788999999999999999999999999999998753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.99  E-value=0.0048  Score=45.24  Aligned_cols=69  Identities=12%  Similarity=0.063  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQ   78 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~   78 (193)
                      ++..+..+.++|..++..|+++.|+.++.++..++|....+--.+..+-..+..  ....+|-++|.+ .|+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p~  129 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-HPA  129 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CGG
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-CCC
Confidence            456678889999999999999999999999999999875433323322222111  112567778888 665

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.82  E-value=0.0092  Score=43.74  Aligned_cols=42  Identities=14%  Similarity=0.144  Sum_probs=36.7

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+...+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~   47 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY   47 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH
Confidence            456788999999999999999999999999999999987543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.79  E-value=0.012  Score=41.91  Aligned_cols=45  Identities=13%  Similarity=0.054  Sum_probs=38.8

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ++.+++.+..+.++|..++..|++++|+.++.++..++|......
T Consensus        35 l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A           35 IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            455677788899999999999999999999999999999765433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.66  E-value=0.011  Score=44.15  Aligned_cols=44  Identities=9%  Similarity=-0.124  Sum_probs=38.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +.+++.+..+..+|..++..|++++|+..+.+|..++|..+.+-
T Consensus        64 ~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~  107 (151)
T 3gyz_A           64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV  107 (151)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence            44667788899999999999999999999999999999986443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=95.47  E-value=0.0067  Score=46.51  Aligned_cols=53  Identities=11%  Similarity=-0.145  Sum_probs=44.6

Q ss_pred             cCCHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 048108            7 NLVKLAAEKA----RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH   59 (193)
Q Consensus         7 e~~~~ea~~~----~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~   59 (193)
                      |.+++.+..+    .++|..+...|++++|+..|.+|..++|.+.+|..-+..+...
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4578888889    9999999999999999999999999999987765555555433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.44  E-value=0.058  Score=38.52  Aligned_cols=49  Identities=16%  Similarity=0.043  Sum_probs=42.0

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ++...+.+++.+..+..+|..++..|++++|+..+.++..++|....+-
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   55 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF   55 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH
Confidence            3445677899999999999999999999999999999999999876433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.43  E-value=0.026  Score=38.27  Aligned_cols=41  Identities=20%  Similarity=0.126  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +++.+..+..+|..++..|+++.|+..+.++.+++|....+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a   43 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT   43 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            46677889999999999999999999999999999998643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.35  E-value=0.011  Score=43.38  Aligned_cols=85  Identities=12%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCC-CCHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQ-VDISV   83 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~-a~~~~   83 (193)
                      +.++..+..+..+|..++..|++++|+..+.++..++|+...+--.+..+-..+..  +....|-++|.+ .++ ....+
T Consensus        49 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~  127 (148)
T 2vgx_A           49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL-IANXPEFXE  127 (148)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTCGGGHH
T ss_pred             HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCCcchH
Confidence            34566788889999999999999999999999999999886544333333222211  111455566776 443 33345


Q ss_pred             HHHHHHHHH
Q 048108           84 IKKQFKKMA   92 (193)
Q Consensus        84 Ik~aYr~l~   92 (193)
                      ++.....+.
T Consensus       128 ~~~~~~~~l  136 (148)
T 2vgx_A          128 LSTRVSSML  136 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            554444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.34  E-value=0.0077  Score=41.44  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=37.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +.+++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus        13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   55 (115)
T 2kat_A           13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA   55 (115)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH
Confidence            4456667889999999999999999999999999999987543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.31  E-value=0.28  Score=35.49  Aligned_cols=48  Identities=13%  Similarity=0.009  Sum_probs=42.2

Q ss_pred             cccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            3 RMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         3 ~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +...+.+++.+..+..+|..++..|++++|+..+.++..++|....+-
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   58 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF   58 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHH
Confidence            344677899999999999999999999999999999999999876443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.19  E-value=0.25  Score=36.96  Aligned_cols=46  Identities=22%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |.|+.+.....+..+..+|..++..|+++.|+..+.++..+.|..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~   72 (198)
T 2fbn_A           27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE   72 (198)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence            6677776677899999999999999999999999999999998765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.12  E-value=0.058  Score=39.21  Aligned_cols=55  Identities=11%  Similarity=0.017  Sum_probs=46.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhh
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP-NIDDYFTACRVHQL   61 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~-~i~~~l~~~~~~~~   61 (193)
                      +.++..+..+..+|..++..|+++.|+.++.++..++|+.. .+...+..+...+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            34566678889999999999999999999999999999987 67777777765544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.09  E-value=0.018  Score=38.22  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=21.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           17 RDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        17 ~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +.+|..++..|++++|+..+.++..++|...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   34 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGK   34 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            4566666777777777777777777776664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.012  Score=40.87  Aligned_cols=84  Identities=17%  Similarity=0.070  Sum_probs=53.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC----CC
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ----VD   80 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~----a~   80 (193)
                      +.+++.+..+..+|..++..|++++|+..+.++..++|....+--.+..+-..+..-  ....|-++|.+ .|+    ..
T Consensus        32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~p~  110 (126)
T 3upv_A           32 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK-DAEVNNGSS  110 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHTTTT
T ss_pred             HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh-CcccCCchh
Confidence            345667888999999999999999999999999999999854433333332222111  11445556666 411    34


Q ss_pred             HHHHHHHHHHH
Q 048108           81 ISVIKKQFKKM   91 (193)
Q Consensus        81 ~~~Ik~aYr~l   91 (193)
                      ..++.....++
T Consensus       111 ~~~~~~~l~~~  121 (126)
T 3upv_A          111 AREIDQLYYKA  121 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44555544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.06  E-value=0.011  Score=42.42  Aligned_cols=50  Identities=12%  Similarity=0.028  Sum_probs=40.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      ..+++.+..+..+|..++..|+++.|+..+.++..++|....+.-.+..+
T Consensus        46 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           46 MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            34566788899999999999999999999999999999986544434333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.02  E-value=0.1  Score=37.87  Aligned_cols=42  Identities=12%  Similarity=0.120  Sum_probs=36.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +.+++.+..+..+|..++..|++++|+..+.++..++|....
T Consensus        39 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A           39 SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            344556778899999999999999999999999999999753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.01  E-value=0.027  Score=36.24  Aligned_cols=40  Identities=25%  Similarity=0.296  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ..+..+..+|..++..|+++.|+..+.++..++|....+-
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   46 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW   46 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            4678888999999999999999999999999999875433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=94.91  E-value=0.07  Score=36.74  Aligned_cols=44  Identities=16%  Similarity=0.044  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDY   52 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~   52 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|+...+--.
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   66 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF   66 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            57889999999999999999999999999999999998644333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=94.82  E-value=0.048  Score=40.13  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +.+..+.++|..++..|++++|+..++++.+++|+...+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~   41 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET   41 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            456778899999999999999999999999999987543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.73  E-value=0.17  Score=33.18  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             CHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            9 VKLAAE-KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         9 ~~~ea~-~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +++.+. .+..+|..++..|++++|+..+.++..++|....+.
T Consensus        30 ~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           30 EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            445566 888999999999999999999999999999986543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=94.55  E-value=0.057  Score=37.95  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      ..++.+|..++..|++++|+..+.++..++|....+-
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~   54 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW   54 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence            3466777777777888888888888888777764433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.39  E-value=0.13  Score=34.55  Aligned_cols=45  Identities=22%  Similarity=0.266  Sum_probs=38.1

Q ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            4 MLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         4 ~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +..+.++..+..+..+|..++..|+++.|+..+.++..++|....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   47 (131)
T 2vyi_A            3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV   47 (131)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Confidence            445667888999999999999999999999999999999998743

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.38  E-value=0.17  Score=38.41  Aligned_cols=53  Identities=9%  Similarity=0.064  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE   63 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~   63 (193)
                      ...+.+..+|..+++.|||+.|++++.++.+++|....+..+...++..+..+
T Consensus        69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            45788899999999999999999999999999999988888888887665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=94.35  E-value=0.039  Score=36.75  Aligned_cols=40  Identities=13%  Similarity=0.073  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+++.+..+..+|..++..|++++|+..+.++..++|+..
T Consensus        33 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   72 (111)
T 2l6j_A           33 AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE   72 (111)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence            3455677788999999999999999999999999999873

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.28  E-value=0.062  Score=41.16  Aligned_cols=43  Identities=23%  Similarity=0.009  Sum_probs=35.4

