Citrus Sinensis ID: 048113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLSTL
Secondary Structure (PSIPRED)
cHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHcccccHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAcgsernkirivksGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILngdladddnsygriSVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHssekssglTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSilkegvmpgllqlsvDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLSTL
Flexible Loop (DISEMBL)
MEEMLMDNLLNGERETQIQAANelgklsrrqkhKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSilkegvmpgllQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIdaegdtvagTTLRLVEEMIAKLSTL
Low Complexity Region (SEG)
MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEaallsllslaCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMArdlllllrdCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLSTL
Disordered region (IsUnstruct)
*********************************KLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS****GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFG*********LVEQIMQEIDAEGDTVAGTTLRLVEE********
Disordered Region (DISOPRED)
MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT*RAKNMARDLLL*****************************************VEEMIAKL***
Disordered Region (DISEMBL)
********LLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLSTL
Disordered Region (DISPRO)
MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDD*SYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLSTL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLSTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q5XEZ8	707	U-box domain-containing p	no	no	0.787	0.377	0.323	1e-20
Q9ZV31	654	U-box domain-containing p	no	no	0.825	0.428	0.320	3e-20
Q9SNC6	660	U-box domain-containing p	no	no	0.784	0.403	0.329	5e-20
O48700	771	U-box domain-containing p	no	no	0.640	0.281	0.315	3e-18
Q9CAG5	782	U-box domain-containing p	no	no	0.699	0.303	0.306	6e-18
Q9C9A6	628	U-box domain-containing p	no	no	0.769	0.415	0.325	6e-18
O22193	826	U-box domain-containing p	no	no	0.769	0.315	0.289	2e-17
Q8GWV5	760	U-box domain-containing p	no	no	0.672	0.3	0.309	6e-16
Q9C7G1	768	U-box domain-containing p	no	no	0.693	0.305	0.307	8e-16
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.725	0.354	0.295	4e-13

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 153/291 (52%), Gaps = 24/291 (8%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQKHK--LVER-GIIAPLISMLCSQDYEAIEA-AL 60
           L+D+L +   +TQ +A   +  L+R       ++ R   I  L+S+L S D E I+A A+
Sbjct: 426 LIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTD-ERIQADAV 484

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLI-LSSCLENKLEIA 119
             LL+L+  ++ NK  I +SG +  L+ VL+       +   AA L  LS   E K EI 
Sbjct: 485 TCLLNLSI-NDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIG 543

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179
            +GAI+ LV++L           G  S+  K DA   L NLS  H+  + ++ +G    L
Sbjct: 544 EAGAIEPLVDLL-----------GSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYL 592

Query: 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
           ++L+   + + G+ EKA+ +L N+ +  E  +       G I  LVE +E GS + KE+A
Sbjct: 593 VELM---DPAFGMVEKAVVVLANLATVREGKIA--IGEEGGIPVLVEVVELGSARGKENA 647

Query: 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290
            A LL +C     K+ +++++EGV+P L+ L+  GT R K  A++LL   +
Sbjct: 648 TAALLQLCTHS-PKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFK 697

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 157/306 (51%), Gaps = 26/306 (8%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE---RGIIAPLISMLC-SQDYEAI 56
           +EE+L+  L + + E +  AA E+  L+++  H  V     G I  L+++L  S D    
Sbjct: 357 IEELLL-KLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQ 415

Query: 57  EAALLSLLSLA-CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK 115
           E A+ S+L+L+ C   + KI +  SG VP ++ VLQ  S    E   A +  LS   ENK
Sbjct: 416 EHAVTSILNLSICQENKGKI-VYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENK 474

Query: 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGV 175
           + I ++GAI  LV +L         S G  S + K DA   L NL          V +G+
Sbjct: 475 VTIGAAGAIPPLVTLL---------SEG--SQRGKKDAATALFNLCIFQGNKGKAVRAGL 523

Query: 176 TYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC 235
              L++L+  +E  SG+ ++++++L  I+SS  D   E+ A   A+  LV+ I  GSP+ 
Sbjct: 524 VPVLMRLL--TEPESGMVDESLSILA-ILSSHPDGKSEVGA-ADAVPVLVDFIRSGSPRN 579

Query: 236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF 295
           KE++ A+L+ +C S   ++     K G+M  L++++ +GT R K  A     LL   S F
Sbjct: 580 KENSAAVLVHLC-SWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQ---LLNRFSRF 635

Query: 296 GSRSKQ 301
             + KQ
Sbjct: 636 NDQQKQ 641

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 146/288 (50%), Gaps = 22/288 (7%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHKLV---ERGIIAPLISMLCSQDYEAIEAA 59
           E LM  L  G  E Q  AA E+  L++R     V   E G I  L+ +L + D    E +
Sbjct: 355 EDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHS 414

Query: 60  LLSLLSLA-CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI 118
           + +LL+L+ C  E NK  IV +G +P +++VL+  S    E   A +  LS   ENK+ I
Sbjct: 415 VTALLNLSIC--ENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTI 472

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYC 178
            + GAI  LV +LN             + + K DA   L NL          + +GV   
Sbjct: 473 GALGAIPPLVVLLNEG-----------TQRGKKDAATALFNLCIYQGNKGKAIRAGVIPT 521

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238
           L +L+  +E  SG+ ++A+A+L  I+SS  +  + I  +  A+ +LVE I  GSP+ +E+
Sbjct: 522 LTRLL--TEPGSGMVDEALAILA-ILSSHPEG-KAIIGSSDAVPSLVEFIRTGSPRNREN 577

Query: 239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL 286
           A A+L+ +C S   ++     K G+M  L+ L+ +GT R K  A  LL
Sbjct: 578 AAAVLVHLC-SGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 129/241 (53%), Gaps = 24/241 (9%)

Query: 55  AIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN 114
           A E   ++L +LA  + RNK  ++ SG++P+L +++ C  +   +    A+ +  SCLE 
Sbjct: 486 AQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQS---QGPATALYLNLSCLEK 542

Query: 115 -KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS 173
            K  I SS A+   V +L  D             Q K+DA+  L+NLST    I  ++SS
Sbjct: 543 AKPVIGSSQAVSFFVNLLLQD----------TKTQCKLDALHALYNLSTYSPNIPTLLSS 592

Query: 174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP 233
            +   L  L  +S  +    EK++A+L N+ SS E   +E+  T G I  L   ++ G  
Sbjct: 593 NIIKSLQVL--ASTGNHLWIEKSLAVLLNLASSRE-GKEEMITTQGMISTLATVLDTGDT 649

Query: 234 QCKEHAVAILLLIC---KSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR 290
             +E AV+ L+++C   +SC       +L+EGV+P L+ +SV+G+ R ++ ++ LL+L R
Sbjct: 650 VEQEQAVSCLVILCTGSESCIQM----VLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFR 705

Query: 291 D 291
           +
Sbjct: 706 E 706

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 140/258 (54%), Gaps = 21/258 (8%)

Query: 39  GIIAPLISMLCS----QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQS 94
           G +  L+  L S     +  A ++  ++L +LA  + RNK  ++ SG++ +L +++   S
Sbjct: 466 GFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMI---S 522

Query: 95  TTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA 153
           +     +  A+ +  SCL E K  I SS A+  LV++L  +          I  Q K+DA
Sbjct: 523 SAESHGSATALYLNLSCLDEAKSVIGSSQAVPFLVQLLQKE----------IETQCKLDA 572

Query: 154 IATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQE 213
           +  L+NLST    I  ++SS +   L  L+ S+ ++  + EK++A+L N+ SS E    E
Sbjct: 573 LHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWI-EKSLAVLLNLASSQE-GKDE 630

Query: 214 IAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD 273
             ++ G I +L   ++ G    +E AV+ LL++C   R+     +L+EGV+P L+ +SV+
Sbjct: 631 AVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNG-RESCIQMVLQEGVIPSLVSISVN 689

Query: 274 GTWRAKNMARDLLLLLRD 291
           GT R +  ++ LL+L R+
Sbjct: 690 GTPRGREKSQKLLMLFRE 707

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 143/286 (50%), Gaps = 25/286 (8%)

Query: 13  ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSE 71
           +R T +     L K S   +  + E G I  L+ +L S  D E  E A+  +L+L+   E
Sbjct: 357 DRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSI-YE 415

Query: 72  RNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
            NK  I+ +G V  ++ VL+  S    E   A +  LS   ENK+ I +SGAI  LV++L
Sbjct: 416 HNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLL 475

Query: 132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSG 191
                     YG  SV+ K DA   L NL          V +G+   L++++  S  S  
Sbjct: 476 Q---------YG--SVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSS-SER 523

Query: 192 LTEKAIALLENIVSSSEDALQEIAAT----CGAIRALVETIEEGSPQCKEHAVAILLLIC 247
           + ++A+ +L  + S+      ++A T      AI  L++ +++  P+ +E+A AILL +C
Sbjct: 524 MADEALTILSVLASN------QVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLC 577

Query: 248 KSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS 293
           K   +K   SI + G +  L++LS DGT RAK  A  LL LLR  S
Sbjct: 578 KRDTEKL-ISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKSS 622

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 140/314 (44%), Gaps = 53/314 (16%)

Query: 25  GKLSRRQKHKLVERGIIAP-----------------LISMLCSQDYEAIEAALLSLLSLA 67
           G+  RR   +L  R + AP                 L+  L S   +    A   L  LA
Sbjct: 510 GQFWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLA 569

Query: 68  CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRL 127
             +  N+I I  SG + +L+E+L    +   E  V A+L LS    NK  IA +GAI+ L
Sbjct: 570 KHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPL 629

Query: 128 VEIL-NGDLADDDNS-----------------------------YGRISVQAKIDAIATL 157
           + +L NG     +NS                              G  + + K DA   L
Sbjct: 630 IHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATAL 689

Query: 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT 217
            NLS   +  + IV SG    L+ L+   + ++G+ +KA+A+L N+ +  E   +     
Sbjct: 690 FNLSIHQENKAMIVQSGAVRYLIDLM---DPAAGMVDKAVAVLANLATIPEG--RNAIGQ 744

Query: 218 CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR 277
            G I  LVE +E GS + KE+A A LL +  +   ++ + +L+EG +P L+ LS  GT R
Sbjct: 745 EGGIPLLVEVVELGSARGKENAAAALLQLSTNS-GRFCNMVLQEGAVPPLVALSQSGTPR 803

Query: 278 AKNMARDLLLLLRD 291
           A+  A+ LL   R+
Sbjct: 804 AREKAQALLSYFRN 817

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 125/265 (47%), Gaps = 37/265 (13%)

Query: 58  AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE 117
           AA   +  L   S  N++ I + G +  LL +L  +     E  V A+L LS    NK  
Sbjct: 491 AAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSISELNKAM 550

Query: 118 IASSGAIQRLVEILN--GDLADDD-----------------------------NSYGRIS 146
           I   GAI+ LV +LN   D A ++                             N  G+ +
Sbjct: 551 IVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGT 610

Query: 147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206
            + K DA + L NLS  H   + IV +     L++L+   +    + +KA+ALL N+ + 
Sbjct: 611 FRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELL---DPDLEMVDKAVALLANLSAV 667

Query: 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG 266
            E   Q I    G I  LVET++ GS + KE+A ++LL +C +   K+ + +L+EG +P 
Sbjct: 668 GE-GRQAIVRE-GGIPLLVETVDLGSQRGKENAASVLLQLCLNS-PKFCTLVLQEGAIPP 724

Query: 267 LLQLSVDGTWRAKNMARDLLLLLRD 291
           L+ LS  GT RAK  A+ LL   R+
Sbjct: 725 LVALSQSGTQRAKEKAQQLLSHFRN 749

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 28/263 (10%)

Query: 37  ERGIIAPLISMLCS----QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC 92
           E G +  L+  L S     +  A +   ++L +LA  + RNK  ++ SGI+P+L E+L C
Sbjct: 462 ENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEML-C 520

Query: 93  QSTTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI 151
              +    +V A+ +  SCLE  K  I SS A+  +V +L          +    VQ K+
Sbjct: 521 NPHS--HGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLL----------WTETEVQCKV 568

Query: 152 DAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL 211
           DA+ +L +LST    I  ++S+ +   L  L  S E+    TEK++A+L   +  +E   
Sbjct: 569 DALHSLFHLSTYPPNIPCLLSADLVNALQSLTISDEQR--WTEKSLAVLL-NLVLNEAGK 625

Query: 212 QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS---CRDKYRSSILKEGVMPGLL 268
            E+ +    +  L   ++ G P  +E AV++LL++C     C +     +L+EGV+P L+
Sbjct: 626 DEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEM----VLQEGVIPSLV 681

Query: 269 QLSVDGTWRAKNMARDLLLLLRD 291
            +SV+GT R +  A+ LL L R+
Sbjct: 682 SISVNGTQRGRERAQKLLTLFRE 704

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 131/281 (46%), Gaps = 35/281 (12%)

Query: 37  ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTT 96
           ER  I  L+S LCS D E   +A   L  LA  +  N+I I ++G +P+LL +L      
Sbjct: 365 ERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLR 424

Query: 97  LIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL-NGDLADDDNS-------------- 141
             E  V A+L LS   +NK  I SSGA+  +V +L NG +   +N+              
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYK 484

Query: 142 ---------------YGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS 186
                           G  S + K DA A L NL          + +G+   ++ L+  +
Sbjct: 485 VTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLV--T 542

Query: 187 EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLI 246
             +  L ++A+A+L +I+SS  +    I A    +  LVE I  G+P+ +E+A A++L +
Sbjct: 543 NPTGALMDEAMAIL-SILSSHPEGKAAIGA-AEPVPVLVEMIGSGTPRNRENAAAVMLHL 600

Query: 247 CKSCRDKYRSSILKE-GVMPGLLQLSVDGTWRAKNMARDLL 286
           C         +  +E G+M  L +L+++GT R K  A  LL
Sbjct: 601 CSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
255560920	339	ubiquitin-protein ligase, putative [Rici	0.997	0.997	0.716	1e-126
224060143	335	predicted protein [Populus trichocarpa]	0.985	0.997	0.687	1e-121
225452326	338	PREDICTED: U-box domain-containing prote	0.997	1.0	0.659	1e-119
356513963	329	PREDICTED: U-box domain-containing prote	0.964	0.993	0.653	1e-112
356558843	332	PREDICTED: U-box domain-containing prote	0.970	0.990	0.630	8e-99
297811577	327	armadillo/beta-catenin repeat family pro	0.961	0.996	0.587	3e-98
15241420	327	armadillo/beta-catenin-like repeat-conta	0.961	0.996	0.584	3e-97
224129230	379	predicted protein [Populus trichocarpa]	0.938	0.839	0.435	1e-55
296085056	367	unnamed protein product [Vitis vinifera]	0.923	0.852	0.430	4e-53
225447490	376	PREDICTED: U-box domain-containing prote	0.923	0.832	0.424	4e-53

>gi|255560920|ref|XP_002521473.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223539372|gb|EEF40963.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 1/339 (0%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           MEE ++ NL +G RE QIQAAN+LGK S +Q+HKLVERGII+PL++ML SQD EAIEAAL
Sbjct: 1   MEEFVVHNLFSGGREAQIQAANDLGKFSSKQRHKLVERGIISPLVAMLQSQDCEAIEAAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120
            +LLSLA GSERNKIRIVKSG+VPVLLE+L C + TL+EL +AA+LILSSC  NKL I S
Sbjct: 61  FALLSLAFGSERNKIRIVKSGVVPVLLELLDCPNETLLELVIAALLILSSCAPNKLAITS 120

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLL 180
            GAI  ++ +LN D ADDD +   IS+QAK+DAIATLHNLSTC Q+I  IVSSG  + LL
Sbjct: 121 LGAIPLIIGVLNQDYADDDAATSCISMQAKLDAIATLHNLSTCQQIIPSIVSSGTVFILL 180

Query: 181 QLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240
           Q+IHS EKSS L EKA+ALLENI++ SE AL + A T GAIRALVE IEEGSPQCKEHAV
Sbjct: 181 QIIHSYEKSSQLVEKAMALLENIITLSETALLQTATTGGAIRALVENIEEGSPQCKEHAV 240

Query: 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK 300
            ILLLIC+SCRDKYR  IL+EGVMPGLLQLSVDGTWRAK+ A++LLLLLRD S +G+R K
Sbjct: 241 VILLLICQSCRDKYRGLILREGVMPGLLQLSVDGTWRAKDTAQELLLLLRDYSGYGTRGK 300

Query: 301 QLKNELVEQIMQEIDAEGDTV-AGTTLRLVEEMIAKLST 338
           Q K+ELVEQIMQEIDAEG+T+   TTLRLVEEMIAKL+T
Sbjct: 301 QSKHELVEQIMQEIDAEGETIRETTTLRLVEEMIAKLNT 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060143|ref|XP_002300058.1| predicted protein [Populus trichocarpa] gi|222847316|gb|EEE84863.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/339 (68%), Positives = 280/339 (82%), Gaps = 5/339 (1%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           ME  +  NL NG RE +IQAA +LGKL+ +Q+HKL ERG+I PLISML SQDYEAIEAAL
Sbjct: 1   MEGFVAQNLCNGSREVRIQAATQLGKLNAKQRHKLAERGVIDPLISMLQSQDYEAIEAAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120
            +LLSLA G+ERNKIRIVK G++PVLLE+LQ Q+ +L EL +AA L++SSC  NKL IA+
Sbjct: 61  FALLSLAFGNERNKIRIVKLGVIPVLLELLQSQNESLTELILAAFLVISSCGANKLAIAA 120

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLL 180
           SGAI  LV+IL G+  D D+    IS+QAK+DA+ATLHNLS+CHQ+I  IVSSG+ + LL
Sbjct: 121 SGAISVLVKILGGEYDDTDS----ISMQAKLDAVATLHNLSSCHQIIPSIVSSGIVFTLL 176

Query: 181 QLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240
           QLIHS EKSS L +KA+ALLE+I++SSE+AL + +    AIRA VETIEEG+PQCKEHAV
Sbjct: 177 QLIHSYEKSSELVDKAMALLEDIIASSENALAQTSGAGDAIRAFVETIEEGTPQCKEHAV 236

Query: 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK 300
            ILLLIC+SCRDKYR  IL+EGV+PGLLQLSVDGTWRAK  A+ LLLLLRDC+S+ SR+K
Sbjct: 237 GILLLICQSCRDKYRGLILREGVIPGLLQLSVDGTWRAKEKAKQLLLLLRDCTSYRSRAK 296

Query: 301 QLKNELVEQIMQEIDAEGDTVAGT-TLRLVEEMIAKLST 338
           Q K+ELVEQIMQEIDAEG+ V GT  LRLVE+MIAKLST
Sbjct: 297 QSKHELVEQIMQEIDAEGEKVMGTKALRLVEDMIAKLST 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452326|ref|XP_002272671.1| PREDICTED: U-box domain-containing protein 3 [Vitis vinifera] gi|296087602|emb|CBI34858.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/338 (65%), Positives = 280/338 (82%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           MEE ++D LLNG+RETQI+AA +LG L  RQ+HKL E+G++ PL+SML SQD+EA+EAAL
Sbjct: 1   MEEEVVDALLNGDRETQIRAATDLGGLIGRQRHKLAEKGVVPPLLSMLHSQDFEAVEAAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120
            +LL LA GSERNK+RI K+G +PVLL +LQCQS  L++L +AA+LILSSC  NKL IA+
Sbjct: 61  FALLRLASGSERNKVRIAKAGAIPVLLSLLQCQSEVLMDLAMAALLILSSCRANKLVIAA 120

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLL 180
           SGAIQ LVE+L+GD    DN+   +S+QAK+DAI+T  NLSTCH++I  +VSSG  + LL
Sbjct: 121 SGAIQILVEMLSGDNTGGDNNGSSMSMQAKLDAISTFQNLSTCHEIIPLVVSSGAVFSLL 180

Query: 181 QLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240
           QL+   +KSS L +K I+LLE + S SE A++E+A T GAI+ALVET+EEGSPQC+EHAV
Sbjct: 181 QLLCGCDKSSELVQKVISLLETMASWSEIAVEEVAGTGGAIQALVETVEEGSPQCQEHAV 240

Query: 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK 300
            ILLLICKSCR+KYR  IL+EG+MPGLLQLSV GTWRAK+MA+DLLLLLR+C ++GSR K
Sbjct: 241 GILLLICKSCREKYRGLILREGIMPGLLQLSVHGTWRAKDMAQDLLLLLRECPNYGSRKK 300

Query: 301 QLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLST 338
           QLKNE +EQIM+EIDAEG+ VAGT LR+VEEMIAKL+ 
Sbjct: 301 QLKNEHLEQIMKEIDAEGEEVAGTALRMVEEMIAKLNV 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513963|ref|XP_003525677.1| PREDICTED: U-box domain-containing protein 7-like [Glycine max]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/338 (65%), Positives = 276/338 (81%), Gaps = 11/338 (3%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           ME+ +++NL NG+R++QIQAA ELG+LSR+Q+HKL E G++ PL+SML SQDYEAIEAAL
Sbjct: 1   MEKEVVENLWNGDRDSQIQAALELGRLSRKQRHKLEESGVMVPLVSMLHSQDYEAIEAAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIA 119
            +LLSL+ GSERNKIRI+KSG +PVL+ +L C S T +I+LT+AAML LSSC  NK+ IA
Sbjct: 61  CALLSLSFGSERNKIRIIKSGALPVLVSLLYCHSQTVIIQLTLAAMLTLSSCKANKVAIA 120

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179
           SSGAIQ L E +N +           S Q+++DAIATLHNL+TC +++  IVSSGV + L
Sbjct: 121 SSGAIQLLAEFVNSN----------CSTQSQLDAIATLHNLTTCKEIMPLIVSSGVMFSL 170

Query: 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
           L+LIHS+ KSS L EKAI LLENIVSSSE AL + A   GAI  LVETIE+GS   KEHA
Sbjct: 171 LELIHSTVKSSPLVEKAIELLENIVSSSESALCKAAGAGGAIGILVETIEDGSLLSKEHA 230

Query: 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRS 299
           V+ILLLIC+SCR+KYR  IL EGVMPGLLQLSVDGTWRAK++A++LLLLLRDCS++GSR 
Sbjct: 231 VSILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSIAQELLLLLRDCSNYGSRC 290

Query: 300 KQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLS 337
           KQ+ +EL+E+IM+EI+AEG+ +A TTLRLVEEMIAKL+
Sbjct: 291 KQINHELIERIMEEIEAEGEKLADTTLRLVEEMIAKLN 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558843|ref|XP_003547712.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 215/341 (63%), Positives = 266/341 (78%), Gaps = 12/341 (3%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           ME+ ++++L NG  E QIQAA EL KLSR+Q+H LVE G++ PLISML  ++YEAIEAAL
Sbjct: 1   MEKEVVESLWNGNTEMQIQAAVELRKLSRKQRHNLVESGVMVPLISMLHYENYEAIEAAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120
            +LLSLA GSERNK RI+KSG +PVLL +  CQS T+ ELT+A +L +SSC  NK+ IAS
Sbjct: 61  CALLSLAFGSERNKSRIIKSGALPVLLSLFHCQSQTVAELTIATLLTISSCNSNKVAIAS 120

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISP-IVSSGVTYCL 179
           SGAIQ L + LN   +         S Q ++D +ATLHNLSTC ++I+P +VSSGV   L
Sbjct: 121 SGAIQLLAQFLNSTSS---------STQFQLDTLATLHNLSTCQEIITPFVVSSGVIISL 171

Query: 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
           L+LIH+SEKSS L EKAI LLE+IV+SS+ AL E A+  GA+R LVETIE+GS Q KEHA
Sbjct: 172 LELIHTSEKSSTLVEKAIGLLEHIVTSSKSALCEAASIGGAVRTLVETIEDGSLQSKEHA 231

Query: 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRS 299
           V  LLL C+S R+K+R  IL+EGVMPGLLQLSVDGTWRAKN+A+ LLLLLRDCS++ S S
Sbjct: 232 VGTLLLFCQSSREKFRGMILREGVMPGLLQLSVDGTWRAKNLAKKLLLLLRDCSNYSSTS 291

Query: 300 -KQLKNELVEQIMQEI-DAEGDTVAGTTLRLVEEMIAKLST 338
            KQ+  E+VE+IM+EI DAEG+ +A TTLRLVEEMIAKLST
Sbjct: 292 NKQINYEVVERIMEEIDDAEGEELAETTLRLVEEMIAKLST 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811577|ref|XP_002873672.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319509|gb|EFH49931.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/339 (58%), Positives = 257/339 (75%), Gaps = 13/339 (3%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           MEE+++++LL+G RE QI+AA EL  LSR+Q+ KL ER II+PL+SML SQD    E AL
Sbjct: 1   MEEIVVESLLSGNREAQIEAAIELSNLSRKQRQKLAEREIISPLLSMLQSQDCLTTEVAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI-ELTVAAMLILSSCLENKLEIA 119
            +LLSLA GSERNK+RIVKSG VP+LLE+LQ ++  ++ EL +A +LILSSC +NK+++A
Sbjct: 61  SALLSLAFGSERNKVRIVKSGAVPMLLEILQSETKMVVLELAMAFLLILSSCNKNKVKMA 120

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179
           S+  IQ LV ++  D         R++VQAK+D IATL NLST HQ++  +++SG  Y L
Sbjct: 121 STRLIQLLVGLIGLD---------RLTVQAKVDGIATLQNLSTLHQIVPLVIASGAPYAL 171

Query: 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
           LQ+I+  EKSS L +KA+ALLENI S S +++  I    GAIR LVE IEEGS QCKEHA
Sbjct: 172 LQVINCCEKSSELADKAVALLENITSHSPESVSSIG---GAIRVLVEAIEEGSAQCKEHA 228

Query: 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRS 299
           V ILL +C + R+  R  IL+EGVMPGLLQ+SVDGT RAK MAR+LLLLLRDCS +  ++
Sbjct: 229 VGILLGVCNNDRETNRGMILREGVMPGLLQVSVDGTRRAKEMARELLLLLRDCSGYVIKN 288

Query: 300 KQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLST 338
           KQ K E+VEQIM+EID EG+ + GT L+LVEEMI+KLST
Sbjct: 289 KQSKIEIVEQIMREIDQEGERIPGTMLKLVEEMISKLST 327

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241420|ref|NP_196955.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|7573476|emb|CAB87790.1| putative protein [Arabidopsis thaliana] gi|332004659|gb|AED92042.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/339 (58%), Positives = 259/339 (76%), Gaps = 13/339 (3%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           MEE+++++LL+G RE+QI+AA EL  LSR+Q+ KL ER II+PL+SML SQD    E AL
Sbjct: 1   MEEIVVESLLSGNRESQIEAAIELTNLSRKQRQKLAEREIISPLLSMLQSQDCITTEVAL 60

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI-ELTVAAMLILSSCLENKLEIA 119
            +LLSLA GSERNK+RIVKSG VP LLE+LQ ++  ++ EL +A +LILSSC +NK+++A
Sbjct: 61  SALLSLAFGSERNKVRIVKSGAVPTLLEILQSETKMVVLELAMAFLLILSSCNKNKVKMA 120

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179
           S+    RLV++L G +  D     R+++QAK+D IATL NLST HQ++  +++SG  Y L
Sbjct: 121 ST----RLVQLLVGLIGLD-----RLTIQAKVDGIATLQNLSTLHQIVPLVIASGAPYAL 171

Query: 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
           LQ+I+  +KSS L +KA+ALLENI+S S +++  I    GAI  LVE IEEGS QCKEHA
Sbjct: 172 LQVINFCDKSSELADKAVALLENIISHSPESVSSIG---GAIGVLVEAIEEGSAQCKEHA 228

Query: 240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRS 299
           V ILL IC + R+  R  IL+EGVMPGLLQ+SVDGT RAK MAR+LLLLLRDCS +  ++
Sbjct: 229 VGILLGICNNDRETNRGMILREGVMPGLLQVSVDGTRRAKEMARELLLLLRDCSGYVIKN 288

Query: 300 KQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLST 338
           KQ K E+VEQIM+EID EG+ + GT L+LVEEMI+KLST
Sbjct: 289 KQSKIEIVEQIMREIDQEGERIPGTMLKLVEEMISKLST 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129230|ref|XP_002320533.1| predicted protein [Populus trichocarpa] gi|222861306|gb|EEE98848.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/335 (43%), Positives = 209/335 (62%), Gaps = 17/335 (5%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQ----KHKLVERGIIAPLISMLCSQDYEAIEAAL 60
           L + L++G+ +TQI+AA ++ KL R+     + KL   G+I PLI ML S +++A  A+L
Sbjct: 34  LSERLMSGDLKTQIEAARDIRKLVRKSSAKTRTKLAAAGVIQPLIFMLLSPNFDARHASL 93

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS 120
           L+LL+LA  +ERNK++IV +G VP L+E+L+ Q+ +L EL  A++L LS+   NK  IA+
Sbjct: 94  LALLNLAVRNERNKVKIVTAGAVPPLVELLKLQNGSLRELAAASILTLSAAEPNKPIIAA 153

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLL 180
           SGA   LV+IL+             SVQ K+DA+  LHNLS+C + I PIV       L+
Sbjct: 154 SGAAPLLVQILSSG-----------SVQGKVDAVTVLHNLSSCAENIHPIVDGKAVSPLI 202

Query: 181 QLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240
            L+   +K S   EKA ALLE I+S+SE+    I  + G I  LVET+E+GS    EHAV
Sbjct: 203 NLLKECKKYSKFAEKATALLE-ILSNSEEGRIAITDSDGGILTLVETVEDGSLVSTEHAV 261

Query: 241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK 300
             LL +C+SCR+KYR  ILKEG +PGLL+L+V+GT +A++ AR LL LLRD       S 
Sbjct: 262 GALLSLCQSCREKYRELILKEGAIPGLLRLTVEGTSKAQDRARTLLDLLRDTPQEKRLSS 321

Query: 301 QLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAK 335
            +   +V  I   +D   D  A T  RL+++M+ +
Sbjct: 322 SVLERIVYNIATRVDG-SDKAAETAKRLLQDMVQR 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085056|emb|CBI28471.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 207/337 (61%), Gaps = 24/337 (7%)

Query: 7   DNLLNGERETQIQAA----NELGKLSRRQKHKLVERG-IIAPLISMLCSQDYEAIEAALL 61
           + LLNG+ +++IQAA    N L   S + + K      +I PL+S+L S +  A E +LL
Sbjct: 23  ERLLNGDLDSKIQAAIDIRNILRNSSVKTRSKFTAAADVIQPLVSLLLSPNQHAAEVSLL 82

Query: 62  SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASS 121
           +LL+LA  +ERNK+RIV SG VP L+E+L+ Q+  L EL +AA+L LS+   NKL IA+S
Sbjct: 83  ALLTLAARNERNKVRIVTSGAVPPLVELLEFQNGRLRELAIAAILTLSAAAPNKLTIAAS 142

Query: 122 GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQ 181
           GA   LV+IL+             SVQ K+DA+  LH LS+C +  +P++ +     L++
Sbjct: 143 GAAPLLVQILSSG-----------SVQGKVDAVTALHYLSSCTEATTPVIDARAVSPLIK 191

Query: 182 LIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241
           L+   +K S   EK  ALLE I+S SE+    I+ + G I  LVETIE+GS    EHAV 
Sbjct: 192 LLKDCKKYSKFAEKTTALLE-ILSKSEEGQTAISNSDGGILTLVETIEDGSLVSTEHAVG 250

Query: 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ 301
            LL +C+SCR+KYR  ILKEG +PGLL+L+V+GT  A+  AR LL LLRD        K+
Sbjct: 251 ALLSLCQSCRNKYRELILKEGAIPGLLRLTVEGTPEAQERARMLLDLLRDSPP----EKR 306

Query: 302 LKNELVEQIMQEIDAE---GDTVAGTTLRLVEEMIAK 335
           L + ++E+I  +I A     D  A T  RL+++M+ +
Sbjct: 307 LASSVLERIAYDIAARVDGSDKAAETAKRLLQDMVHR 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447490|ref|XP_002264882.1| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera]

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/337 (42%), Positives = 207/337 (61%), Gaps = 24/337 (7%)

Query: 7   DNLLNGERETQIQAANELGKLSRRQKHKLVER-----GIIAPLISMLCSQDYEAIEAALL 61
           + LLNG+ +++IQAA ++  + R    K   +      +I PL+S+L S +  A E +LL
Sbjct: 32  ERLLNGDLDSKIQAAIDIRNILRNSSVKTRSKFTAAADVIQPLVSLLLSPNQHAAEVSLL 91

Query: 62  SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASS 121
           +LL+LA  +ERNK+RIV SG VP L+E+L+ Q+  L EL +AA+L LS+   NKL IA+S
Sbjct: 92  ALLTLAARNERNKVRIVTSGAVPPLVELLEFQNGRLRELAIAAILTLSAAAPNKLTIAAS 151

Query: 122 GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQ 181
           GA   LV+IL+             SVQ K+DA+  LH LS+C +  +P++ +     L++
Sbjct: 152 GAAPLLVQILSSG-----------SVQGKVDAVTALHYLSSCTEATTPVIDARAVSPLIK 200

Query: 182 LIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241
           L+   +K S   EK  ALLE I+S SE+    I+ + G I  LVETIE+GS    EHAV 
Sbjct: 201 LLKDCKKYSKFAEKTTALLE-ILSKSEEGQTAISNSDGGILTLVETIEDGSLVSTEHAVG 259

Query: 242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ 301
            LL +C+SCR+KYR  ILKEG +PGLL+L+V+GT  A+  AR LL LLRD        K+
Sbjct: 260 ALLSLCQSCRNKYRELILKEGAIPGLLRLTVEGTPEAQERARMLLDLLRDSPP----EKR 315

Query: 302 LKNELVEQIMQEIDAE---GDTVAGTTLRLVEEMIAK 335
           L + ++E+I  +I A     D  A T  RL+++M+ +
Sbjct: 316 LASSVLERIAYDIAARVDGSDKAAETAKRLLQDMVHR 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2145653	327	AT5G14510 [Arabidopsis thalian	0.961	0.996	0.539	3.9e-83
TAIR|locus:2135788	402	AT4G12710 [Arabidopsis thalian	0.935	0.788	0.373	2.9e-48
TAIR|locus:2099634	408	AT3G03440 "AT3G03440" [Arabido	0.917	0.762	0.322	2.1e-36
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.740	0.707	0.317	5.5e-22
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.707	0.672	0.323	7e-22
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.766	0.367	0.308	1.7e-21
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.766	0.342	0.319	6.8e-21
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.775	0.398	0.318	2.1e-19
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.769	0.427	0.298	2.3e-19
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.749	0.404	0.309	4.1e-19