Q ss_pred             cCCHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            7 NLVKLAAEKARD----------------AAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         7 e~~~~ea~~~~~----------------~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +.+++.+..+..                +|..++..|++++|+..+.++..++|....+
T Consensus        32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   90 (208)
T 3urz_A           32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC   90 (208)
T ss_dssp             HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            345666666666                9999999999999999999999999987543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=94.23  E-value=0.042  Score=36.48  Aligned_cols=46  Identities=11%  Similarity=-0.029  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      ++..+..+..+|..++..|+++.|+..+.++..++|....+-..+.
T Consensus        34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A           34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3445678889999999999999999999999999998754433333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.17  E-value=0.031  Score=39.07  Aligned_cols=77  Identities=16%  Similarity=0.100  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCCCCHHHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQVDISVIKKQFK   89 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~a~~~~Ik~aYr   89 (193)
                      .+..+..+|..++..|+++.|+..+.++..++|....+--.+..+-.....  .....+-++|.+ .+.  ..++...+.
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~--~~~~~~~l~  140 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL-EPK--NKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CSS--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--cHHHHHHHH
Confidence            378899999999999999999999999999999875433333322221111  111445566666 543  334455444


Q ss_pred             HH
Q 048108           90 KM   91 (193)
Q Consensus        90 ~l   91 (193)
                      ++
T Consensus       141 ~~  142 (148)
T 2dba_A          141 NI  142 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.15  E-value=0.1  Score=35.71  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC-CCHH
Q 048108            9 VKLAAEKARDAAEEYFKLQN---IDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ-VDIS   82 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d---~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~-a~~~   82 (193)
                      +++.++.+...|+.++..++   .+.|...+.+|..++|......-++.........-  .-.-|-.+|.. .+. ....
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-~p~~~~~~   80 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-NDPNLDRV   80 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC-CCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence            34557777788888766655   68888888888888888765544444333221111  11445666777 444 3344


Q ss_pred             HHHHHHHH
Q 048108           83 VIKKQFKK   90 (193)
Q Consensus        83 ~Ik~aYr~   90 (193)
                      .|..+..+
T Consensus        81 ~i~~~I~~   88 (93)
T 3bee_A           81 TIIESINK   88 (93)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45544433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=94.09  E-value=0.032  Score=38.86  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      ...+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~   45 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY   45 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHH
Confidence            3457788888999999999999999999999999886543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=94.06  E-value=0.036  Score=44.31  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      ..+..+|..++..|+++.|+..+.++..++|+...+
T Consensus       273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  308 (359)
T 3ieg_A          273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA  308 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence            445667888888888888888888888888876533

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.03  E-value=0.011  Score=49.43  Aligned_cols=33  Identities=21%  Similarity=0.103  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+.++|..++..|+++.|+..+.++..++|...
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  264 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP  264 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            567778888888888888888888888888654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=93.91  E-value=0.061  Score=36.92  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+..+|..++..|+++.|+..+.++..++|+.+.
T Consensus        38 ~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~   74 (129)
T 2xev_A           38 TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc
Confidence            3477888999999999999999999999999998743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=93.84  E-value=0.048  Score=39.74  Aligned_cols=44  Identities=20%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+.+++.+..+..+|..++..|+++.|+..+.++.+++|+...+
T Consensus        58 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  101 (150)
T 4ga2_A           58 INVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDL  101 (150)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHH
Confidence            34566778889999999999999999999999999999998543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=93.82  E-value=0.55  Score=35.69  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      ..+|..++.++..++..|+|++|+..|.+|.+++|+.
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~   44 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM   44 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence            4678999999999999999999999999999999983

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=93.76  E-value=0.18  Score=43.90  Aligned_cols=46  Identities=15%  Similarity=0.072  Sum_probs=39.8

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |.+..+.+.+.+..+..+|..++..|+|+.|+..|.+|..++|...
T Consensus       257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~  302 (457)
T 1kt0_A          257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY  302 (457)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence            4455566678899999999999999999999999999999999873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=93.75  E-value=0.076  Score=36.56  Aligned_cols=50  Identities=14%  Similarity=0.014  Sum_probs=41.2

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV   58 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~   58 (193)
                      +++.+..+..+|..++..|++++|+..+.++..+.|..+.+......+..
T Consensus        57 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           57 FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44556777888999999999999999999999999999877666555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.73  E-value=0.14  Score=37.35  Aligned_cols=39  Identities=13%  Similarity=0.069  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCccHH
Q 048108           12 AAEKARDAAEE-YFKLQNI--DMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus        12 ea~~~~~~A~~-~~~~~d~--~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      .+..+..+|.. ++..|++  +.|+..+.++..++|....+-
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  118 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL  118 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence            35566677777 6677777  777777777777777765433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.68  E-value=0.26  Score=31.29  Aligned_cols=46  Identities=22%  Similarity=0.266  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      +++.+..+..+|..++..|++++|+..+.++..++|....+...+.
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3445667788999999999999999999999999998865444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=93.62  E-value=0.094  Score=39.38  Aligned_cols=36  Identities=14%  Similarity=0.051  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +..+..+|..++..|+++.|+.++.++..++|....
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  123 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK  123 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH
Confidence            467788888899999999999999999999887653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=93.56  E-value=0.076  Score=45.15  Aligned_cols=70  Identities=16%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc--ccccchhhhhcCCCCC
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS--ETKSTLYKILAITDPQ   78 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~--~~~~d~Y~vLgv~~~~   78 (193)
                      .++..+..+.++|..++..|++++|+.++.+|..++|....+--.+..+-..+..  +....|-+.|.+ .|.
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~  339 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APE  339 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC
Confidence            4567788899999999999999999999999999999875433333333222111  112455566777 554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.36  E-value=0.18  Score=40.98  Aligned_cols=37  Identities=14%  Similarity=0.029  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+..+|..++..|++++|...++++..++|....
T Consensus       199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3445566777888888888888888888888888754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.33  E-value=0.3  Score=33.41  Aligned_cols=47  Identities=11%  Similarity=0.123  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV   58 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~   58 (193)
                      .+..+..+|.++++.|+++.|+..+++|..+.|+.+.+..-+..++.
T Consensus        45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~   91 (104)
T 2v5f_A           45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence            45666788899999999999999999999999998765444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=93.21  E-value=0.039  Score=38.35  Aligned_cols=49  Identities=18%  Similarity=0.143  Sum_probs=39.2

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      ++.+++.+..+..+|..++..|+++.|+..+.++..++|....+--.+.
T Consensus        36 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B           36 ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3345566788999999999999999999999999999998754433333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=93.15  E-value=0.11  Score=34.92  Aligned_cols=47  Identities=13%  Similarity=0.058  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ   60 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~   60 (193)
                      +..+..+|..++..|+++.|+..+.++..+.|+. .+...+..+...+
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~  125 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Confidence            6778899999999999999999999999999964 4555555554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=93.14  E-value=0.076  Score=34.87  Aligned_cols=31  Identities=13%  Similarity=0.125  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +..+|..++..|+++.|+..+.++..++|..
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   39 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE   39 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence            3444555555555555555555555555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=93.09  E-value=0.75  Score=38.01  Aligned_cols=46  Identities=15%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |.+..+.+++.+..+..+|..++..|+++.|+..+.+|..++|...
T Consensus       136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~  181 (336)
T 1p5q_A          136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES  181 (336)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc
Confidence            3444555678899999999999999999999999999999999873

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=93.08  E-value=0.15  Score=38.13  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +..+..+|..++..|+++.|+..+.++..++|...
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   71 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA   71 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            45677788888888888888888888888887754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=92.96  E-value=0.083  Score=35.95  Aligned_cols=45  Identities=18%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDD   51 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~   51 (193)
                      +.+++.+..+..+|..++..|++++|+..+.++..++|....+--
T Consensus        44 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A           44 KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            344556788889999999999999999999999999998754433

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.91  E-value=0.049  Score=38.36  Aligned_cols=17  Identities=29%  Similarity=0.630  Sum_probs=10.0

Q ss_pred             ccCccCCCcceEecccC
Q 048108          177 IFCQCQGRRKIVILRNC  193 (193)
Q Consensus       177 ~~C~~C~~~~~v~~~~c  193 (193)
                      ..|+.|+|+|.+|.++|
T Consensus        68 ~~C~~C~G~G~~i~~~C   84 (104)
T 2ctt_A           68 STCRRCGGRGSIIISPC   84 (104)
T ss_dssp             EECSSSSSSSEECSSCC
T ss_pred             EECCcCCCcceECCCcC
Confidence            45666666666665555

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=92.90  E-value=0.27  Score=32.32  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+..+|..++..|+++.|+..+.++..++|....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   39 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV   39 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence            6788999999999999999999999999999998753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.82  E-value=0.72  Score=42.93  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .++.|+.+.++|..+...|++++|+..+++|.+++|+..
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~   43 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA   43 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            456777888888888888888888888888888888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=92.71  E-value=0.26  Score=32.93  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence            34457788899999999999999999999999999987543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=92.64  E-value=0.41  Score=32.02  Aligned_cols=38  Identities=26%  Similarity=0.404  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   39 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT   39 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence            46788899999999999999999999999999998753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.61  E-value=0.38  Score=35.31  Aligned_cols=52  Identities=10%  Similarity=0.048  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS   62 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~   62 (193)
                      ..-+.+.-+|..+++.|||..|++++....+..|....+..+...++..+..
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            3457788899999999999999999999999999998888888887765543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.57  E-value=0.29  Score=45.63  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=32.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +.+++.+..+.++|..++..|++++|+..+++|.+++|+...
T Consensus        37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~   78 (723)
T 4gyw_A           37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD   78 (723)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            344555677778888888888888888888888888888643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.43  E-value=0.28  Score=33.97  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      .++..+..+..+|..++..|+++.|+..+.++..++|..
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP   61 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence            345678899999999999999999999999999999985