TAIR|locus:2145653 AT5G14510 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 183/339 (53%), Positives = 242/339 (71%)

Query:     1 MEEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEXXX 60
             MEE+++++LL+G RE+QI+AA EL  LSR+Q+ KL ER II+PL+SML SQD    E   
Sbjct:     1 MEEIVVESLLSGNRESQIEAAIELTNLSRKQRQKLAEREIISPLLSMLQSQDCITTEVAL 60

Query:    61 XXXXXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLI-ELTVAAMLILSSCLENKLEIA 119
                     GSERNK+RIVKSG VP LLE+LQ ++  ++ EL +A +LILSSC +NK+++A
Sbjct:    61 SALLSLAFGSERNKVRIVKSGAVPTLLEILQSETKMVVLELAMAFLLILSSCNKNKVKMA 120

Query:   120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179
             S+    RLV++L G +  D     R+++QAK+D IATL NLST HQ++  +++SG  Y L
Sbjct:   121 ST----RLVQLLVGLIGLD-----RLTIQAKVDGIATLQNLSTLHQIVPLVIASGAPYAL 171

Query:   180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
             LQ+I+  +KSS L +KA+ALLENI+S S +++  I    GAI  LVE IEEGS QCKEHA
Sbjct:   172 LQVINFCDKSSELADKAVALLENIISHSPESVSSIG---GAIGVLVEAIEEGSAQCKEHA 228

Query:   240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMAXXXXXXXXXCSSFGSRS 299
             V ILL IC + R+  R  IL+EGVMPGLLQ+SVDGT RAK MA         CS +  ++
Sbjct:   229 VGILLGICNNDRETNRGMILREGVMPGLLQVSVDGTRRAKEMARELLLLLRDCSGYVIKN 288

Query:   300 KQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLST 338
             KQ K E+VEQIM+EID EG+ + GT L+LVEEMI+KLST
Sbjct:   289 KQSKIEIVEQIMREIDQEGERIPGTMLKLVEEMISKLST 327

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2135788 AT4G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 125/335 (37%), Positives = 185/335 (55%)

Query:     5 LMDNLLNGERETQIQAANELGKLSRRQ------KHKLVERGIIAPLISMLCSQDYEAIEX 58
             L   LL+G+ + +I+AA E+ KL R+       + KL + G+I PL+ ML S + +A   
Sbjct:    50 LSKKLLHGDLDFRIEAAKEIRKLLRKSPVKSSARSKLADAGVIPPLVPMLFSSNVDARHA 109

Query:    59 XXXXXXXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI 118
                        +ERNKI IVK+G VP L+++L+  + +L EL  AA+L LS+   NK  I
Sbjct:   110 SLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPANKAMI 169

Query:   119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYC 178
              SSG    L+++L         S G  +VQ K+DA+  LHNLS C +  +PI+ +   Y 
Sbjct:   170 ISSGVPPLLIQML---------SSG--TVQGKVDAVTALHNLSACKEYSAPILDAKAVYP 218

Query:   179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238
             L+ L+   +K S   EKA AL+E I+S SED    I +    I  LVET+E+GSP   EH
Sbjct:   219 LIHLLKECKKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIEH 278

Query:   239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMAXXXXXXXXXCSSFGSR 298
             AV  LL +C+S RDKYR  ILKEG +PGLL  +VDGT ++++ A                
Sbjct:   279 AVGALLSLCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSRDRARVLLDLLRETPREKEM 338

Query:   299 SKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMI 333
             +     ++V  I  ++D   +  A T  +L+++M+
Sbjct:   339 TPLTLEKIVYGIAVQVDG-AEKAAETAKKLLQDMV 372

GO:0005737 "cytoplasm" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 107/332 (32%), Positives = 183/332 (55%)

Query:     8 NLLNGER-ETQIQAANELGKLSRRQKHKLVER--GIIAPLISMLCSQDYEAI-EXXXXXX 63
             +L+  E  ++++ AA E+ +L++   H+        + PL+SML     E+  E      
Sbjct:    71 SLIRSEDCDSRLFAAKEIRRLTKTS-HRCRRHFSQAVEPLVSMLRFDSPESHHEAALLAL 129

Query:    64 XXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGA 123
                    E+NK+ I+++G +  ++  LQ  S TL E   A++L LS+   NK  I ++G 
Sbjct:   130 LNLAVKDEKNKVSIIEAGALEPIINFLQSNSPTLQEYASASLLTLSASANNKPIIGANGV 189

Query:   124 IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLI 183
             +  LV+++          +G  S QAK DA+  L NLST    +S I+++     +L L+
Sbjct:   190 VPLLVKVIK---------HG--SPQAKADAVMALSNLSTLPDNLSMILATKPLSPILNLL 238

Query:   184 HSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243
              SS+KSS  +EK  +L+E ++ S E+A   + +  G + A+VE +E GS Q +EHAV +L
Sbjct:   239 KSSKKSSKTSEKCCSLIEALMVSGEEARTGLVSDEGGVLAVVEVLENGSLQAREHAVGVL 298

Query:   244 LLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMAXXXXXXXXXCSSFGSRSKQLK 303
             L +C+S R KYR  IL+EGV+PGLL+L+V GT +++  A           S   RS +++
Sbjct:   299 LTLCQSDRSKYREPILREGVIPGLLELTVQGTSKSRIKAQRLLCLLRNSES--PRS-EVQ 355

Query:   304 NELVEQIMQEIDA--EGDTVAGTTLRLVEEMI 333
              + +E I+  + +  +GD  +G   +++ EM+
Sbjct:   356 PDTIENIVSSLISHIDGDDQSGKAKKMLAEMV 387

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 86/271 (31%), Positives = 136/271 (50%)

Query:    15 ETQIQAANELGKLSRRQKH---KLVERGIIAPLISMLCSQDYEAIEXXXXXXXXXXCGSE 71
             + Q QAA E+  LS+ +     K+ + G I PLIS++ S D +  E             E
Sbjct:    78 DEQKQAAMEIRLLSKNKPENRIKIAKAGAIKPLISLISSSDLQLQEYGVTAILNLSLCDE 137

Query:    72 RNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
              NK  I  SG +  L+  L+  + T  E    A+L LS   ENK+ I  SGAI  LV +L
Sbjct:   138 -NKESIASSGAIKPLVRALKMGTPTAKENAACALLRLSQIEENKVAIGRSGAIPLLVNLL 196

Query:   132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSG 191
                   +   +     +AK DA   L++L +  +     V SG+   L++L+  ++  S 
Sbjct:   197 ------ETGGF-----RAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELM--ADFGSN 243

Query:   192 LTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCR 251
             + +K+ A + +++ S  ++   I    G +  LVE +E G+ + KE AV+ILL +C+   
Sbjct:   244 MVDKS-AFVMSLLMSVPESKPAIVEE-GGVPVLVEIVEVGTQRQKEMAVSILLQLCEESV 301

Query:   252 DKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
               YR+ + +EG +P L+ LS  GT RAK  A
Sbjct:   302 -VYRTMVAREGAIPPLVALSQAGTSRAKQKA 331

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 84/260 (32%), Positives = 133/260 (51%)

Query:    15 ETQIQAANELGKLSRRQKH---KLVERGIIAPLISMLCSQDYEAIEXXXXXXXXXXCGSE 71
             E Q QAA E+  LS+ +     KL + G I PL+S++ S D +  E             E
Sbjct:    76 EEQKQAAMEIRLLSKNKPENRIKLAKAGAIKPLVSLISSSDLQLQEYGVTAVLNLSLCDE 135

Query:    72 RNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
              NK  IV SG V  L+  L+  + T  E    A+L LS   ENK+ I  SGAI  LV +L
Sbjct:   136 -NKEMIVSSGAVKPLVNALRLGTPTTKENAACALLRLSQVEENKITIGRSGAIPLLVNLL 194

Query:   132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSG 191
                    +N       +AK DA   L++L + ++  +  V SG+   L++L+   E  S 
Sbjct:   195 -------ENG----GFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVELMIDFE--SD 241

Query:   192 LTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCR 251
             + +K+ A + N++ S+ ++   +    G +  LVE +E G+ + KE +V+ILL +C+   
Sbjct:   242 MVDKS-AFVMNLLMSAPESKPAVVEE-GGVPVLVEIVEAGTQRQKEISVSILLQLCEESV 299

Query:   252 DKYRSSILKEGVMPGLLQLS 271
               YR+ + +EG +P L+ LS
Sbjct:   300 -VYRTMVAREGAVPPLVALS 318

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 87/282 (30%), Positives = 141/282 (50%)

Query:     5 LMDNLLNGERETQIQAANELGKLSRRQKHK--LVERGIIAP-LISMLCSQDYEAIEXXXX 61
             L+D+L +   +TQ +A   +  L+R       ++ R    P L+S+L S D E I+    
Sbjct:   426 LIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTD-ERIQADAV 484

Query:    62 XXXXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIAS 120
                     ++ NK  I +SG +  L+ VL+       +   AA L   S +E  K EI  
Sbjct:   485 TCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGE 544

Query:   121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLL 180
             +GAI+ LV++L           G  S+  K DA   L NLS  H+  + ++ +G    L+
Sbjct:   545 AGAIEPLVDLL-----------GSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLV 593

Query:   181 QLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240
             +L+   + + G+ EKA+ +L N+ +  E  +  I    G I  LVE +E GS + KE+A 
Sbjct:   594 ELM---DPAFGMVEKAVVVLANLATVREGKIA-IGEE-GGIPVLVEVVELGSARGKENAT 648

Query:   241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
             A LL +C     K+ +++++EGV+P L+ L+  GT R K  A
Sbjct:   649 AALLQLCTHS-PKFCNNVIREGVIPPLVALTKSGTARGKEKA 689

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 90/282 (31%), Positives = 142/282 (50%)

Query:     5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVE--R-GIIAPLISMLCSQDYEAIEXXXX 61
             L+++L +G  + +  AA E+  L+       V   R G I PL+S+L S++    E    
Sbjct:   477 LVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVT 536

Query:    62 XXXXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-S 120
                     SE NK  IV+ G +  L+ VL   +    E + A++  LS    N+  I  S
Sbjct:   537 ALLNLSI-SELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595

Query:   121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLL 180
             + AIQ LV +L           G+ + + K DA + L NLS  H   + IV +     L+
Sbjct:   596 NAAIQALVNLL-----------GKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLV 644

Query:   181 QLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV 240
             +L+   +    + +KA+ALL N+ S+  +  Q I    G I  LVET++ GS + KE+A 
Sbjct:   645 ELL---DPDLEMVDKAVALLANL-SAVGEGRQAIVRE-GGIPLLVETVDLGSQRGKENAA 699

Query:   241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
             ++LL +C +   K+ + +L+EG +P L+ LS  GT RAK  A
Sbjct:   700 SVLLQLCLNS-PKFCTLVLQEGAIPPLVALSQSGTQRAKEKA 740

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 90/283 (31%), Positives = 136/283 (48%)

Query:     3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLV---ERGIIAPLISMLCSQDYEAIEXX 59
             E LM  L  G  E Q  AA E+  L++R     V   E G I  L+ +L + D   I+  
Sbjct:   355 EDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPD-SRIQEH 413

Query:    60 XXXXXXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
                        E NK  IV +G +P +++VL+  S    E   A +  LS   ENK+ I 
Sbjct:   414 SVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIG 473

Query:   120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCL 179
             + GAI  LV +LN     +    G      K DA   L NL          + +GV   L
Sbjct:   474 ALGAIPPLVVLLN-----EGTQRG------KKDAATALFNLCIYQGNKGKAIRAGVIPTL 522

Query:   180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
              +L+  +E  SG+ ++A+A+L  I+SS  +  + I  +  A+ +LVE I  GSP+ +E+A
Sbjct:   523 TRLL--TEPGSGMVDEALAILA-ILSSHPEG-KAIIGSSDAVPSLVEFIRTGSPRNRENA 578

Query:   240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
              A+L+ +C S   ++     K G+M  L+ L+ +GT R K  A
Sbjct:   579 AAVLVHLC-SGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKA 620

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 240 (89.5 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 84/281 (29%), Positives = 134/281 (47%)

Query:     5 LMDNLLNGERETQIQAANELGKLSRRQKHK---LVERGIIAPLISMLCSQDYEAIEXXXX 61
             LM+ L +G ++ Q  AA E+  L++R  +    + E G I  L+++L S D    E    
Sbjct:   328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387

Query:    62 XXXXXXCGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASS 121
                      E NK  IV S  +P ++EVL+  S    E   A +  LS   ENK+ I ++
Sbjct:   388 ALLNLSI-HENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAA 446

Query:   122 GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQ 181
             GAI  L+ +L     D        S + K DA   + NL          V +G+   L+ 
Sbjct:   447 GAIPPLINLL----CDG-------SPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMN 495

Query:   182 LIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA 241
              +   + + G+ ++A++LL  +  + E  +  + A    I  LVE I+ GSP+ +E+A A
Sbjct:   496 FL--VDPTGGMIDEALSLLSILAGNPEGKI--VIARSEPIPPLVEVIKTGSPRNRENAAA 551

Query:   242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
             IL L+C +  ++  ++    GV   L +LS  GT RAK  A
Sbjct:   552 ILWLLCSADTEQTLAA-KAAGVEDALKELSETGTDRAKRKA 591

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 84/271 (30%), Positives = 132/271 (48%)

Query:    13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-DYEAIEXXXXXXXXXXCGSE 71
             +R T +     L K S   +  + E G I  L+ +L S  D E  E             E
Sbjct:   357 DRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSI-YE 415

Query:    72 RNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL 131
              NK  I+ +G V  ++ VL+  S    E   A +  LS   ENK+ I +SGAI  LV++L
Sbjct:   416 HNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLL 475

Query:   132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSG 191
                       YG  SV+ K DA   L NL          V +G+   L++++  S  S  
Sbjct:   476 Q---------YG--SVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSS-SER 523

Query:   192 LTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCR 251
             + ++A+ +L ++++S++ A   I     AI  L++ +++  P+ +E+A AILL +CK   
Sbjct:   524 MADEALTIL-SVLASNQVAKTAILRA-NAIPPLIDCLQKDQPRNRENAAAILLCLCKRDT 581

Query:   252 DKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
             +K   SI + G +  L++LS DGT RAK  A
Sbjct:   582 EKL-ISIGRLGAVVPLMELSRDGTERAKRKA 611

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011998 hypothetical protein (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-11
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-04

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 24/101 (23%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 33  HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC 92
             +++ G +  L+S+L S D      A  +L +L+ G+  N   +V++G +P L+++L+ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 93  QSTTLIELTVAAM-LILSSCLENKLEIASSGAIQRLVEILN 132
           +   +++  + A+  + +   +NKL +  +G + +LV +L+
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAA 59
             L+  L + +   Q +AA  L  LS         +VE G +  L+ +L S+D E ++AA
Sbjct: 10  PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS 110
           L +L +LA G E NK+ ++++G VP L+ +L   +  + +    A+  L+S
Sbjct: 70  LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 77  IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDL 135
           ++++G +P L+ +L      +      A+  LS+   +N   +  +G +  LV++L  + 
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE- 61

Query: 136 ADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV-SSGVTYCLLQLIHSSEKSSGLTE 194
                       +    A+  L NL+   +    IV  +G    L+ L+ SS +   + +
Sbjct: 62  ----------DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNED--IQK 109

Query: 195 KAIALLENIVS 205
            A   L N+ S
Sbjct: 110 NATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 34/259 (13%)

Query: 9   LLNGERETQIQAANELGKLSRRQ--KHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSL 66
           L +G    ++ AA  LG L + +  + K++  G I PL+S+L S   EA +AA  ++ ++
Sbjct: 67  LRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAV 126

Query: 67  ACGSERNKIRI---VKSGIVPVLLEVLQC---QSTTLIELTVAAMLILSSCLEN--KLEI 118
           + G   + +        G+VP L + LQ    Q   +  L   A+  L    +      +
Sbjct: 127 SSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL-STCHQLISPIVSSGVTY 177
            + G     V+IL   L+  ++        A+ +A + L  L       IS ++ +G   
Sbjct: 187 EAGG-----VDILVKLLSSGNS-------DAQANAASLLARLMMAFESSISKVLDAGAVK 234

Query: 178 CLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC-- 235
            LL+L+    + S   E A A LE + S S++A Q IA   G I AL+      S +   
Sbjct: 235 QLLKLLGQGNEVSVRAEAAGA-LEALSSQSKEAKQAIADA-GGIPALINATVAPSKEFMQ 292

Query: 236 -------KEHAVAILLLIC 247
                  +E+A+  L  IC
Sbjct: 293 GEFAQALQENAMGALANIC 311

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 15/133 (11%)

Query: 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQ-LISPIVSSG 174
             +  +G +  LV +L         S    +VQ   +A   L NLS  +   I  +V +G
Sbjct: 1   EAVIQAGGLPALVSLL---------SSSDENVQR--EAAWALSNLSAGNNDNIQAVVEAG 49

Query: 175 VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQ 234
               L+QL+ S      + + A+  L N+ +  ED    +    G +  LV  ++  +  
Sbjct: 50  GLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNKLIVLE-AGGVPKLVNLLDSSNED 106

Query: 235 CKEHAVAILLLIC 247
            +++A   L  + 
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.98
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.9
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.87
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.83
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.71
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.69
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.69
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.68
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.65
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.56
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.53
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.51
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.47
PRK09687	280	putative lyase; Provisional	99.43
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.39
PRK09687	280	putative lyase; Provisional	99.36
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.29
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.29
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.29
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.27
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.21
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.2
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.17
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.16
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.13
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.08
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.08
KOG2973	353	consensus Uncharacterized conserved protein [Funct	99.04
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.04
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.02
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.94
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.92
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.9
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.86
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.86
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.82
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.81
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.76
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.75
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.68
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.66
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.62
PTZ00429	746	beta-adaptin; Provisional	98.6
PF05536	543	Neurochondrin: Neurochondrin	98.49
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.49
PTZ00429	746	beta-adaptin; Provisional	98.44
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.38
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.37
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.33
TIGR02270	410	conserved hypothetical protein. Members are found	98.32
PF05536	543	Neurochondrin: Neurochondrin	98.31
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.29
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.22
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.22
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.17
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.13
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.13
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.11
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.11
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.1
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.08
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.06
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.05
TIGR02270	410	conserved hypothetical protein. Members are found	98.05
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.02
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.94
COG5369	743	Uncharacterized conserved protein [Function unknow	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.88
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.87
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.86
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.85
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.85
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.84
COG5369	743	Uncharacterized conserved protein [Function unknow	97.84
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.83
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.82
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.79
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.78
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.78
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.77
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.76
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.76
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.7
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.63
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.62
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.61
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.55
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.53
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.52
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.41
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.39
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.39
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.32
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.3
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.27
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.27
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.27
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.26
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.19
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.18
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.15
PF05004	309	IFRD: Interferon-related developmental regulator (	97.07
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.07
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.06
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.0
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.98
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.96
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.96
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.94
PF05004	309	IFRD: Interferon-related developmental regulator (	96.94
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.91
KOG3036	293	consensus Protein involved in cell differentiation	96.89
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.89
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.86
KOG3036	293	consensus Protein involved in cell differentiation	96.85
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.69
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.63
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.5
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.49
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.48
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.47
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.44
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.42
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	96.39
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.36
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.32
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.32
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.3
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.29
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.28
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.27
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.26
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.21
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.21
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.16
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.07
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.01
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.96
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.92
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.89
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.85
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.79
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.75
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.7
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	95.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	95.6
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	95.59
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	95.59
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.57
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.44
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	95.43
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.43
KOG0567	289	consensus HEAT repeat-containing protein [General	95.37
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.32
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.31
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	95.26
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	95.19
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.03
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.0
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.92
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.9
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.89
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.84
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.78
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.7
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.58
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.54
KOG2025	892	consensus Chromosome condensation complex Condensi	94.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.19
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.16
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.09
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	94.08
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.03
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	93.82
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.79
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.59
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.59
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.47
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.01
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.99
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.9
KOG2062	929	consensus 26S proteasome regulatory complex, subun	92.57
KOG4653	982	consensus Uncharacterized conserved protein [Funct	92.42
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	92.31
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.18
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.16
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	92.0
KOG0414	1251	consensus Chromosome condensation complex Condensi	91.84
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.35
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.35
KOG0567	289	consensus HEAT repeat-containing protein [General	91.16
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	91.08
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	90.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.83
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.7
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	90.54
KOG0414	1251	consensus Chromosome condensation complex Condensi	90.47
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	90.46
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.43
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.38
KOG2025	892	consensus Chromosome condensation complex Condensi	90.29
KOG2062	929	consensus 26S proteasome regulatory complex, subun	89.91
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.77
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	89.3
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	89.28
KOG2956	516	consensus CLIP-associating protein [General functi	89.28
PRK14707	2710	hypothetical protein; Provisional	88.82
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.59
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.55
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	88.31
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.24
KOG2933	334	consensus Uncharacterized conserved protein [Funct	88.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.06
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	87.73
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	86.3
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.25
KOG2956	516	consensus CLIP-associating protein [General functi	85.74
COG5098	1128	Chromosome condensation complex Condensin, subunit	85.73
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	85.68
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	85.18
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	85.12
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.11
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.1
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	85.09
COG5098	1128	Chromosome condensation complex Condensin, subunit	84.74
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.58
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	83.19
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	83.03
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.89
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	82.82
COG5656	970	SXM1 Importin, protein involved in nuclear import	82.76
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	82.73
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.66
KOG1243	690	consensus Protein kinase [General function predict	82.61
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	82.39
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	81.98
KOG2137	700	consensus Protein kinase [Signal transduction mech	81.44
COG5116	926	RPN2 26S proteasome regulatory complex component [	81.31
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	80.84
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	80.19

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=278.21  Aligned_cols=316  Identities=19%  Similarity=0.203  Sum_probs=273.6

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +++||.+|.+++.+.|..++++|..++.+   .++.+.+.|+++.|+++|++++++.|..|++++++++.++++++..++
T Consensus       406 ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi  485 (2102)
T PLN03200        406 KKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT  485 (2102)
T ss_pred             hhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            47899999999999999999999999965   889999999999999999999999999999999999998889999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      ++|++|.|+++|.++++.+++.|+|+|.|++.++++ +..|.+.|++++|+++|++           +++..+..|+++|
T Consensus       486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-----------gd~~~q~~Aa~AL  554 (2102)
T PLN03200        486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-----------GGPKGQEIAAKTL  554 (2102)
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-----------CCHHHHHHHHHHH
Confidence            999999999999999999999999999999986655 5556688999999999999           7889999999999


Q ss_pred             HhhcCCCCCh-------------------------------------HH-HHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113          158 HNLSTCHQLI-------------------------------------SP-IVSSGVTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       158 ~nLs~~~~~~-------------------------------------~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                      .||+...++.                                     .. ....|+++.|+++++++  ++.+++.|+++
T Consensus       555 ~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~i  632 (2102)
T PLN03200        555 TKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASV  632 (2102)
T ss_pred             HHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHH
Confidence            9996422111                                     11 11358999999999986  57899999999


Q ss_pred             HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113          200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK  279 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (339)
                      |.|.++..++.+..++. .|++++|+.+|++++.+++..++++|.+++.......+..+++.|++|+|++++.+.+..++
T Consensus       633 LsnL~a~~~d~~~avv~-agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~  711 (2102)
T PLN03200        633 LADIFSSRQDLCESLAT-DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA  711 (2102)
T ss_pred             HHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence            99777777888888887 89999999999999999999999999999976555556678899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113          280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v  333 (339)
                      +.|+.+|.+|...++.  ..+....+++..+++.+....++.++.|.+.|..+-
T Consensus       712 e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~  763 (2102)
T PLN03200        712 EQAVCALANLLSDPEV--AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL  763 (2102)
T ss_pred             HHHHHHHHHHHcCchH--HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            9999999999998762  334456788888888886666777888877776553

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.8e-30  Score=270.09  Aligned_cols=318  Identities=21%  Similarity=0.249  Sum_probs=272.5

Q ss_pred             cHHHHHHHcCCCHH-HHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            2 EEMLMDNLLNGERE-TQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~-~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      ++.|+.++++.++. ++..++.+|+.+..+  .++.+.+.|+++.|+.+|...+.++|..++++|.+|+.++++.+..+.
T Consensus       364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi  443 (2102)
T PLN03200        364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG  443 (2102)
T ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            46789999988766 488899999988877  788888999999999999999999999999999999998899999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|++|.|+++|.++++..++.|++++.|++. +++++..|.+.|+||+|+++|.+           ++..+++.|+++|
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-----------~~~~iqeeAawAL  512 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-----------GSQKAKEDSATVL  512 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence            99999999999999999999999999999996 55678899999999999999998           7999999999999


Q ss_pred             HhhcCCCCChHHHH-hcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhh--------------------------
Q 048113          158 HNLSTCHQLISPIV-SSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDA--------------------------  210 (339)
Q Consensus       158 ~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~--------------------------  210 (339)
                      .|++.++++++.++ +.|++++|+++|+++  +.+.++.|+++|+| +....+.                          
T Consensus       513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~n-Li~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLg  589 (2102)
T PLN03200        513 WNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTK-LVRTADAATISQLTALLLGDLPESKVHVLDVLG  589 (2102)
T ss_pred             HHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHH-HHhccchhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence            99999776666655 679999999999986  47888999999994 5321111                          


Q ss_pred             -----------hHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113          211 -----------LQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK  279 (339)
Q Consensus       211 -----------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (339)
                                 ........|+++.|+++++++++.+++.|+++|.+++...+ +.+..++..|++|+|+.++++++..++
T Consensus       590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~-d~~~avv~agaIpPLV~LLss~~~~v~  668 (2102)
T PLN03200        590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ-DLCESLATDEIINPCIKLLTNNTEAVA  668 (2102)
T ss_pred             HHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHHHHhcCChHHH
Confidence                       11111236899999999999999999999999999998764 478889999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      +.|+++|.+++.+....+....+..+.++.++..+.....++.+.|...|+.+..
T Consensus       669 keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~  723 (2102)
T PLN03200        669 TQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS  723 (2102)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence            9999999999976543222234667889998888877778889999998888754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.4e-30  Score=237.89  Aligned_cols=315  Identities=17%  Similarity=0.215  Sum_probs=258.0

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.||..|. ..++..+.+|+|+|.|++.+   ..+.+++.|++|.++.++.+++.++++.|.|+|+|++.+.+..|..+.
T Consensus       112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl  191 (514)
T KOG0166|consen  112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL  191 (514)
T ss_pred             HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH
Confidence            56888886 55699999999999999986   677888999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHhhcCCCh-hHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQST-TLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      +.|++++|+.++..+++ .....+.|+|.||+.... ....-.-..++|.|.+++++           .++.+...|+++
T Consensus       192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~-----------~D~~Vl~Da~WA  260 (514)
T KOG0166|consen  192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS-----------TDEEVLTDACWA  260 (514)
T ss_pred             hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHH
Confidence            99999999999998865 688899999999997653 33333346789999999999           899999999999


Q ss_pred             HHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChH
Q 048113          157 LHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQ  234 (339)
Q Consensus       157 L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~  234 (339)
                      |.+|+.. ++....+++.|+++.|+++|...  +..++..|+++++|..+.++...+.+.+ .|+++.|..++. +..+.
T Consensus       261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~  337 (514)
T KOG0166|consen  261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKES  337 (514)
T ss_pred             HHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchh
Confidence            9999975 45667778999999999999985  4678899999999655555555666666 999999999998 55677


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113          235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI  314 (339)
Q Consensus       235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~  314 (339)
                      ++..|+|++.|++..... ..+.++++|.+|.|+.++++++.+.|..|+|++.|++.++...+-...+..+.+..+...+
T Consensus       338 ikkEAcW~iSNItAG~~~-qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL  416 (514)
T KOG0166|consen  338 IKKEACWTISNITAGNQE-QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL  416 (514)
T ss_pred             HHHHHHHHHHHhhcCCHH-HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc
Confidence            999999999999997654 6788899999999999999999999999999999999877643222233344444444443


Q ss_pred             HhcCcccchHHHHHHHHH
Q 048113          315 DAEGDTVAGTTLRLVEEM  332 (339)
Q Consensus       315 ~~~~~~~~~~a~~~l~~~  332 (339)
                      ...+.++-..+...+..+
T Consensus       417 ~~~D~~ii~v~Ld~l~ni  434 (514)
T KOG0166|consen  417 TCPDVKIILVALDGLENI  434 (514)
T ss_pred             cCCChHHHHHHHHHHHHH
Confidence            333333333444444444

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=4.4e-31  Score=228.83  Aligned_cols=311  Identities=22%  Similarity=0.274  Sum_probs=273.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      |+.-..++.-++|+.++.++.+++..  +|..+...|++.++.++-++.+..+|++|+.+|.+++. ..++|+.++.+|+
T Consensus       131 Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~  209 (550)
T KOG4224|consen  131 LILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGG  209 (550)
T ss_pred             HHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCC
Confidence            44444567778999999999999875  99999999999999999899999999999999999999 7999999999999


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcc--hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSG--AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      +|.|+.++.+++..++.+++.++.|++-+...|..+++.+  .++.|++++++           +++.++-.|..+|.||
T Consensus       210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~-----------~s~kvkcqA~lALrnl  278 (550)
T KOG4224|consen  210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD-----------GSDKVKCQAGLALRNL  278 (550)
T ss_pred             chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC-----------CChHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999988888776  99999999999           8999999999999999


Q ss_pred             cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHH
Q 048113          161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHA  239 (339)
Q Consensus       161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a  239 (339)
                      +.+.+....++++|.+|.++++++++  ..+.......++. +++.+|-|-.-+++ .|++.+||++|+.+ ++++|-.|
T Consensus       279 asdt~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIr-nisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchA  354 (550)
T KOG4224|consen  279 ASDTEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIR-NISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHA  354 (550)
T ss_pred             cccchhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHh-hcccccCcccceec-ccchhHHHHHHhcCCchhhhhhH
Confidence            99999999999999999999999885  4677777788888 79999999988987 89999999999975 56799999


Q ss_pred             HHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCc
Q 048113          240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGD  319 (339)
Q Consensus       240 ~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  319 (339)
                      ..+|++|+..+ ++.+..+.+.|++|.|.+++.++.-.+|..-..++..|+-...+  .......+++.-++.+...+.+
T Consensus       355 vstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~--k~~lld~gi~~iLIp~t~s~s~  431 (550)
T KOG4224|consen  355 VSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND--KEALLDSGIIPILIPWTGSESE  431 (550)
T ss_pred             HHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--HHHHhhcCCcceeecccCccch
Confidence            99999999865 45789999999999999999999999998888888888876553  3344455556655555556779


Q ss_pred             ccchHHHHHHHHHHH
Q 048113          320 TVAGTTLRLVEEMIA  334 (339)
Q Consensus       320 ~~~~~a~~~l~~~v~  334 (339)
                      ++++.|...|.+.-.
T Consensus       432 Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  432 EVRGNAAAALINLSS  446 (550)
T ss_pred             hhcccHHHHHHhhhh
Confidence            999998888776543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.8e-29  Score=216.20  Aligned_cols=275  Identities=21%  Similarity=0.269  Sum_probs=253.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      +++..+=++.+..+|..+..+|.+++..  +|+.++..|++|.|+.+++++++++|..++.++.+++. +..+|..+++.
T Consensus       170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqa  248 (550)
T KOG4224|consen  170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQA  248 (550)
T ss_pred             hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhc
Confidence            3566656788999999999999999986  99999999999999999999999999999999999999 79999999999


Q ss_pred             C--ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           81 G--IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        81 g--~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      |  .+|.|+++++++++.++..|.-+|.||+.+..++..|.+.|++|.+++++++           ...+.......++.
T Consensus       249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs-----------~~~plilasVaCIr  317 (550)
T KOG4224|consen  249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQS-----------PMGPLILASVACIR  317 (550)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhC-----------cchhHHHHHHHHHh
Confidence            8  9999999999999999999999999999999999999999999999999999           67777888889999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH  238 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  238 (339)
                      |++..+-|-..|+++|++.+||++|+.++ +++++-+|..+|.|+......++..+.+ .|+||.+..++.++...+|+.
T Consensus       318 nisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqse  395 (550)
T KOG4224|consen  318 NISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSE  395 (550)
T ss_pred             hcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHH
Confidence            99999999999999999999999999874 6789999999999443447788888887 999999999999999999999


Q ss_pred             HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ...|+..|+-.+  ..+..+.+.|.+|.|+.+..+.+..++-+|+.+|-||+...
T Consensus       396 isac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  396 ISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            999999999764  36799999999999999999999999999999999998753

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-28  Score=223.49  Aligned_cols=309  Identities=18%  Similarity=0.262  Sum_probs=255.5

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      ++..+..+.|+++..+..+...++.+...    --...+..|+||.++.+|+. .++.++..|+|+|.|+|.++.+.-..
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            35677888899999999999999998765    34455566999999999974 57999999999999999999999999


Q ss_pred             HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           77 IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      ++++|++|.++.++.+++..+++.|.|+|.|++.+. .+|..+.+.|++++|+.++..+          .......++.|
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~----------~~~~~lRn~tW  217 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS----------DKLSMLRNATW  217 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc----------cchHHHHHHHH
Confidence            999999999999999999999999999999999654 5699999999999999999883          33478889999