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=92.32  E-value=0.095  Score=40.07  Aligned_cols=45  Identities=9%  Similarity=-0.050  Sum_probs=38.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDD   51 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~   51 (193)
                      +.+++.+..+..+|..++..|++++|+..++++..++|+...+--
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~  126 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI  126 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            345666788899999999999999999999999999999865433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=92.26  E-value=0.14  Score=36.25  Aligned_cols=42  Identities=12%  Similarity=0.008  Sum_probs=35.9

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|....+-
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   84 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   84 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            445577889999999999999999999999999999875433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.19  E-value=2.4  Score=32.20  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ..++.+|..++..|+++.|+..+.++.+++|+.+.
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            44555666666666666666666666666666544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=92.17  E-value=0.12  Score=42.92  Aligned_cols=67  Identities=19%  Similarity=0.171  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCC
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQV   79 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a   79 (193)
                      +..+..+.++|..++..|+++.|+..+.+|..++|....+-  ......+....    ....|-++|.+ .|..
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~  263 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL--SRRGEAHLAVNDFELARADFQKVLQL-YPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHH-CCCC
Confidence            44578889999999999999999999999999999875333  33222222221    12455667777 5543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=92.17  E-value=0.34  Score=32.04  Aligned_cols=39  Identities=26%  Similarity=0.337  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus        40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   78 (125)
T 1na0_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE   78 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence            445677888999999999999999999999999988753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=92.10  E-value=2.8  Score=32.36  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ...+.+|..++..|+++.|+..+.++...+|..+.
T Consensus       149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence            34488899999999999999999999999998754

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=92.04  E-value=0.072  Score=35.37  Aligned_cols=17  Identities=24%  Similarity=0.364  Sum_probs=11.2

Q ss_pred             ccCccCCCcceEecccC
Q 048108          177 IFCQCQGRRKIVILRNC  193 (193)
Q Consensus       177 ~~C~~C~~~~~v~~~~c  193 (193)
                      ..|+.|+|+|.++.++|
T Consensus        51 ~~C~~C~G~G~~~~~~C   67 (79)
T 1exk_A           51 QTCPHCQGRGTLIKDPC   67 (79)
T ss_dssp             EECTTTTTSSEECSSBC
T ss_pred             eECcCCCCccEECCCcC
Confidence            46777777777666655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=91.88  E-value=0.052  Score=36.68  Aligned_cols=41  Identities=17%  Similarity=0.034  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+++.+..+..+|..+...|++++|+..+.++..+.|....
T Consensus        36 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A           36 TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            34455667888999999999999999999999999887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=91.71  E-value=1.7  Score=29.23  Aligned_cols=33  Identities=21%  Similarity=0.105  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+..+|..++..|+++.|+..+.++...+|+..
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~   36 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV   36 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence            467889999999999999999999999999876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=91.68  E-value=0.35  Score=33.70  Aligned_cols=43  Identities=16%  Similarity=0.079  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      .+++.+..+..+|..++..|+++.|+..+.+|..++|+...+.
T Consensus        46 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   88 (121)
T 1hxi_A           46 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH   88 (121)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3456677888899999999999999999999999999986433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=91.67  E-value=0.25  Score=38.11  Aligned_cols=48  Identities=17%  Similarity=-0.024  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVH   59 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~   59 (193)
                      .+..+..+|..+...|+++.|+.++.++..++|+.+.+.+.+..+...
T Consensus       220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence            346777899999999999999999999999999998877777666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=91.66  E-value=0.13  Score=44.74  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCC
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQ   78 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~   78 (193)
                      ...+..+.++|.+++..|+++.|+.++.+|..++|....  .+......+....    ...+|-++|.+ .|+
T Consensus       314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~--a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~  383 (457)
T 1kt0_A          314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK--GLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQ  383 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC
Confidence            345778889999999999999999999999999998743  3333333332221    12566667777 543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=91.57  E-value=0.16  Score=38.73  Aligned_cols=53  Identities=9%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             ccCCHH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            6 KNLVKL--AAEKARDAAEEYFKLQNI---------------------------DMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         6 ~e~~~~--ea~~~~~~A~~~~~~~d~---------------------------~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      .+.+++  .+..+..+|..++..|+.                           +.|+.+++++.+++|+...+..++..+
T Consensus       144 l~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          144 TDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            445666  778888888888888887                           999999999999999998888887766


Q ss_pred             HH
Q 048108           57 RV   58 (193)
Q Consensus        57 ~~   58 (193)
                      ..
T Consensus       224 ~~  225 (228)
T 4i17_A          224 KA  225 (228)
T ss_dssp             HT
T ss_pred             HH
Confidence            53

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=91.57  E-value=0.08  Score=40.39  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=39.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQ-----------NIDMAIKTLKAAKEFNPDLPNIDDYFTACR   57 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~-----------d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~   57 (193)
                      +.|++.+..+..++..+.+.|           ++++|+.++++|..++|+.+.....+..+.
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345566677777888888774           899999999999999999875555555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.48  E-value=0.86  Score=30.86  Aligned_cols=50  Identities=14%  Similarity=-0.026  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACR   57 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~   57 (193)
                      .|++....++-+|..++..|+|+.|+..++++...+|..+....+...+.
T Consensus        38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~   87 (93)
T 3bee_A           38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESIN   87 (93)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHH
T ss_pred             HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            35566777888899999999999999999999999999655554444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=91.47  E-value=0.17  Score=34.27  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      ....+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~   52 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL   52 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            34567889999999999999999999999999999987543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.35  E-value=0.4  Score=35.56  Aligned_cols=52  Identities=13%  Similarity=0.044  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE   63 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~   63 (193)
                      .-+.+.-+|..+.+.|||..|+++.....+..|....+..+...++..++.+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~kd  128 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Confidence            3567788999999999999999999999999999998888888887666544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=91.20  E-value=0.65  Score=32.67  Aligned_cols=39  Identities=33%  Similarity=0.425  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   48 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI   48 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Confidence            467899999999999999999999999999999998643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=91.16  E-value=2.4  Score=33.78  Aligned_cols=37  Identities=16%  Similarity=0.140  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+..+|..++..|++++|+..+.+|..++|....
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~   39 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV   39 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence            4677888899999999999999999999999997643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=90.88  E-value=0.68  Score=39.13  Aligned_cols=55  Identities=18%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ   60 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~   60 (193)
                      .+.+++.+..+..+|..++..|++++|+..+++|.+++|....+...+..+...+
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3455667788889999999999999999999999999998877777666665443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=90.86  E-value=0.21  Score=38.34  Aligned_cols=41  Identities=17%  Similarity=0.017  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+++.+..+..+|..++..|++++|+..+.++..++|+...
T Consensus        34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~   74 (217)
T 2pl2_A           34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG   74 (217)
T ss_dssp             TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            34445566667777777778888888888888877777643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=90.83  E-value=2.4  Score=32.70  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      ++..+..+..+|..++..|+++.|+..+.++...+|..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~   48 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH   48 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            34456666777777777777777777777777777765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=90.81  E-value=0.38  Score=35.05  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+..+...+..+...++++.|...+.++..++|....+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  109 (184)
T 3vtx_A           72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADA  109 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            34455556666666666666666666666666665433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=90.71  E-value=0.094  Score=35.72  Aligned_cols=39  Identities=3%  Similarity=-0.238  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +++.+..+..+|..++..|++++|+..+.++..++|...
T Consensus        49 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           49 DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            445567788899999999999999999999999998654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.56  E-value=0.77  Score=34.44  Aligned_cols=52  Identities=13%  Similarity=0.044  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE   63 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~   63 (193)
                      .-+.+.-+|..+.+.|||..|+++.....+..|....+..+...++..+..+
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kd  127 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE  127 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence            3466778899999999999999999999999999988888888887665544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=90.37  E-value=0.36  Score=36.63  Aligned_cols=36  Identities=19%  Similarity=0.144  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+..+..+|..++..|+++.|+..+.++..++|...
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            344444555555555555555555555555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=90.09  E-value=0.93  Score=34.11  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFN   43 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~   43 (193)
                      +++|+.+..+|..++..|+++.|+..+.++..++
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~   35 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH   35 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999998

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=89.76  E-value=0.54  Score=34.47  Aligned_cols=38  Identities=18%  Similarity=0.040  Sum_probs=28.5

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +++.+..+..+|..++..|++++|+..+.++.+++|..
T Consensus       104 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            34456667777778888888888888888888888765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=89.71  E-value=0.11  Score=38.32  Aligned_cols=34  Identities=9%  Similarity=0.077  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      .+..+..|..++..|++++|+..++++..++|..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~   39 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR   39 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            3344445555555555555555555555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.68  E-value=1.4  Score=35.27  Aligned_cols=38  Identities=16%  Similarity=0.012  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ..+..+.++|..+...|++++|+..+.+|..+.|....
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~  112 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ  112 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            34677888888899999999999999999998876543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=89.63  E-value=0.15  Score=33.36  Aligned_cols=35  Identities=9%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      +.+..+..+|..++..|+++.|+..+.++..++|.
T Consensus        38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A           38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            34566778899999999999999999999999998

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=89.59  E-value=0.63  Score=35.30  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=36.9

Q ss_pred             cccCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCcc
Q 048108            5 LKNLVKLAAEKARDAAEEYFKLQNI----------DMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         5 ~~e~~~~ea~~~~~~A~~~~~~~d~----------~~A~~~~~~a~~l~p~~~~   48 (193)
                      ..+.|++.++.+...+..++..+++          ++|+..+++|..++|+...
T Consensus        28 Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~   81 (158)
T 1zu2_A           28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE   81 (158)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence            3456777888899999999988775          5999999999999999853

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=89.53  E-value=0.26  Score=37.84  Aligned_cols=41  Identities=24%  Similarity=0.158  Sum_probs=32.9

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+.+++.+..+..+|..++..|++++|+..+.++.+++ ...
T Consensus       111 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~  151 (217)
T 2pl2_A          111 ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP  151 (217)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence            34456677888888999999999999999999999988 543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=89.47  E-value=0.87  Score=29.92  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+..+..+|..++..|+++.|+..+.++...+|...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   43 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   43 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence            367889999999999999999999999999999764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=88.88  E-value=5.4  Score=29.21  Aligned_cols=31  Identities=10%  Similarity=0.002  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAK   40 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~   40 (193)
                      -.++.....+|..++..|+++.|+..+.++.
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~   33 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ   33 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence            3578888999999999999999999999884

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=88.82  E-value=0.43  Score=34.72  Aligned_cols=41  Identities=10%  Similarity=0.084  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|....+
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   80 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL   80 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            34556788999999999999999999999999999987543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=88.68  E-value=1.1  Score=33.03  Aligned_cols=40  Identities=18%  Similarity=0.186  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   43 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL   43 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH
Confidence            4567778888888888888888888888888888887643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=88.24  E-value=3.4  Score=32.97  Aligned_cols=37  Identities=14%  Similarity=0.040  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+..+|..++..|+++.|+..+.++..++|....
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  252 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL  252 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence            5677888899999999999999999999999988643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=88.08  E-value=0.99  Score=33.97  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+++.+..+..+|..++..|+++.|+..+.++..++|....
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  174 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR  174 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence            57788899999999999999999999999999999998753

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=87.82  E-value=0.19  Score=31.26  Aligned_cols=31  Identities=13%  Similarity=0.349  Sum_probs=23.3

Q ss_pred             cccccCCCCCCCCCCCCCCcccccccCcceeeCCCCccccccCccCCCcceEec
Q 048108          137 VKLMSCSCCRPQGAGDNNSPRASTYKANNTSCPRKYRAKAIFCQCQGRRKIVIL  190 (193)
Q Consensus       137 ~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~~C~~~~~v~~  190 (193)
                      .+...|+.|.+.+..                       ....|+.|+|+|.|+.
T Consensus         7 ~~~~~C~~C~GsG~~-----------------------~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            7 DLEVACPKCERAGEI-----------------------EGTPCPACSGKGVILT   37 (53)
T ss_dssp             HHEEECTTTTTSSEE-----------------------TTEECTTTTTSSEEEC
T ss_pred             CccccCCCCcceecc-----------------------CCCCCccCCCCccEEE
Confidence            445678888888761                       1368999999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=87.70  E-value=0.56  Score=41.04  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      .+++.+..+..+|..++..|++++|+..+++|.+++|....+...+..+
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3445566677778888888888888888888888888776655555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=87.49  E-value=5.3  Score=30.99  Aligned_cols=39  Identities=26%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  206 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA  206 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            344567778888888888888888888888888888754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=87.31  E-value=1.7  Score=29.44  Aligned_cols=33  Identities=9%  Similarity=-0.041  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      |+-|..+|..++..++|..|+.+++.|....+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~   37 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDE   37 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc
Confidence            677999999999999999999999999997643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=87.24  E-value=1.4  Score=35.38  Aligned_cols=45  Identities=16%  Similarity=0.079  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA   55 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~   55 (193)
                      +.+..++..|..++..|++++|+..++++..++|....+.-.+..
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~  159 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAE  159 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence            345677899999999999999999999999999998655444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=87.20  E-value=0.44  Score=40.56  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+.|+.+..+|..++..|++++|+..+.++..++|+..
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~   59 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP   59 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Confidence            34456666666666666666666666666666666543

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=87.14  E-value=0.27  Score=30.60  Aligned_cols=14  Identities=7%  Similarity=0.086  Sum_probs=11.5

Q ss_pred             ccCccCCCcceEec
Q 048108          177 IFCQCQGRRKIVIL  190 (193)
Q Consensus       177 ~~C~~C~~~~~v~~  190 (193)
                      ..|+.|+|+|.|..
T Consensus        24 ~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           24 EPCPKCLGKGVILT   37 (53)
T ss_dssp             EECTTTTTSSEEEC
T ss_pred             CcCCCCCCcEEEEE
Confidence            67999999998754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.04  E-value=2  Score=39.10  Aligned_cols=43  Identities=12%  Similarity=-0.051  Sum_probs=33.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      +.+++.++.++.+|..++..|++++|+..+.++..++|....+
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a  469 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL  469 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH
Confidence            3445566777788888889999999999999999998887543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=87.04  E-value=0.9  Score=36.46  Aligned_cols=38  Identities=13%  Similarity=0.010  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +++.+.....+|..++..|++++|+..+.++.+++|+.
T Consensus       215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            45566777888888888888888888888888888877

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=86.87  E-value=0.49  Score=40.27  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc-ccccchhhhhcCCCCCCCHHHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS-ETKSTLYKILAITDPQVDISVI   84 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~-~~~~d~Y~vLgv~~~~a~~~~I   84 (193)
                      .+++.+..+..+|..++..|+++.|+..+.++..++|....+--.+..+-..... ..-...|+.+.+ .++.....|
T Consensus        54 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~  130 (537)
T 3fp2_A           54 LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL-NGDFDGASI  130 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHH
Confidence            3456678899999999999999999999999999999975433333333222111 111455677777 655544433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=86.70  E-value=2.4  Score=34.52  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++..+..+..+|..++..|++++|+..+.++..++|+..
T Consensus        63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  101 (388)
T 1w3b_A           63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence            344556677777888888888888888888888888764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=86.48  E-value=1.6  Score=34.35  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +..+..+|..++..|+++.|+..+.++..++|...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   71 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT   71 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence            34444455555555555555555555555555443

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=86.44  E-value=0.21  Score=31.08  Aligned_cols=18  Identities=11%  Similarity=0.078  Sum_probs=16.2

Q ss_pred             cccCccCCCcceEecccC
Q 048108          176 AIFCQCQGRRKIVILRNC  193 (193)
Q Consensus       176 ~~~C~~C~~~~~v~~~~c  193 (193)
                      ...|+.|+|+|.++.++|
T Consensus         9 ~~~C~~C~GsG~~i~~~C   26 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPC   26 (53)
T ss_dssp             EEECTTTTTSCEETTEEC
T ss_pred             eccCcCCcccccCCCCcC
Confidence            468999999999999888

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=86.39  E-value=1.7  Score=33.19  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=33.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ++..+..+..+|..++..|+++.|+..+.++..++|....
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            3567788888888899999999999999999999887643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=86.33  E-value=4.3  Score=27.53  Aligned_cols=39  Identities=8%  Similarity=0.054  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ...+..+..+|..++..|+++.|+..+.++..+.+....
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   44 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD   44 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC
Confidence            356788999999999999999999999999999876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=86.09  E-value=9.3  Score=28.88  Aligned_cols=40  Identities=13%  Similarity=0.050  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHH
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDY   52 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~   52 (193)
                      +..+..+|..++..|+++.|+..+.++..++|....+-..
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  113 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ  113 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence            4456788888999999999999999999999987544333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=85.93  E-value=0.47  Score=38.10  Aligned_cols=38  Identities=24%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++.+..+..+|..++..|++++|+.++.+|..++|...
T Consensus        35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (281)
T 2c2l_A           35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (281)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            44566677788888888888888888888888888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=85.89  E-value=1.6  Score=28.78  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +.+..+|..++..|+++.|+..+.++...+|...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~   35 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA   35 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch
Confidence            3456677777788888888888888877777653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=85.59  E-value=3.1  Score=31.60  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108           16 ARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        16 ~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+.+|..++..|++++|+..++++...+|..+..
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  183 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT  183 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence            3577889999999999999999999999998643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=85.22  E-value=1.3  Score=31.15  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   76 (186)
T 3as5_A           40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV   76 (186)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            3455566666777777777777777777777766653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=85.17  E-value=0.8  Score=39.73  Aligned_cols=45  Identities=11%  Similarity=0.062  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA   55 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~   55 (193)
                      +.+..+..+|..++..|++++|+..+.+|..++|....+...+..
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~  300 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ  300 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            678889999999999999999999999999999998654444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=84.57  E-value=1.6  Score=33.07  Aligned_cols=41  Identities=17%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             cCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            7 NLVKLA-AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         7 e~~~~e-a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +.+++. +..+..+|..++..|+++.|+..+.++..++|...
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   71 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA   71 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH
Confidence            445555 67777777777778888888888888777777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=84.42  E-value=0.3  Score=36.79  Aligned_cols=45  Identities=13%  Similarity=-0.020  Sum_probs=35.2