Q ss_pred             HHHhhcCCCCChHHHHh-cCcHHHHHHHhhccccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113          156 TLHNLSTCHQLISPIVS-SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS-SSEDALQEIAATCGAIRALVETIEEGSP  233 (339)
Q Consensus       156 ~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  233 (339)
                      +|.|||....-...+.. ..++|.|..++.+.  ++.+...|++++. .++ ..++....+++ .|+++.|+++|.+.++
T Consensus       218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAls-yLsdg~ne~iq~vi~-~gvv~~LV~lL~~~~~  293 (514)
T KOG0166|consen  218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALS-YLTDGSNEKIQMVID-AGVVPRLVDLLGHSSP  293 (514)
T ss_pred             HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH-HHhcCChHHHHHHHH-ccchHHHHHHHcCCCc
Confidence            99999996654444433 37899999999985  6899999999999 666 55666677776 9999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHH
Q 048113          234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQ  312 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~  312 (339)
                      .++..|+.++.|++..+.. ..+.++..|++|.|..++. +....++..|+|++.|+..+... +-+..++.+.++.++.
T Consensus       294 ~v~~PaLRaiGNIvtG~d~-QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~-qiqaVida~l~p~Li~  371 (514)
T KOG0166|consen  294 KVVTPALRAIGNIVTGSDE-QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE-QIQAVIDANLIPVLIN  371 (514)
T ss_pred             ccccHHHhhccceeeccHH-HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH-HHHHHHHcccHHHHHH
Confidence            9999999999999988644 6778899999999999988 55666899999999999987643 1233456677777776


Q ss_pred             HHHhcCcccchHHH
Q 048113          313 EIDAEGDTVAGTTL  326 (339)
Q Consensus       313 ~~~~~~~~~~~~a~  326 (339)
                      .+....-+.+-+|.
T Consensus       372 ~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  372 LLQTAEFDIRKEAA  385 (514)
T ss_pred             HHhccchHHHHHHH
Confidence            66433333333343

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.95  E-value=2.1e-27  Score=204.43  Aligned_cols=314  Identities=18%  Similarity=0.252  Sum_probs=254.8

Q ss_pred             cHHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            2 EEMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         2 ~~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      .+.+|+.++ +...-.+.+|+|+|.|++.+   ..+.+++.|++|.++++|.+...++++.|.|+|+|++.+++..|..+
T Consensus       116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v  195 (526)
T COG5064         116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV  195 (526)
T ss_pred             cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH
Confidence            467888885 55667789999999999997   44556789999999999999999999999999999999888889999


Q ss_pred             hhcCChHHHHHhhcCCC--hhHHHHHHHHHHHHhcCc---cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           78 VKSGIVPVLLEVLQCQS--TTLIELTVAAMLILSSCL---ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      .+.|++.+++.++.+.-  ..+...+.|+|.||+...   +.-..|  +..+|.|.+++-+           .++++...
T Consensus       196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys-----------~D~evlvD  262 (526)
T COG5064         196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYS-----------RDPEVLVD  262 (526)
T ss_pred             HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhh-----------cCHHHHHH
Confidence            99999999999998764  478899999999999633   222222  4579999999988           89999999


Q ss_pred             HHHHHHhhcCCCC-ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113          153 AIATLHNLSTCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG  231 (339)
Q Consensus       153 a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~  231 (339)
                      |++++..|+..+. -...+.+.|..+.|+.+|...  +..++..++...+|.++.++.....+.+ .|+++.+-.+|.++
T Consensus       263 A~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~  339 (526)
T COG5064         263 ACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSSP  339 (526)
T ss_pred             HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcCh
Confidence            9999999998664 456778899999999999874  6889999999999655666666666676 99999999999998


Q ss_pred             ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhh----hhhHHH
Q 048113          232 SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ----LKNELV  307 (339)
Q Consensus       232 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~----~~~~~~  307 (339)
                      ...++..|||.+.|++..+.+ ..+.+++++.+|+|+.++...+-.++..|+|++.|...++.-  +.+.    +..+.+
T Consensus       340 ke~irKEaCWTiSNITAGnte-qiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~--~PD~iryLv~qG~I  416 (526)
T COG5064         340 KENIRKEACWTISNITAGNTE-QIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN--RPDIIRYLVSQGFI  416 (526)
T ss_pred             hhhhhhhhheeecccccCCHH-HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC--CchHHHHHHHccch
Confidence            889999999999999988654 678889999999999999999999999999999999887641  2221    222333


Q ss_pred             HHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          308 EQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       308 ~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      ..+-..+.+-.-++-+.|...+..+..
T Consensus       417 kpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         417 KPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             hHHHHHHhccCccchhhhHHHHHHHHh
Confidence            332222223334456667777766653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.93  E-value=7.3e-25  Score=188.86  Aligned_cols=277  Identities=18%  Similarity=0.240  Sum_probs=238.4

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCH--HHHHHHHHHHHHhccCC--cchh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDY--EAIEAALLSLLSLACGS--ERNK   74 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~A~~~L~~Ls~~~--~~~~   74 (339)
                      .+.++.+|.+++.+++..|+|+|.|++.+   +|+.+.+.|++.+++.++.++.+  .+.+++.|+|.|||.+.  +...
T Consensus       159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w  238 (526)
T COG5064         159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW  238 (526)
T ss_pred             hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence            36789999999999999999999999986   99999999999999999887644  78899999999999972  2333


Q ss_pred             hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                      ..+  ..++|.|.+++.+.++++...|+|++..|+..+ ++-..|.+.|..++|+.+|.+           .+..++..|
T Consensus       239 ~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-----------~sa~iqtPa  305 (526)
T COG5064         239 SNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-----------ESAKIQTPA  305 (526)
T ss_pred             HHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-----------ccccccCHH
Confidence            333  347899999999999999999999999999765 456778899999999999999           788899999


Q ss_pred             HHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113          154 IATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS  232 (339)
Q Consensus       154 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~  232 (339)
                      ++.+.|+.. ++.-...++.+|+++.+-.+|.++  .+.++..+|+++.|..+.+.+..+.+.+ ++.+|+|+++|...+
T Consensus       306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae  382 (526)
T COG5064         306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAE  382 (526)
T ss_pred             HHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHH
Confidence            999999977 455567788999999999999885  4689999999999777777788888887 999999999999988


Q ss_pred             hHHHHHHHHHHHHhhccC--chhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          233 PQCKEHAVAILLLICKSC--RDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       233 ~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      -.++..|||++.|.....  .++....+.+.|++.+|..++.-.+-++-+.++.++.++-+.++
T Consensus       383 ~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge  446 (526)
T COG5064         383 YKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE  446 (526)
T ss_pred             HHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence            899999999999997643  23455667889999999999998888888888999988876553

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.90  E-value=7.3e-21  Score=184.44  Aligned_cols=309  Identities=18%  Similarity=0.214  Sum_probs=239.1

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      -+.|++.|.+++.+....++.+|.+++..  ++..+.+.|+|++|++++++++.+++..+++.|.|||. ++..|..|++
T Consensus       292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~  370 (708)
T PF05804_consen  292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVS  370 (708)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence            36789999999999999999999999976  99999999999999999999999999999999999999 7999999999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .|++|.|+.+|.++  ..+..++.+|+++|.++++|..+...+++|.+++++-+.          ....+...++.++.|
T Consensus       371 ~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~----------~~~~v~~eliaL~iN  438 (708)
T PF05804_consen  371 LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN----------SEEEVQLELIALLIN  438 (708)
T ss_pred             CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC----------CCccccHHHHHHHHH
Confidence            99999999999865  466779999999999999999999999999999987663          345555567777778


Q ss_pred             hcCCCCChHHHHhcCcHHHHHHHh-------------------------------------hccccCchHHHHHHHHHHH
Q 048113          160 LSTCHQLISPIVSSGVTYCLLQLI-------------------------------------HSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       160 Ls~~~~~~~~i~~~g~i~~Lv~ll-------------------------------------~~~~~~~~~~~~a~~~L~n  202 (339)
                      ||.++.+.+.+++.|+++.|++..                                     ..+ ++++....|+++|+ 
T Consensus       439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~-~~ee~~vE~LGiLa-  516 (708)
T PF05804_consen  439 LALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG-DSEEFVVECLGILA-  516 (708)
T ss_pred             HhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHH-
Confidence            888777777777776666655432                                     222 24667788999999 


Q ss_pred             hhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC--CHHH
Q 048113          203 IVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG--TWRA  278 (339)
Q Consensus       203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~  278 (339)
                      |+...+.....++++.+.+|-|.++|..+  .+.+...++..+..+|.+  ++....+.+.|.++.|+++++..  +...
T Consensus       517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~  594 (708)
T PF05804_consen  517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEI  594 (708)
T ss_pred             hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence            67776667777777689999999999875  356777788888888866  44667778899999999998754  5666


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHH
Q 048113          279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLV  329 (339)
Q Consensus       279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l  329 (339)
                      ...-+.+...|-.+.+-  +...+....+...+-.+. -.+.+++..|-.+|
T Consensus       595 VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~L  644 (708)
T PF05804_consen  595 VLQILYVFYQLLFHEET--REVLLKETEIPAYLIDLMHDKNAEIRKVCDNAL  644 (708)
T ss_pred             HHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence            66666766666665542  222223233333222222 22355666555544

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.89  E-value=1.8e-21  Score=184.76  Aligned_cols=308  Identities=19%  Similarity=0.189  Sum_probs=245.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc--hhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER--NKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~~~i   77 (339)
                      +..+.+|.+.++.++..|+..+..++..   .+..+.+.|+|+.|+.+|.+...+++.+|+++|+||..++..  |+..|
T Consensus       236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai  315 (717)
T KOG1048|consen  236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAI  315 (717)
T ss_pred             HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence            3568899999999999999999999986   778888999999999999999999999999999999998665  99999


Q ss_pred             hhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH-HhcCCCCCCCCc--cCCCCHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE-ILNGDLADDDNS--YGRISVQAKIDA  153 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~--~~~~~~~~~~~a  153 (339)
                      .+.++|+.++++|.. .|.++++....+||||++++..|..|+... ++.|.. ++--.+.|++.+  ..-.+.++..++
T Consensus       316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~  394 (717)
T KOG1048|consen  316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV  394 (717)
T ss_pred             hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeeehh
Confidence            999999999999987 589999999999999999988888776554 555555 333344444433  223356778899


Q ss_pred             HHHHHhhcC-CCCChHHHHhc-CcHHHHHHHhhc----cccCchHHHHHHHHHHHhhcCCHh-----h------------
Q 048113          154 IATLHNLST-CHQLISPIVSS-GVTYCLLQLIHS----SEKSSGLTEKAIALLENIVSSSED-----A------------  210 (339)
Q Consensus       154 ~~~L~nLs~-~~~~~~~i~~~-g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~n~l~~~~~-----~------------  210 (339)
                      ..+|.|++. ..+.++.+.++ |.|+.|+..++.    +..+.+..++|+++|. |++..-+     .            
T Consensus       395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilR-NLSYrl~~Evp~~~~~~~~~~~~~~  473 (717)
T KOG1048|consen  395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILR-NLSYRLEAEVPPKYRQVLANIARLP  473 (717)
T ss_pred             hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHh-hcCchhhhhcCHhhhhHhhcccccc
Confidence            999999988 78999999998 999999988863    2235788999999999 6763211     0            


Q ss_pred             ---------------hHHHHh---------------------hCCcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCch-
Q 048113          211 ---------------LQEIAA---------------------TCGAIRALVETIE-EGSPQCKEHAVAILLLICKSCRD-  252 (339)
Q Consensus       211 ---------------~~~i~~---------------------~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~-  252 (339)
                                     +.+..+                     +..+|..=..+|. +.++.+.|.++++|.|++..... 
T Consensus       474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~  553 (717)
T KOG1048|consen  474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW  553 (717)
T ss_pred             cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence                           001000                     0001222233444 35688999999999999986532 


Q ss_pred             --hHHHHH-HhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          253 --KYRSSI-LKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       253 --~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                        ..+..+ .++.++|+|+++++.+++.+...++.+|+||+.+..   +++.+...++..++..+.
T Consensus       554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r---nk~ligk~a~~~lv~~Lp  616 (717)
T KOG1048|consen  554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR---NKELIGKYAIPDLVRCLP  616 (717)
T ss_pred             hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch---hhhhhhcchHHHHHHhCc
Confidence              355555 678999999999999999999999999999999875   778889999999999886

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=6.2e-21  Score=184.94  Aligned_cols=252  Identities=21%  Similarity=0.281  Sum_probs=209.6

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhc
Q 048113           53 YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILN  132 (339)
Q Consensus        53 ~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~  132 (339)
                      ..+...+...|.||+. ++.+...+.+.|+++.|+++|++++.++...++.+|.+||...+||..+.+.|++++|+++++
T Consensus       263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            3555678889999999 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhH
Q 048113          133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQ  212 (339)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~  212 (339)
                      +           ++.+.+..++++|.|||.+++.|..+++.|++|.|+.+|.++    ..+..|+.+|. +++..+++|.
T Consensus       342 s-----------~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy-~LS~dd~~r~  405 (708)
T PF05804_consen  342 S-----------ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILY-NLSMDDEARS  405 (708)
T ss_pred             C-----------CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHH-HhccCHhhHH
Confidence            9           789999999999999999999999999999999999999863    45677999999 8999999999


Q ss_pred             HHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          213 EIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       213 ~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .+.. .+++|.+++++-+ +++.+...++..+.|++.+.  .+.+.+.+.|+++.|++......+..   ...+++|++.
T Consensus       406 ~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~  479 (708)
T PF05804_consen  406 MFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ  479 (708)
T ss_pred             HHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence            9987 7899999997665 55667777888999999874  45688888899999999865544333   2358899998


Q ss_pred             cCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHHH
Q 048113          292 CSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLVE  330 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l~  330 (339)
                      +..   ..+....+.+.+++..+. .++++..-.+...|+
T Consensus       480 h~~---~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLa  516 (708)
T PF05804_consen  480 HDG---PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILA  516 (708)
T ss_pred             cCc---hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence            764   344455677777777764 233433333443333

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.87  E-value=5.1e-21  Score=188.98  Aligned_cols=264  Identities=19%  Similarity=0.211  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC------------CHHHHHHHHHHHHHhccCCcchhhHHhhc-C
Q 048113           17 QIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ------------DYEAIEAALLSLLSLACGSERNKIRIVKS-G   81 (339)
Q Consensus        17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~------------~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-g   81 (339)
                      .+.|+..|-.++.+  +|+.+.+.|+++.+.+++.-+            +..+|.+|.++|-||++++..|+..++.. |
T Consensus       315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            34788888888876  999999999999999987632            33689999999999999999999988865 9


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHh-cCccc-hHHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILS-SCLEN-KLEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~-~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .++.+|..|.+..+++....+.+|.||+ ..+.+ |..+.+.|.+..|+. .+++           ......+..+.+||
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~-----------~kEsTLKavLSALW  463 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN-----------KKESTLKAVLSALW  463 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh-----------cccchHHHHHHHHh
Confidence            9999999999999899998899999998 55555 777889999999988 4555           56678889999999


Q ss_pred             hhcC-CCCChHHHHhc-CcHHHHHHHhhcc--ccCchHHHHHHHHHHHhhc----CCHhhhHHHHhhCCcHHHHHHHhhc
Q 048113          159 NLST-CHQLISPIVSS-GVTYCLLQLIHSS--EKSSGLTEKAIALLENIVS----SSEDALQEIAATCGAIRALVETIEE  230 (339)
Q Consensus       159 nLs~-~~~~~~~i~~~-g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~----~~~~~~~~i~~~~g~i~~Lv~lL~~  230 (339)
                      ||+. ..+||..|++. |++..||.+|...  ...-.+++.+-++|. |++    .++..|+.+.+ .+++..|+++|++
T Consensus       464 NLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR-NVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS  541 (2195)
T KOG2122|consen  464 NLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR-NVSSLIATCEDYRQILRR-HNCLQTLLQHLKS  541 (2195)
T ss_pred             hhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH-HHHhHhhccchHHHHHHH-hhHHHHHHHHhhh
Confidence            9987 67999999998 9999999999764  234578888999999 443    45666666665 8999999999999


Q ss_pred             CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          231 GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       231 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      .+-.+..++|++||||+..++. .++.+++.|+++.|..++++....+-+-++.+|+||-.+.+
T Consensus       542 ~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  542 HSLTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             cceEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            9999999999999999998755 78999999999999999999999999999999999988774

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=7.4e-18  Score=145.56  Aligned_cols=305  Identities=17%  Similarity=0.228  Sum_probs=249.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113           11 NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE   88 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~   88 (339)
                      +++.....+++.+|..++... ..+.+..+...++.+|..  ++.++....++.+..-|..++.||+.+.+.++.|.+..
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q-pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~  196 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ-PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQ  196 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC-cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Confidence            567777888888887777652 234566777788887754  57788888888998888889999999999999999998


Q ss_pred             hhcCCCh-hHHHHHHHHHHHHhcCccchH----------HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           89 VLQCQST-TLIELTVAAMLILSSCLENKL----------EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        89 lL~~~~~-~~~~~a~~~L~nLs~~~~~~~----------~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      .|..... .+...+++++.-|..+++.|.          .|+..|+...|+..++-.          -++++...++.+|
T Consensus       197 ~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~----------~dp~~L~~l~~tl  266 (461)
T KOG4199|consen  197 VLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG----------IDPDSLVSLSTTL  266 (461)
T ss_pred             HHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc----------CCccHHHHHHHHH
Confidence            8876644 478888899999998877653          466778899999999886          5799999999999


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhccccC--chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc--CCh
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS--SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE--GSP  233 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~  233 (339)
                      ..|+..++.++.|.+.|+++.|+.++.++..+  ..+...|+..|. -++.++.++..|++ .|+.+.++.++..  ++|
T Consensus       267 ~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLr-alAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p  344 (461)
T KOG4199|consen  267 KALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLR-ALAGSDSVKSTIVE-KGGLDKIITLALRHSDDP  344 (461)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHH-HHhCCCchHHHHHH-hcChHHHHHHHHHcCCCh
Confidence            99999999999999999999999999885321  235577889999 89999999999998 8999999997753  679


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC--HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHH
Q 048113          234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT--WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIM  311 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~  311 (339)
                      .+-+.++.+++-+|...++ ....+++.|+-..-++-++...  ..+|++|+++++|+...+..  +++..-..+++.++
T Consensus       345 ~Vi~~~~a~i~~l~LR~pd-hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~~GiE~Li  421 (461)
T KOG4199|consen  345 LVIQEVMAIISILCLRSPD-HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLANGIEKLI  421 (461)
T ss_pred             HHHHHHHHHHHHHHhcCcc-hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHhccHHHHH
Confidence            9999999999999988766 5667788887777777666543  55789999999999875543  56677788899999


Q ss_pred             HHHHhcCcccchHHHHHHHH
Q 048113          312 QEIDAEGDTVAGTTLRLVEE  331 (339)
Q Consensus       312 ~~~~~~~~~~~~~a~~~l~~  331 (339)
                      +.-..+++..+..|...|.+
T Consensus       422 ~~A~~~h~tce~~akaALRD  441 (461)
T KOG4199|consen  422 RTAKANHETCEAAAKAALRD  441 (461)
T ss_pred             HHHHhcCccHHHHHHHHHHh
Confidence            88888888888877777654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=6.9e-16  Score=133.48  Aligned_cols=279  Identities=16%  Similarity=0.172  Sum_probs=227.3

Q ss_pred             HHHHHHc--CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcc-----
Q 048113            4 MLMDNLL--NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSER-----   72 (339)
Q Consensus         4 ~Lv~~L~--s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~-----   72 (339)
                      .++++|.  +++.++.......++.-+..   +|+.|.+.++.+.+...|.. +...+.+.+.++++.|..+ ++     
T Consensus       149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~f  227 (461)
T KOG4199|consen  149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVF  227 (461)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-Cceeeec
Confidence            4566664  56777788888888887654   99999999999999976654 4556888899999999983 43     


Q ss_pred             -----hhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113           73 -----NKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS  146 (339)
Q Consensus        73 -----~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~  146 (339)
                           +...|++.|+...|+..++.. +|.....++.+|..|+-.++.+..|.+.|++..|++.+.+.+.+       ++
T Consensus       228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~-------~~  300 (461)
T KOG4199|consen  228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQ-------GN  300 (461)
T ss_pred             chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchh-------hH
Confidence                 345677888999999998765 68888889999999999888889999999999999999874211       23


Q ss_pred             HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113          147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE  226 (339)
Q Consensus       147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~  226 (339)
                      ....+.++..|..|+.++.++..|++.|+.+.++.++....+++.+.+.++.+++-++-..|++...+++ .|+-...++
T Consensus       301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avq  379 (461)
T KOG4199|consen  301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQ  379 (461)
T ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHH
Confidence            3455678999999999999999999999999999999887778888999998888444567888888887 899999999


Q ss_pred             HhhcC--ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          227 TIEEG--SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       227 lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      .++..  ...+|.++++.+.|+...+.+ +++.++. .++..|+...+...+.....|..+|+-|-.+.
T Consensus       380 AmkahP~~a~vQrnac~~IRNiv~rs~~-~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~v  446 (461)
T KOG4199|consen  380 AMKAHPVAAQVQRNACNMIRNIVVRSAE-NRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCDV  446 (461)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHhhhh-ccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence            99853  367899999999999988654 6665554 56888888888888888888888999886544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.71  E-value=2.4e-15  Score=130.29  Aligned_cols=196  Identities=19%  Similarity=0.182  Sum_probs=170.5

Q ss_pred             HhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc
Q 048113           36 VERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN  114 (339)
Q Consensus        36 ~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~  114 (339)
                      .+.+-++.|+.+|+. .+|.+++.|+.++.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            566778999999985 589999999999999999 799999999999999999999999999999999999999999998


Q ss_pred             hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113          115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      +..|..  .++.+++...+..         -+..++..++++|.||+..++.+..+..  .++.++.+|..+  +..++.
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~---------lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G--~~~~k~  152 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSP---------LNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSG--SEKTKV  152 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCC---------CCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcC--ChHHHH
Confidence            887743  5777777655521         4788999999999999988877777644  799999999986  578999


Q ss_pred             HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhcc
Q 048113          195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKS  249 (339)
Q Consensus       195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~  249 (339)
                      +++.+|. +++.++...+.+.. +++...++.+++.. +.++...++....|+...
T Consensus       153 ~vLk~L~-nLS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  153 QVLKVLV-NLSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHH-HhccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999999 89999999999987 89999999999875 577788888888998654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=9.1e-16  Score=146.30  Aligned_cols=277  Identities=21%  Similarity=0.202  Sum_probs=209.3

Q ss_pred             ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc---CccchH
Q 048113           40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS---CLENKL  116 (339)
Q Consensus        40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~---~~~~~~  116 (339)
                      -+|..+.+|.+.++.+|.+|+.-+.++|+++.+.|..+.+.|+|+.||.+|.+...+++..|+++|.||..   +++++-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            46778999999999999999999999999999999999999999999999999999999999999999996   335789


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccc--------c
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSE--------K  188 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~--------~  188 (339)
                      .|.+.++|+.++++++..          .|.++++....+||||++++..+..++.. +++.|.+-+-.+.        +
T Consensus       314 ai~~~~Gv~~l~~~Lr~t----------~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~  382 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHT----------QDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAP  382 (717)
T ss_pred             hhhhcCChHHHHHHHHhh----------cchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcc
Confidence            999999999999999875          79999999999999999997777766554 4666665553321        1


Q ss_pred             ----CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc------CChHHHHHHHHHHHHhhccCc-------
Q 048113          189 ----SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE------GSPQCKEHAVAILLLICKSCR-------  251 (339)
Q Consensus       189 ----~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~-------  251 (339)
                          ...+..++.++|.|..+...+.|+++.+..|.|+.|+..+++      .+.+..|+++.+|.|++-.-.       
T Consensus       383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~  462 (717)
T KOG1048|consen  383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKY  462 (717)
T ss_pred             cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhh
Confidence                256778999999965556899999999888999999999974      356778999999999863211       


Q ss_pred             ------------------------hhHHHH---------------------HHhcCChHHHHHh-hhcCCHHHHHHHHHH
Q 048113          252 ------------------------DKYRSS---------------------ILKEGVMPGLLQL-SVDGTWRAKNMARDL  285 (339)
Q Consensus       252 ------------------------~~~~~~---------------------~~~~g~i~~L~~l-l~~~~~~~~~~A~~~  285 (339)
                                              .+-++.                     ++.-.++.+=..+ -.+.++.+.+.++++
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGa  542 (717)
T KOG1048|consen  463 RQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGA  542 (717)
T ss_pred             hhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence                                    011110                     0000122221222 245678889999999


Q ss_pred             HHHHhccCCCcchhhh------hhhHHHHHHHHHHHhcCcccchHHHHHH
Q 048113          286 LLLLRDCSSFGSRSKQ------LKNELVEQIMQEIDAEGDTVAGTTLRLV  329 (339)
Q Consensus       286 L~~l~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~a~~~l  329 (339)
                      |+|++-+.+-  -...      .+..++..++..+..+++++-..+..+|
T Consensus       543 LQNltA~~~~--~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~L  590 (717)
T KOG1048|consen  543 LQNLTAGLWT--WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGAL  590 (717)
T ss_pred             HhhhhccCCc--chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHH
Confidence            9999876542  1111      3455667777777777766654444443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.69  E-value=8.1e-15  Score=130.64  Aligned_cols=324  Identities=14%  Similarity=0.116  Sum_probs=246.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccC-------CHHHHHHHHHHHHHhccCCcc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQ-------DYEAIEAALLSLLSLACGSER   72 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~~   72 (339)
                      |.|.....|.+.++-....++|+|++.+   +|..+.+.|+-..++..|+..       +.+....+...|.|...+++.
T Consensus        90 e~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~  169 (604)
T KOG4500|consen   90 ELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRE  169 (604)
T ss_pred             HHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHH
Confidence            4566667788889999999999999986   999999999977777777652       336777788899999998889


Q ss_pred             hhhHHhhcCChHHHHHhhcC--CC--------------------------------------------hhHHHHHHHHHH
Q 048113           73 NKIRIVKSGIVPVLLEVLQC--QS--------------------------------------------TTLIELTVAAML  106 (339)
Q Consensus        73 ~~~~i~~~g~i~~Lv~lL~~--~~--------------------------------------------~~~~~~a~~~L~  106 (339)
                      .+....+.|+++.|...+.=  .+                                            +++.+.....+.
T Consensus       170 l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila  249 (604)
T KOG4500|consen  170 LRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILA  249 (604)
T ss_pred             HHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHH
Confidence            99999999999988765521  11                                            234555566666


Q ss_pred             HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC-cHHHHHHHhhc
Q 048113          107 ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG-VTYCLLQLIHS  185 (339)
Q Consensus       107 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g-~i~~Lv~ll~~  185 (339)
                      ..+.++..+-.+++.|.++.++.++++..+.   ...++.......++....-|...++.-..+...| +++.++..+.+
T Consensus       250 ~~aend~Vkl~la~~gl~e~~~~lv~~~k~~---t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S  326 (604)
T KOG4500|consen  250 KAAENDLVKLSLAQNGLLEDSIDLVRNMKDF---TKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS  326 (604)
T ss_pred             HHhcCcceeeehhhcchHHHHHHHHHhcccc---cchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence            6677777777777888899999888873110   0001122233344444455555666666676666 88888888887


Q ss_pred             cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-----CChHHHHHHHHHHHHhhccCchhHHHHHHh
Q 048113          186 SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-----GSPQCKEHAVAILLLICKSCRDKYRSSILK  260 (339)
Q Consensus       186 ~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  260 (339)
                      +  +.+++..+.-+++ |+++.+.+...+++ .|.+..|++.+..     ++.+.+..++.+|+|+...-+  .+..+..
T Consensus       327 ~--d~~l~t~g~Laig-NfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~  400 (604)
T KOG4500|consen  327 D--DSNLITMGSLAIG-NFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAP  400 (604)
T ss_pred             C--chhHHHHHHHHHH-hhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccc
Confidence            5  4677888888899 78999998889997 7999999997753     568899999999999997643  5788999


Q ss_pred             cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHHHHHHHH
Q 048113          261 EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLVEEMIAK  335 (339)
Q Consensus       261 ~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l~~~v~~  335 (339)
                      +|+.+.+..+++...|+++.+-.+.++++.+..+|..-.-.-..+.+++++.+.. .|-..+.++-.|++.++|+-
T Consensus       401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH  476 (604)
T KOG4500|consen  401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH  476 (604)
T ss_pred             cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence            9999999999999999999999999999998765422121223578888888876 45577888899999999864

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.69  E-value=4.5e-15  Score=128.62  Aligned_cols=185  Identities=21%  Similarity=0.216  Sum_probs=162.1

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+.+|+ +.+|.++..|..++.+.+..  ++..+.+.|+++.+..+|+++++.++..|+++|.|++. +.+|+..+-.
T Consensus        15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~~Ik~   93 (254)
T PF04826_consen   15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-NDENQEQIKM   93 (254)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHHHHHH
Confidence            46788888 57999999999999999876  99999999999999999999999999999999999999 7888887743


Q ss_pred             cCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                        .++.+++.+.+.  +..++..++++|.||+..++.+..+..  .++.++.+|..           ++..++..++++|
T Consensus        94 --~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~-----------G~~~~k~~vLk~L  158 (254)
T PF04826_consen   94 --YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSS-----------GSEKTKVQVLKVL  158 (254)
T ss_pred             --HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHc-----------CChHHHHHHHHHH
Confidence              577777755443  567899999999999988887777744  79999999999           8999999999999


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS  205 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~  205 (339)
                      .|||.++.+.+.+..+.++..++.++.+.. +.++...++..+. ++.
T Consensus       159 ~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~-~~~~l~~~l~~~~-ni~  204 (254)
T PF04826_consen  159 VNLSENPDMTRELLSAQVLSSFLSLFNSSE-SKENLLRVLTFFE-NIN  204 (254)
T ss_pred             HHhccCHHHHHHHHhccchhHHHHHHccCC-ccHHHHHHHHHHH-HHH
Confidence            999999999999999999999999998863 5788888888888 453

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.68  E-value=9.4e-14  Score=133.14  Aligned_cols=274  Identities=18%  Similarity=0.212  Sum_probs=219.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|...|.++++.+|..+++.|+++..+   ....+.+.++++.++..+.+++.++...|+.+|..++. .+.....++.
T Consensus        80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~  158 (503)
T PF10508_consen   80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFD  158 (503)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhC
Confidence            5678888999999999999999999875   45667789999999999999999999999999999999 5777788889


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .+.++.|..++..+++.+|..+..++.+++.. ++....+.+.|.++.+++-+++           +|.-++.+++.+|.
T Consensus       159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-----------dDiLvqlnalell~  227 (503)
T PF10508_consen  159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-----------DDILVQLNALELLS  227 (503)
T ss_pred             cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-----------ccHHHHHHHHHHHH
Confidence            99999999999998889999999999999864 4557777789999999999999           89999999999999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhccccCc---hHH-HHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSS---GLT-EKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSP  233 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~---~~~-~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~  233 (339)
                      .|+..+.+...+.+.|+++.|..++.+...++   .+. -..+...+ +++. .+......  ...++..+.+++.+.++
T Consensus       228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g-~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~  304 (503)
T PF10508_consen  228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG-NLARVSPQEVLEL--YPAFLERLFSMLESQDP  304 (503)
T ss_pred             HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH-HHHhcChHHHHHH--HHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999997753322   222 22224555 4444 33322111  13456667777788889


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHH-Hh-cCChHH----HHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          234 QCKEHAVAILLLICKSCRDKYRSSI-LK-EGVMPG----LLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~~~~~~~~-~~-~g~i~~----L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ..+..|..++..++..  .+++..+ .. .+.++.    ......+++.++|.++..++.++-...
T Consensus       305 ~~~~~A~dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~  368 (503)
T PF10508_consen  305 TIREVAFDTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG  368 (503)
T ss_pred             hHHHHHHHHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence            9999999999999966  4567777 43 334444    444456678889999999999996544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.65  E-value=3e-13  Score=129.68  Aligned_cols=310  Identities=16%  Similarity=0.195  Sum_probs=238.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +.++..|.+.+.+....++.+|..+... ....+ ..+..+.|...|.++++.++..+++.+.++..+++.....+.+.+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            4467778888888888899999998887 33333 667778888999999999999999999999996555566777889


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      .++.++.++.+++.++...|..+|.+++..+.....+.+.+.++.|.+++.+           .+..+|..+..++.+++
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~-----------~~~~vR~Rv~el~v~i~  188 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ-----------SSDIVRCRVYELLVEIA  188 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc-----------cCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877778888889999999988           67888889999999998


Q ss_pred             C-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC--hHH---
Q 048113          162 T-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS--PQC---  235 (339)
Q Consensus       162 ~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~---  235 (339)
                      . +++....+.+.|+++.+++.+++.  +.-++.+|+.+|. .++..+.+...+.+ .|+++.|++++.+.+  +..   
T Consensus       189 ~~S~~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~-~La~~~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~  264 (503)
T PF10508_consen  189 SHSPEAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLS-ELAETPHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSL  264 (503)
T ss_pred             hcCHHHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHH-HHHcChhHHHHHHh-CCHHHHHHHHHhccccCCcccch
Confidence            7 566677778889999999999983  5778889999999 78889999999987 899999999998642  301   


Q ss_pred             H-HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhh-h---hhHHHHHH
Q 048113          236 K-EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ-L---KNELVEQI  310 (339)
Q Consensus       236 ~-~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~-~---~~~~~~~i  310 (339)
                      . -.......+++..++.......  -..+..|.+++.+.++..+..|..++..++...    .++. +   ..+.+...
T Consensus       265 ~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~----~G~~~L~~~~~~~~~~~  338 (503)
T PF10508_consen  265 LLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV----EGKQLLLQKQGPAMKHV  338 (503)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH----HHHHHHHhhcchHHHHH
Confidence            1 1112344555554333221111  234555666677889999999999999998765    2332 2   23455566


Q ss_pred             HHHHH---hcC-cccchHHHHHHHHHHH
Q 048113          311 MQEID---AEG-DTVAGTTLRLVEEMIA  334 (339)
Q Consensus       311 ~~~~~---~~~-~~~~~~a~~~l~~~v~  334 (339)
                      +..+.   ..| .+++-.+...++++..
T Consensus       339 l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  339 LKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            66664   223 4667778888887754

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.56  E-value=2.7e-13  Score=135.29  Aligned_cols=316  Identities=18%  Similarity=0.175  Sum_probs=229.8