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      +++.+..+..+|..++..|+++.|+..+.++...+|....+-..+
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  199 (243)
T 2q7f_A          155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA  199 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344566788899999999999999999999999999875443333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=84.07  E-value=3.6  Score=34.39  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCccH
Q 048108           15 KARDAAEEYFK---LQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus        15 ~~~~~A~~~~~---~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      .+..+|..++.   .|+++.|+..+.++..++|....+
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  451 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA  451 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence            66778888899   999999999999999999987543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.97  E-value=2.6  Score=27.85  Aligned_cols=41  Identities=10%  Similarity=0.104  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRV   58 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~   58 (193)
                      .-+.++|.+++.|++++|...+-+|...+|.+.   +++..++.
T Consensus        19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~---~LL~i~q~   59 (73)
T 3ax2_A           19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ---QLLQVLQQ   59 (73)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---HHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHh
Confidence            346789999999999999999999999999995   45555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=83.70  E-value=2.1  Score=35.46  Aligned_cols=42  Identities=17%  Similarity=0.114  Sum_probs=29.2

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ...++..+..+..+|..++..|+++.|+..+.++...+|...
T Consensus        19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~   60 (450)
T 2y4t_A           19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY   60 (450)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH
Confidence            344566777777888888888888888888888887777653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=83.59  E-value=5.2  Score=31.05  Aligned_cols=38  Identities=11%  Similarity=-0.036  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++.+..+..+|..++..|+++.|+..+.++..+.|...
T Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  159 (330)
T 3hym_B          122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH  159 (330)
T ss_dssp             TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence            33344566666677777777777777777777777643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=83.35  E-value=7.1  Score=32.49  Aligned_cols=112  Identities=9%  Similarity=-0.033  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh-ccc-----ccchhhhhcCCCCCCCHH-HHHHH
Q 048108           15 KARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL-SET-----KSTLYKILAITDPQVDIS-VIKKQ   87 (193)
Q Consensus        15 ~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~-~~~-----~~d~Y~vLgv~~~~a~~~-~Ik~a   87 (193)
                      .+..+|..+...|++++|+..++++..++|++.....+....-.... ..+     -..|-+.|.+ .+..... .....
T Consensus       336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i-~~~~~~~~~~~~~  414 (472)
T 4g1t_A          336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI-NQKSREKEKMKDK  414 (472)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS-CCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CcccHHHHHHHHH
Confidence            34577889999999999999999999999987643333222211111 110     1344566777 5544221 11111


Q ss_pred             H---HHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCC-chhhhhhhhhh
Q 048108           88 F---KKMALMLHPDKNSSVAADGAFKLIRSANNVLTDP-GKRKAFDNRIR  133 (193)
Q Consensus        88 Y---r~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~-~~R~~YD~~~~  133 (193)
                      .   -+.++..||+..      +.+..+..+|..+++. .....|.+.++
T Consensus       415 l~~~~~~~l~~~p~~~------~~~~~LG~~~~~~g~~~~A~~~y~kALe  458 (472)
T 4g1t_A          415 LQKIAKMRLSKNGADS------EALHVLAFLQELNEKMQQADEDSERGLE  458 (472)
T ss_dssp             HHHHHHHHHHHCC-CT------THHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            1   122344566543      3455566666666553 23444554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=83.32  E-value=0.34  Score=38.17  Aligned_cols=66  Identities=9%  Similarity=-0.054  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ   78 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~   78 (193)
                      .+..+..+|..++..|+++.|+..+.++..++|....+-..+..+-.....-  ....+-++|.+ .|+
T Consensus       235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~  302 (330)
T 3hym_B          235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRD  302 (330)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSC
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCC
Confidence            3567889999999999999999999999999998765444444333222111  11344455666 543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=83.28  E-value=2  Score=30.15  Aligned_cols=42  Identities=24%  Similarity=0.204  Sum_probs=35.3

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      +++.+..+..+|..++..|+++.|+..+.++..++|....+-
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  113 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR  113 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHH
Confidence            345567788999999999999999999999999999875433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=83.27  E-value=0.49  Score=39.22  Aligned_cols=46  Identities=17%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |.++.+...+.|..+..+|..++..|+|+.|+..|.+|..+.|...
T Consensus       168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~  213 (338)
T 2if4_A          168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF  213 (338)
T ss_dssp             TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Confidence            4555555667899999999999999999999999999999999753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=83.17  E-value=2.1  Score=28.13  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ++.+..+..+|..++..|+++.|+..+.++..+.|....
T Consensus        32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   70 (136)
T 2fo7_A           32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE   70 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence            344667788899999999999999999999999998753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=83.11  E-value=0.81  Score=40.01  Aligned_cols=40  Identities=13%  Similarity=0.069  Sum_probs=34.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +++.+..+..+|..++..|++++|+..+++|.+++|....
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   75 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK   75 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            4455677778899999999999999999999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=83.03  E-value=1.1  Score=38.07  Aligned_cols=38  Identities=13%  Similarity=-0.056  Sum_probs=20.2

Q ss_pred             CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQN-IDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d-~~~A~~~~~~a~~l~p~~   46 (193)
                      |++.+..+..++..++..|+ +++|+.++.+|..++|..
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~  165 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN  165 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence            33444445555555555553 555555555555555554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=82.72  E-value=1.7  Score=33.18  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+..+..+|..++..|++++|+..+.++..++|...
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  111 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  111 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence            345566777778888888888888888888888754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=82.59  E-value=2.1  Score=35.94  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      +.|+.++.+|..++..|+++.|+..+.++..++|+
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   38 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED   38 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence            45666666666666666666666666666666664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=82.51  E-value=9  Score=25.80  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+..+|..++..|+++.|+.++.++..+.+....
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            3567888999999999999999999999998776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.98  E-value=8  Score=30.62  Aligned_cols=36  Identities=6%  Similarity=-0.308  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +..+..+|..++..|++++|+..++++..+.|....
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            456778899999999999999999999999998653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=81.80  E-value=1.5  Score=38.56  Aligned_cols=38  Identities=5%  Similarity=-0.050  Sum_probs=20.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      +++.+..+..+|..++..|++++|+..++++.+++|..
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   56 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH   56 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            33444555555555555555555555555555555554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=81.35  E-value=1.7  Score=32.41  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus        54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   91 (243)
T 2q7f_A           54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA   91 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch
Confidence            33455566666666777777777777777777666543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=81.25  E-value=5.1  Score=34.53  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCcc
Q 048108           11 LAAEKARDAAEEYFKLQNI-DMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~-~~A~~~~~~a~~l~p~~~~   48 (193)
                      +.+..+..+|..++..|++ ++|+..+.+|..++|....
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~  138 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE  138 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH
Confidence            3567777888888888888 8888888888888887643

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=80.39  E-value=0.85  Score=36.98  Aligned_cols=13  Identities=15%  Similarity=0.253  Sum_probs=6.2

Q ss_pred             cccCccCCCcceE
Q 048108          176 AIFCQCQGRRKIV  188 (193)
Q Consensus       176 ~~~C~~C~~~~~v  188 (193)
                      ...|+.|+|+|.+
T Consensus        96 ~~~C~~C~G~g~~  108 (248)
T 1nlt_A           96 KDRCKSCNGKKVE  108 (248)
T ss_dssp             TSBCSSSTTSCEE
T ss_pred             CCCCcccCCCceE
Confidence            3445555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=80.18  E-value=3.5  Score=30.06  Aligned_cols=29  Identities=10%  Similarity=-0.090  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 048108           13 AEKARDAAEEYFKL-QNIDMAIKTLKAAKE   41 (193)
Q Consensus        13 a~~~~~~A~~~~~~-~d~~~A~~~~~~a~~   41 (193)
                      +..+..+|..++.. |+++.|+..+.++..
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           76 AEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            44455555555555 555555555555555

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=80.12  E-value=2.5  Score=34.06  Aligned_cols=38  Identities=21%  Similarity=0.062  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           10 KLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        10 ~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus        96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  133 (365)
T 4eqf_A           96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL  133 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence            34455666677777777777777777777777777653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=80.12  E-value=3.7  Score=30.88  Aligned_cols=29  Identities=14%  Similarity=0.135  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKE   41 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~   41 (193)
                      +..+..+|..++..|++++|+..+.++..
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            34444455555555555555555555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	8e-07
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-06
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-06
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-06
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-05
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-05
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-05

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 8e-07
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAF 128
           Y+ L +         IK+ +++ AL  HPDKN    A+  FK I  A +VL+DP KR+ F
Sbjct: 6   YQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64

Query: 129 DN 130
           D 
Sbjct: 65  DR 66

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA-------FKLIRSANN 117
           K   Y IL   DP  ++S +K++++K+ L+ HPDK S+    G        F  I  A  
Sbjct: 15  KKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

Query: 118 VLTDPGKRKAFDNR 131
           +L +   +K +D +
Sbjct: 74  ILGNEETKKKYDLQ 87

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 63  ETKSTLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTD 121
             K  L ++L +      D   +++ +K+ +L+LHPDK     +    + + S       
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKT 64

Query: 122 PGKRKAFDN 130
                  + 
Sbjct: 65  EVYNLRMNL 73

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 69  YKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA----FKLIRSANNVLTDPGK 124
           +K + + D  V    +KK ++K  L++HPDK +    +      F  +  A +   + G+
Sbjct: 36  WKPVGMAD-LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 94

Query: 125 RKAF 128
           +  +
Sbjct: 95  KPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 69  YKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAAD------GAFKLIRSANNVLTD 121
           + +  +    Q+D   +  +F+ +    HPDK +S +             I  A   L  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 122 PGKRKAFD 129
           P  R  + 
Sbjct: 64  PLMRAEYL 71

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (89), Expect = 3e-05
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 65  KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGA-FKLIRSANNVLTDPG 123
           K   Y+IL +     +   I+K +K++A+  HPD+N       A FK I+ A  VLTD  
Sbjct: 2   KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 124 KRKAFDN 130
           KR A+D 
Sbjct: 61  KRAAYDQ 67

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 38.2 bits (88), Expect = 9e-05
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 60  QLSETKSTLYKILAIT-DPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNV 118
            + E    L  +L +      +I +++K + K     HPDK      +   K + +    
Sbjct: 2   HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKK 58

Query: 119 LTDPGKRKAFDN 130
           + D  K     +
Sbjct: 59  MEDGVKYAHQPD 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.85
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.8
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.75
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.74
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.93
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.47
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.32
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.22
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.04
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.23
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.92
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	94.6
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	94.37
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	94.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.15
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	94.11
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	93.86
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.19
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	92.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	92.37
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	92.1
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	90.67
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	89.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	88.73
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	88.65
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	88.39
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	87.09
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	86.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	86.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	85.01
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.73
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	84.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	83.18
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	83.05
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	80.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	80.22
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	80.04

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=9.2e-24  Score=143.65  Aligned_cols=69  Identities=36%  Similarity=0.589  Sum_probs=64.4

Q ss_pred             ccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      +.|||+|||| +++||.++||++||++++++|||+++. +.+++.|..|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv-~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGV-SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCC-SSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCC-CCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            4799999999 999999999999999999999999874 66788899999999999999999999998853

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.7e-23  Score=140.31  Aligned_cols=68  Identities=35%  Similarity=0.526  Sum_probs=65.7

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .|||+|||| ++++|.++|+++|+++++++|||++..+.+.+.|+.|++||+||+||.+|+.||+++..
T Consensus         3 kdyY~iLgv-~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~   70 (77)
T d1hdja_           3 KDYYQTLGL-ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCSHHHHTC-CTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CChHHHcCC-CCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            699999999 99999999999999999999999999999999999999999999999999999998875

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.2e-22  Score=140.45  Aligned_cols=70  Identities=30%  Similarity=0.478  Sum_probs=63.5

Q ss_pred             cccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-------chHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           64 TKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS-------VAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        64 ~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~-------~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      .+.|||+|||| +++++.++||++|++|++++|||+++.       +.+++.|+.|++||+||+||.+|+.||..+..
T Consensus        14 ~~~d~Y~iLgv-~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~   90 (94)
T d1wjza_          14 LKKDWYSILGA-DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SCSCHHHHTTC-CTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             hccChHHHcCC-CCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence            35899999999 999999999999999999999999864       34678899999999999999999999987653

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.80  E-value=2.1e-21  Score=141.75  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=60.3

Q ss_pred             ccchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhhh
Q 048108           65 KSTLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIRL  134 (193)
Q Consensus        65 ~~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~  134 (193)
                      ..|||+|||| +++|  +.++||+|||+|++++|||+++++   ++|+.|++||+||+||.+|+.||..+..
T Consensus         7 ~~~ly~iLGv-~~~a~~~~~~IKkAYrkla~k~HPDk~~~~---e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGL-ERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTC-CTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---TTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCC-CCCCCCCHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            4799999999 9988  788999999999999999999754   6899999999999999999999987654

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.75  E-value=7.5e-20  Score=125.09  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=60.4

Q ss_pred             ccccchhhhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           63 ETKSTLYKILAITDPQV--DISVIKKQFKKMALMLHPDKNSSVAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        63 ~~~~d~Y~vLgv~~~~a--~~~~Ik~aYr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      +...++|+|||| ++++  +.++||++||++++++|||++++   .++|++|++||++|+|+.+|..||.++.
T Consensus         8 ~~~~~~y~iLgl-~~~~~~~~~~IkkaYr~l~~~~HPDk~g~---~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           8 ADKERLLELLKL-PRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHHTC-CSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHHHhCcccCCC---HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            445799999999 8887  99999999999999999999854   4789999999999999999999997653

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.8e-19  Score=119.76  Aligned_cols=67  Identities=21%  Similarity=0.301  Sum_probs=57.9

Q ss_pred             cchhhhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCc------hHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQ--VDISVIKKQFKKMALMLHPDKNSSV------AADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~--a~~~~Ik~aYr~l~~~~HPDk~~~~------~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .|||+|||| +++  ++.++||++|+++++++|||+....      .+.+.|..|++||+||+||.+|..|+..+.
T Consensus         1 lnyy~lLgl-~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGL-PARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTC-CSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCC-CCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            489999999 664  5689999999999999999997642      256779999999999999999999987654

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=5.6e-19  Score=125.48  Aligned_cols=79  Identities=22%  Similarity=0.344  Sum_probs=66.6

Q ss_pred             ccHHHHHHHHHHHhhcccccchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHHHHHHHcCCC
Q 048108           47 PNIDDYFTACRVHQLSETKSTLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSSVA----ADGAFKLIRSANNVLTDP  122 (193)
Q Consensus        47 ~~i~~~l~~~~~~~~~~~~~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~  122 (193)
                      .+|+.+|..+...+..  ..++|++||| ...+|.++||++||++++.+|||+++++.    +++.|+.|++||++|+||
T Consensus        16 ~~ir~lL~~l~~vl~~--~~~~y~~Lgl-~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~   92 (98)
T d1nz6a_          16 RNIRALLSTMHTVLWA--GETKWKPVGM-ADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ   92 (98)
T ss_dssp             TCHHHHHTTGGGTSCT--TCCSCCCCCG-GGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHhhhhhcCC--cccCCeecCC-CccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3577777665544433  2578999999 99999999999999999999999987543    678899999999999999


Q ss_pred             chhhhh
Q 048108          123 GKRKAF  128 (193)
Q Consensus       123 ~~R~~Y  128 (193)
                      .+|..|
T Consensus        93 ~~R~~Y   98 (98)
T d1nz6a_          93 GQKPLY   98 (98)
T ss_dssp             TCCCCC
T ss_pred             HHHhcC
Confidence            999987

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-17  Score=115.04  Aligned_cols=64  Identities=23%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             cchhhhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--chHHHHHHHHHHHHHHcCCCchhhhhhhhhh
Q 048108           66 STLYKILAITDPQVDISVIKKQFKKMALMLHPDKNSS--VAADGAFKLIRSANNVLTDPGKRKAFDNRIR  133 (193)
Q Consensus        66 ~d~Y~vLgv~~~~a~~~~Ik~aYr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~vLsd~~~R~~YD~~~~  133 (193)
                      .++|+|||| ..++|.++||+|||+|+++||||+++.  ..+.++|+.|++||++|++   +..||...+
T Consensus        16 ~~~y~iL~v-~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          16 KEVTSVVEQ-AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             HHHHHHHHH-TTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHHHHHhCC-CCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            699999999 999999999999999999999999885  3578899999999999974   566665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0014  Score=45.90  Aligned_cols=52  Identities=10%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ   60 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~   60 (193)
                      +...+..+..+|..++..||++.|+.++.++..++|+...+..+...+...+
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            3455678899999999999999999999999999999988888877776544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0036  Score=43.44  Aligned_cols=38  Identities=26%  Similarity=0.404  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+|.+..+++..++..|+|+.|+..+.++..++|+...
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~   39 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT   39 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            37899999999999999999999999999999998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0037  Score=44.63  Aligned_cols=48  Identities=27%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      +-+.|+.++..|..+++.|+|+.|+..+.++..++|+...+-..+..+
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~   53 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLA   53 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHH
Confidence            347899999999999999999999999999999999976544444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0009  Score=45.97  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDI   81 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~   81 (193)
                      .+.+++.+..+..+|..++..|++++|+.++.++..++|.....  +...........    ....|-+++.+ .|+  .
T Consensus        30 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~g~~~~~~~~~~~A~~~~~~a~~~-~p~--~  104 (117)
T d1elwa_          30 IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG--YSRKAAALEFLNRFEEAKRTYEEGLKH-EAN--N  104 (117)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTT-CTT--C
T ss_pred             HhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhH--HHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--C
Confidence            34567778889999999999999999999999999999987533  333332222211    12555566666 443  3