Q ss_pred             HHHHHHc---CCCHHHHHHHHHHHHHHHHH------HHHHHHhcCChHHHHHHhc-------cC--------CHHHHHHH
Q 048113            4 MLMDNLL---NGERETQIQAANELGKLSRR------QKHKLVERGIIAPLISMLC-------SQ--------DYEAIEAA   59 (339)
Q Consensus         4 ~Lv~~L~---s~~~~~~~~a~~~L~~l~~~------~~~~i~~~g~i~~Lv~lL~-------~~--------~~~~~~~A   59 (339)
                      .|+.+|.   .++.+.+..|-.+|.|+...      .|+.+--.-++..+..++.       ..        +..-...|
T Consensus       239 LLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA  318 (2195)
T KOG2122|consen  239 LLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAA  318 (2195)
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHH
Confidence            5677775   23557889999999999864      3333332333333322221       11        22233478


Q ss_pred             HHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC------------ChhHHHHHHHHHHHHhcCc-cchHHHH-hcchHH
Q 048113           60 LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ------------STTLIELTVAAMLILSSCL-ENKLEIA-SSGAIQ  125 (339)
Q Consensus        60 ~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~nLs~~~-~~~~~i~-~~g~i~  125 (339)
                      +.+|..+++ ++++|..|.+.|++.++-.++.-.            ...++.++..+|-||...+ .+|..+. ..|+++
T Consensus       319 ~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMe  397 (2195)
T KOG2122|consen  319 LCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFME  397 (2195)
T ss_pred             HHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHH
Confidence            899999999 799999999999999998877421            1358999999999999866 4577666 568999


Q ss_pred             HHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh
Q 048113          126 RLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI  203 (339)
Q Consensus       126 ~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~  203 (339)
                      .+|..|.+           ...++..-.+.+|.||+=  +...++.+.+.|-+..|+..--.. ..+..+...+.+|+|+
T Consensus       398 avVAQL~s-----------~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~-~kEsTLKavLSALWNL  465 (2195)
T KOG2122|consen  398 AVVAQLIS-----------APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN-KKESTLKAVLSALWNL  465 (2195)
T ss_pred             HHHHHHhc-----------ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh-cccchHHHHHHHHhhh
Confidence            99999988           677888889999999986  445577788889999999875443 2456688889999965


Q ss_pred             hcCCHhhhHHHHhhCCcHHHHHHHhhcC----ChHHHHHHHHHHHHhhccC--chhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113          204 VSSSEDALQEIAATCGAIRALVETIEEG----SPQCKEHAVAILLLICKSC--RDKYRSSILKEGVMPGLLQLSVDGTWR  277 (339)
Q Consensus       204 l~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~  277 (339)
                      -+.+.+|+..|....|++.-||.+|.-.    .-.+.+.+-++|.|.+..-  .+.+|+.+.+...+..|++.+++.+-.
T Consensus       466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLT  545 (2195)
T KOG2122|consen  466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLT  545 (2195)
T ss_pred             hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceE
Confidence            5667899999998889999999999743    4578899999998875421  134888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113          278 AKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       278 ~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v  333 (339)
                      +..++++.||||+--+..- |.-..++..+..+-..|-..+..++..+...|.+++
T Consensus       546 iVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  546 IVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             EeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            9999999999998644321 222334444444444443555555555445555544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=6.7e-12  Score=113.68  Aligned_cols=285  Identities=18%  Similarity=0.218  Sum_probs=218.9

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      ..+||+-|.-++.+........|..++..  ++..+.+.|+|..|+++....+++++...++.|.||+. +...|..++.
T Consensus       306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~  384 (791)
T KOG1222|consen  306 VAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVN  384 (791)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc-cccccHHHhh
Confidence            35688888888888899999999999986  99999999999999999999999999999999999999 7899999999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCC-C---------------Cc--
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADD-D---------------NS--  141 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~---------------~~--  141 (339)
                      .|.+|.|..+|.+..  -..-|+..++.+|.++..|..+.-.++|+.+.+.+-..++.. +               |.  
T Consensus       385 ~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQl  462 (791)
T KOG1222|consen  385 GGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQL  462 (791)
T ss_pred             ccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceE
Confidence            999999999998864  234566788888888888887777778887777554432111 1               00  


Q ss_pred             ---------------------------------------------------cCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113          142 ---------------------------------------------------YGRISVQAKIDAIATLHNLSTCHQLISPI  170 (339)
Q Consensus       142 ---------------------------------------------------~~~~~~~~~~~a~~~L~nLs~~~~~~~~i  170 (339)
                                                                         ...++..+...++.+|.||...+-.-..+
T Consensus       463 vceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i  542 (791)
T KOG1222|consen  463 VCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI  542 (791)
T ss_pred             EecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence                                                               23345567778889999998766555555


Q ss_pred             Hh-cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhh
Q 048113          171 VS-SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLIC  247 (339)
Q Consensus       171 ~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~  247 (339)
                      .+ ...||-+-..|+.+-...+++...+-+++ -++.+..+..-+.. +|.|+.++++|+..  +.+..-+.+.+...+.
T Consensus       543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~G-T~a~d~~cA~Lla~-a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l  620 (791)
T KOG1222|consen  543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACG-TMARDLDCARLLAP-AKLIDTLIELLQACQEDDEFVVQIIYVFLQFL  620 (791)
T ss_pred             HhhccccHHHHHhhcCCccchhhhhHHHHHhh-hhhhhhHHHHHhCc-cccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence            44 48899999888876555666666666667 56666655555554 89999999999863  4555556667777776


Q ss_pred             ccCchhHHHHHHhcC-ChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          248 KSCRDKYRSSILKEG-VMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       248 ~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ..  +..|..++++. .-..|+.++++.+..+++-+-.+|..++.+.
T Consensus       621 ~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d  665 (791)
T KOG1222|consen  621 KH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD  665 (791)
T ss_pred             HH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence            66  33567777654 4455899999999999888777888877654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.51  E-value=7.1e-12  Score=112.11  Aligned_cols=311  Identities=11%  Similarity=0.105  Sum_probs=227.2

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHH----HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR--QKHKL----VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i----~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      ........+..++..+..++...++.  .|..|    +..|.++.|.+..+|++.++-.+..++|+|.|+.+.++|..+.
T Consensus        47 ~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~  126 (604)
T KOG4500|consen   47 QASGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFF  126 (604)
T ss_pred             HhcceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHH
Confidence            33334445666777778888888775  33333    5577888888888899999999999999999999999999999


Q ss_pred             hcCChHHHHHhhcCC-------ChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCC----C-------
Q 048113           79 KSGIVPVLLEVLQCQ-------STTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADD----D-------  139 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~----~-------  139 (339)
                      +.||-..++++|+.-       +.+....+.+.|.|...+. +.+..+++.|.++.|...+.-+  |.    .       
T Consensus       127 ~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~--~qNaa~~e~ll~~f  204 (604)
T KOG4500|consen  127 NLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWID--WQNAALTEKLLAPF  204 (604)
T ss_pred             hcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcc--cccHHHHHHHHhcc
Confidence            999988888877542       2356777888999988654 4588899999999998877542  21    0       


Q ss_pred             Cc--------------------------cCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC----
Q 048113          140 NS--------------------------YGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS----  189 (339)
Q Consensus       140 ~~--------------------------~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~----  189 (339)
                      ++                          -++-.++..+-....|...+.++..+-.+.+.|.+..+.++++.....    
T Consensus       205 ~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~  284 (604)
T KOG4500|consen  205 FNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKT  284 (604)
T ss_pred             ccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchH
Confidence            00                          122345566667788888888999999999999999999998773211    


Q ss_pred             --chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH
Q 048113          190 --SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL  267 (339)
Q Consensus       190 --~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L  267 (339)
                        -.....++.... .+...++.-+.+-.+..+++.++.-+.+++...+..+.-++.|+++.+  ..+..+.+.|.+..|
T Consensus       285 d~~~l~k~~~el~v-llltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL  361 (604)
T KOG4500|consen  285 DMLNLFKRIAELDV-LLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKL  361 (604)
T ss_pred             HHHHHHHhhhhHhh-hhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHH
Confidence              112233444444 455556666666553338889999999988889999999999999885  467888999999999


Q ss_pred             HHhhhc-----CCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccc
Q 048113          268 LQLSVD-----GTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVA  322 (339)
Q Consensus       268 ~~ll~~-----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  322 (339)
                      ++.+-.     ++-..+..++.+|+||.-.-.  +.....+.+..+.|+....++..++-
T Consensus       362 ~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~aGvteaIL~~lk~~~ppv~  419 (604)
T KOG4500|consen  362 ISCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAPAGVTEAILLQLKLASPPVT  419 (604)
T ss_pred             HHHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccccchHHHHHHHHHhcCCcch
Confidence            988643     566778889999999976443  12334456666777766666666653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=4.6e-13  Score=103.36  Aligned_cols=118  Identities=25%  Similarity=0.434  Sum_probs=108.8

Q ss_pred             HHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc
Q 048113           34 KLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE  113 (339)
Q Consensus        34 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  113 (339)
                      .+.+.|+++.+++++.++++.++..|+++|.+++.+++..+..+.+.|++|.++.++.++++.++..++++|.|++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            46789999999999999999999999999999999778999999999999999999999999999999999999998764


Q ss_pred             -chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113          114 -NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus       114 -~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                       .+..+.+.|+++.|+++++.           .+..++..++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~-----------~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDS-----------SNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhc-----------CCHHHHHHHHHHHHHhhC
Confidence             46667789999999999998           789999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=6.3e-12  Score=113.87  Aligned_cols=238  Identities=18%  Similarity=0.242  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113           54 EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG  133 (339)
Q Consensus        54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~  133 (339)
                      .+...|...|.|++. +-.....+.....+..||+.|+.++.++.......|..||...++|..+.+.|.+++|++++..
T Consensus       278 qLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~  356 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI  356 (791)
T ss_pred             HHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence            455678888999999 6888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHH
Q 048113          134 DLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQE  213 (339)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~  213 (339)
                                 .+++.+...+..|.|+|.+..++..++..|.+|.|+.++.+.    .-...|+.+|. .++.++..+..
T Consensus       357 -----------~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d----~~~~iA~~~lY-h~S~dD~~K~M  420 (791)
T KOG1222|consen  357 -----------QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD----TKHGIALNMLY-HLSCDDDAKAM  420 (791)
T ss_pred             -----------CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc----ccchhhhhhhh-hhccCcHHHHH
Confidence                       899999999999999999999999999999999999999874    22445888899 89999999988


Q ss_pred             HHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh-hhcCCHHHHHHHHHHHHHHhc
Q 048113          214 IAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL-SVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       214 i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~A~~~L~~l~~  291 (339)
                      +.. .++|+.+.+.+-++ +.++....+....|+|....+  .+.+.+..++..|++. ++..++-.    ...+++++.
T Consensus       421 fay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN--aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSq  493 (791)
T KOG1222|consen  421 FAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN--AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQ  493 (791)
T ss_pred             HHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc--ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhh
Confidence            886 79999999865543 455555555556788876433  4566777789999887 44443332    346778876


Q ss_pred             cCCCcchhhhhhhHHHHHHHHHHHhcC
Q 048113          292 CSSFGSRSKQLKNELVEQIMQEIDAEG  318 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~  318 (339)
                      +..   ..+.+.-+-+..+...+..+.
T Consensus       494 Heg---~tqn~FidyvgdLa~i~~nd~  517 (791)
T KOG1222|consen  494 HEG---ATQNMFIDYVGDLAGIAKNDN  517 (791)
T ss_pred             ccc---hHHHHHHHHHHHHHHHhhcCc
Confidence            543   345566667777776666544

>PRK09687 putative lyase; Provisional

Probab=99.43  E-value=4.8e-11  Score=105.72  Aligned_cols=224  Identities=14%  Similarity=0.085  Sum_probs=169.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.|+..|.+.+..+|..|+..|..+-        +..+++.+..+++++++.+|..|+++|+.|... +..     ...+
T Consensus        26 ~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~-----~~~a   91 (280)
T PRK09687         26 DELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMA-KRC-----QDNV   91 (280)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----hHHH
Confidence            57889999999999999999997654        466778888899999999999999999999762 221     2245


Q ss_pred             hHHHHHh-hcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           83 VPVLLEV-LQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        83 i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      ++.|..+ ++++++.++..|+.+|.++.......    ...+++.+...+.+           .++.++..++.+|..+.
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D-----------~~~~VR~~a~~aLg~~~  156 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD-----------KSTNVRFAVAFALSVIN  156 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC-----------CCHHHHHHHHHHHhccC
Confidence            6788877 56778999999999999986433211    12256667777777           78899999999997653


Q ss_pred             CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                      .          ..+++.|+.++.+.  +..++..|+.+|+ .+...         ...+++.|+..|.+.++.++..|+.
T Consensus       157 ~----------~~ai~~L~~~L~d~--~~~VR~~A~~aLg-~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~  214 (280)
T PRK09687        157 D----------EAAIPLLINLLKDP--NGDVRNWAAFALN-SNKYD---------NPDIREAFVAMLQDKNEEIRIEAII  214 (280)
T ss_pred             C----------HHHHHHHHHHhcCC--CHHHHHHHHHHHh-cCCCC---------CHHHHHHHHHHhcCCChHHHHHHHH
Confidence            1          23788999999875  4689999999999 44221         1356788999999999999999999


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      +|..+-.   .         .++|.|++.+.+++  ++..|+.+|..+..
T Consensus       215 aLg~~~~---~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        215 GLALRKD---K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHccCC---h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence            9887531   1         26899999988876  45667777666643

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.41  E-value=8.8e-11  Score=108.40  Aligned_cols=275  Identities=15%  Similarity=0.076  Sum_probs=201.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHH--HHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR-QKH--KLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~--~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +++.+|..+|..+...|+..|..+... ...  .....-....+...+++. +...+..|+.+|..|.. .+..|..+.+
T Consensus       105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~  183 (429)
T cd00256         105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVL  183 (429)
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHH
Confidence            466788889999999999999998764 111  000111334566666654 56788889999999999 6999999999


Q ss_pred             cCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      .++++.|+.+|...  +.+++-+++.++|-|+..++........+.|+.|+++++..          ...++..-++.+|
T Consensus       184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s----------~KEKvvRv~l~~l  253 (429)
T cd00256         184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES----------TKEKVIRIVLAIF  253 (429)
T ss_pred             ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh----------hhHHHHHHHHHHH
Confidence            99999999999764  45788899999999999887766666789999999999884          6788999999999


Q ss_pred             HhhcCCC-------CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh-------hc---------------CC-
Q 048113          158 HNLSTCH-------QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI-------VS---------------SS-  207 (339)
Q Consensus       158 ~nLs~~~-------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~-------l~---------------~~-  207 (339)
                      .||...+       .....+++.|..+.+-.+......++++.+. +..|...       ++               .+ 
T Consensus       254 ~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp  332 (429)
T cd00256         254 RNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP  332 (429)
T ss_pred             HHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC
Confidence            9997632       2235677777766555555444334554432 1111111       12               11 


Q ss_pred             --------HhhhHHHHhh-CCcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113          208 --------EDALQEIAAT-CGAIRALVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR  277 (339)
Q Consensus       208 --------~~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  277 (339)
                              .+|..++-+. ...+..|+++|+ +.++.+..-||.=+..++...|. +|..+.+-|+=..+++++.+.++.
T Consensus       333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~  411 (429)
T cd00256         333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPN  411 (429)
T ss_pred             CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHH
Confidence                    2333344331 224688999995 45677778888888999988765 788888899999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 048113          278 AKNMARDLLLLLRD  291 (339)
Q Consensus       278 ~~~~A~~~L~~l~~  291 (339)
                      ++..|..+++-|--
T Consensus       412 Vr~eAL~avQklm~  425 (429)
T cd00256         412 VRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987643

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.39  E-value=1.7e-11  Score=94.52  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=104.3

Q ss_pred             HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                      .+++.|+++.++++++++  +..++..++.+|+ +++.. ++.+..+.+ .|+++.+++++.++++.++..++++|.+++
T Consensus         2 ~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~l~-~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~   77 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS--DENVQREAAWALS-NLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLA   77 (120)
T ss_pred             hHHHcCChHHHHHHHHcC--CHHHHHHHHHHHH-HHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence            467889999999999975  4789999999999 45554 888888887 799999999999999999999999999999


Q ss_pred             ccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113          248 KSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       248 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      ...+. .+..+.+.|+++.|++++.+.+..+++.|+++|.+|+
T Consensus        78 ~~~~~-~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          78 AGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             cCcHH-HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            87643 6777888999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.36  E-value=6e-11  Score=105.10  Aligned_cols=220  Identities=13%  Similarity=0.069  Sum_probs=168.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISM-LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +.+..++.++++.+|..|+++|..+-...+.   ....++.|..+ ++++++.++..|+.+|++++.. ....    ...
T Consensus        57 ~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~~----~~~  128 (280)
T PRK09687         57 RLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLALEDKSACVRASAINATGHRCKK-NPLY----SPK  128 (280)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cccc----chH
Confidence            3466778899999999999999887532100   12356777776 6778999999999999999763 2111    122


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      +++.+...+.++++.++..++.+|.++.          ...+++.|+.++.+           .++.++..|+.+|..+.
T Consensus       129 a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d-----------~~~~VR~~A~~aLg~~~  187 (280)
T PRK09687        129 IVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKD-----------PNGDVRNWAAFALNSNK  187 (280)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcC-----------CCHHHHHHHHHHHhcCC
Confidence            4566777888889999999999996542          33479999999998           78899999999999984


Q ss_pred             CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                      ..++        .+++.|+..+.+.  +..++..|..+|+ .+          . +..+++.|++.|++++  ++..++.
T Consensus       188 ~~~~--------~~~~~L~~~L~D~--~~~VR~~A~~aLg-~~----------~-~~~av~~Li~~L~~~~--~~~~a~~  243 (280)
T PRK09687        188 YDNP--------DIREAFVAMLQDK--NEEIRIEAIIGLA-LR----------K-DKRVLSVLIKELKKGT--VGDLIIE  243 (280)
T ss_pred             CCCH--------HHHHHHHHHhcCC--ChHHHHHHHHHHH-cc----------C-ChhHHHHHHHHHcCCc--hHHHHHH
Confidence            3222        4678899999875  5799999999999 32          1 2468999999999866  5567888


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHH
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLL  287 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~  287 (339)
                      +|..+...            .++|.|.+++. +.++.++.+|.+.|.
T Consensus       244 ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        244 AAGELGDK------------TLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            88877532            26999999986 789999999988875

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.3e-09  Score=96.49  Aligned_cols=180  Identities=22%  Similarity=0.202  Sum_probs=151.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113           11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE   88 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~   88 (339)
                      +.+++.+..|+.-|..+.++  +..-+...|++.+++.++++++..+|+.|+++++.++.+||..+..+.+.|+.+.|+.
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            56889999999999999998  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC-hhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CC
Q 048113           89 VLQCQS-TTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQ  165 (339)
Q Consensus        89 lL~~~~-~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~  165 (339)
                      .+.+++ ...+..|+.+++.|.. +.+....+...++...|..++++++         .+...+..++..+..|... ..
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---------~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---------TSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---------cchHHHHHHHHHHHHHHHhhhh
Confidence            998764 4577999999999996 5566788888888999999999843         5778888999999999774 44


Q ss_pred             ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ....+...|....+..+....  +.+..+.++.++.
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~l--~~~~~e~~l~~~l  278 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISSL--DFEVNEAALTALL  278 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhcc--chhhhHHHHHHHH
Confidence            445444446666666666553  4677888876666

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.29  E-value=5.3e-10  Score=101.22  Aligned_cols=250  Identities=15%  Similarity=0.151  Sum_probs=172.2

Q ss_pred             HHHHHHHHHH---HHHHHHhc---CChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhc------CChHHH
Q 048113           21 ANELGKLSRR---QKHKLVER---GIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKS------GIVPVL   86 (339)
Q Consensus        21 ~~~L~~l~~~---~~~~i~~~---g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~------g~i~~L   86 (339)
                      +..++.+...   .|..+.+.   +....++.+|+.  .++++..+.+..+..+...++.....+...      ....++
T Consensus        31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f  110 (312)
T PF03224_consen   31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF  110 (312)
T ss_dssp             HHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence            3444444432   44445442   346666666654  588999999999999999666555555552      267889


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC
Q 048113           87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL  166 (339)
Q Consensus        87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~  166 (339)
                      ++++.+++..++..|+..|..+....+.+..-...+.++.+++++.+..       ++.+...+..++.+|.+|...++.
T Consensus       111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l-------~~~~~~~~~~av~~L~~LL~~~~~  183 (312)
T PF03224_consen  111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQL-------SSSDSELQYIAVQCLQNLLRSKEY  183 (312)
T ss_dssp             HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT--------HHHH---HHHHHHHHHHHTSHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhh-------cCCCcchHHHHHHHHHHHhCcchh
Confidence            9999999999999999999999876655443333677899998887631       013445668899999999999999


Q ss_pred             hHHHHhcCcHHHHHHHh-----hccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHH
Q 048113          167 ISPIVSSGVTYCLLQLI-----HSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAV  240 (339)
Q Consensus       167 ~~~i~~~g~i~~Lv~ll-----~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~  240 (339)
                      |..+.+.|+++.+++++     .++....+++-.++.++. .++-+++....+.. .+.++.|+++++.. .+++.+.++
T Consensus       184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW-lLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~l  261 (312)
T PF03224_consen  184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW-LLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSL  261 (312)
T ss_dssp             HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH-HHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHH
Confidence            99999999999999999     233335778889999999 99999999999987 67999999999874 588999999


Q ss_pred             HHHHHhhccCchhHHHHHHhcCChHHHHHhhhc--CCHHHH
Q 048113          241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVD--GTWRAK  279 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~  279 (339)
                      .++.|+....+......|+..|++|.+..+...  +++++.
T Consensus       262 a~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~  302 (312)
T PF03224_consen  262 AILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT  302 (312)
T ss_dssp             HHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence            999999988765477888888888877776544  355554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.29  E-value=1.3e-09  Score=111.81  Aligned_cols=256  Identities=13%  Similarity=0.097  Sum_probs=161.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.|+..|.++++.+|..|+..|..+.        ..+.++.|+..|+++++.+|..|+.+|..+....+          .
T Consensus       624 ~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~  685 (897)
T PRK13800        624 AELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------P  685 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------c
Confidence            56889999999999999999998764        45678889999999999999999999887753111          1


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-----------c--hH----HHHhcchHHHHHHHhcCCCCCCCCccCCC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLE-----------N--KL----EIASSGAIQRLVEILNGDLADDDNSYGRI  145 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-----------~--~~----~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~  145 (339)
                      .+.|...|+++++.++..|+.+|..+...+.           .  |.    .+...+..+.|..++.+           .
T Consensus       686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D-----------~  754 (897)
T PRK13800        686 APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD-----------E  754 (897)
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC-----------C
Confidence            2466677777777777777777665432110           0  00    00011122333444444           4


Q ss_pred             CHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113          146 SVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALV  225 (339)
Q Consensus       146 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv  225 (339)
                      ++.++..++.+|..+....        .+.++.|..++++.  +..++..|+.+|+ .+-..          ...++.++
T Consensus       755 ~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~--d~~VR~aA~~aLg-~~g~~----------~~~~~~l~  813 (897)
T PRK13800        755 NREVRIAVAKGLATLGAGG--------APAGDAVRALTGDP--DPLVRAAALAALA-ELGCP----------PDDVAAAT  813 (897)
T ss_pred             CHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCC--CHHHHHHHHHHHH-hcCCc----------chhHHHHH
Confidence            5555555555555443211        12356677777664  4677777777777 32111          12235577


Q ss_pred             HHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhH
Q 048113          226 ETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNE  305 (339)
Q Consensus       226 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~  305 (339)
                      ..|+++++.++..|+.+|..+...            ..++.|+.++.+.++.++..|+.+|..+...           ..
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-----------~~  870 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRWPGD-----------PA  870 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----------HH
Confidence            777777788888888888766421            1468999999999999999999999876211           12


Q ss_pred             HHHHHHHHHHhcCcccchHHHHHHHH
Q 048113          306 LVEQIMQEIDAEGDTVAGTTLRLVEE  331 (339)
Q Consensus       306 ~~~~i~~~~~~~~~~~~~~a~~~l~~  331 (339)
                      ....+...+.-+..+++..|.+.|..
T Consensus       871 a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        871 ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            23333334433446677777777653

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=5e-09  Score=100.25  Aligned_cols=279  Identities=18%  Similarity=0.204  Sum_probs=211.6

Q ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCc------ch
Q 048113            3 EMLMDNLLN-GERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSE------RN   73 (339)
Q Consensus         3 ~~Lv~~L~s-~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~------~~   73 (339)
                      +.|+++..+ .=.+.|..|++.|+.+++.+|..+...| +++|+..|+.+  |++....++.++.++..+++      +.
T Consensus        25 ~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds  103 (970)
T KOG0946|consen   25 EKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS  103 (970)
T ss_pred             HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence            456777764 4568899999999999999988876665 67788888765  89999999999999998542      22


Q ss_pred             h----------hHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--chHHHH-hcchHHHHHHHhcCCCCCCC
Q 048113           74 K----------IRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--NKLEIA-SSGAIQRLVEILNGDLADDD  139 (339)
Q Consensus        74 ~----------~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~-~~g~i~~Lv~ll~~~~~~~~  139 (339)
                      +          +.+++ .+-|..|+..+...+-.+|..+...+.++..+.+  .+..+. .+-+|.+|+.+|+.      
T Consensus       104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D------  177 (970)
T KOG0946|consen  104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD------  177 (970)
T ss_pred             hhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh------
Confidence            2          23443 4789999999999999999999999999876443  355555 56799999999998      


Q ss_pred             CccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          140 NSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       140 ~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                           ....+|..++..|..|..+....+.++.. +++..|+.++...  .+..-+.+.|+..|-|++-.+..|...+.+
T Consensus       178 -----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE  252 (970)
T KOG0946|consen  178 -----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE  252 (970)
T ss_pred             -----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence                 78889999999999999988888877776 8999999999763  233567899999999777778888888876


Q ss_pred             hCCcHHHHHHHhhc---CCh--------HH--HHHHHHHHHHhhccCc-----hhHHHHHHhcCChHHHHHhhhcC--CH
Q 048113          217 TCGAIRALVETIEE---GSP--------QC--KEHAVAILLLICKSCR-----DKYRSSILKEGVMPGLLQLSVDG--TW  276 (339)
Q Consensus       217 ~~g~i~~Lv~lL~~---~~~--------~~--~~~a~~~L~~l~~~~~-----~~~~~~~~~~g~i~~L~~ll~~~--~~  276 (339)
                       .+.||.|.++|..   ++.        ++  .-.++.++..+...+.     ..+++.+...+++..|+.++.+.  ..
T Consensus       253 -~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~  331 (970)
T KOG0946|consen  253 -GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA  331 (970)
T ss_pred             -cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence             8999999988863   121        11  1234455555543221     12445677789999999986655  45


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 048113          277 RAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       277 ~~~~~A~~~L~~l~~~~~  294 (339)
                      +++..+...+....+++.
T Consensus       332 dIltesiitvAevVRgn~  349 (970)
T KOG0946|consen  332 DILTESIITVAEVVRGNA  349 (970)
T ss_pred             hHHHHHHHHHHHHHHhch
Confidence            567777777777766543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.21  E-value=1.1e-09  Score=99.15  Aligned_cols=220  Identities=17%  Similarity=0.230  Sum_probs=156.6

Q ss_pred             HHHHHHc--CCCHHHHHHHHHHHHHHHHH---HHHHHHh------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc
Q 048113            4 MLMDNLL--NGERETQIQAANELGKLSRR---QKHKLVE------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER   72 (339)
Q Consensus         4 ~Lv~~L~--s~~~~~~~~a~~~L~~l~~~---~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~   72 (339)
                      .++.+|.  +++++.....+..+.++..+   ....+.+      .....+++++++++|..++..|+..|..|....+.
T Consensus        59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~  138 (312)
T PF03224_consen   59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK  138 (312)
T ss_dssp             ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence            3445554  46888888899999998876   3333333      23789999999999999999999999999985443


Q ss_pred             hhhHHhhcCChHHHHHhhcC----CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHh------cCCCCCCCCcc
Q 048113           73 NKIRIVKSGIVPVLLEVLQC----QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL------NGDLADDDNSY  142 (339)
Q Consensus        73 ~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll------~~~~~~~~~~~  142 (339)
                      .... ...+.++.++..+.+    ++.+.+..++.+|.+|...+..|..+.+.++++.++.++      .+.        
T Consensus       139 ~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~--------  209 (312)
T PF03224_consen  139 RSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNS--------  209 (312)
T ss_dssp             --HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH----------------
T ss_pred             cccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCC--------
Confidence            3332 225667888887765    345577999999999999999999999999999999999      232        


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcH
Q 048113          143 GRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAI  221 (339)
Q Consensus       143 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i  221 (339)
                        .+.....+++-++|-||.+++....+.+.+.++.|+++++... .+++.+-+++++.|.+...+. +...++. .|+ 
T Consensus       210 --~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~-  284 (312)
T PF03224_consen  210 --SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIELMVL-CGL-  284 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-H-
T ss_pred             --CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHHHHH-ccH-
Confidence              5678888999999999999999999999999999999999875 589999999999955544443 6777775 454 


Q ss_pred             HHHHHHhhc---CChHHHH
Q 048113          222 RALVETIEE---GSPQCKE  237 (339)
Q Consensus       222 ~~Lv~lL~~---~~~~~~~  237 (339)
                      ..+++.|..   +++++.+
T Consensus       285 l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  285 LKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             HHHHHHHHSS--SSHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHH
Confidence            445555544   3455554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2e-09  Score=95.29  Aligned_cols=187  Identities=21%  Similarity=0.204  Sum_probs=158.9

Q ss_pred             cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHH
Q 048113           50 SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLV  128 (339)
Q Consensus        50 ~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv  128 (339)
                      +.+.+-++.|+.-|..++. +-+|...++..|+..+++..+++++.++|+.|++++...+++. ..+..+.+.|+.++|+
T Consensus        94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            3478899999999999999 7999999999999999999999999999999999999999755 5688899999999999


Q ss_pred             HHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113          129 EILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS  207 (339)
Q Consensus       129 ~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~  207 (339)
                      .++.+.          .+..++..|+.++++|.. ++.+...+...++...|.+.|+++..+..++..++..+..++...
T Consensus       173 ~~ls~~----------~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~  242 (342)
T KOG2160|consen  173 KILSSD----------DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED  242 (342)
T ss_pred             HHHccC----------CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence            999874          677888999999999998 567778888898899999999997667889999999999555555


Q ss_pred             HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      ...+..+ ...|+...++.+......+..+.++.++..+..
T Consensus       243 ~s~~d~~-~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  243 KSDEDIA-SSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhhHH-HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            5555544 436777777778877788888888888766654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.17  E-value=2e-08  Score=92.94  Aligned_cols=316  Identities=12%  Similarity=0.126  Sum_probs=211.1

Q ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHHHHH--HH-HHHHh-----cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh
Q 048113            4 MLMDNLL-NGERETQIQAANELGKLSRR--QK-HKLVE-----RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK   74 (339)
Q Consensus         4 ~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~-~~i~~-----~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~   74 (339)
                      .++.+|. .+++++....+..+..+...  .+ ..|.+     .+...+++.+|..++.-+...|+..|..+....+.+.
T Consensus        57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~  136 (429)
T cd00256          57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKM  136 (429)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcccc
Confidence            3555665 45667777777777777665  22 33444     4678888899998899999999999999987433321


Q ss_pred             hHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           75 IRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                      ......-...-|...+.++ +...+.-++.+|..|...++.|..+.+.++++.|+.+|+...         .+...+..+
T Consensus       137 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~---------~~~Ql~Y~~  207 (429)
T cd00256         137 EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT---------LGFQLQYQS  207 (429)
T ss_pred             chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc---------ccHHHHHHH
Confidence            1111111233445555554 466788888999999999999998888889999999998742         367889999


Q ss_pred             HHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC------HhhhHHHHhhCCcHHHHHHH
Q 048113          154 IATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS------EDALQEIAATCGAIRALVET  227 (339)
Q Consensus       154 ~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~------~~~~~~i~~~~g~i~~Lv~l  227 (339)
                      +-++|-|+.+++....+.+.|.|+.|+++++... .+++.+-++.+|.|.+...      ......+++ .| ++.+++.
T Consensus       208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~-l~~~l~~  284 (429)
T cd00256         208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CK-VLKTLQS  284 (429)
T ss_pred             HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cC-hHHHHHH
Confidence            9999999999887777777899999999999864 5899999999999655532      122334554 45 4556666


Q ss_pred             hhc---CChHHHHHH-------HHHHHHhhcc--------------Cch--------hHHHHHHhc--CChHHHHHhhh-
Q 048113          228 IEE---GSPQCKEHA-------VAILLLICKS--------------CRD--------KYRSSILKE--GVMPGLLQLSV-  272 (339)
Q Consensus       228 L~~---~~~~~~~~a-------~~~L~~l~~~--------------~~~--------~~~~~~~~~--g~i~~L~~ll~-  272 (339)
                      |+.   +++++.+..       -..+..++..              +|.        ++...+.+.  ..+..|++++. 
T Consensus       285 L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~  364 (429)
T cd00256         285 LEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET  364 (429)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            654   234333211       1111222211              111        122334332  36678888885 


Q ss_pred             cCCHHHHHHHHHHHHHHhccCCCcchhhhh-hhHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113          273 DGTWRAKNMARDLLLLLRDCSSFGSRSKQL-KNELVEQIMQEIDAEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       273 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v  333 (339)
                      +.++.+..-|+.=+..+.+..+.+  +..+ .-++=+.+|..+.-++++++..|...++.++
T Consensus       365 s~d~~~laVAc~Dige~vr~~P~g--r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         365 SVDPIILAVACHDIGEYVRHYPRG--KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CCCcceeehhhhhHHHHHHHCccH--HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            446666666777666666655532  1222 3345666777776778999999999998874

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.16  E-value=1.1e-08  Score=91.91  Aligned_cols=277  Identities=17%  Similarity=0.094  Sum_probs=200.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCC-hHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGI-IAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~-i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.++.+|...++.....+.+.++.++..  .+-...+... ...|-..+++ .+++....++++|..+.. -++.|..++
T Consensus       117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v  195 (442)
T KOG2759|consen  117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFV  195 (442)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhheee
Confidence            4678888899999998899999998875  2111111111 1223334444 577888899999999999 699999999