Q ss_pred             HHHHHHHHHH
Q 048108           82 SVIKKQFKKM   91 (193)
Q Consensus        82 ~~Ik~aYr~l   91 (193)
                      .++...+.++
T Consensus       105 ~~~~~~l~~l  114 (117)
T d1elwa_         105 PQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4555555443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.47  E-value=0.0021  Score=46.51  Aligned_cols=68  Identities=18%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCC
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQ   78 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~   78 (193)
                      .++..+..+.++|..++..|+++.|+.++.+|.+++|....  .++.....+....    ...+|-++|.+ .|+
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~--a~~~~g~~~~~l~~~~~A~~~~~~al~l-~p~  143 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK--ALYRRAQGWQGLKEYDQALADLKKAQEI-APE  143 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh--HHHhHHHHHHHccCHHHHHHHHHHHHHh-CCC
Confidence            34667777888888888888888888888888888888753  3333333332222    12667777777 554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0034  Score=41.44  Aligned_cols=49  Identities=10%  Similarity=0.097  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ   60 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~   60 (193)
                      .+..+-.+|.++...|++++|+..++++..++|+.+.+..-+..++..+
T Consensus        45 ~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            4566777899999999999999999999999999987666666665544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.37  E-value=0.0015  Score=46.91  Aligned_cols=74  Identities=15%  Similarity=0.166  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHHHHHH
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVIKKQF   88 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~Ik~aY   88 (193)
                      +.-..++|.+++..|+++.|+.++.+|..++|+..  ..+......+....    ...++-++|.+ .|+  ..+|+..+
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~--ka~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~--n~~~~~~l  141 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV--KALYKLGVANMYFGFLEEAKENLYKAASL-NPN--NLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STT--CHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhh--hhhHHhHHHHHHcCCHHHHHHHHHHHHHh-CCC--CHHHHHHH
Confidence            34556788889999999999999999999988874  33333333333222    22667777777 653  34444444


Q ss_pred             HHH
Q 048108           89 KKM   91 (193)
Q Consensus        89 r~l   91 (193)
                      ..+
T Consensus       142 ~~~  144 (153)
T d2fbna1         142 ELC  144 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.018  Score=41.35  Aligned_cols=44  Identities=14%  Similarity=0.052  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA   55 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~   55 (193)
                      +|+.+.+.+..++..|+|+.|+..+.+|..++|....+-..+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~   46 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL   46 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHH
Confidence            47778899999999999999999999999999987644433333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0026  Score=46.44  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCC
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQ   78 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~   78 (193)
                      ....++|.++++.|+++.|+.++.+|..++|+...+--.+..+-..+..-  ...+|=++|.+ .|+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~P~  128 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPN  128 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSS
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-CCC
Confidence            34556888888888888888888888888887644333333332222211  11555566677 553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0074  Score=41.05  Aligned_cols=45  Identities=16%  Similarity=0.219  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTA   55 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~   55 (193)
                      |++..+.+.|..++..|++++|+..+.++..++|+...+-..+..
T Consensus         1 ~~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~   45 (117)
T d1elwa_           1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSA   45 (117)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccc
Confidence            357788999999999999999999999999999999654443333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0027  Score=45.41  Aligned_cols=46  Identities=13%  Similarity=0.019  Sum_probs=38.3

Q ss_pred             cccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            5 LKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         5 ~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      .++.|++.+..+..+|..++..|+++.|+.++.++.+++|....+-
T Consensus        36 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_          36 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            3455677888899999999999999999999999999999885443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.50  E-value=0.037  Score=39.63  Aligned_cols=46  Identities=15%  Similarity=0.073  Sum_probs=40.7

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |.|+.+..-+.|+.+.+.|..++..|+|..|+..|.+|..+.|...
T Consensus         4 ~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~   49 (168)
T d1kt1a1           4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY   49 (168)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence            7887666668899999999999999999999999999999877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.34  E-value=0.029  Score=40.06  Aligned_cols=55  Identities=18%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQ   60 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~   60 (193)
                      ++.+++.+..+..+|..++..|+++.|+..++++..++|..+.+...+..+...+
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5667788899999999999999999999999999999999988877777775543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.023  Score=40.05  Aligned_cols=51  Identities=12%  Similarity=0.021  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLS   62 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~   62 (193)
                      ..+.+..+|..+.+.|||+.|++++.++.+++|+...+..+...++..++.
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~k  122 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK  122 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhc
Confidence            357888999999999999999999999999999998888888887765543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.033  Score=41.38  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      +.+.|..+..+|..++..|+++.|+..+.+|..++|+...+-..+.
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg   78 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG   78 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhc
Confidence            4678899999999999999999999999999999999865443333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.99  E-value=0.014  Score=42.02  Aligned_cols=74  Identities=18%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc----cccchhhhhcCCCCCCCHHHHHHHH
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE----TKSTLYKILAITDPQVDISVIKKQF   88 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~----~~~d~Y~vLgv~~~~a~~~~Ik~aY   88 (193)
                      +..+.++|.+++..|+++.|+.++.++..++|...  ..+......+....    ...+|-++|.+ .|+-  .+|....
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~--~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n--~~~~~~l  138 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE--KGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQN--KAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTC--HHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC--HHHHHHH
Confidence            45567899999999999999999999999999875  34444443333221    22788888888 6653  3444444


Q ss_pred             HHH
Q 048108           89 KKM   91 (193)
Q Consensus        89 r~l   91 (193)
                      ..+
T Consensus       139 ~~~  141 (168)
T d1kt1a1         139 FMC  141 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.92  E-value=0.075  Score=38.90  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcccc---------cchhhhhcCCCCCCCHHH
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSETK---------STLYKILAITDPQVDISV   83 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~~---------~d~Y~vLgv~~~~a~~~~   83 (193)
                      ...+..+|+.++..|++++|+..++++..++|..+.+-..+..+-........         .-+.+-||| .|+   .+
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~-~P~---~~  142 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI-DPG---PT  142 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC-CCC---HH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC-CcC---HH
Confidence            45678899999999999999999999999999988665555444322211111         122334899 775   35


Q ss_pred             HHHHHHHHHHhcCCC
Q 048108           84 IKKQFKKMALMLHPD   98 (193)
Q Consensus        84 Ik~aYr~l~~~~HPD   98 (193)
                      +...|.++.. -+|.
T Consensus       143 l~~l~~~il~-~~~~  156 (179)
T d2ff4a2         143 LRALNERILR-QQPL  156 (179)
T ss_dssp             HHHHHHHHHT-TCCC
T ss_pred             HHHHHHHHHh-CCCC
Confidence            6777777643 3444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.018  Score=41.63  Aligned_cols=46  Identities=15%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            2 WRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         2 ~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |-|+.+---+.|..+.+.|..++..|+|+.|+..|.+|..+.|...
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~   47 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES   47 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Confidence            7777775557799999999999999999999999999999998754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.37  E-value=0.024  Score=40.16  Aligned_cols=47  Identities=21%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CccccccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            1 NWRMLKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         1 ~~~~~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .|.|++|-.-++|..+.+.|..++..|+|..|+..|.+|.++.|...
T Consensus         5 ~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~   51 (153)
T d2fbna1           5 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE   51 (153)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh
Confidence            38899888788999999999999999999999999999999888654

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.011  Score=38.29  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=14.5

Q ss_pred             cccccCccCCCcceEecccC
Q 048108          174 AKAIFCQCQGRRKIVILRNC  193 (193)
Q Consensus       174 ~~~~~C~~C~~~~~v~~~~c  193 (193)
                      .....|+.|+|+|.+|.++|
T Consensus        48 ~~~~~C~~C~G~G~~i~~~C   67 (79)
T d1exka_          48 AVQQTCPHCQGRGTLIKDPC   67 (79)
T ss_dssp             EEEEECTTTTTSSEECSSBC
T ss_pred             eeeEECcccCcceeECCCCC
Confidence            34457888888888887776