Q ss_pred             hcCChHHHHHhhcC--CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQC--QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      .++++..++..+.+  .+-.++-..+.+++.|+.++...+.+...+.|+.|.++++..          ...++..-.+.+
T Consensus       196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~----------~KEKV~Rivlai  265 (442)
T KOG2759|consen  196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES----------TKEKVTRIVLAI  265 (442)
T ss_pred             ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence            99999999999843  267789999999999999888878887889999999999884          578888899999


Q ss_pred             HHhhcCCCC---C----hHHHHhcCcHHHHHHHhhccccCchHHHHHH---HHHHH---hhcCCH---------------
Q 048113          157 LHNLSTCHQ---L----ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI---ALLEN---IVSSSE---------------  208 (339)
Q Consensus       157 L~nLs~~~~---~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~---~~L~n---~l~~~~---------------  208 (339)
                      +.|+....+   .    +..++.+++.+.+-.+-.....++++...--   ..|.+   -++..+               
T Consensus       266 ~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP  345 (442)
T KOG2759|consen  266 FRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSP  345 (442)
T ss_pred             HHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCc
Confidence            999977542   2    3455666655555555444433455443211   11111   122111               


Q ss_pred             ---------hhhHHHHh-hCCcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113          209 ---------DALQEIAA-TCGAIRALVETIEEGS-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR  277 (339)
Q Consensus       209 ---------~~~~~i~~-~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  277 (339)
                               +|...+-+ ....+..|+.+|+..+ |.+-..|+.=+.......|. ++..+.+.|+=..+++++++.+|+
T Consensus       346 ~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~~  424 (442)
T KOG2759|consen  346 VHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDPE  424 (442)
T ss_pred             cccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCch
Confidence                     22222221 1234788999998754 77778888888888888765 888888999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 048113          278 AKNMARDLLLLLRD  291 (339)
Q Consensus       278 ~~~~A~~~L~~l~~  291 (339)
                      ++..|..+++.|-.
T Consensus       425 Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  425 VRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999977644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.13  E-value=1.8e-08  Score=103.44  Aligned_cols=226  Identities=19%  Similarity=0.111  Sum_probs=151.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-----------
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE-----------   71 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-----------   71 (339)
                      +.|+..|.++++.+|..|+.+|..+...       ....+.|...|+++++.+|..|+.+|..+..++.           
T Consensus       655 ~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d  727 (897)
T PRK13800        655 PALVAALGDGAAAVRRAAAEGLRELVEV-------LPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPD  727 (897)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhc-------cCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCC
Confidence            5688899999999999999999877432       1123455666666777777777776665542110           


Q ss_pred             -chhhH----HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113           72 -RNKIR----IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS  146 (339)
Q Consensus        72 -~~~~~----i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~  146 (339)
                       ..|..    +.+.+..+.|...+.++++++|..++.+|..+...        ....++.|..++++           .+
T Consensus       728 ~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D-----------~d  788 (897)
T PRK13800        728 HRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGD-----------PD  788 (897)
T ss_pred             HHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcC-----------CC
Confidence             00000    00011123334444444444444444444443221        11237889999988           78


Q ss_pred             HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113          147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE  226 (339)
Q Consensus       147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~  226 (339)
                      +.++..|+.+|.++...+.         .++.+...|.+.  +..++..|+.+|. .+.          . ...++.|+.
T Consensus       789 ~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~--d~~VR~~Aa~aL~-~l~----------~-~~a~~~L~~  845 (897)
T PRK13800        789 PLVRAAALAALAELGCPPD---------DVAAATAALRAS--AWQVRQGAARALA-GAA----------A-DVAVPALVE  845 (897)
T ss_pred             HHHHHHHHHHHHhcCCcch---------hHHHHHHHhcCC--ChHHHHHHHHHHH-hcc----------c-cchHHHHHH
Confidence            9999999999998844322         235678888774  5788999999999 432          2 457799999


Q ss_pred             HhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 048113          227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLL  288 (339)
Q Consensus       227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~  288 (339)
                      +|++++..++..|+.+|..+.. + +.         ..+.|...+.+.++.++..|..+|..
T Consensus       846 ~L~D~~~~VR~~A~~aL~~~~~-~-~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        846 ALTDPHLDVRKAAVLALTRWPG-D-PA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhcCCCHHHHHHHHHHHhccCC-C-HH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999999999999988721 1 21         36788889999999999999998853

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.08  E-value=4.8e-08  Score=95.05  Aligned_cols=284  Identities=17%  Similarity=0.198  Sum_probs=191.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV   83 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i   83 (339)
                      +.+-|.++++..|..|+++++++... ..     ...++.+.+++.++++.+|..|+.++..+...+|+.   +... .+
T Consensus        84 l~kdl~~~n~~~~~lAL~~l~~i~~~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~  154 (526)
T PF01602_consen   84 LQKDLNSPNPYIRGLALRTLSNIRTPEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LI  154 (526)
T ss_dssp             HHHHHCSSSHHHHHHHHHHHHHH-SHHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HH
T ss_pred             HHHhhcCCCHHHHHHHHhhhhhhcccchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HH
Confidence            45567899999999999999998854 22     224778889999999999999999999998854442   2222 68


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113           84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC  163 (339)
Q Consensus        84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~  163 (339)
                      +.+.+++.++++.++..|+.++..+...++. ..-.-...++.|.+++..           .++-.+...+..|..++..
T Consensus       155 ~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~L~~~l~~-----------~~~~~q~~il~~l~~~~~~  222 (526)
T PF01602_consen  155 PKLKQLLSDKDPSVVSAALSLLSEIKCNDDS-YKSLIPKLIRILCQLLSD-----------PDPWLQIKILRLLRRYAPM  222 (526)
T ss_dssp             HHHHHHTTHSSHHHHHHHHHHHHHHHCTHHH-HTTHHHHHHHHHHHHHTC-----------CSHHHHHHHHHHHTTSTSS
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHHccCcch-hhhhHHHHHHHhhhcccc-----------cchHHHHHHHHHHHhcccC
Confidence            9999999999999999999999998111111 001122344555555555           6888899999999988764


Q ss_pred             CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113          164 HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL  243 (339)
Q Consensus       164 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  243 (339)
                      ......  ....++.+..++++.  +..+...|..++. .+...+.    ..  ..+++.|++++.++++.++..++..|
T Consensus       223 ~~~~~~--~~~~i~~l~~~l~s~--~~~V~~e~~~~i~-~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  223 EPEDAD--KNRIIEPLLNLLQSS--SPSVVYEAIRLII-KLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             Chhhhh--HHHHHHHHHHHhhcc--ccHHHHHHHHHHH-HhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHH
Confidence            332221  045677888888864  4678888888888 6666655    33  35788999999988888999999999


Q ss_pred             HHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccc
Q 048113          244 LLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVA  322 (339)
Q Consensus       244 ~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~  322 (339)
                      ..++...++    . .. ..-..+..+..+.++.++..+..+|..+++..+    -    ..++..+...+. ....+.+
T Consensus       292 ~~l~~~~~~----~-v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~----~~Il~eL~~~l~~~~d~~~~  357 (526)
T PF01602_consen  292 SQLAQSNPP----A-VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESN----V----KEILDELLKYLSELSDPDFR  357 (526)
T ss_dssp             HHHCCHCHH----H-HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----H----HHHHHHHHHHHHHC--HHHH
T ss_pred             HHhhcccch----h-hh-hhhhhhheecCCCChhHHHHHHHHHhhcccccc----h----hhHHHHHHHHHHhccchhhh
Confidence            999876422    2 22 222223333448889999999999999987542    1    234555555552 3233355


Q ss_pred             hHHHHHHHHHHH
Q 048113          323 GTTLRLVEEMIA  334 (339)
Q Consensus       323 ~~a~~~l~~~v~  334 (339)
                      ..+-+.+..+..
T Consensus       358 ~~~i~~I~~la~  369 (526)
T PF01602_consen  358 RELIKAIGDLAE  369 (526)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHh
Confidence            554444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3e-08  Score=95.73  Aligned_cols=251  Identities=18%  Similarity=0.210  Sum_probs=193.6

Q ss_pred             HHHHHHcC-CCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            4 MLMDNLLN-GERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         4 ~Lv~~L~s-~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      .|+.-|.. +|+..|.+|+.-|+....-    .-..|--.-.+|.|+.+|++. +.+++..|+++|.+|+.-.|.....+
T Consensus       171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v  250 (1051)
T KOG0168|consen  171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV  250 (1051)
T ss_pred             HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence            34555554 4889999998888886543    333444567899999999886 78999999999999999999999999


Q ss_pred             hhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      ++.++||.|+.-|. =...++-+.++.+|-.++...+  ..|...|++...+.+|+.           -+..++..|+.+
T Consensus       251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDF-----------FSi~aQR~Alai  317 (1051)
T KOG0168|consen  251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDF-----------FSIHAQRVALAI  317 (1051)
T ss_pred             ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            99999999998554 4567899999999999998665  567789999999999998           788999999999


Q ss_pred             HHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc---CCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113          157 LHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS---SSEDALQEIAATCGAIRALVETIEEG  231 (339)
Q Consensus       157 L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~---~~~~~~~~i~~~~g~i~~Lv~lL~~~  231 (339)
                      ..|.|.  .++.-..+++  ++|.|..+|+..  +.+..+.++-+++....   ..++--.++.. .|.|....+++.-.
T Consensus       318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~--D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt  392 (1051)
T KOG0168|consen  318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQ--DKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVT  392 (1051)
T ss_pred             HHHHHhcCCCccchHHHH--HHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcC
Confidence            999987  3455555655  699999999875  46777777766663332   33444566676 79999999988753


Q ss_pred             ----ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113          232 ----SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD  273 (339)
Q Consensus       232 ----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~  273 (339)
                          +..+....+..|..+|..++. ....+.+.++...|..++..
T Consensus       393 ~t~Ls~~~~~~vIrmls~msS~~pl-~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  393 PTILSNGTYTGVIRMLSLMSSGSPL-LFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             cccccccchhHHHHHHHHHccCChH-HHHHHHHhhHHHHHHHHHhc
Confidence                234455566777777777655 66677788888888887754

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=6e-08  Score=83.89  Aligned_cols=273  Identities=16%  Similarity=0.169  Sum_probs=191.2

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +..+|+.|.+.+|.+|..|+..+..++.. .+..... .-.++.+.+++....+  .+.|+.+|.|++. ++..+..+.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~   81 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQ   81 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence            45789999999999999999999888876 4443332 5578888899887766  7889999999999 6888888887


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH---h---cchHHHHHH-HhcCCCCCCCCccCCCC-HHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA---S---SGAIQRLVE-ILNGDLADDDNSYGRIS-VQAKI  151 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~---~g~i~~Lv~-ll~~~~~~~~~~~~~~~-~~~~~  151 (339)
                      . .+..++.++.++...+-...+..|.||+..++....+.   .   ..++..++. +.+.+          .+ ..-..
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~----------~n~~a~f~  150 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKS----------YNAYAEFH  150 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcc----------cccccchh
Confidence            7 88888888888866778888899999998776543322   1   134555554 44442          22 23345


Q ss_pred             HHHHHHHhhcCCCCChHHHHhcCcHH-HHHHHhhccccCchHH-HHHHHHHHHhhcCCHhhhHHHHhh-CCcHHHH----
Q 048113          152 DAIATLHNLSTCHQLISPIVSSGVTY-CLLQLIHSSEKSSGLT-EKAIALLENIVSSSEDALQEIAAT-CGAIRAL----  224 (339)
Q Consensus       152 ~a~~~L~nLs~~~~~~~~i~~~g~i~-~Lv~ll~~~~~~~~~~-~~a~~~L~n~l~~~~~~~~~i~~~-~g~i~~L----  224 (339)
                      ..+-++.|+++...+|..+.+...++ .-..-+.+.  +..++ ...+++|. |++-.......+.+. ...+|.+    
T Consensus       151 ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~--~s~vRr~Gvagtlk-N~cFd~~~h~~lL~e~~~lLp~iLlPl  227 (353)
T KOG2973|consen  151 YLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSE--DSQVRRGGVAGTLK-NCCFDAKLHEVLLDESINLLPAILLPL  227 (353)
T ss_pred             HHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccccc--chhhhccchHHHHH-hhhccchhHHHHhcchHHHHHHHHhhc
Confidence            67788999999999999887765322 222223332  23443 44668888 677666666555531 1122222    


Q ss_pred             -----------------HHHhh-----cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh-hcCCHHHHHH
Q 048113          225 -----------------VETIE-----EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS-VDGTWRAKNM  281 (339)
Q Consensus       225 -----------------v~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~  281 (339)
                                       +++|.     .+++.++..-+.+|..||..  ..+|+.+...|+-|.+.++- ...++++++.
T Consensus       228 agpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpilRElhk~e~ded~~~a  305 (353)
T KOG2973|consen  228 AGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPILRELHKWEEDEDIREA  305 (353)
T ss_pred             CCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence                             24443     24578889999999999976  45899999999999888874 4567778777


Q ss_pred             HHHHHHHHhccC
Q 048113          282 ARDLLLLLRDCS  293 (339)
Q Consensus       282 A~~~L~~l~~~~  293 (339)
                      .-.+.+.+-...
T Consensus       306 ce~vvq~Lv~~e  317 (353)
T KOG2973|consen  306 CEQVVQMLVRLE  317 (353)
T ss_pred             HHHHHHHHHhcc
Confidence            777888887643

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.04  E-value=8e-08  Score=90.68  Aligned_cols=286  Identities=16%  Similarity=0.164  Sum_probs=205.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      ++..|.+.+|+....|....+|+..+   .+..+.+.|.++.|+.+++..  .+++...-+..+..+..+.......+.+
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            44556688999999999999999886   666789999999999987654  6677777778888888888888999999


Q ss_pred             cCChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCccchHHHH---------------------------------------
Q 048113           80 SGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIA---------------------------------------  119 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~---------------------------------------  119 (339)
                      ++..+.|.++|.+++ ..+++..++.+.++-...+..+...                                       
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~h  173 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDH  173 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchh
Confidence            999999999999888 5577777777766654332211000                                       


Q ss_pred             -----hcchHHHH---------------------------------------------------HHHhcCC---------
Q 048113          120 -----SSGAIQRL---------------------------------------------------VEILNGD---------  134 (339)
Q Consensus       120 -----~~g~i~~L---------------------------------------------------v~ll~~~---------  134 (339)
                           +.|..+++                                                   .++++++         
T Consensus       174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl  253 (678)
T KOG1293|consen  174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSL  253 (678)
T ss_pred             hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHH
Confidence                 01111111                                                   0111111         


Q ss_pred             ---------C------CCC-------C------------Cc---------------------------------------
Q 048113          135 ---------L------ADD-------D------------NS---------------------------------------  141 (339)
Q Consensus       135 ---------~------~~~-------~------------~~---------------------------------------  141 (339)
                               +      .|.       |            ++                                       
T Consensus       254 ~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~el  333 (678)
T KOG1293|consen  254 ECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTEL  333 (678)
T ss_pred             HHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHH
Confidence                     0      000       0            00                                       


Q ss_pred             ----------------------------------------------------cCCCCHHHHHHHHHHHHhhcCC-CCChH
Q 048113          142 ----------------------------------------------------YGRISVQAKIDAIATLHNLSTC-HQLIS  168 (339)
Q Consensus       142 ----------------------------------------------------~~~~~~~~~~~a~~~L~nLs~~-~~~~~  168 (339)
                                                                          .--.+.+++.+|+.++.+++.. ...+.
T Consensus       334 lf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~t  413 (678)
T KOG1293|consen  334 LFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRT  413 (678)
T ss_pred             HHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                                                0113556667777777777652 33333


Q ss_pred             HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      -+-...+.++|++++.++  +.-+...++++++|.+-....-+..+.. .|+|..+..++.+..+..+..+.|+|.++..
T Consensus       414 g~~~~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  414 GLKRNDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             CCccchhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            355567899999999774  5678888999999766667777888887 8999999999999999999999999999998


Q ss_pred             cCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          249 SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      .+.++.+......=.-..+..+..++++.+|+.+..+|+||..+.
T Consensus       491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            876654444444334455677899999999999999999998865

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.02  E-value=6.9e-08  Score=93.92  Aligned_cols=251  Identities=15%  Similarity=0.149  Sum_probs=177.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.+...+.++++.+|.+|+.++..+.......+... .++.+..+|.+.++.++..|+.++..+ ..+++... -.-...
T Consensus       117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~  193 (526)
T PF01602_consen  117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKL  193 (526)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHH
Confidence            467788899999999999999999988744444444 789999999999999999999999999 31232211 111233


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      ++.|.+++...++-.+...+.++..++..++....  ....++.+..++++           .++.+...++.++..+..
T Consensus       194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s-----------~~~~V~~e~~~~i~~l~~  260 (526)
T PF01602_consen  194 IRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQS-----------SSPSVVYEAIRLIIKLSP  260 (526)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHSS
T ss_pred             HHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhc-----------cccHHHHHHHHHHHHhhc
Confidence            55556666778888999998998887764443220  14578888888888           789999999999998876


Q ss_pred             CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChHHHHHHHH
Q 048113          163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQCKEHAVA  241 (339)
Q Consensus       163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~  241 (339)
                      .+.     .-..+++.|.+++.++  +..++..++..|. .++...   ...+.   .....+..+. ++++.++..++.
T Consensus       261 ~~~-----~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~-~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  261 SPE-----LLQKAINPLIKLLSSS--DPNVRYIALDSLS-QLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SHH-----HHHHHHHHHHHHHTSS--SHHHHHHHHHHHH-HHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             chH-----HHHhhHHHHHHHhhcc--cchhehhHHHHHH-Hhhccc---chhhh---hhhhhhheecCCCChhHHHHHHH
Confidence            555     3345788899999864  5778889999888 555443   12221   2233344555 778899999999


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~  291 (339)
                      +|..++..  . ....     +++.|.+.+. ..++..+..++..+..++.
T Consensus       327 lL~~l~~~--~-n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  327 LLYKLANE--S-NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HHHHH--H--H-HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             HHhhcccc--c-chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence            99999854  2 2232     5777888884 4477788888888777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=6.4e-08  Score=96.63  Aligned_cols=232  Identities=13%  Similarity=0.132  Sum_probs=158.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      +++-.+|.|.+|..|..|+.+|+.++.++.+.+..  ..+++..+..|++++|.+|..|+.+++.++.+-...-+.-...
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e  430 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE  430 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence            56778899999999999999999999984444443  5678888899999999999999999999999866666666677


Q ss_pred             CChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           81 GIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        81 g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      -.+|.|+..+++. ++.++.+|+.++.|++...+. ..+.  =.+.+++++.+|..+          +.+.+++.++.+|
T Consensus       431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~----------~~~~v~e~vvtaI  499 (1075)
T KOG2171|consen  431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQS----------SKPYVQEQAVTAI  499 (1075)
T ss_pred             hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHH
Confidence            7888999999886 689999999999999975543 2222  235566555555443          7999999999999


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-----
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-----  230 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-----  230 (339)
                      ...+...+..-.=.-.-.+|.|.++|++..+  ...++-++..++.  +-....+|+++..   ....+++++-.     
T Consensus       500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis--li~~AVGke~F~~---~a~eliqll~~~~~~~  574 (1075)
T KOG2171|consen  500 ASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS--LIARAVGKEKFLP---LAEELIQLLLELQGSD  574 (1075)
T ss_pred             HHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH--HHHHHhhhhhhhH---hHHHHHHHHHhhcccc
Confidence            9987644332111112468888888887642  1233334333333  2223345555543   23334443322     


Q ss_pred             --CChHHHHHHHHHHHHhhccC
Q 048113          231 --GSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       231 --~~~~~~~~a~~~L~~l~~~~  250 (339)
                        .+....+.......++|..-
T Consensus       575 ~~~dd~~~sy~~~~warmc~il  596 (1075)
T KOG2171|consen  575 QDDDDPLRSYMIAFWARMCRIL  596 (1075)
T ss_pred             hhhccccHHHHHHHHHHHHHHh
Confidence              23344555666666776543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.3e-07  Score=91.42  Aligned_cols=223  Identities=17%  Similarity=0.153  Sum_probs=164.5

Q ss_pred             hHHHHHhhcCC-ChhHHHHHHHHHHHHh-c-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           83 VPVLLEVLQCQ-STTLIELTVAAMLILS-S-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        83 i~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      +..|+.=|+.. ++..+..++.=|+.+. . +++.-..+--...+|.|+.+|+.+          .+.++...|+++|.+
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E----------~n~DIMl~AcRalty  238 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE----------HNFDIMLLACRALTY  238 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHH
Confidence            34455555554 6666766666665543 3 333333344556899999999886          689999999999999


Q ss_pred             hcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113          160 LST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH  238 (339)
Q Consensus       160 Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  238 (339)
                      |+. .|.....+++.++||.|+.-|..-+ ..++.++++.+|. .++... . +.+.+ +|++...+.+|+=-+..+|..
T Consensus       239 l~evlP~S~a~vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE-~iSR~H-~-~AiL~-AG~l~a~LsylDFFSi~aQR~  313 (1051)
T KOG0168|consen  239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIE-YIDVAEQSLQALE-KISRRH-P-KAILQ-AGALSAVLSYLDFFSIHAQRV  313 (1051)
T ss_pred             HHhhccchhheeecccchHHHHHhhhhhh-hhHHHHHHHHHHH-HHHhhc-c-HHHHh-cccHHHHHHHHHHHHHHHHHH
Confidence            998 7899999999999999998887643 5889999999999 676532 2 36666 899999999998777889999


Q ss_pred             HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCC-cchhh-hhhhHHHHHHHHHHHh
Q 048113          239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF-GSRSK-QLKNELVEQIMQEIDA  316 (339)
Q Consensus       239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~-~~~~~~~~~i~~~~~~  316 (339)
                      |+.+..|+|..-+.+--.-+.  .++|.|..++...+.+..+.++.++..+.+.-.. ...-+ ....+.++++.+.+.+
T Consensus       314 AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  314 ALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV  391 (1051)
T ss_pred             HHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence            999999999754432222233  4899999999999999999999988888764321 11112 2346888888888775


Q ss_pred             cCcccc
Q 048113          317 EGDTVA  322 (339)
Q Consensus       317 ~~~~~~  322 (339)
                      ....+.
T Consensus       392 t~t~Ls  397 (1051)
T KOG0168|consen  392 TPTILS  397 (1051)
T ss_pred             Cccccc
Confidence            544443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=6.7e-07  Score=86.06  Aligned_cols=278  Identities=21%  Similarity=0.225  Sum_probs=197.3

Q ss_pred             cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCcc-
Q 048113           38 RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLE-  113 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~-  113 (339)
                      ...|+.|+.-+.+. -.+-|+.|++.|..+++   ..|..+ .+.|+++|+..|..+  ++++...++.+++++...++ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            34577777766554 56789999999999998   355544 556789999999875  78999999999999986553 


Q ss_pred             ------ch-----------HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhc-
Q 048113          114 ------NK-----------LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSS-  173 (339)
Q Consensus       114 ------~~-----------~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~-  173 (339)
                            .+           ..|-..+.|..++..+..           .+-.+|..++..|.++-.  ..+.+..+... 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-----------~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P  165 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-----------FDFHVRLYAIQLLSALLSCRPTELQDALLVSP  165 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-----------hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc
Confidence                  12           123357889999999988           799999999999999854  34666666665 


Q ss_pred             CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-C---ChHHHHHHHHHHHHhhcc
Q 048113          174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-G---SPQCKEHAVAILLLICKS  249 (339)
Q Consensus       174 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~---~~~~~~~a~~~L~~l~~~  249 (339)
                      -+|..|+.+|.+.  .+.++..++-.|+ .++......++++.-.+++..|..++.. |   ..-+.+-|+..|-||-.+
T Consensus       166 ~gIS~lmdlL~Ds--rE~IRNe~iLlL~-eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~  242 (970)
T KOG0946|consen  166 MGISKLMDLLRDS--REPIRNEAILLLS-ELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN  242 (970)
T ss_pred             hhHHHHHHHHhhh--hhhhchhHHHHHH-HHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence            7899999999984  6888999999999 6777777777776657999999999985 2   346788899999999887


Q ss_pred             CchhHHHHHHhcCChHHHHHhhhc---CC-------H-HH--HHHHHHHHHHHhccCCCc----chhhhhhhHHHHHHHH
Q 048113          250 CRDKYRSSILKEGVMPGLLQLSVD---GT-------W-RA--KNMARDLLLLLRDCSSFG----SRSKQLKNELVEQIMQ  312 (339)
Q Consensus       250 ~~~~~~~~~~~~g~i~~L~~ll~~---~~-------~-~~--~~~A~~~L~~l~~~~~~~----~~~~~~~~~~~~~i~~  312 (339)
                      +.. .+..+.+.+-+|.|.+++..   ++       + ++  -..|+.+++.+...++-.    +.++.+...++-..+.
T Consensus       243 N~S-NQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc  321 (970)
T KOG0946|consen  243 NIS-NQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC  321 (970)
T ss_pred             Ccc-hhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH
Confidence            644 77888899999999977643   22       1 12  245556666665533211    0123344444444444


Q ss_pred             HHH-hcC--cccchHHHHHHHHHHH
Q 048113          313 EID-AEG--DTVAGTTLRLVEEMIA  334 (339)
Q Consensus       313 ~~~-~~~--~~~~~~a~~~l~~~v~  334 (339)
                      .+. ..|  .++...+--.++++|+
T Consensus       322 ~il~~~~vp~dIltesiitvAevVR  346 (970)
T KOG0946|consen  322 TILMHPGVPADILTESIITVAEVVR  346 (970)
T ss_pred             HHHcCCCCcHhHHHHHHHHHHHHHH
Confidence            443 344  3344445555555554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.86  E-value=2.4e-07  Score=84.41  Aligned_cols=265  Identities=13%  Similarity=0.106  Sum_probs=182.9

Q ss_pred             HHHHHHcCCCHHH--HHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            4 MLMDNLLNGERET--QIQAANELGKLSRR-QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~--~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      .|+.++.+.+.+.  |.++.+.|-.+... |++.+..-| ...++.+.+ ...++.+...+..|.++-+++++.++.+++
T Consensus       184 ~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva  262 (832)
T KOG3678|consen  184 LLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA  262 (832)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            5778888887765  89999999998877 888888755 333444433 347788999999999999999999999999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      .|++..++--....+|.+..+++-+|.|++..  ...+..+++..+-+-|.-+-.+           .+.-.+.+|+.+.
T Consensus       263 a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-----------kDel~R~~AClAV  331 (832)
T KOG3678|consen  263 AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-----------KDELLRLHACLAV  331 (832)
T ss_pred             hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-----------hHHHHHHHHHHHH
Confidence            99999999888888999999999999999853  3457778777777777776666           6888899999999


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      +-|+.+.+.-..+...|.+...-.++.+.+ .....+.+-.            . .-....+-++.|+-+|++.--+.+-
T Consensus       332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~D-P~~FARD~hd------------~-aQG~~~d~LqRLvPlLdS~R~EAq~  397 (832)
T KOG3678|consen  332 AVLATNKEVEREVRKSGTLALVEPLVASLD-PGRFARDAHD------------Y-AQGRGPDDLQRLVPLLDSNRLEAQC  397 (832)
T ss_pred             hhhhhhhhhhHHHhhccchhhhhhhhhccC-cchhhhhhhh------------h-hccCChHHHHHhhhhhhcchhhhhh
Confidence            999988877666666665443333333321 1222221111            0 0011234578888888864333333


Q ss_pred             HHHHHHHHhhccCchhHH-HHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          238 HAVAILLLICKSCRDKYR-SSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       238 ~a~~~L~~l~~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      -++.-++.=+.-....++ +.+.+-|+|+.|-++..+.+...-.-|..+|..+-..-+
T Consensus       398 i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP  455 (832)
T KOG3678|consen  398 IGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP  455 (832)
T ss_pred             hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence            222222211111001112 345668999999999887766666777888888865443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.2e-07  Score=86.78  Aligned_cols=302  Identities=14%  Similarity=0.110  Sum_probs=198.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE-------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI   75 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~   75 (339)
                      +.|..+|.+.+...+.-|..+|..++.+..+.+-.       .-.+|.++++.++.++.+|..|..++..+--.  ....
T Consensus       131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~qa  208 (885)
T KOG2023|consen  131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QTQA  208 (885)
T ss_pred             HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--CcHH
Confidence            56889999999999999999999999873322221       34789999999999999999999998777662  3333


Q ss_pred             HHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           76 RIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        76 ~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                      .+... ..++.+..+-...++++|.+.|.++..|......|-.=-=.+.++.+++..+.           .+..+...|+
T Consensus       209 l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd-----------~dE~VALEAC  277 (885)
T KOG2023|consen  209 LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD-----------VDENVALEAC  277 (885)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC-----------cchhHHHHHH
Confidence            33333 34566666667778999999999999998755533211124678888888777           6888999999


Q ss_pred             HHHHhhcCCCCChHHHHhc--CcHHHHHHHhhccccCc------------------------------------------
Q 048113          155 ATLHNLSTCHQLISPIVSS--GVTYCLLQLIHSSEKSS------------------------------------------  190 (339)
Q Consensus       155 ~~L~nLs~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~------------------------------------------  190 (339)
                      .....++..+--+..+...  ..+|.|+.-|...+.+.                                          
T Consensus       278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd  357 (885)
T KOG2023|consen  278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD  357 (885)
T ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence            9999999888444444332  56666665443211100                                          


Q ss_pred             ------------hHH---HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHH
Q 048113          191 ------------GLT---EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYR  255 (339)
Q Consensus       191 ------------~~~---~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  255 (339)
                                  .++   .+++.+|+| +     .+.++..  -.+|.|-+.|.+..=.++|.++-+|..++....    
T Consensus       358 De~DDdD~~~dWNLRkCSAAaLDVLan-v-----f~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----  425 (885)
T KOG2023|consen  358 DEDDDDDAFSDWNLRKCSAAALDVLAN-V-----FGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----  425 (885)
T ss_pred             cccccccccccccHhhccHHHHHHHHH-h-----hHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----
Confidence                        112   223444442 1     2223332  234444445555556678888888888875432    


Q ss_pred             HHHHhc--CChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-cccchHHHHHHHH
Q 048113          256 SSILKE--GVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-DTVAGTTLRLVEE  331 (339)
Q Consensus       256 ~~~~~~--g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~l~~  331 (339)
                      +-+...  ..+|.|++++.+..+-+|.-.+|.|...++---.. .+.+.-...++.+++.+ .|+ .++-+.|=..++.
T Consensus       426 ~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~-~~~~~f~pvL~~ll~~l-lD~NK~VQEAAcsAfAt  502 (885)
T KOG2023|consen  426 QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD-SRDEYFKPVLEGLLRRL-LDSNKKVQEAACSAFAT  502 (885)
T ss_pred             hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC-ChHhhhHHHHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence            222221  26888999999999999999999998887643211 23345566667766666 454 5555554444443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=2.2e-06  Score=85.94  Aligned_cols=283  Identities=16%  Similarity=0.170  Sum_probs=171.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      +.|+.-.+|+++..|..|+..|..+...  ++..=.-....+.+.+-+.+++..++..|++++..++...+.++.....-
T Consensus       121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~  200 (1075)
T KOG2171|consen  121 QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKF  200 (1075)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4567777899999999999999998875  21110011223334444555555599999999999888554343333222


Q ss_pred             -CChHHHHHhhc----CCC-------------------------------------------hhHHHHHHHHHHHHhcCc
Q 048113           81 -GIVPVLLEVLQ----CQS-------------------------------------------TTLIELTVAAMLILSSCL  112 (339)
Q Consensus        81 -g~i~~Lv~lL~----~~~-------------------------------------------~~~~~~a~~~L~nLs~~~  112 (339)
                       ..+|.++..+.    .++                                           +.+|..|+..|..++..-
T Consensus       201 ~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A  280 (1075)
T KOG2171|consen  201 RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA  280 (1075)
T ss_pred             HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence             34454444332    111                                           345666666666665442


Q ss_pred             cchHHHH---hcchHHHHHHHhcCCCCCCCC--------c------------------------------------cCCC
Q 048113          113 ENKLEIA---SSGAIQRLVEILNGDLADDDN--------S------------------------------------YGRI  145 (339)
Q Consensus       113 ~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~--------~------------------------------------~~~~  145 (339)
                      +...+..   -...++.++.++....+|++|        +                                    ..|.
T Consensus       281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~  360 (1075)
T KOG2171|consen  281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST  360 (1075)
T ss_pred             HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC
Confidence            2111111   122345555555432222110        0                                    4667


Q ss_pred             CHHHHHHHHHHHHhhcCCCCChH-HHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC--HhhhHHHHhhCCc
Q 048113          146 SVQAKIDAIATLHNLSTCHQLIS-PIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS--EDALQEIAATCGA  220 (339)
Q Consensus       146 ~~~~~~~a~~~L~nLs~~~~~~~-~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~--~~~~~~i~~~~g~  220 (339)
                      +...|..|+.+|.-++.   ++. .|...  .+++..+..|+++  ++.++..|+.+++ .++.+  |+..+..-  .-.
T Consensus       361 ~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naig-Q~stdl~p~iqk~~~--e~l  432 (1075)
T KOG2171|consen  361 EWKERHAALLALSVIAE---GCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIG-QMSTDLQPEIQKKHH--ERL  432 (1075)
T ss_pred             CHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHH-hhhhhhcHHHHHHHH--Hhc
Confidence            77888888877777654   222 22221  3566666777764  6899999999999 77765  33333333  457


Q ss_pred             HHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChH-HHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          221 IRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMP-GLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       221 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~-~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      ++.|+..+.+ .+++++..|+.++.|++...+...-.... .+.+. .|..+..++++.+++.++.++...+...+
T Consensus       433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            7889999987 46899999999999998765432111111 24444 33445678889999999999999987653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1.6e-06  Score=75.20  Aligned_cols=269  Identities=16%  Similarity=0.157  Sum_probs=176.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113           42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS  120 (339)
Q Consensus        42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  120 (339)
                      ..++.++.+.+|.++..|...+..|+..  ..+..... .-.++.+.+++....+  -+.|+.++.|++..+.-+..+.+
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~   81 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ   81 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence            4578999999999999999999999984  22322222 2457888888877765  67788999999998887776665


Q ss_pred             cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc------CcHHHHHHHhhccccCchH-H
Q 048113          121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS------GVTYCLLQLIHSSEKSSGL-T  193 (339)
Q Consensus       121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~------g~i~~Lv~ll~~~~~~~~~-~  193 (339)
                      . .+..+++++.+           .....-...+..|.||++.+.....+...      .++..++..+.+.+..... .
T Consensus        82 ~-~~k~l~~~~~~-----------p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f  149 (353)
T KOG2973|consen   82 D-LLKVLMDMLTD-----------PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEF  149 (353)
T ss_pred             H-HHHHHHHHhcC-----------cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccch
Confidence            5 88899999887           44556677888999999988776554332      3455555555443222222 3


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhhCCc--HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhc--CChHHHHH
Q 048113          194 EKAIALLENIVSSSEDALQEIAATCGA--IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKE--GVMPGLLQ  269 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~--i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--g~i~~L~~  269 (339)
                      ....-+++ +++..+.+|.-+.. ...  ++.++.+-+.++.-.+...++.|.|.|++..  ....++..  ..+|.+.-
T Consensus       150 ~ylA~vf~-nls~~~~gR~l~~~-~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~--~h~~lL~e~~~lLp~iLl  225 (353)
T KOG2973|consen  150 HYLAPVFA-NLSQFEAGRKLLLE-PKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK--LHEVLLDESINLLPAILL  225 (353)
T ss_pred             hHHHHHHH-HHhhhhhhhhHhcc-hhhhhHhhhhcccccchhhhccchHHHHHhhhccch--hHHHHhcchHHHHHHHHh
Confidence            34445666 89999999988775 332  2233333333455567788999999998743  44555542  23444321


Q ss_pred             ---------------------hh-----hcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH--hcCccc
Q 048113          270 ---------------------LS-----VDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID--AEGDTV  321 (339)
Q Consensus       270 ---------------------ll-----~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~  321 (339)
                                           .+     +.+++.++..-..+|..|+....   -++.+-+-++-.|+++.-  .+.+++
T Consensus       226 Plagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~---GRe~lR~kgvYpilRElhk~e~ded~  302 (353)
T KOG2973|consen  226 PLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA---GREVLRSKGVYPILRELHKWEEDEDI  302 (353)
T ss_pred             hcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH---hHHHHHhcCchHHHHHHhcCCCcHHH
Confidence                                 11     12467788888888877776554   355677777778888874  334555


Q ss_pred             chHHHHHHHHHH
Q 048113          322 AGTTLRLVEEMI  333 (339)
Q Consensus       322 ~~~a~~~l~~~v  333 (339)
                      +..+.++.+=+|
T Consensus       303 ~~ace~vvq~Lv  314 (353)
T KOG2973|consen  303 REACEQVVQMLV  314 (353)
T ss_pred             HHHHHHHHHHHH
Confidence            555554444333

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.76  E-value=5.1e-06  Score=76.49  Aligned_cols=269  Identities=15%  Similarity=0.124  Sum_probs=188.9

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113            8 NLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVKSGIV   83 (339)
Q Consensus         8 ~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i   83 (339)
                      ++-+++.++|..+.+.++-+..+  .-..+.+.++=--++.-|..+  +...|++|++.++.+..- +.+... .-.|++
T Consensus        33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~~~-~~~~vv  110 (371)
T PF14664_consen   33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGPKE-IPRGVV  110 (371)
T ss_pred             HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCccc-CCHHHH
Confidence            45566699999999999998876  666777767555555555443  567899999999988873 333222 356889


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113           84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC  163 (339)
Q Consensus        84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~  163 (339)
                      ..++.+.+++++..+..|..+|+.++..++  +.+..+||+..|++.+.+           +..+.....+.++..+-..
T Consensus       111 ralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d-----------~~~~~~~~l~~~lL~lLd~  177 (371)
T PF14664_consen  111 RALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID-----------GSFSISESLLDTLLYLLDS  177 (371)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh-----------ccHhHHHHHHHHHHHHhCC
Confidence            999999999999999999999999998655  677899999999999987           4555888889999999888


Q ss_pred             CCChHHHHhcCcHHHHHHHhhcc-----ccCc--hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          164 HQLISPIVSSGVTYCLLQLIHSS-----EKSS--GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       164 ~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~--~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      |..|+.+...--++.++.-+.+.     .++.  +....+..++.-.+..++.--.--.+...++..|++.|..++++++
T Consensus       178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir  257 (371)
T PF14664_consen  178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIR  257 (371)
T ss_pred             cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHH
Confidence            98888776654466666555443     1122  2333444444425544443222222223578888888888888888


Q ss_pred             HHHHHHHHHhhccC-----------------ch------------------------------h----HHHHHHhcCChH
Q 048113          237 EHAVAILLLICKSC-----------------RD------------------------------K----YRSSILKEGVMP  265 (339)
Q Consensus       237 ~~a~~~L~~l~~~~-----------------~~------------------------------~----~~~~~~~~g~i~  265 (339)
                      +.....+..+-.-.                 +.                              .    .-..+++.|.++
T Consensus       258 ~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~  337 (371)
T PF14664_consen  258 KAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLE  337 (371)
T ss_pred             HHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHH
Confidence            77776665542200                 00                              0    112456789999


Q ss_pred             HHHHhhhcC-CHHHHHHHHHHHHHHhc
Q 048113          266 GLLQLSVDG-TWRAKNMARDLLLLLRD  291 (339)
Q Consensus       266 ~L~~ll~~~-~~~~~~~A~~~L~~l~~  291 (339)
                      .|++++.+. ++.+..+|.-+|..+-+
T Consensus       338 ~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  338 ALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            999998877 78888999888876654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.75  E-value=1.6e-06  Score=82.07  Aligned_cols=253  Identities=12%  Similarity=0.087  Sum_probs=169.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.+.......|...+..|+.++.+++..   -|.-+-...++.+|++++..++.-++..++.+++||.......|..|..
T Consensus       380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~  459 (678)
T KOG1293|consen  380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR  459 (678)
T ss_pred             HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH
Confidence            3344445567888999999999999886   4555667889999999998888899999999999999988899999999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      .|+|..+.+++.+.++.++..+.|+|.++..+.+......  ..=....++.+..+           .++.+++.+...|
T Consensus       460 ~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd-----------~d~~Vqeq~fqll  528 (678)
T KOG1293|consen  460 NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND-----------PDWAVQEQCFQLL  528 (678)
T ss_pred             cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC-----------CCHHHHHHHHHHH
Confidence            9999999999999999999999999999998766543322  33345667777777           7999999999999


Q ss_pred             HhhcC-CCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH-hhhHHHHhhCCcHHHHHHHhh----
Q 048113          158 HNLST-CHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE-DALQEIAATCGAIRALVETIE----  229 (339)
Q Consensus       158 ~nLs~-~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~-~~~~~i~~~~g~i~~Lv~lL~----  229 (339)
                      +||.- ..+....+++.  ..+..+...++-.. ..++...-..-..+++...+ +.+..+   .|..+.++-.-.    
T Consensus       529 RNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~-~~pi~ie~~~~~~~l~~~~d~~~~~am---~~~fk~lvl~~e~~~n  604 (678)
T KOG1293|consen  529 RNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAI-GSPILIEFLAKKMRLLNPLDTQQKKAM---EGIFKILVLLAEVNEN  604 (678)
T ss_pred             HHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhcc-CCceehhhHHHHHHhccchhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            99954 45666666665  23333333333221 23444333333332232222 222222   244444443222    


Q ss_pred             ----cCChHHHHHHHHHHHHhhccCc--hhHHHHHHhcCChHHHHHh
Q 048113          230 ----EGSPQCKEHAVAILLLICKSCR--DKYRSSILKEGVMPGLLQL  270 (339)
Q Consensus       230 ----~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~g~i~~L~~l  270 (339)
                          +.......++.+.+.++.....  +..|+.....++.......
T Consensus       605 ~~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~~n~i~e~~~k~  651 (678)
T KOG1293|consen  605 KKQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLKLNCIWELNNKL  651 (678)
T ss_pred             HHhhccHHHHHHHHHHHHHhccCCCCCcccchhhccccceechhhhc
Confidence                1234455667777777764322  2233333345555555444

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.68  E-value=1e-06  Score=79.44  Aligned_cols=236  Identities=13%  Similarity=0.143  Sum_probs=164.2

Q ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            5 LMDNLLN-GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         5 Lv~~L~s-~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      |...+++ .+.+.+..|+++|.-+...  +|..+...+++..++..+.+  .+-++|...+.++..|+. +|...+.+..
T Consensus       161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~  239 (442)
T KOG2759|consen  161 LKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKR  239 (442)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhh
Confidence            3344454 5677788899999998885  99999999999999988743  267899999999999999 7888888878


Q ss_pred             cCChHHHHHhhcCCCh-hHHHHHHHHHHHHhcCccc---hH----HHHhcchHHHHHHHhcC-CCCCCCCc---------
Q 048113           80 SGIVPVLLEVLQCQST-TLIELTVAAMLILSSCLEN---KL----EIASSGAIQRLVEILNG-DLADDDNS---------  141 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~---~~----~i~~~g~i~~Lv~ll~~-~~~~~~~~---------  141 (339)
                      .+.|+.|..+++.... .+....+.++.|+....+.   +.    .+... .+++-++.|.. .-+|+|..         
T Consensus       240 ~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L~e~  318 (442)
T KOG2759|consen  240 FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFLTEK  318 (442)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            8999999999998764 4777888999999865432   22    22233 45566665543 32222210         


Q ss_pred             -------cCCCCHHHHHHHHHHH-HhhcCCC---------CChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113          142 -------YGRISVQAKIDAIATL-HNLSTCH---------QLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       142 -------~~~~~~~~~~~a~~~L-~nLs~~~---------~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n  202 (339)
                             .+|-+    +...... ..|.=+|         +|...+-+.  ..+..|+++|+..+ ++.+.--|+.=++.
T Consensus       319 L~~svq~LsSFD----eY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~DIge  393 (442)
T KOG2759|consen  319 LKNSVQDLSSFD----EYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHDIGE  393 (442)
T ss_pred             HHHHHHhhccHH----HHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhhHHH
Confidence                   00000    0011111 1111111         334445444  47889999998865 34555555544554


Q ss_pred             hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      .+-..|+++..+.+ .|+=+.+.+++.+.++.++.+|+.++..+..
T Consensus       394 ~Vr~yP~gk~vv~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  394 YVRHYPEGKAVVEK-YGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHhCchHhHHHHH-hchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            77788999988887 8999999999999999999999999877654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.66  E-value=4.2e-07  Score=69.37  Aligned_cols=129  Identities=15%  Similarity=0.164  Sum_probs=109.2

Q ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            4 MLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         4 ~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      .||+-.. ..+.+.+.....-|.|++-+  +...+.+.+++..++.-|...+..+.+-++..|+|+|- ++.|...|.++
T Consensus        20 ~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea   98 (173)
T KOG4646|consen   20 HLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREA   98 (173)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHh
Confidence            3455554 46888899999999999988  89999999999999999999999999999999999999 79999999999


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcC
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNG  133 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~  133 (339)
                      +++|.++..+.++...+...++.++..|+..+. .++.+.....+..+.++-.+
T Consensus        99 ~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s  152 (173)
T KOG4646|consen   99 LGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRES  152 (173)
T ss_pred             cCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHH
Confidence            999999999999999999999999999987554 47777666655555555433

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.62  E-value=3.2e-07  Score=70.00  Aligned_cols=121  Identities=16%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             hHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113           41 IAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA  119 (339)
Q Consensus        41 i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  119 (339)
                      +..|+. +=...+.+.++....-|.|++. +|.|...+.+.+++..++..|..++..+++.+...|+|++.+..++..|.
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~   96 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR   96 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence            344443 3334588899999999999999 79999999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhc
Q 048113          120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSS  173 (339)
Q Consensus       120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~  173 (339)
                      +.+++|.++..+.+           ....+...|+.++..|+.. ...+..+...
T Consensus        97 ea~g~plii~~lss-----------p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p  140 (173)
T KOG4646|consen   97 EALGLPLIIFVLSS-----------PPEITVHSAALFLQLLEFGERTERDELLSP  140 (173)
T ss_pred             HhcCCceEEeecCC-----------ChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence            99999999999988           6788888999999999884 4556666543

>PTZ00429 beta-adaptin; Provisional

Probab=98.60  E-value=5e-05  Score=75.82  Aligned_cols=178  Identities=15%  Similarity=0.076  Sum_probs=107.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.+.+.|.+.++.+|..|+-++.++-......+.+.|.++.|.++|.+.++.++.+|+.+|..+...++. +. -...+.
T Consensus       143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l-~l~~~~  220 (746)
T PTZ00429        143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KI-ESSNEW  220 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hh-HHHHHH
Confidence            4456666777888888888888777655445555677778888888888888888888888888764332 11 122344


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      +..|+..|...++-.+...+.+|....  +.....  ....+..+...|++           .++.+...|++++.++..
T Consensus       221 ~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~-----------~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        221 VNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSH-----------QNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhcC
Confidence            566666665555555555555553321  111111  12467777777777           789999999999999875


Q ss_pred             CCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          163 CHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       163 ~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ..+ ...+-..  ...++++.++.+   +.+++-.++..+.
T Consensus       286 ~~~-~~~~~~~~~rl~~pLv~L~ss---~~eiqyvaLr~I~  322 (746)
T PTZ00429        286 RCS-QELIERCTVRVNTALLTLSRR---DAETQYIVCKNIH  322 (746)
T ss_pred             cCC-HHHHHHHHHHHHHHHHHhhCC---CccHHHHHHHHHH
Confidence            421 1111111  123455666433   3456666665544

>PF05536 Neurochondrin: Neurochondrin

Probab=98.49  E-value=2.6e-05  Score=75.48  Aligned_cols=237  Identities=19%  Similarity=0.144  Sum_probs=161.4

Q ss_pred             ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch---hhHHhhcCChHHHHHhhcCC-------ChhHHHHHHHHHHHHh
Q 048113           40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERN---KIRIVKSGIVPVLLEVLQCQ-------STTLIELTVAAMLILS  109 (339)
Q Consensus        40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~---~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nLs  109 (339)
                      .+...+.+|++.+.+-+-.++-.+.++..+++..   +..+.++=+.+.|-++|.++       ....+..|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4667788999988788889999999999965533   45688887788899999873       3557888999999999


Q ss_pred             cCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC
Q 048113          110 SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       110 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                      .+++....-.=.+-||.|+..+.+.          .+..+...++.+|..++..+++++.+++.|+++.|++.+.+.   
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~----------s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~---  152 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSS----------SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ---  152 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC---
Confidence            8665432222246799999999883          335899999999999999999999999999999999999873   


Q ss_pred             chHHHHHHHHHHHhhcCCHh-h---hHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchh----HHHHHHhc
Q 048113          190 SGLTEKAIALLENIVSSSED-A---LQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDK----YRSSILKE  261 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~-~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~  261 (339)
                      +...+.|+.++.+.++.... .   .....  ...++.+-..+.......+-..+..|..+-...+..    ....-+-.
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~  230 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS  230 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence            56688888888854443321 1   11111  134455555555555566677777777775543210    01111122


Q ss_pred             CChHHHHHhhhcC-CHHHHHHHHHHHHHHhc
Q 048113          262 GVMPGLLQLSVDG-TWRAKNMARDLLLLLRD  291 (339)
Q Consensus       262 g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~  291 (339)
                      .+...+..++++. ++.-|..|..+...+.+
T Consensus       231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3444455555553 55556666665555543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.49  E-value=1.6e-05  Score=75.26  Aligned_cols=269  Identities=16%  Similarity=0.176  Sum_probs=176.4

Q ss_pred             HHHHHHHHHH--HHHHHHhcCChHHHHHHh----------ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113           21 ANELGKLSRR--QKHKLVERGIIAPLISML----------CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE   88 (339)
Q Consensus        21 ~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~   88 (339)
                      +.+|+-++++  +...+....++..|.++-          ...++++...|+++|+|+-..++..|+.+.+.|+.+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            5667777776  666666666677777654          2347899999999999999999999999999999999999


Q ss_pred             hhcCC-----ChhHHHHHHHHHHHHhcCc-cchHHHH-hcchHHHHHHHhcCCCC--CCCCc----cCCCCHHHHHHHHH
Q 048113           89 VLQCQ-----STTLIELTVAAMLILSSCL-ENKLEIA-SSGAIQRLVEILNGDLA--DDDNS----YGRISVQAKIDAIA  155 (339)
Q Consensus        89 lL~~~-----~~~~~~~a~~~L~nLs~~~-~~~~~i~-~~g~i~~Lv~ll~~~~~--~~~~~----~~~~~~~~~~~a~~  155 (339)
                      .|+..     +.++.-...+.|+-++... ..+..++ +.+++..++..+.....  +....    -+..+......+++
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK  161 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK  161 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence            99876     6788888999998888543 4455555 55788888776654311  11100    12246677788999


Q ss_pred             HHHhhcCCCCChHHHHhcCcHHHHHHHhhcc-------ccCchHHHHHHHHHHHhhcCCHhhhHHH-------------H
Q 048113          156 TLHNLSTCHQLISPIVSSGVTYCLLQLIHSS-------EKSSGLTEKAIALLENIVSSSEDALQEI-------------A  215 (339)
Q Consensus       156 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~~~a~~~L~n~l~~~~~~~~~i-------------~  215 (339)
                      ++.|+.........--..+.++.|+.++...       .+......+++.+|. ++...  ....+             .
T Consensus       162 llFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~-nlpl~--~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  162 LLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALL-NLPLE--CLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHh-CCChH--HHhhhhcccCCcccccCCC
Confidence            9999976433222211224556666555432       123455667777777 44221  11110             0


Q ss_pred             hhCCcHHHHHHHhhcC----C--h--HHHHHHHHHHHHhhccCchhHHHHHHh----------------cCChHHHHHhh
Q 048113          216 ATCGAIRALVETIEEG----S--P--QCKEHAVAILLLICKSCRDKYRSSILK----------------EGVMPGLLQLS  271 (339)
Q Consensus       216 ~~~g~i~~Lv~lL~~~----~--~--~~~~~a~~~L~~l~~~~~~~~~~~~~~----------------~g~i~~L~~ll  271 (339)
                      ....++..|+++|+..    .  .  ..-.-.+.+|.+++..+. ..|+.+..                ...-..|++++
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm  317 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM  317 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence            1134678888888641    1  1  233445667777776643 25554443                23555688998


Q ss_pred             hcCCHHHHHHHHHHHHHHhccC
Q 048113          272 VDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       272 ~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      .+..+.++..+...|..|++.+
T Consensus       318 t~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  318 TSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CCCCchHHHHHHHHHHHHHhhh
Confidence            8888999999999999987643

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PTZ00429 beta-adaptin; Provisional

Probab=98.44  E-value=0.00026  Score=70.77  Aligned_cols=250  Identities=14%  Similarity=0.057  Sum_probs=171.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            4 MLMDNLLNGERETQIQAANELGK-LSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~-l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      .|-..|.+.+...+..|++-+-. .+.+.    --....+.+++++.+++.+++.-..-.+.+.+..+++...     -+
T Consensus        36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----La  106 (746)
T PTZ00429         36 ELQNDLNGTDSYRKKAAVKRIIANMTMGR----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LA  106 (746)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHCCC----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HH
Confidence            35567777777777776664433 33220    0033556677888899999999998888888885444321     24


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      +..+.+=+.++++.+|..|+++|+++-..+-.      .-.++.+.+.+.+           .++-+|+.|+.++..+-.
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~------e~l~~~lkk~L~D-----------~~pYVRKtAalai~Kly~  169 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIRVSSVL------EYTLEPLRRAVAD-----------PDPYVRKTAAMGLGKLFH  169 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHH------HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHh
Confidence            56677888888999999999999876542211      1246667777777           799999999999999865


Q ss_pred             CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 048113          163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAI  242 (339)
Q Consensus       163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~  242 (339)
                      ...  ..+.+.|.++.|.++|.+.  +..+..+|+.+|. .+.......-.+.  .+.+..|+..+..-++..|-..+.+
T Consensus       170 ~~p--elv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~-eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~l  242 (746)
T PTZ00429        170 DDM--QLFYQQDFKKDLVELLNDN--NPVVASNAAAIVC-EVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILEL  242 (746)
T ss_pred             hCc--ccccccchHHHHHHHhcCC--CccHHHHHHHHHH-HHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHH
Confidence            322  2344568889999998864  5788999999999 4543322222222  3567778888877788888877777


Q ss_pred             HHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          243 LLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       243 L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      |....   +... ..  ....+..+...+++.++.+...|+.++..+...
T Consensus       243 L~~y~---P~~~-~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        243 LAAQR---PSDK-ES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHhcC---CCCc-HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            65432   2211 11  124677778888889999999999988888654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=0.00032  Score=61.82  Aligned_cols=271  Identities=17%  Similarity=0.169  Sum_probs=189.2

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHH-------HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            9 LLNGERETQIQAANELGKLSRR-------QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         9 L~s~~~~~~~~a~~~L~~l~~~-------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      |..++..++.-|+..+..+..+       .-..++..|+.+.++......+.++...|...+..++. .+..-+.+.+..
T Consensus        91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSe  169 (524)
T KOG4413|consen   91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESE  169 (524)
T ss_pred             ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccc
Confidence            4466778888899988888765       22344578999999999999999999999999999999 788888888877


Q ss_pred             ChHHH--HHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           82 IVPVL--LEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        82 ~i~~L--v~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      ....+  ..+--..+.-.+-.....+..+.+ .+......-++|.+..|..=++..          .+.-++.+.+....
T Consensus       170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt----------eDtLVianciElvt  239 (524)
T KOG4413|consen  170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT----------EDTLVIANCIELVT  239 (524)
T ss_pred             cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC----------cceeehhhHHHHHH
Confidence            65443  223334455567777777777765 334455566788888888777664          68889999999999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC---HhhhHHHHhh-CCcHHHHHHHhhcCChH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS---EDALQEIAAT-CGAIRALVETIEEGSPQ  234 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~---~~~~~~i~~~-~g~i~~Lv~lL~~~~~~  234 (339)
                      .|...+.+++.+.+.|.|+.+..++...+.++--...++......+...   +..-+++++. --++..-.+++...++.
T Consensus       240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpd  319 (524)
T KOG4413|consen  240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPD  319 (524)
T ss_pred             HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCch
Confidence            9999999999999999999999999765433322334554444222211   1111222220 11344445666778899


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHhcC--ChHHHHHhhhcCCHHH-HHHHHHHHHHHhcc
Q 048113          235 CKEHAVAILLLICKSCRDKYRSSILKEG--VMPGLLQLSVDGTWRA-KNMARDLLLLLRDC  292 (339)
Q Consensus       235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~-~~~A~~~L~~l~~~  292 (339)
                      .++.|+.++..+.+.  .++.+.+...|  ....++.-..+.+... ++.+..+|.+++..
T Consensus       320 aieaAiDalGilGSn--teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage  378 (524)
T KOG4413|consen  320 AIEAAIDALGILGSN--TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE  378 (524)
T ss_pred             HHHHHHHHHHhccCC--cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence            999999999999866  34666666654  3444554445555555 57778899888764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.37  E-value=5.9e-07  Score=55.06  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=38.4

Q ss_pred             CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113           70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS  110 (339)
Q Consensus        70 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~  110 (339)
                      +++++..+++.|++|.|+.+|.++++++++.|+++|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=0.00021  Score=71.47  Aligned_cols=264  Identities=16%  Similarity=0.147  Sum_probs=182.0

Q ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            4 MLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         4 ~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      .++..|. .+++.++.-|+..+..++.+  +-..+.+.|++..|+.+|.+ -|..|+.++.+|..|+. +++--..-.++
T Consensus      1775 l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~h 1852 (2235)
T KOG1789|consen 1775 LLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEH 1852 (2235)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhc
Confidence            3455565 57888999999999988886  77888899999999999876 56789999999999999 67777777788


Q ss_pred             CChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccc--hHHH----------Hh--cchHHHHHHHhcCCC-----CCCC-
Q 048113           81 GIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLEN--KLEI----------AS--SGAIQRLVEILNGDL-----ADDD-  139 (339)
Q Consensus        81 g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~--~~~i----------~~--~g~i~~Lv~ll~~~~-----~~~~-  139 (339)
                      |++..+..++- +.++..+..++..+..+..+.-.  |..|          .+  .++-+..+.++...+     .|.+ 
T Consensus      1853 g~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1853 GGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred             CchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHh
Confidence            88777777654 45688889999999888754421  2110          00  111244444444321     0000 


Q ss_pred             ---------------------------C--------------------------------c------------------c
Q 048113          140 ---------------------------N--------------------------------S------------------Y  142 (339)
Q Consensus       140 ---------------------------~--------------------------------~------------------~  142 (339)
                                                 |                                +                  +
T Consensus      1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence                                       0                                0                  0


Q ss_pred             CCC--CHHHHHHHHHHHHhh-cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113          143 GRI--SVQAKIDAIATLHNL-STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCG  219 (339)
Q Consensus       143 ~~~--~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g  219 (339)
                      ...  .......-..++..| ...+...+.+-..|.+|.++..+...  ...+-..|+.+|. .++.+.-+...+.. ..
T Consensus      2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~--n~s~P~SaiRVlH-~Lsen~~C~~AMA~-l~ 2088 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ--NTSAPRSAIRVLH-ELSENQFCCDAMAQ-LP 2088 (2235)
T ss_pred             cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc--CCcCcHHHHHHHH-HHhhccHHHHHHhc-cc
Confidence            101  111111122223333 44677788888889999999998653  2445578999999 89988888888887 67


Q ss_pred             cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113          220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG  274 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~  274 (339)
                      ++..++..++.. +.....|+.+|..+......+.-.+..+.|.+|.|++++...
T Consensus      2089 ~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             cchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            778888888764 334457888888887665555667778899999999998754

>TIGR02270 conserved hypothetical protein

Probab=98.32  E-value=0.00012  Score=68.25  Aligned_cols=220  Identities=15%  Similarity=0.053  Sum_probs=128.8

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +.++..|. ..+++++..++..+....        ...++..|+..|.+.++.++..++.+|+.+-.           .+
T Consensus        57 ~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~  117 (410)
T TIGR02270        57 ELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQ  117 (410)
T ss_pred             HHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hH
Confidence            45677774 566677666665552111        11137778888887777788888777764333           34


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      ..+.|+.+|.++++.++..++.++..           ......+.+..+|++           .++.++..|+.+|..+.
T Consensus       118 a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d-----------~d~~Vra~A~raLG~l~  175 (410)
T TIGR02270       118 AEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTH-----------EDALVRAAALRALGELP  175 (410)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcC-----------CCHHHHHHHHHHHHhhc
Confidence            55667777777777777666655544           111234566677766           67777777777777653


Q ss_pred             CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh---------------------hCCc
Q 048113          162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA---------------------TCGA  220 (339)
Q Consensus       162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~---------------------~~g~  220 (339)
                      ..          ..++.|...+.+.  ++.++..|+..+. .+ ..+.....+..                     ....
T Consensus       176 ~~----------~a~~~L~~al~d~--~~~VR~aA~~al~-~l-G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a  241 (410)
T TIGR02270       176 RR----------LSESTLRLYLRDS--DPEVRFAALEAGL-LA-GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDA  241 (410)
T ss_pred             cc----------cchHHHHHHHcCC--CHHHHHHHHHHHH-Hc-CCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhH
Confidence            21          2344555555553  4666666666665 33 22221111110                     0123


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       221 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ++.|..+++++.  ++..++.++..+-.            -..++.|++.+.+..  ++..|...+..++.-.
T Consensus       242 ~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       242 QAWLRELLQAAA--TRREALRAVGLVGD------------VEAAPWCLEAMREPP--WARLAGEAFSLITGMD  298 (410)
T ss_pred             HHHHHHHhcChh--hHHHHHHHHHHcCC------------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence            444555555422  55666666555432            136888888887543  8889999999987643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.31  E-value=0.00021  Score=69.32  Aligned_cols=247  Identities=16%  Similarity=0.104  Sum_probs=161.2

Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc----hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN----KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      .+...+.+|+..+++-+-.++..+.++...++.    +..|.+.=+.+-|-++|+.+...    -+.+....+..|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~----~~~~~~~~~~LavsvL   81 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVP----SDCPPEEYLSLAVSVL   81 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCC----CCCCHHHHHHHHHHHH
Confidence            356677888888877788888888888865542    34566665677788888774210    0113466788899999


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      ..+|..++....=-=.+-||.|++.+.+.+ +..+...|+.+|. .++.++++++.+.+ .|+++.|++.+.+ .+...+
T Consensus        82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~-~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E  157 (543)
T PF05536_consen   82 AAFCRDPELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLL-AIASSPEGAKALLE-SGAVPALCEIIPN-QSFQME  157 (543)
T ss_pred             HHHcCChhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHH-HHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHH
Confidence            999997776532222257999999998864 2488999999999 78899999999998 8999999999987 667789


Q ss_pred             HHHHHHHHhhccCchhHHHH-HHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCc---c-hhhhhhhHHHHHHH
Q 048113          238 HAVAILLLICKSCRDKYRSS-ILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFG---S-RSKQLKNELVEQIM  311 (339)
Q Consensus       238 ~a~~~L~~l~~~~~~~~~~~-~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~---~-~~~~~~~~~~~~i~  311 (339)
                      .|..++.+++...+.+.... -.. ...++.+.+.........+...+..|..+-...+..   . ....-.......+.
T Consensus       158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~  237 (543)
T PF05536_consen  158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR  237 (543)
T ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence            99999999887643211110 000 134555655555555555677778776665444211   0 11112223333322


Q ss_pred             HHHHhc-CcccchHHHHHHHHHHHHh
Q 048113          312 QEIDAE-GDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       312 ~~~~~~-~~~~~~~a~~~l~~~v~~~  336 (339)
                      ..+... +...|..|..+.+.++..+
T Consensus       238 ~iL~sr~~~~~R~~al~Laa~Ll~~~  263 (543)
T PF05536_consen  238 DILQSRLTPSQRDPALNLAASLLDLL  263 (543)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            222222 3445666777777776653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=0.00029  Score=62.04  Aligned_cols=230  Identities=13%  Similarity=0.133  Sum_probs=165.5

Q ss_pred             hccCCHHHHHHHHHHHHHhccCCcch----hhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcch
Q 048113           48 LCSQDYEAIEAALLSLLSLACGSERN----KIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGA  123 (339)
Q Consensus        48 L~~~~~~~~~~A~~~L~~Ls~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~  123 (339)
                      |..++..++.-+++.++.+-.+++.|    -..++.+|..+.++.++..++.++-..|...+..++..+..-+.|.++..
T Consensus        91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel  170 (524)
T KOG4413|consen   91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL  170 (524)
T ss_pred             ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence            44567788888888888777765543    33456889999999999999999999999999999999888888887776


Q ss_pred             HHHHH--HHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHH
Q 048113          124 IQRLV--EILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALL  200 (339)
Q Consensus       124 i~~Lv--~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L  200 (339)
                      ...+-  .+-..           .+.-.+......+..+.+ +++.....-..|.+..|..-|+..+ +.-++..|+...
T Consensus       171 lDdlhlrnlaak-----------cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte-DtLVianciElv  238 (524)
T KOG4413|consen  171 LDDLHLRNLAAK-----------CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELV  238 (524)
T ss_pred             CChHHHhHHHhh-----------hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHH
Confidence            65443  33333           355567777777777755 6777777777899999999998753 567788888888


Q ss_pred             HHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhcc------CchhHHHHHHhcCChHHHHHhhh
Q 048113          201 ENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKS------CRDKYRSSILKEGVMPGLLQLSV  272 (339)
Q Consensus       201 ~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~------~~~~~~~~~~~~g~i~~L~~ll~  272 (339)
                      . .+.....+++.+.+ .|.|+.+..++...  +|--+..+......+-..      +++..++.++-  ++..-.+++.
T Consensus       239 t-eLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiE  314 (524)
T KOG4413|consen  239 T-ELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIE  314 (524)
T ss_pred             H-HHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhh
Confidence            8 78888889988887 89999999988743  344444444333333211      11222222221  3444566778


Q ss_pred             cCCHHHHHHHHHHHHHHhccC
Q 048113          273 DGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       273 ~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ..++..++.|..++-.+-++.
T Consensus       315 mnDpdaieaAiDalGilGSnt  335 (524)
T KOG4413|consen  315 MNDPDAIEAAIDALGILGSNT  335 (524)
T ss_pred             cCCchHHHHHHHHHHhccCCc
Confidence            889999999999998886654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.22  E-value=3.6e-06  Score=51.55  Aligned_cols=41  Identities=27%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      +++++..+++ .|+++.|+++|+++++.+++.|+++|.||+.
T Consensus         1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            4678889997 9999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.00082  Score=61.45  Aligned_cols=259  Identities=14%  Similarity=0.076  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-----Ccch----hhHHhhcCChHHHHH
Q 048113           20 AANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG-----SERN----KIRIVKSGIVPVLLE   88 (339)
Q Consensus        20 a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-----~~~~----~~~i~~~g~i~~Lv~   88 (339)
                      ..+-+..++..  -...+++.++++.|+.+|.+.+.++.......|..|+..     +.+.    -..+++.++++.|+.
T Consensus       104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq  183 (536)
T KOG2734|consen  104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ  183 (536)
T ss_pred             HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence            34444445543  555789999999999999999999999999999999873     1222    335667789999999


Q ss_pred             hhcCCChh------HHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           89 VLQCQSTT------LIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        89 lL~~~~~~------~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      -+..-++.      -...+...+-|+...+ .....+++.|.+.-|++-+....         .-..-...|..+|.-+-
T Consensus       184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~---------~f~aNk~YasEiLaill  254 (536)
T KOG2734|consen  184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKA---------AFDANKQYASEILAILL  254 (536)
T ss_pred             HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhccc---------CcchhHHHHHHHHHHHh
Confidence            87654433      3456677788888644 45777778887777766444321         23345566778888776