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.15  E-value=0.038  Score=36.98  Aligned_cols=66  Identities=15%  Similarity=0.143  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhcc--cccchhhhhcCCCCCCC
Q 048108           14 EKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSE--TKSTLYKILAITDPQVD   80 (193)
Q Consensus        14 ~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~--~~~d~Y~vLgv~~~~a~   80 (193)
                      .-.+.+|..+++.|+++.|+..++++..++|....+-..+..+-.....-  ....+-++|.+ .|+..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~   84 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDI   84 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-ccccc
Confidence            34578899999999999999999999999998765554544443222211  11566667777 66543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.014  Score=41.99  Aligned_cols=42  Identities=21%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      ++.++..+..+..+|..++..|+++.|+.++.+|..++|+..
T Consensus        31 l~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1          31 ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            345667788899999999999999999999999999999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.011  Score=40.87  Aligned_cols=48  Identities=13%  Similarity=0.052  Sum_probs=40.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFT   54 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~   54 (193)
                      +.+++.+..+..+|..++..|+|+.|+.++.+|..++|........+.
T Consensus        32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_          32 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            446677888999999999999999999999999999998765444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.16  Score=32.74  Aligned_cols=35  Identities=9%  Similarity=-0.079  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      |+-|.+++..++..|||..|+..+++|.++.|..+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~   39 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE   39 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh
Confidence            56789999999999999999999999999987653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.19  E-value=0.12  Score=34.23  Aligned_cols=43  Identities=16%  Similarity=0.079  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNID   50 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~   50 (193)
                      .+++.+..+..+|..++..|+++.|+..+.++.+++|+...+-
T Consensus        45 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   87 (112)
T d1hxia_          45 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH   87 (112)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccch
Confidence            4566788899999999999999999999999999999986433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.035  Score=42.59  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhhccc----ccchhhhhcCCCCCC
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQLSET----KSTLYKILAITDPQV   79 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~~~~----~~d~Y~vLgv~~~~a   79 (193)
                      ++..+..+..++..++..|++++|+..+.++.+++|+...+-..+..+  ......    ...|-+.|.+ .|+-
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~l-~P~~  372 (388)
T d1w3ba_         301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV--LQQQGKLQEALMHYKEAIRI-SPTF  372 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH--HHTTTCCHHHHHHHHHHHTT-CTTC
T ss_pred             CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh-CCCC
Confidence            344566777888888888889999999988888888875433333322  222211    1444467777 6643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.18  Score=36.77  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+..+.++|..++..|+++.|+..+.+|.+++|+...
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~   71 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV   71 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh
Confidence            3566889999999999999999999999999999753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.082  Score=39.08  Aligned_cols=44  Identities=14%  Similarity=0.061  Sum_probs=37.5

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNI   49 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i   49 (193)
                      ++.+++.+..+..+|..++..|+++.|+..+.++..++|+...+
T Consensus        64 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  107 (259)
T d1xnfa_          64 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  107 (259)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             hccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhh
Confidence            34456677888999999999999999999999999999987543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.67  E-value=0.15  Score=35.71  Aligned_cols=38  Identities=21%  Similarity=0.189  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      .+|...+..|..++..|+|++|+..+.+|..++|..++
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~   44 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP   44 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh
Confidence            45778888899999999999999999999999998653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.23  Score=37.69  Aligned_cols=40  Identities=15%  Similarity=0.008  Sum_probs=33.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108            9 VKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus         9 ~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +++....+..+|..++..|+++.|+..+.++.+++|....
T Consensus        29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~   68 (388)
T d1w3ba_          29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE   68 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            4555677888888999999999999999999999998653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=2.1  Score=28.51  Aligned_cols=31  Identities=10%  Similarity=0.070  Sum_probs=28.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           18 DAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        18 ~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      +++...++.++++.|.+.|+++..++|....
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~   34 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKS   34 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH
Confidence            7888999999999999999999999999854

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.65  E-value=0.33  Score=33.73  Aligned_cols=46  Identities=11%  Similarity=-0.044  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc----HHHHHHHHH
Q 048108           12 AAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN----IDDYFTACR   57 (193)
Q Consensus        12 ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~----i~~~l~~~~   57 (193)
                      .+..+.++|..+...|++++|+..+++|.++.|...+    ...++..+.
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~  148 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  148 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHH
Confidence            3446788999999999999999999999999886532    344444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.2  Score=38.15  Aligned_cols=40  Identities=18%  Similarity=0.073  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .|++.+..+..+|..++..|+++.|+..+.++..++|...
T Consensus        48 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          48 QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            4455566666667777777777777777777777777653

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.09  E-value=0.58  Score=39.71  Aligned_cols=49  Identities=10%  Similarity=0.045  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhh
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYFTACRVHQL   61 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l~~~~~~~~   61 (193)
                      +++++++|++.+..|||.-|...+..+...+|+.+.++++++.+-..+.
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999988888876644433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.23  Score=37.77  Aligned_cols=35  Identities=14%  Similarity=0.074  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           13 AEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        13 a~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +..+..+|..++..|+++.|+..+.++..++|...
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  206 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY  206 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccccc
Confidence            45556666666666777777777777766666653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.46  E-value=0.3  Score=37.79  Aligned_cols=42  Identities=10%  Similarity=-0.076  Sum_probs=38.5

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      .+.|+..+..+..+|..+...|++++|+.++++|.+++|...
T Consensus       269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence            456788999999999999999999999999999999999754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.01  E-value=0.2  Score=34.96  Aligned_cols=51  Identities=16%  Similarity=0.133  Sum_probs=39.1

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQ-----------NIDMAIKTLKAAKEFNPDLPNIDDYFTAC   56 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~-----------d~~~A~~~~~~a~~l~p~~~~i~~~l~~~   56 (193)
                      ++.|++.+..+..+|..+...|           +|..|+.++.+|..++|+.+.....+...
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            4566777778888888887654           47999999999999999987655555444

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.73  E-value=0.88  Score=29.21  Aligned_cols=36  Identities=14%  Similarity=0.044  Sum_probs=29.8

Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108            6 KNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE   41 (193)
Q Consensus         6 ~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~   41 (193)
                      ||+--.-|-..-.+|+.+++.|.|++|+...++|..
T Consensus         1 ~~sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           1 MEGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455456788889999999999999999988877654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.63  E-value=0.22  Score=36.19  Aligned_cols=42  Identities=26%  Similarity=0.103  Sum_probs=36.5

Q ss_pred             cccCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 048108            5 LKNLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         5 ~~e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~   46 (193)
                      .++.|+..+..+..+|..++..|++++|+.++.+|....|..
T Consensus        62 Al~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            345667788899999999999999999999999999877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=83.18  E-value=1.1  Score=32.93  Aligned_cols=38  Identities=26%  Similarity=-0.057  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPN   48 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~   48 (193)
                      ..++...-+|..++..||++.|+..++++..+.|....
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~   47 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF   47 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc
Confidence            45667777899999999999999999999999998643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=83.05  E-value=0.56  Score=36.16  Aligned_cols=46  Identities=11%  Similarity=-0.045  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccHHHHH
Q 048108            8 LVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLPNIDDYF   53 (193)
Q Consensus         8 ~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~~i~~~l   53 (193)
                      .+++.+.....++..+...|+++.|+..++++.+++|+...+...+
T Consensus        25 ~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1          25 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4556677777888889999999999999999999999876544433

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.22  E-value=1.5  Score=28.51  Aligned_cols=35  Identities=14%  Similarity=-0.016  Sum_probs=30.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048108            7 NLVKLAAEKARDAAEEYFKLQNIDMAIKTLKAAKE   41 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~   41 (193)
                      +.+...|..++..|..+-+.|+|+.|+..|..|..
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34457899999999999999999999999988865

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=80.93  E-value=1.1  Score=33.03  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPD   45 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~   45 (193)
                      ..+..+..+|..++..|++++|+..+.+|..+.+.
T Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            34445555556666666666666666666555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.22  E-value=1.2  Score=34.43  Aligned_cols=40  Identities=15%  Similarity=-0.001  Sum_probs=24.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 048108            7 NLVKLAAEKARDAAEEYFKLQ-NIDMAIKTLKAAKEFNPDL   46 (193)
Q Consensus         7 e~~~~ea~~~~~~A~~~~~~~-d~~~A~~~~~~a~~l~p~~   46 (193)
                      +.|++.+..+..++..+...| ++++|+.++.++..++|..
T Consensus        71 ~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~  111 (315)
T d2h6fa1          71 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN  111 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh
Confidence            445556666666666666654 4666666666666666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.04  E-value=2.9  Score=31.38  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 048108           11 LAAEKARDAAEEYFKLQNIDMAIKTLKAAKEFNPDLP   47 (193)
Q Consensus        11 ~ea~~~~~~A~~~~~~~d~~~A~~~~~~a~~l~p~~~   47 (193)
                      +.|+.+...|..+...++|+.|+..+.+|..+.+...
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~   71 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG   71 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            3467888889999999999999999999999876543