Q ss_pred             C-CCCChHHHHhcCcHHHHHHHhhcc---c----cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113          162 T-CHQLISPIVSSGVTYCLLQLIHSS---E----KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP  233 (339)
Q Consensus       162 ~-~~~~~~~i~~~g~i~~Lv~ll~~~---~----~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  233 (339)
                      . +.+++.......++..+++-+.-+   +    +..++.++-..+|| .+...+.+|..++. ..+++-..-+++. ..
T Consensus       255 q~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLC-s~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk  331 (536)
T KOG2734|consen  255 QNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLC-SLLMAPANRERFLK-GEGLQLMNLMLRE-KK  331 (536)
T ss_pred             ccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHH-HHhcChhhhhhhhc-cccHHHHHHHHHH-HH
Confidence            6 456888888888999888776221   1    13567788889999 78889999999998 6777776666665 45


Q ss_pred             HHHHHHHHHHHHhhccCc-hhHHHHHHhcCChHHHHHh-hhcC--------CH-HHHHHHHHHHHHHh
Q 048113          234 QCKEHAVAILLLICKSCR-DKYRSSILKEGVMPGLLQL-SVDG--------TW-RAKNMARDLLLLLR  290 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~-~~~~~~~~~~g~i~~L~~l-l~~~--------~~-~~~~~A~~~L~~l~  290 (339)
                      ..+.-++.+|-.....+. ...+..+.+.+++..+..+ ++.+        ++ ..-+..+.+|+.+-
T Consensus       332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~  399 (536)
T KOG2734|consen  332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL  399 (536)
T ss_pred             HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence            556778888877766543 2377788888877777766 3222        22 23456666665543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.17  E-value=0.00053  Score=63.11  Aligned_cols=186  Identities=14%  Similarity=0.178  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHhccCCHH--HHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc-CCChhHHHHH
Q 048113           25 GKLSRRQKHKLVERGIIAPLISMLCSQDYE--AIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ-CQSTTLIELT  101 (339)
Q Consensus        25 ~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~--~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a  101 (339)
                      +.++....+.+...|++..|+.++.+++.+  ++..|.+.|..+..  .+|+..++..| ...++.+-+ ...++.....
T Consensus       166 ~evAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~  242 (832)
T KOG3678|consen  166 REVAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSV  242 (832)
T ss_pred             HHHHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHH
Confidence            334444566778899999999999988654  58899999999887  68999999887 444444433 3467888888


Q ss_pred             HHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHH
Q 048113          102 VAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYC  178 (339)
Q Consensus       102 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~  178 (339)
                      +.+|.++-. .++....+++.|++..++-.++.           .++.+..+++.+|.|...  ..+.++.|++..+-+-
T Consensus       243 ~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR-----------t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW  311 (832)
T KOG3678|consen  243 AGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR-----------TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW  311 (832)
T ss_pred             HHHHHHHhhhhHHHHHHHHhhcccchheeeccc-----------CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence            899999874 44557788899999999999988           789999999999999876  3577889999888888


Q ss_pred             HHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCc---HHHHHHHh
Q 048113          179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGA---IRALVETI  228 (339)
Q Consensus       179 Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~---i~~Lv~lL  228 (339)
                      |+.+-.+.  ++-++.+|+-+.+ .++.+.+.-..+.. .|-   +++++..+
T Consensus       312 LF~LA~sk--Del~R~~AClAV~-vlat~KE~E~~Vrk-S~TlaLVEPlva~~  360 (832)
T KOG3678|consen  312 LFPLAFSK--DELLRLHACLAVA-VLATNKEVEREVRK-SGTLALVEPLVASL  360 (832)
T ss_pred             hhhhhcch--HHHHHHHHHHHHh-hhhhhhhhhHHHhh-ccchhhhhhhhhcc
Confidence            88777664  4677888888888 77777666555544 453   34444444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00064  Score=63.88  Aligned_cols=264  Identities=13%  Similarity=0.082  Sum_probs=169.7

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH-hhcCChH
Q 048113            8 NLLNGERETQIQAANELGKLSRR-QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI-VKSGIVP   84 (339)
Q Consensus         8 ~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i-~~~g~i~   84 (339)
                      .+..-++..|.--+.-|..+-.. ....+.- ....+-|..+|+++++++|..+-.+|.++-.. -.+.... --...++
T Consensus       175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~  253 (675)
T KOG0212|consen  175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMIN  253 (675)
T ss_pred             HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchh
Confidence            33345778888777777666543 3333333 44566678999999999997665555554431 1222222 2346789


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH---HHHHhhc
Q 048113           85 VLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI---ATLHNLS  161 (339)
Q Consensus        85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~---~~L~nLs  161 (339)
                      .++..+.++++.++..|+..+..+..-.+..-...-+|.+..++..+.++          .....+..+.   ..|..+.
T Consensus       254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~----------e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT----------EEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC----------ccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888876555444444567677777776552          1112333222   1244444


Q ss_pred             CCCCChHHHHhc-CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          162 TCHQLISPIVSS-GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       162 ~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      ..+..+.. ++. ..++.+.+.+.+.  ..+.+..|+.-+. .+-....+.--.-. ....+.|+.-|.+++..+...++
T Consensus       324 s~~~~~~~-id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~-~l~~~~p~ql~~h~-~~if~tLL~tLsd~sd~vvl~~L  398 (675)
T KOG0212|consen  324 SSERLKEE-IDYGSIIEVLTKYLSDD--REETRIAVLNWII-LLYHKAPGQLLVHN-DSIFLTLLKTLSDRSDEVVLLAL  398 (675)
T ss_pred             hhhhhccc-cchHHHHHHHHHHhhcc--hHHHHHHHHHHHH-HHHhhCcchhhhhc-cHHHHHHHHhhcCchhHHHHHHH
Confidence            44443433 444 3566777777764  4677777885555 34333333333332 57889999999999999999999


Q ss_pred             HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      ..+.++|.++..  ...   -..+..|.++....+.-...++.-+++.++.-
T Consensus       399 ~lla~i~~s~~~--~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  399 SLLASICSSSNS--PNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHHhcCccc--ccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            999999987533  110   12456667777777777788888899888753

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=0.00097  Score=63.44  Aligned_cols=298  Identities=15%  Similarity=0.130  Sum_probs=188.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHH-HHHHHHHHhccCCcchhhHHhhc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIE-AALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~-~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      +-+.+++.+.....+..|+..+..+..+ .-..+.+.+.+..|-....+..+..++ .+..+....+.+-.    ...+.
T Consensus       137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EP  212 (569)
T KOG1242|consen  137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEP  212 (569)
T ss_pred             HHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence            4566677777888888888888888887 777777888888888888776544443 23333333333111    23344


Q ss_pred             CChHHHHHhh---cCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           81 GIVPVLLEVL---QCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        81 g~i~~Lv~lL---~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      +.+|.+-.++   .+..+.+|..|..+...+.. .+....    .-.+|.++.-+..           .....+..++..
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~-----------~kWrtK~aslel  277 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLE-----------AKWRTKMASLEL  277 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHH-----------HhhhhHHHHHHH
Confidence            5555554444   44567788877776655442 111111    1145555555544           466778889999


Q ss_pred             HHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          157 LHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       157 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      |..+.......-..+-..++|.+.+.|.++  ++++++.+..++. .++..-+|.. |.   -.+|.|++-+.+++.+..
T Consensus       278 lg~m~~~ap~qLs~~lp~iiP~lsevl~DT--~~evr~a~~~~l~-~~~svidN~d-I~---~~ip~Lld~l~dp~~~~~  350 (569)
T KOG1242|consen  278 LGAMADCAPKQLSLCLPDLIPVLSEVLWDT--KPEVRKAGIETLL-KFGSVIDNPD-IQ---KIIPTLLDALADPSCYTP  350 (569)
T ss_pred             HHHHHHhchHHHHHHHhHhhHHHHHHHccC--CHHHHHHHHHHHH-HHHHhhccHH-HH---HHHHHHHHHhcCcccchH
Confidence            999888777777777788999999999886  5899999998888 5555444443 32   267889998888664333


Q ss_pred             HHHHHHHHHhhc---cCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHH
Q 048113          237 EHAVAILLLICK---SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQE  313 (339)
Q Consensus       237 ~~a~~~L~~l~~---~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~  313 (339)
                      + +...|..=.+   -.++ ...     -.+|.|.+=+...+...+++++.+..|++.--+.   . +--..-+..++..
T Consensus       351 e-~~~~L~~ttFV~~V~~p-sLa-----lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD---p-~~lapfl~~Llp~  419 (569)
T KOG1242|consen  351 E-CLDSLGATTFVAEVDAP-SLA-----LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED---P-KDLAPFLPSLLPG  419 (569)
T ss_pred             H-HHHhhcceeeeeeecch-hHH-----HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC---H-HHHhhhHHHHhhH
Confidence            3 2222221111   1111 111     1345555556667788899999999999986532   1 1234445555555


Q ss_pred             HH---hcC-cccchHHHHHHHHHHHHhc
Q 048113          314 ID---AEG-DTVAGTTLRLVEEMIAKLS  337 (339)
Q Consensus       314 ~~---~~~-~~~~~~a~~~l~~~v~~~~  337 (339)
                      +.   .+- .++|..|.|.|..+++++.
T Consensus       420 lk~~~~d~~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  420 LKENLDDAVPEVRAVAARALGALLERLG  447 (569)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence            54   333 6678889999999988864

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.0025  Score=64.12  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113           16 TQIQAANELGKLSRRQK-------HKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL   87 (339)
Q Consensus        16 ~~~~a~~~L~~l~~~~~-------~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv   87 (339)
                      ...-++.+|+|+...+.       ....--|..+-+..++.. .++.++.-|+..+..++. +.+.-..++..|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence            44568888999877521       122235777777777765 588999999999999998 788888999999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113           88 EVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH  164 (339)
Q Consensus        88 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~  164 (339)
                      .+|.+. |..++.++.+|+.|+++...-..-.+.|++..+.+++-..          .++..+..|+..|..|..++
T Consensus      1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~----------~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT----------NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc----------CcHHHHHHHHHHHHHhhhcc
Confidence            999765 7789999999999999888766666888888888877553          68888889999998886543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=8.4e-05  Score=70.86  Aligned_cols=279  Identities=15%  Similarity=0.125  Sum_probs=168.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      +.++...++.++..|..|+.++-.+... ....+.. ...++.+-.+-.+.++++|.+.++++..|-.- ...|..=.-.
T Consensus       177 pkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~phl~  255 (885)
T KOG2023|consen  177 PKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVPHLD  255 (885)
T ss_pred             HHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhcccchH
Confidence            4566777899999999999998776544 4444443 33556666777778999999999999998873 3323222234


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh--cchHHHHHHHhcCC--------CCCCCC-------c--
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS--SGAIQRLVEILNGD--------LADDDN-------S--  141 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~--------~~~~~~-------~--  141 (339)
                      ++|+.++...+..++++-..|+.....++..+-++..+..  ...||.|++=+.-.        +.++|.       +  
T Consensus       256 ~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIk  335 (885)
T KOG2023|consen  256 NIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIK  335 (885)
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhcc
Confidence            7788888888888999999999999999988866665542  23455554322111        011110       0  


Q ss_pred             --------cCC--------------------CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC--ch
Q 048113          142 --------YGR--------------------ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS--SG  191 (339)
Q Consensus       142 --------~~~--------------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~--~~  191 (339)
                              .+.                    .+...|+.++.+|--|+.       +.....++.++.+|+..-.+  =.
T Consensus       336 PRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~  408 (885)
T KOG2023|consen  336 PRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWK  408 (885)
T ss_pred             chhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhh
Confidence                    000                    012344444444433322       22223566666666553222  34


Q ss_pred             HHHHHHHHHHHhhcCCHhhhHHHHhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh
Q 048113          192 LTEKAIALLENIVSSSEDALQEIAAT-CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL  270 (339)
Q Consensus       192 ~~~~a~~~L~n~l~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l  270 (339)
                      +++.+.-+|+ .++..  +-.-++.+ ...+|-|+++|.+..+.++.-.+|.|...+..--..-+.... ..++..|.+.
T Consensus       409 vrEagvLAlG-AIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ll~~  484 (885)
T KOG2023|consen  409 VREAGVLALG-AIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGLLRR  484 (885)
T ss_pred             hhhhhHHHHH-HHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHHHHH
Confidence            5666666666 33221  11111110 135778888998888999999999998776431111111111 1245556666


Q ss_pred             hhcCCHHHHHHHHHHHHHHhccC
Q 048113          271 SVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       271 l~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      +.+++.++|+.|+.+..-+-...
T Consensus       485 llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  485 LLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HhcccHHHHHHHHHHHHHHHHhc
Confidence            77899999999999988886543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0032  Score=60.93  Aligned_cols=252  Identities=13%  Similarity=0.165  Sum_probs=169.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV   83 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i   83 (339)
                      -++-+|.++-+.+|.+|+-.+..+...+.+++  ...+|.|++-|.++||.++..|..+++.|++.+|.|...+     -
T Consensus       148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----A  220 (877)
T KOG1059|consen  148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----A  220 (877)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----c
Confidence            35778899999999999999988887655544  3468999999999999999999999999999999887554     4


Q ss_pred             HHHHHhhcCCC-hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh--
Q 048113           84 PVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL--  160 (339)
Q Consensus        84 ~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL--  160 (339)
                      |.+.+++...+ .=+....+....+|+--++-   ++ ...+++|..++.++          .-..+...++.++..-  
T Consensus       221 P~ffkllttSsNNWmLIKiiKLF~aLtplEPR---Lg-KKLieplt~li~sT----------~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  221 PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR---LG-KKLIEPITELMEST----------VAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             HHHHHHHhccCCCeehHHHHHHHhhccccCch---hh-hhhhhHHHHHHHhh----------HHHHHHHHHHHHheeehh
Confidence            78888876653 33455556677777755542   11 22689999999884          3344555555555433  


Q ss_pred             cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      +....+...-++ -+++.|-.++.+.  +..++--++-++.-.+-.++....+      --+.+++.|.+.++.++-.|+
T Consensus       287 s~g~~d~~asiq-LCvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~Vqa------~kdlIlrcL~DkD~SIRlrAL  357 (877)
T KOG1059|consen  287 SSGMSDHSASIQ-LCVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKAVQA------HKDLILRCLDDKDESIRLRAL  357 (877)
T ss_pred             ccCCCCcHHHHH-HHHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHHHHH------hHHHHHHHhccCCchhHHHHH
Confidence            222222322222 2577777778774  5788888887777344445543222      235678889999999999999


Q ss_pred             HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC-HHHH-HHHHHHHHHHhccC
Q 048113          241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT-WRAK-NMARDLLLLLRDCS  293 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~-~~A~~~L~~l~~~~  293 (339)
                      -.|.-+.... + .++      ++..|+..+...+ ..-+ +....++..++.++
T Consensus       358 dLl~gmVskk-N-l~e------IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn  404 (877)
T KOG1059|consen  358 DLLYGMVSKK-N-LME------IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN  404 (877)
T ss_pred             HHHHHHhhhh-h-HHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence            9998887542 1 222      4666766544333 3444 55555666666543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.08  E-value=2.1e-05  Score=56.84  Aligned_cols=87  Identities=22%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             hHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113           41 IAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA  119 (339)
Q Consensus        41 i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  119 (339)
                      |+.|++.| +++++.++..|+++|+.+-.  +         .++|.|+.+++++++.++..|+.+|..+          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRI----------G   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence            57899988 88899999999999985432  1         4589999999999999999999999876          2


Q ss_pred             hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113          120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus       120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      ....++.|.+++.++          .+..++..|+.+|.
T Consensus        60 ~~~~~~~L~~~l~~~----------~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDD----------DDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-----------SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCC----------CcHHHHHHHHhhcC
Confidence            455899999999884          56777888888874

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.00016  Score=67.70  Aligned_cols=228  Identities=18%  Similarity=0.162  Sum_probs=161.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HH-HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QK-HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+.+|.++.+++|.-+=-++.++..+  +. ..+.-...++.++.-+.++++.+|..|+.-+..+-. -+.......-
T Consensus       211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~-i~g~~~l~~~  289 (675)
T KOG0212|consen  211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK-IPGRDLLLYL  289 (675)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhc-CCCcchhhhh
Confidence            3578888889999997777777777665  22 223346688999999999999999999999988888 3444444445


Q ss_pred             cCChHHHHHhhcCCChh-HHHHHHH---HHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTT-LIELTVA---AMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~-~~~~a~~---~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      .|++..+++++.+..+. +++.+..   .+..+...+..++.+.=...++.|.+.+.+           +..+.+..++.
T Consensus       290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-----------~~~~tri~~L~  358 (675)
T KOG0212|consen  290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-----------DREETRIAVLN  358 (675)
T ss_pred             hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-----------chHHHHHHHHH
Confidence            68888888888877553 5554432   233344444444443334478899999988           78999999999


Q ss_pred             HHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113          156 TLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC  235 (339)
Q Consensus       156 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  235 (339)
                      -+..|-....+.-..-.....+.|++-|.+.  ++.+...++..++ .++.++....-    -.++..|+++.+......
T Consensus       359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla-~i~~s~~~~~~----~~fl~sLL~~f~e~~~~l  431 (675)
T KOG0212|consen  359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLA-SICSSSNSPNL----RKFLLSLLEMFKEDTKLL  431 (675)
T ss_pred             HHHHHHhhCcchhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHH-HHhcCcccccH----HHHHHHHHHHHhhhhHHH
Confidence            9888866555554444557888999999885  5789999999999 66666544311    135566777777766667


Q ss_pred             HHHHHHHHHHhhcc
Q 048113          236 KEHAVAILLLICKS  249 (339)
Q Consensus       236 ~~~a~~~L~~l~~~  249 (339)
                      ...+..++..+|..
T Consensus       432 ~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  432 EVRGNLIIRQLCLL  445 (675)
T ss_pred             HhhhhHHHHHHHHH
Confidence            77777788777753

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.05  E-value=0.0012  Score=62.64  Aligned_cols=238  Identities=17%  Similarity=0.137  Sum_probs=158.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCcchhhHHhhc-
Q 048113           10 LNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGSERNKIRIVKS-   80 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-   80 (339)
                      .+.++.+..+|+++|+|+.-.   .|..+.+.|..+.+++.|+..     +.++.-...+.|.-++...+..+..+++. 
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~  121 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH  121 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence            356889999999999998875   899999999999999999886     78889999999999998777788777765 


Q ss_pred             CChHHHHHhhcC-----------------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccC
Q 048113           81 GIVPVLLEVLQC-----------------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYG  143 (339)
Q Consensus        81 g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  143 (339)
                      +++..++..|..                 .+.+....++.+++|+....+....-...+.++.++.++..-.  ......
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l--~~~~~~  199 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL--PPPPSS  199 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHh--ccCCCC
Confidence            788877776632                 0234567788899999865543322123445666666554310  000001


Q ss_pred             CCCHHHHHHHHHHHHhhcCC-CCC-------hHH----HHhcCcHHHHHHHhhcc----cc--CchHHHHHHHHHHHhhc
Q 048113          144 RISVQAKIDAIATLHNLSTC-HQL-------ISP----IVSSGVTYCLLQLIHSS----EK--SSGLTEKAIALLENIVS  205 (339)
Q Consensus       144 ~~~~~~~~~a~~~L~nLs~~-~~~-------~~~----i~~~g~i~~Lv~ll~~~----~~--~~~~~~~a~~~L~n~l~  205 (339)
                      ........+++.+|.|+-.. .+.       ...    ......+..|+++|...    ..  ..+.....+.+|. .++
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~-~~~  278 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLT-RLA  278 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHH-HHH
Confidence            13456778899999988321 111       101    11224677777777542    11  1245666677777 444


Q ss_pred             CC-HhhhHHHHh---------------hCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113          206 SS-EDALQEIAA---------------TCGAIRALVETIEEGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       206 ~~-~~~~~~i~~---------------~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  250 (339)
                      .. ...|+.+..               ....-..|++++.+..+.++..+...|+.||..+
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            43 445544432               2345678899999888999999999999999664

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>TIGR02270 conserved hypothetical protein

Probab=98.05  E-value=0.0016  Score=60.96  Aligned_cols=153  Identities=18%  Similarity=0.113  Sum_probs=115.7

Q ss_pred             cCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113           38 RGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL  116 (339)
Q Consensus        38 ~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~  116 (339)
                      ..+++.++..|. .++++++..++.++.....  +         .++..|+..|.+.++.++..++.+|..         
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~---------  112 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGW---------  112 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhc---------
Confidence            457888999884 5677777766655532221  1         137899999999999899999888853         


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                       +...+..+.|+.++.+           .++.++..++.++...           .....+.+..+|++.  +..++..|
T Consensus       113 -i~~~~a~~~L~~~L~~-----------~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~--d~~Vra~A  167 (410)
T TIGR02270       113 -LGGRQAEPWLEPLLAA-----------SEPPGRAIGLAALGAH-----------RHDPGPALEAALTHE--DALVRAAA  167 (410)
T ss_pred             -CCchHHHHHHHHHhcC-----------CChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCC--CHHHHHHH
Confidence             4445678899999988           7999998888777761           123456888889864  67899999


Q ss_pred             HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                      +.+|+ .          +.. ...++.|...+.+.++.++..|+.++..+.
T Consensus       168 ~raLG-~----------l~~-~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       168 LRALG-E----------LPR-RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             HHHHH-h----------hcc-ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence            99999 3          223 567888899999999999999999887664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.02  E-value=0.0016  Score=60.12  Aligned_cols=237  Identities=15%  Similarity=0.076  Sum_probs=162.4

Q ss_pred             HHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHh
Q 048113           32 KHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILS  109 (339)
Q Consensus        32 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs  109 (339)
                      +..+.-....+.+..++=+++.+++..|.++++.+.. ++..-..+.+.+.--.++..|..+  +..-+++|+..+..+.
T Consensus        18 ~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l   96 (371)
T PF14664_consen   18 KYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFL   96 (371)
T ss_pred             hhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHH
Confidence            3333334445555544444559999999999999999 688888999988888888888765  3457889999998887


Q ss_pred             cCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC
Q 048113          110 SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       110 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                      ..+.+... ...|.+..++.+..+           .+...+..++.+|+.++..+.  ..+..+|++..|++.+.++  .
T Consensus        97 ~~~~~~~~-~~~~vvralvaiae~-----------~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~--~  160 (371)
T PF14664_consen   97 EIKKGPKE-IPRGVVRALVAIAEH-----------EDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDG--S  160 (371)
T ss_pred             HhcCCccc-CCHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhc--c
Confidence            65443222 356789999999988           688899999999999987433  4567889999999999874  2


Q ss_pred             chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-------Ch--HHHHHHHHHHHHhhc-cCchhHHHHHH
Q 048113          190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-------SP--QCKEHAVAILLLICK-SCRDKYRSSIL  259 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~~--~~~~~a~~~L~~l~~-~~~~~~~~~~~  259 (339)
                      .++.+..+.++- .+-.+|..|+.+.. .--++.++.-+.+.       +.  .....+..++..+-. .++  .-..-.
T Consensus       161 ~~~~~~l~~~lL-~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G--Ll~l~~  236 (371)
T PF14664_consen  161 FSISESLLDTLL-YLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG--LLYLSM  236 (371)
T ss_pred             HhHHHHHHHHHH-HHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc--eeeeec
Confidence            447788888888 78888888877764 23355555544332       11  123333444433322 211  111001


Q ss_pred             h-cCChHHHHHhhhcCCHHHHHHHHHHHHHH
Q 048113          260 K-EGVMPGLLQLSVDGTWRAKNMARDLLLLL  289 (339)
Q Consensus       260 ~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l  289 (339)
                      . ..++..|+..+..+++.+++.-..++.-+
T Consensus       237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             CCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            1 24677888888888888888888877555

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.94  E-value=0.00032  Score=60.52  Aligned_cols=176  Identities=17%  Similarity=0.139  Sum_probs=111.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHH-----HHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113           10 LNGERETQIQAANELGKLSRRQ-----KHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~~-----~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      .+.+|+.|..|+..|+.+..++     ...+.+  ...+..+...+.+....+...|+.++..++......-..+ -...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            5789999999999999998762     333332  3566777788888788899999999999998533322222 3357


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      +|.|++.+.++...++..|..+|..+...-.....+    ..+.+...+.+           .++.++..++..|..+..
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~-----------Kn~~vR~~~~~~l~~~l~  160 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS-----------KNPQVREECAEWLAIILE  160 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT------------S-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHH
Confidence            899999999998899999999999988754421211    25555566666           799999999999998865


Q ss_pred             -CCCChHHHHh----cCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113          163 -CHQLISPIVS----SGVTYCLLQLIHSSEKSSGLTEKAIALLENIV  204 (339)
Q Consensus       163 -~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l  204 (339)
                       .+.....+-.    ...++.+.+.+.+.  +++++..|-.++. .+
T Consensus       161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~-~l  204 (228)
T PF12348_consen  161 KWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLW-AL  204 (228)
T ss_dssp             T-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHH-HH
T ss_pred             HccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHH-HH
Confidence             3322222222    23566777777774  5889998888888 44

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00018  Score=67.06  Aligned_cols=200  Identities=11%  Similarity=0.123  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC
Q 048113           16 TQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC   92 (339)
Q Consensus        16 ~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~   92 (339)
                      .-..++.+|..+++.   -|.-+.+..+++.|++.|+.++..+.-.++..++|+......-+..+.+.|.+..|+.++.+
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            334566677777776   77788889999999999998776677778889999998777889999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CC---CC
Q 048113           93 QSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CH---QL  166 (339)
Q Consensus        93 ~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~---~~  166 (339)
                      .+..+|.+..|.+..+..+.++  +-.....-++.+++++...           ....++...+..|.|+.- ..   +.
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-----------pc~~vq~q~lQilrNftc~~~knEks  553 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-----------PCFKVQHQVLQILRNFTCDTSKNEKS  553 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-----------cccccHHHHHHHHHhccccccccccc
Confidence            9999999999999999976554  4455566779999999988           788999999999999943 22   33


Q ss_pred             hHHHHhcC----cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHh
Q 048113          167 ISPIVSSG----VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETI  228 (339)
Q Consensus       167 ~~~i~~~g----~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL  228 (339)
                      +..+.+..    ....|.+.+.... +..+.+. +.+|-++.+.++.-+..+..+...+..+-.+|
T Consensus       554 kdv~~K~~p~~ylfk~l~~k~e~~n-p~~i~~~-~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         554 KDVFIKATPRRYLFKRLIDKYEENN-PMEILEG-CYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             ceeEEecChHHHHHHHHHHHHHhcC-chhhhhh-HHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            44444332    4455666666542 2444444 55555355555555555554445555555544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.88  E-value=0.00011  Score=52.97  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             hHHHHHhh-cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           83 VPVLLEVL-QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        83 i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      ||.|++.| +++++.++..++.+|.++          .....++.|++++++           +++.++..|+.+|..+.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKD-----------EDPMVRRAAARALGRIG   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTS-----------SSHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhC
Confidence            57899988 778999999999998832          223569999999977           89999999999999872


Q ss_pred             CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                                ...+++.|.+++.+++ +..++..|..+|+
T Consensus        60 ----------~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ----------DPEAIPALIKLLQDDD-DEVVREAAAEALG   88 (88)
T ss_dssp             ----------HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence                      3358999999998853 4556788887764

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.87  E-value=0.0013  Score=57.79  Aligned_cols=228  Identities=14%  Similarity=0.077  Sum_probs=155.3

Q ss_pred             CHHHHHHHHHHHHHhccCCcchhhHHh-hcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhc-chHHHH
Q 048113           52 DYEAIEAALLSLLSLACGSERNKIRIV-KSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASS-GAIQRL  127 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~-~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~L  127 (339)
                      ++-.+.-|.+++.++.. .++.|..+- +...-..++..+++.  +.+++-+.+.+++.|+.++.+.+.|.+. +.+.-|
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            44567788999999999 677776544 455667788888764  5788999999999999988887766654 578888


Q ss_pred             HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCC-ChHHHHhcCcHHHHHHHhhcc-ccCchHHHHHH---HHHH
Q 048113          128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQ-LISPIVSSGVTYCLLQLIHSS-EKSSGLTEKAI---ALLE  201 (339)
Q Consensus       128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~-~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~---~~L~  201 (339)
                      +++.+..          ....+...++..+.|++. .+. ....+.-.|-+.+-++.|... ..+++++..--   ..|-
T Consensus       241 i~iVk~~----------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         241 IAIVKER----------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHH----------HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            8888773          467788889999999987 443 234444456566666666442 22344332211   1111


Q ss_pred             H------------------hhcCC---------HhhhHHHHh-hCCcHHHHHHHhhcCChH-HHHHHHHHHHHhhccCch
Q 048113          202 N------------------IVSSS---------EDALQEIAA-TCGAIRALVETIEEGSPQ-CKEHAVAILLLICKSCRD  252 (339)
Q Consensus       202 n------------------~l~~~---------~~~~~~i~~-~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~  252 (339)
                      +                  .+...         ..|..++.+ ....+..|.++++..++. .-..|+.-+..+....|+
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            0                  01111         122222222 123578888899886654 334566667777776655


Q ss_pred             hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          253 KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       253 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                       .+..+.+.|+-..++.++.+++++++..|..+++.+-.
T Consensus       391 -~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         391 -INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             -HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence             88999999999999999999999999999999987643

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0043  Score=60.43  Aligned_cols=298  Identities=13%  Similarity=0.088  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHH-hcc-CCHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHHHH
Q 048113           15 ETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISM-LCS-QDYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVLLE   88 (339)
Q Consensus        15 ~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~l-L~~-~~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~Lv~   88 (339)
                      ..+..++++|+-++.+ ....+.+  ..++..++.- .+. ++..+|-.|+.+|.+.-.-...| ....-..=.+...+.
T Consensus       145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE  224 (859)
T KOG1241|consen  145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE  224 (859)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence            4788899999999988 5544443  4466666653 333 37789999999997644311101 111222234566777


Q ss_pred             hhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC-C-
Q 048113           89 VLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-Q-  165 (339)
Q Consensus        89 lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~-~-  165 (339)
                      ..++++.+++..|..+|..+.+ ..+.-...........-+.-+++           .++++...++..=+++|..+ + 
T Consensus       225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-----------~~deValQaiEFWsticeEEiD~  293 (859)
T KOG1241|consen  225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-----------DNDEVALQAIEFWSTICEEEIDL  293 (859)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHHHHHHH
Confidence            7888899999999999999874 33333333344445555566667           78888888888777666421 1 


Q ss_pred             ---------------ChHHHHhc--CcHHHHHHHhhcccc-----CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113          166 ---------------LISPIVSS--GVTYCLLQLIHSSEK-----SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA  223 (339)
Q Consensus       166 ---------------~~~~i~~~--g~i~~Lv~ll~~~~~-----~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~  223 (339)
                                     ++.....+  +++|.|+++|...++     +=.....|..+|. +.+.       .+. ...+++
T Consensus       294 ~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~-l~A~-------~~~-D~Iv~~  364 (859)
T KOG1241|consen  294 AIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLM-LFAQ-------CVG-DDIVPH  364 (859)
T ss_pred             HHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHH-HHHH-------Hhc-ccchhh
Confidence                           11111121  678888888855211     1123344444444 3322       222 345555


Q ss_pred             HHHHh----hcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchh
Q 048113          224 LVETI----EEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRS  299 (339)
Q Consensus       224 Lv~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~  299 (339)
                      .+.++    ++++=+-++.|+.++..+-....+ .+-.-+..+++|.++.++.+++-.++..++|.+..++++-++....
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~-~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n  443 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEP-DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIIN  443 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch-hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhccc
Confidence            55555    455666778888888887766433 4444456789999999999888889999999999998876422111


Q ss_pred             hhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          300 KQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       300 ~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      ...-...+.-++..+ -|...++.++-..+-++++
T Consensus       444 ~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  444 QELLQSKLSALLEGL-NDEPRVASNVCWAFISLAE  477 (859)
T ss_pred             HhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHH
Confidence            111122222222221 2334455565555555543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.85  E-value=0.004  Score=56.98  Aligned_cols=194  Identities=21%  Similarity=0.243  Sum_probs=129.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.++..+.+.++.+|..|+..+..+.        ....++.+..++.+.++.+|..|+.+|+.+-.           ...
T Consensus        46 ~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-----------~~a  106 (335)
T COG1413          46 DELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-----------PEA  106 (335)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----------hhH
Confidence            56777888888888888888865554        45678899999999999999999997776655           236


Q ss_pred             hHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCc-cCCCCHHHHHHHHHHHHhh
Q 048113           83 VPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNS-YGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        83 i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~-~~~~~~~~~~~a~~~L~nL  160 (339)
                      ++.|+..+. +++..++..+.++|..+-.          ...+.+++..++....+..-. +......++..+...|..+
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~  176 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL  176 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc
Confidence            788999998 4788899999999876543          234778888887621000000 0000013444444444443


Q ss_pred             cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      -          +.-.++.+...+.+.  ...++..+..+|+ .+....         ....+.+...+.+++..++..++
T Consensus       177 ~----------~~~~~~~l~~~l~~~--~~~vr~~Aa~aL~-~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~  234 (335)
T COG1413         177 G----------DPEAIPLLIELLEDE--DADVRRAAASALG-QLGSEN---------VEAADLLVKALSDESLEVRKAAL  234 (335)
T ss_pred             C----------ChhhhHHHHHHHhCc--hHHHHHHHHHHHH-Hhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence            1          123577888888875  3578888888888 433332         14557777788888888887777


Q ss_pred             HHHHHhh
Q 048113          241 AILLLIC  247 (339)
Q Consensus       241 ~~L~~l~  247 (339)
                      .+|..+-
T Consensus       235 ~~l~~~~  241 (335)
T COG1413         235 LALGEIG  241 (335)
T ss_pred             HHhcccC
Confidence            7766653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.00052  Score=64.66  Aligned_cols=263  Identities=16%  Similarity=0.127  Sum_probs=140.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQ-KHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +.|-.+|.+..+.+..++++.+..++..+ ...+. ...+..|-.+|++.....|-.|+++|..|+...|+ +-..+.  
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~vcN--  342 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVSVCN--  342 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eeeecC--
Confidence            55667777778899999999999988762 22222 23567788899999999999999999999984332 222211  


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                        +-+-.++.+.+..+-..|..+|..--..+.. ..     .+..+..++..           -+...+.-++.++..||
T Consensus       343 --~evEsLIsd~Nr~IstyAITtLLKTGt~e~i-dr-----Lv~~I~sfvhD-----------~SD~FKiI~ida~rsLs  403 (898)
T COG5240         343 --KEVESLISDENRTISTYAITTLLKTGTEETI-DR-----LVNLIPSFVHD-----------MSDGFKIIAIDALRSLS  403 (898)
T ss_pred             --hhHHHHhhcccccchHHHHHHHHHcCchhhH-HH-----HHHHHHHHHHh-----------hccCceEEeHHHHHHHH
Confidence              2233344444545555555555432221111 10     12222223322           22233333444444444


Q ss_pred             C-CCCChH--------HHHhcCc-------HHHHHHHhhccccCchHHHHHHHHHHHhhcCC--HhhhHHHHh---hC--
Q 048113          162 T-CHQLIS--------PIVSSGV-------TYCLLQLIHSSEKSSGLTEKAIALLENIVSSS--EDALQEIAA---TC--  218 (339)
Q Consensus       162 ~-~~~~~~--------~i~~~g~-------i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~--~~~~~~i~~---~~--  218 (339)
                      . .+.-+.        .+.+.|+       ++.+.+++..   .++.++.|+..||..+-.+  ++....+..   ++  
T Consensus       404 l~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP  480 (898)
T COG5240         404 LLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP  480 (898)
T ss_pred             hhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC
Confidence            3 222111        1222332       3445555544   2455666666666221111  111111110   01  


Q ss_pred             ------CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          219 ------GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       219 ------g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                            .++..+..-+--.+.-++..|+.||..++-.-..    ......+...|.+.+.+.++.++.+|.-.|+++...
T Consensus       481 ~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d----~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         481 RAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD----VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             CCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc----cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence                  1223333222223456778888898777654322    122223455667778899999999999999999765


Q ss_pred             CCC
Q 048113          293 SSF  295 (339)
Q Consensus       293 ~~~  295 (339)
                      ..+
T Consensus       557 da~  559 (898)
T COG5240         557 DAC  559 (898)
T ss_pred             hhh
Confidence            443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.0026  Score=61.60  Aligned_cols=240  Identities=17%  Similarity=0.140  Sum_probs=146.0

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHH
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIA  119 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~  119 (339)
                      -+.++.+|++..|-+|..|.-.|..+....|+.-     .-.+|.|+.-|..+++.++..|+..++.|+. ++.+.-   
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence            3455667777777777777777776665433321     1245777777888888888888888888875 333321   


Q ss_pred             hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113          120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA  198 (339)
Q Consensus       120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~  198 (339)
                        ..-|.+.+++...          .+-=+....+..+.+|+- .|...+.     .+++|..++.++. -..+.-.|+.
T Consensus       218 --~LAP~ffkllttS----------sNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~-AmSLlYECvN  279 (877)
T KOG1059|consen  218 --QLAPLFYKLLVTS----------SNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTV-AMSLLYECVN  279 (877)
T ss_pred             --cccHHHHHHHhcc----------CCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhH-HHHHHHHHHH
Confidence              1356666766553          333355556666777765 3443333     4677888887753 2344444443


Q ss_pred             HHH--HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH
Q 048113          199 LLE--NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW  276 (339)
Q Consensus       199 ~L~--n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  276 (339)
                      ++-  |..+..+++-..+.   =+++.|-.++.+.++..+..++-++..+....+..    +..  .-..+++.+.+.++
T Consensus       280 TVVa~s~s~g~~d~~asiq---LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----Vqa--~kdlIlrcL~DkD~  350 (877)
T KOG1059|consen  280 TVVAVSMSSGMSDHSASIQ---LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----VQA--HKDLILRCLDDKDE  350 (877)
T ss_pred             HheeehhccCCCCcHHHHH---HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----HHH--hHHHHHHHhccCCc
Confidence            322  11122222222222   26788888888889999999999999988664331    111  23456677889999


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccch
Q 048113          277 RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAG  323 (339)
Q Consensus       277 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~  323 (339)
                      .+|.+|..+|.-+.+-.+    -    .+++..+|..+. .+|+..+.
T Consensus       351 SIRlrALdLl~gmVskkN----l----~eIVk~LM~~~~~ae~t~yrd  390 (877)
T KOG1059|consen  351 SIRLRALDLLYGMVSKKN----L----MEIVKTLMKHVEKAEGTNYRD  390 (877)
T ss_pred             hhHHHHHHHHHHHhhhhh----H----HHHHHHHHHHHHhccchhHHH
Confidence            999999999987765432    1    345555555554 45644443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=3.2e-05  Score=71.99  Aligned_cols=267  Identities=13%  Similarity=0.142  Sum_probs=171.5

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch-hhHH
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN-KIRI   77 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~~i   77 (339)
                      -|.|++.|..++-.+.-.+...++|+.-.   -+..|.+.|.|..|++++.+.|..+|.+..|.|+++-.++..+ +-.+
T Consensus       433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~  512 (743)
T COG5369         433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF  512 (743)
T ss_pred             HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence            46788888776666666788888887654   8889999999999999999999999999999999999965554 4567


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc----chHHHHhcc----hHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE----NKLEIASSG----AIQRLVEILNGDLADDDNSYGRISVQA  149 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g----~i~~Lv~ll~~~~~~~~~~~~~~~~~~  149 (339)
                      ...-++..++.+.+.+.-.+++.....|.|+.++..    .+....+..    ..+.|++.+..           .++-.
T Consensus       513 Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~-----------~np~~  581 (743)
T COG5369         513 LAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE-----------NNPME  581 (743)
T ss_pred             HHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh-----------cCchh
Confidence            777889999999999999999999999999987332    233222222    45566666666           67767


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHh-c-CcHHHHHHHhhcccc---------CchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113          150 KIDAIATLHNLSTCHQLISPIVS-S-GVTYCLLQLIHSSEK---------SSGLTEKAIALLENIVSSSEDALQEIAATC  218 (339)
Q Consensus       150 ~~~a~~~L~nLs~~~~~~~~i~~-~-g~i~~Lv~ll~~~~~---------~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~  218 (339)
                      ....+..|.+++..+++.+.++. . ..+..+...|.....         ++.+...-..+.- ++..+          +
T Consensus       582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v-~l~e~----------~  650 (743)
T COG5369         582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV-NLSEN----------S  650 (743)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee-ccccc----------c
Confidence            77778888888887766655543 3 555555555532110         0111111111111 11111          1


Q ss_pred             CcHHHHHH------Hhhc----CChHHHHHHHHHHHHhhcc---Cc----hhHH-HHHHhcCChHHHHHhhhcCCHHHHH
Q 048113          219 GAIRALVE------TIEE----GSPQCKEHAVAILLLICKS---CR----DKYR-SSILKEGVMPGLLQLSVDGTWRAKN  280 (339)
Q Consensus       219 g~i~~Lv~------lL~~----~~~~~~~~a~~~L~~l~~~---~~----~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~  280 (339)
                      |....++.      ..+.    ++.+..-...|.+.|+.-.   ..    ..-| +.+.+.|.-..|+++..+.++.+++
T Consensus       651 d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vre  730 (743)
T COG5369         651 DKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVRE  730 (743)
T ss_pred             cccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHH
Confidence            22222221      1121    2233444455555554211   00    0112 2345567777888888888999999


Q ss_pred             HHHHHHHHHh
Q 048113          281 MARDLLLLLR  290 (339)
Q Consensus       281 ~A~~~L~~l~  290 (339)
                      ++-.+|.++.
T Consensus       731 k~~taL~~l~  740 (743)
T COG5369         731 KIGTALENLR  740 (743)
T ss_pred             HHHHHHHhhh
Confidence            9999998874

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.83  E-value=0.0007  Score=59.44  Aligned_cols=243  Identities=12%  Similarity=0.070  Sum_probs=157.1

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHH-hcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhH
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR--QKHKLV-ERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~-~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      +|+|-.++++-++-.+.-|++++.++...  .|+.+- +...-..+++.++..  +.++|.+++-++..|+. ++...+.
T Consensus       151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd  229 (432)
T COG5231         151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD  229 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence            45666666777888899999999999876  665544 455777888888764  67999999999999999 5666544


Q ss_pred             Hhhc-CChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcC-CCCCCCCc----------
Q 048113           77 IVKS-GIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNG-DLADDDNS----------  141 (339)
Q Consensus        77 i~~~-g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~----------  141 (339)
                      +-+- +.+.-|+.+..... ..+...++.++.|+..-.+  .-....-.|-+.+-+++|.. +-+|++..          
T Consensus       230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l  309 (432)
T COG5231         230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL  309 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            4433 56777788777654 3477788899999887222  11112223335556665543 32111100          


Q ss_pred             -cCCCCHHHH-HHHHHHHH-hhcCCC---------CChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113          142 -YGRISVQAK-IDAIATLH-NLSTCH---------QLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS  207 (339)
Q Consensus       142 -~~~~~~~~~-~~a~~~L~-nLs~~~---------~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~  207 (339)
                       .++..-... ..-...-. -|+-+|         .|.+.+.+.  .++..|.+++++..++.-+..+|-.+.+ .+...
T Consensus       310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~-~Vr~~  388 (432)
T COG5231         310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQ-LVRAS  388 (432)
T ss_pred             HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHH-HHHhC
Confidence             000000000 00000000 111111         234444443  5788999999987655455666666666 77888


Q ss_pred             HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                      |+.+..+.. .|+-+.+.+++.+++++++-.|+.++..+.
T Consensus       389 PE~~~vl~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         389 PEINAVLSK-YGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             chHHHHHHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999988887 899999999999999999999999987654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.003  Score=61.49  Aligned_cols=295  Identities=16%  Similarity=0.127  Sum_probs=178.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh-hcC
Q 048113            6 MDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV-KSG   81 (339)
Q Consensus         6 v~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~-~~g   81 (339)
                      -..++++||..|..|+.++..+..+   .+..-.-.+++|.++.++.+++..++..++|+++.++.+.++.+-.-. ..+
T Consensus       370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~  449 (859)
T KOG1241|consen  370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS  449 (859)
T ss_pred             HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence            3478899999999999999999887   444445688999999999988888999999999999997664332222 124


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhc--CccchHH----HHh---cchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLE----IAS---SGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~----i~~---~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      .++.++.-|.+ .|.+-.+++|++.+|+.  .+.....    ...   ...|..|++.-...+.        .....|..
T Consensus       450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg--------nqsNLR~A  520 (859)
T KOG1241|consen  450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADG--------NQSNLRSA  520 (859)
T ss_pred             HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccccc--------chhhHHHH
Confidence            45555554433 47888999999999983  1111111    212   1234444444333110        34568899


Q ss_pred             HHHHHHhhcC-CCCChHHHHhcCcHHH----HHHHhhc----cc---cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCc
Q 048113          153 AIATLHNLST-CHQLISPIVSSGVTYC----LLQLIHS----SE---KSSGLTEKAIALLENIVSSSEDALQEIAATCGA  220 (339)
Q Consensus       153 a~~~L~nLs~-~~~~~~~i~~~g~i~~----Lv~ll~~----~~---~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~  220 (339)
                      |..+|..+.. .++....++.. ....    |-+.+++    ..   +..+++..-+.+|...+...+..+..+.+  ..
T Consensus       521 AYeALmElIk~st~~vy~~v~~-~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d--~i  597 (859)
T KOG1241|consen  521 AYEALMELIKNSTDDVYPMVQK-LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD--QI  597 (859)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH--HH
Confidence            9999999987 45555444322 2222    2222321    00   01233444455555333444444445543  46


Q ss_pred             HHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh-hcCCHHHHHHHHHHHHHHhccCCCcch
Q 048113          221 IRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS-VDGTWRAKNMARDLLLLLRDCSSFGSR  298 (339)
Q Consensus       221 i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~A~~~L~~l~~~~~~~~~  298 (339)
                      ...+++++++ ++.-+.+.|..++..++..-+..+-+.+  ....|.|..=+ +..+..+-..|+++..-|++.=+.  .
T Consensus       598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~--~  673 (859)
T KOG1241|consen  598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED--D  673 (859)
T ss_pred             HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--h
Confidence            6777888887 5566778787777777654322222222  23566666555 344566667778887777653211  2


Q ss_pred             hhhhhhHHHHHHHHHHHh
Q 048113          299 SKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       299 ~~~~~~~~~~~i~~~~~~  316 (339)
                      ..-..++.+..+++.+..
T Consensus       674 i~py~d~~mt~Lvq~Lss  691 (859)
T KOG1241|consen  674 ILPYCDELMTVLVQCLSS  691 (859)
T ss_pred             hhhHHHHHHHHHHHHccC
Confidence            223457777777777753

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.79  E-value=0.0046  Score=58.95  Aligned_cols=254  Identities=17%  Similarity=0.193  Sum_probs=162.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-hHHh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-IRIV   78 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~~i~   78 (339)
                      ...+|++..+.+|..|+.....++.-     --+.+...|.|  |.+-|..+.+++.-.-+.+++.+..- ...+ ..=-
T Consensus       609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv-~~~~~mqpP  685 (975)
T COG5181         609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSV-HRFRSMQPP  685 (975)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhh-hcccccCCc
Confidence            45678899999999999999998875     23455567776  77888888999888777777776652 2222 1112


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      -.|.+|.|..+|.+....++.+....+..++...+...-..+ ...-=.|+++|++           .+.+++.+|..++
T Consensus       686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks-----------~nKeiRR~A~~tf  754 (975)
T COG5181         686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS-----------WNKEIRRNATETF  754 (975)
T ss_pred             hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH-----------hhHHHHHhhhhhh
Confidence            358999999999999989999998888888864443211111 1122357788888           7889999999999


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh---cCChH
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE---EGSPQ  234 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~  234 (339)
                      ..++..-.      -.+++..|++-|+.    .+-+...+.+++ .        ..+.+..|-+..|-.++.   .++..
T Consensus       755 G~Is~aiG------PqdvL~~LlnnLkv----qeRq~Rvctsva-I--------~iVae~cgpfsVlP~lm~dY~TPe~n  815 (975)
T COG5181         755 GCISRAIG------PQDVLDILLNNLKV----QERQQRVCTSVA-I--------SIVAEYCGPFSVLPTLMSDYETPEAN  815 (975)
T ss_pred             hhHHhhcC------HHHHHHHHHhcchH----HHHHhhhhhhhh-h--------hhhHhhcCchhhHHHHHhcccCchhH
Confidence            88765211      11223333333332    333444444443 1        122233454444444554   35566


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      +|.-.+.+++.+...-+...+..+  .-..|.|-.-+.+.++.-+..|...+++|+-++
T Consensus       816 VQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         816 VQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            777667776666544222122222  235666667788889999999999999998764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.78  E-value=5.5e-05  Score=45.98  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=36.8

Q ss_pred             cchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113           71 ERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS  110 (339)
Q Consensus        71 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~  110 (339)
                      ++++..+.+.|+++.|++++.+++++++..++++|.|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4588899999999999999999899999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.0034  Score=61.50  Aligned_cols=222  Identities=15%  Similarity=0.160  Sum_probs=126.5

Q ss_pred             hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHH
Q 048113           48 LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRL  127 (339)
Q Consensus        48 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L  127 (339)
                      |++++.-++-.|+.+|++++. .+-.|      +..|-+.+++++.++-++..|+-+...+-.-.+....+    +++..
T Consensus       116 L~s~nq~vVglAL~alg~i~s-~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----f~~~~  184 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNICS-PEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----FVIAF  184 (866)
T ss_pred             ccCCCeeehHHHHHHhhccCC-HHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----hhHHH
Confidence            445577788889999999998 23323      34577888999999999999999998887655554433    46666


Q ss_pred             HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhc----c---------ccCchHH
Q 048113          128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHS----S---------EKSSGLT  193 (339)
Q Consensus       128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~----~---------~~~~~~~  193 (339)
                      .++|.+           .+..+...++..+..+|. +++....+.+  .++.||..|++    +         -.++=++
T Consensus       185 ~~lL~e-----------k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ  251 (866)
T KOG1062|consen  185 RKLLCE-----------KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ  251 (866)
T ss_pred             HHHHhh-----------cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence            677766           566677777777777766 4555444444  45555555543    0         0123345


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhh--------------CC--cHHHHHH-Hhh-cCChHHHHHHHHHHHHhhccCchhHH
Q 048113          194 EKAIALLENIVSSSEDALQEIAAT--------------CG--AIRALVE-TIE-EGSPQCKEHAVAILLLICKSCRDKYR  255 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~--------------~g--~i~~Lv~-lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~  255 (339)
                      ...+..|. .+-.++........+              .|  .+-..|. ++. .+++..+..|+.+|..+-.+.....|
T Consensus       252 i~iLrlLr-iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir  330 (866)
T KOG1062|consen  252 IRILRLLR-ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR  330 (866)
T ss_pred             HHHHHHHH-HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee
Confidence            55555555 443332222111110              00  0111111 111 13455666677777666543322111


Q ss_pred             HHHHh---------c----CChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          256 SSILK---------E----GVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       256 ~~~~~---------~----g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      ..-++         .    .-=..+++-+++.++.+|++|..++..|.+.++
T Consensus       331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N  382 (866)
T KOG1062|consen  331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN  382 (866)
T ss_pred             eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc
Confidence            11000         0    012345566777888888888888888877664

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.77  E-value=0.0013  Score=63.72  Aligned_cols=251  Identities=16%  Similarity=0.187  Sum_probs=161.9

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            6 MDNLLNGERETQIQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         6 v~~L~s~~~~~~~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      ..+|++.++.+|..|+..++.++.-     --+.+...|+|  |.+.|....+++.-.-+.+++.+..--.-.+..=--.
T Consensus       805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~  882 (1172)
T KOG0213|consen  805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK  882 (1172)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence            4577899999999999999999875     22355567877  7789999999988777777666655211112111235


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc----hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN----KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      |.+|.|..+|.+....+++++...+..++...+.    |+-+   ..-=.|+.+|+.           .+..++.+|..+
T Consensus       883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLka-----------hkK~iRRaa~nT  948 (1172)
T KOG0213|consen  883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKA-----------HKKEIRRAAVNT  948 (1172)
T ss_pred             hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHhh
Confidence            8899999999999999999999999999864432    2211   122357778877           688899999999


Q ss_pred             HHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCc---HHHHHHHhhcCCh
Q 048113          157 LHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGA---IRALVETIEEGSP  233 (339)
Q Consensus       157 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~---i~~Lv~lL~~~~~  233 (339)
                      +..++..-         |=-+.|..+|.+- +..+-+...+.+++ . +       .+.++.|-   +|.|..--..++-
T Consensus       949 fG~IakaI---------GPqdVLatLlnnL-kvqeRq~RvcTtva-I-a-------IVaE~c~pFtVLPalmneYrtPe~ 1009 (1172)
T KOG0213|consen  949 FGYIAKAI---------GPQDVLATLLNNL-KVQERQNRVCTTVA-I-A-------IVAETCGPFTVLPALMNEYRTPEA 1009 (1172)
T ss_pred             hhHHHHhc---------CHHHHHHHHHhcc-hHHHHHhchhhhhh-h-h-------hhhhhcCchhhhHHHHhhccCchh
Confidence            98876521         2223344444331 12333444444444 1 1       22233444   4444443344666


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      .+|.-.+.+|+.+...-++-.+..+.  -+.|.|-.-+.+.++.-+..|+.++++++-+.
T Consensus      1010 nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1010 NVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            77887777776665442222222222  36677777788888888999999999998763

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.76  E-value=0.0004  Score=59.89  Aligned_cols=187  Identities=18%  Similarity=0.172  Sum_probs=113.4

Q ss_pred             ccCCHHHHHHHHHHHHHhccCC--cchhhHHhhc--CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchH
Q 048113           49 CSQDYEAIEAALLSLLSLACGS--ERNKIRIVKS--GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAI  124 (339)
Q Consensus        49 ~~~~~~~~~~A~~~L~~Ls~~~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i  124 (339)
                      .+.+.+.+..|+..|..+..++  ......+.+.  ..++.+...+.+....+...|+.++..++..-.....-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5568899999999999999865  2333444332  56677777777766778899999999988644332222234578


Q ss_pred             HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113          125 QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV  204 (339)
Q Consensus       125 ~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l  204 (339)
                      |.|++.+.+           .+..++..|..+|..++..-.....+    .++.+...+.+  +++.++..++..+...+
T Consensus        97 ~~Ll~~~~~-----------~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~--Kn~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen   97 PPLLKKLGD-----------SKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS--KNPQVREECAEWLAIIL  159 (228)
T ss_dssp             HHHHHGGG--------------HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT---S-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcc-----------ccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC--CCHHHHHHHHHHHHHHH
Confidence            999999988           68889999999999997754311111    13444555555  36888999998888555


Q ss_pred             cCCHhhhHHHHh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCch
Q 048113          205 SSSEDALQEIAA---TCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRD  252 (339)
Q Consensus       205 ~~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~  252 (339)
                      ...+.....+..   -...++.+...+.++++.+++.|-.+++.+....+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  160 EKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             TT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            555511111111   024678888899999999999999999998765444

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.016  Score=53.31  Aligned_cols=226  Identities=15%  Similarity=0.109  Sum_probs=160.7

Q ss_pred             HHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc------cch----HHHHhcchHHH
Q 048113           57 EAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL------ENK----LEIASSGAIQR  126 (339)
Q Consensus        57 ~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------~~~----~~i~~~g~i~~  126 (339)
                      ...++-+..+|. -|+-...+++.++++.|+.+|.+.+.++....+..|-.|...+      +..    ..+++.+.++.
T Consensus       102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            346777888999 6888889999999999999999999999999999999887522      111    23457888999


Q ss_pred             HHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc
Q 048113          127 LVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS  205 (339)
Q Consensus       127 Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~  205 (339)
                      |++-+..-+.     ...+..+...+++..+-|+.. .+..+..+++.|.+.-|+.-+.....-+.-...|..+|+ .+-
T Consensus       181 LvqnveRLdE-----svkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLa-ill  254 (536)
T KOG2734|consen  181 LVQNVERLDE-----SVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILA-ILL  254 (536)
T ss_pred             HHHHHHHhhh-----cchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHH-HHh
Confidence            9887754100     000223455678888889876 678888999999888888766543334566788888888 554


Q ss_pred             C-CHhhhHHHHhhCCcHHHHHHHhhc----C-----ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113          206 S-SEDALQEIAATCGAIRALVETIEE----G-----SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT  275 (339)
Q Consensus       206 ~-~~~~~~~i~~~~g~i~~Lv~lL~~----~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~  275 (339)
                      . ..+++..... -+++..+++-+.-    +     ..+..++-..+|+.+-..  +++|+.+..+.+++...=+++. .
T Consensus       255 q~s~e~~~~~~~-l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~--~~nr~~Fl~~EGlqLm~Lmlr~-K  330 (536)
T KOG2734|consen  255 QNSDENRKLLGP-LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA--PANRERFLKGEGLQLMNLMLRE-K  330 (536)
T ss_pred             ccCchhhhhhcC-cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC--hhhhhhhhccccHHHHHHHHHH-H
Confidence            4 4557777765 7889998887631    1     245667777788777665  3578999987777765544554 5


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 048113          276 WRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       276 ~~~~~~A~~~L~~l~~~~  293 (339)
                      ...+..|...|.....+.
T Consensus       331 k~sr~SalkvLd~am~g~  348 (536)
T KOG2734|consen  331 KVSRGSALKVLDHAMFGP  348 (536)
T ss_pred             HHhhhhHHHHHHHHHhCC
Confidence            556677788887765543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.70  E-value=0.0032  Score=57.65  Aligned_cols=188  Identities=20%  Similarity=0.197  Sum_probs=133.7

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHH
Q 048113           39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI  118 (339)
Q Consensus        39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i  118 (339)
                      ..++.+..++.+.+..++..|+..++.+..           .-++|.+..++.+.++.++..|+.+|..+          
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------  101 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL----------  101 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence            578888999999999999999888655544           23689999999999999999998866443          


Q ss_pred             HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc----------
Q 048113          119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK----------  188 (339)
Q Consensus       119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~----------  188 (339)
                      .....++.|+.++.++          .+..++..+..+|..+-...          .+..++..+++...          
T Consensus       102 ~~~~a~~~li~~l~~d----------~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~  161 (335)
T COG1413         102 GDPEAVPPLVELLEND----------ENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAA  161 (335)
T ss_pred             CChhHHHHHHHHHHcC----------CcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccch
Confidence            2344789999999853          78999999999999873322          27777777776420          


Q ss_pred             CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHH
Q 048113          189 SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLL  268 (339)
Q Consensus       189 ~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~  268 (339)
                      ....+..+...|.           .+. +...++.+..++.+.+..++..|+.+|..+....          ..+.+.+.
T Consensus       162 ~~~~r~~a~~~l~-----------~~~-~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~  219 (335)
T COG1413         162 LLDVRAAAAEALG-----------ELG-DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLV  219 (335)
T ss_pred             HHHHHHHHHHHHH-----------HcC-ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHH
Confidence            0123334444444           122 2567899999999988899999999998887552          12445566


Q ss_pred             HhhhcCCHHHHHHHHHHHHHH
Q 048113          269 QLSVDGTWRAKNMARDLLLLL  289 (339)
Q Consensus       269 ~ll~~~~~~~~~~A~~~L~~l  289 (339)
                      +.+.+.+..++..++..|..+
T Consensus       220 ~~~~~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         220 KALSDESLEVRKAALLALGEI  240 (335)
T ss_pred             HHhcCCCHHHHHHHHHHhccc
Confidence            666666666666666655444

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.024  Score=55.75  Aligned_cols=304  Identities=14%  Similarity=0.131  Sum_probs=165.4

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      |..=|++++..+..-|+.+|++++..  .|      +..|.+-+++++.++.+|..|+.+...+-...|+.-+.+     
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----  180 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----  180 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----
Confidence            34456788888889999999988764  33      345667788899999999999999888877555443333     


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCC-----CCCCCCc---------------
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGD-----LADDDNS---------------  141 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~---------------  141 (339)
                      ++....+|.+.+..+...++..+..++.. ++.-..+.+  .++.|+..|++-     +.+.+..               
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL  258 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL  258 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence            33445555555555555555555555532 222222222  444444444431     1111100               


Q ss_pred             --cCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc---CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          142 --YGRISVQAKIDAIATLHNLSTCHQLISPIVSS---GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       142 --~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                        +++++.+....-...|..++.+.+.-+-+..+   .+|..+..+-    +...+++.|+.+|+..+...+.|.+.+.-
T Consensus       259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~----~~~~LrvlainiLgkFL~n~d~NirYvaL  334 (866)
T KOG1062|consen  259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR----SNSGLRVLAINILGKFLLNRDNNIRYVAL  334 (866)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence              12244444444444555554422111111111   1122222221    24577777777777544444433322210


Q ss_pred             ---------hCCcH----HHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHH
Q 048113          217 ---------TCGAI----RALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMAR  283 (339)
Q Consensus       217 ---------~~g~i----~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~  283 (339)
                               +..++    ..+++-|++++..++..|...+..|...+ + .+.      .+..|+..+...++..+..-+
T Consensus       335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~-N-v~~------mv~eLl~fL~~~d~~~k~~~a  406 (866)
T KOG1062|consen  335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES-N-VRV------MVKELLEFLESSDEDFKADIA  406 (866)
T ss_pred             hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-c-HHH------HHHHHHHHHHhccHHHHHHHH
Confidence                     01111    45677888889999999999988887553 2 343      356688888887888775544


Q ss_pred             HHHHHHhc-cCCCcc------------hhhhhhhHHHHHHHHHHHhc-CcccchHHHHHHHHHH
Q 048113          284 DLLLLLRD-CSSFGS------------RSKQLKNELVEQIMQEIDAE-GDTVAGTTLRLVEEMI  333 (339)
Q Consensus       284 ~~L~~l~~-~~~~~~------------~~~~~~~~~~~~i~~~~~~~-~~~~~~~a~~~l~~~v  333 (339)
                      .-+..++. +++..+            -++.+..+++..+++.+... ++.-.+.-+|+...+.
T Consensus       407 s~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~  470 (866)
T KOG1062|consen  407 SKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALS  470 (866)
T ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence            44433332 222100            12335578888888888533 3333445555555544

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.014  Score=56.68  Aligned_cols=265  Identities=15%  Similarity=0.099  Sum_probs=151.9

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113            9 LLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV   85 (339)
Q Consensus         9 L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~   85 (339)
                      |.|.|+.-.+-|+.+++|+-.- .+..+..  -|+   ++|-++  .+-++..|+-+|..|-+.+|+   .+-..+-...
T Consensus       120 L~srn~~fv~LAL~~I~niG~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~r  191 (938)
T KOG1077|consen  120 LSSRNPTFVCLALHCIANIGSREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQR  191 (938)
T ss_pred             hhcCCcHHHHHHHHHHHhhccHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHH
Confidence            4567777788888888877653 4443322  122   555444  445777787777777774443   2223355788


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCC-CCCc-cCCCCHHHHHHHHHHHHhhc
Q 048113           86 LLEVLQCQSTTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLAD-DDNS-YGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~-~~~~~~~~~~~a~~~L~nLs  161 (339)
                      ++.+|+..+..+...+...+--|+...+  .+..+  .-++..|..+......+ .|-. +.-..|=.....+++|.+.-
T Consensus       192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p  269 (938)
T KOG1077|consen  192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP  269 (938)
T ss_pred             HHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence            9999998887777777777777775332  23322  22333443333331110 0111 12245567777888888773


Q ss_pred             C--CCCChHHHHhcCcHHHHHHHhhccccCchHHH----HH-H-HHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113          162 T--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTE----KA-I-ALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP  233 (339)
Q Consensus       162 ~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~----~a-~-~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  233 (339)
                      .  ++..+..+.+  +.+.++...+.+++..+++.    +| + .++. +....+.....+.   .++..|-++|.+.+.
T Consensus       270 ~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e~~ll~---~~~~~Lg~fls~rE~  343 (938)
T KOG1077|consen  270 TPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSEPELLS---RAVNQLGQFLSHRET  343 (938)
T ss_pred             CCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCcHHHHH---HHHHHHHHHhhcccc
Confidence            3  2333444433  45555555554332222221    12 1 2333 2222333333333   367888888888888


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccC
Q 048113          234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      .++..|+..++.|+.....  ...+.. . ...++..++ ..+..++++|+.+|..+++-+
T Consensus       344 NiRYLaLEsm~~L~ss~~s--~davK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  344 NIRYLALESMCKLASSEFS--IDAVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             cchhhhHHHHHHHHhccch--HHHHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence            8888898888888876322  232222 2 556666666 667888899999998887755

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.0051  Score=58.67  Aligned_cols=226  Identities=18%  Similarity=0.154  Sum_probs=141.3

Q ss_pred             HHHhcCChHHHHHHhc---cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh----HHHHHhhcCCChhHHHHHHHHHH
Q 048113           34 KLVERGIIAPLISMLC---SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV----PVLLEVLQCQSTTLIELTVAAML  106 (339)
Q Consensus        34 ~i~~~g~i~~Lv~lL~---~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i----~~Lv~lL~~~~~~~~~~a~~~L~  106 (339)
                      ...+...++.+...+.   +..+.+|+.|..+...+-...        ...++    |.++.-+....-..+..++..+.
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--------~~~aVK~llpsll~~l~~~kWrtK~aslellg  279 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--------SAYAVKLLLPSLLGSLLEAKWRTKMASLELLG  279 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc--------CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH
Confidence            3345666666666554   346677777666655444321        12233    33333333334456778888899


Q ss_pred             HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113          107 ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       107 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~  186 (339)
                      .++...+..-...-...+|.+.+.|-+           .+++++..+..+|..++..-+|....   -.+|.|++.+.++
T Consensus       280 ~m~~~ap~qLs~~lp~iiP~lsevl~D-----------T~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp  345 (569)
T KOG1242|consen  280 AMADCAPKQLSLCLPDLIPVLSEVLWD-----------TKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADP  345 (569)
T ss_pred             HHHHhchHHHHHHHhHhhHHHHHHHcc-----------CCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCc
Confidence            888777766667778899999999988           79999999999999998765555411   2467777777764


Q ss_pred             ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh--cCCh
Q 048113          187 EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVM  264 (339)
Q Consensus       187 ~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i  264 (339)
                      .   .-...|+..|. -..--...-..-.  +=.+|.|.+-+...+..++..++.+..|+|.--++  .+.+..  -..+
T Consensus       346 ~---~~~~e~~~~L~-~ttFV~~V~~psL--almvpiL~R~l~eRst~~kr~t~~IidNm~~LveD--p~~lapfl~~Ll  417 (569)
T KOG1242|consen  346 S---CYTPECLDSLG-ATTFVAEVDAPSL--ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED--PKDLAPFLPSLL  417 (569)
T ss_pred             c---cchHHHHHhhc-ceeeeeeecchhH--HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC--HHHHhhhHHHHh
Confidence            2   23445665555 2211110000000  11244555555666788889999999999975321  122222  2356


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHH
Q 048113          265 PGLLQLSVDGTWRAKNMARDLLLLL  289 (339)
Q Consensus       265 ~~L~~ll~~~~~~~~~~A~~~L~~l  289 (339)
                      |.|-..+.+..|.+|.-|..+|.-+
T Consensus       418 p~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  418 PGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             hHHHHHhcCCChhHHHHHHHHHHHH
Confidence            6666677777899999999999444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.59  E-value=0.0029  Score=50.51  Aligned_cols=137  Identities=13%  Similarity=0.194  Sum_probs=97.5

Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEK  195 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  195 (339)
                      ..+.+.+|+..|++++.+++.     ..+........++.++..|-.....-=...+..+|.+++..+.....+..+...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~-----~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~   79 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTE-----IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQR   79 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCc-----cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHH
Confidence            456678899999999988420     000024677788888888866544333456667888999999876546889999


Q ss_pred             HHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHH
Q 048113          196 AIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSI  258 (339)
Q Consensus       196 a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  258 (339)
                      |+.+|- .+..+.......+.+.=-++.|+.+|+.+++.++.++...+-.|....++.-|+.+
T Consensus        80 sLaILE-s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   80 SLAILE-SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHH-HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            999999 45555555444444355689999999999999999999888777665555334433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=0.0068  Score=61.08  Aligned_cols=221  Identities=15%  Similarity=0.118  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHH-HHhccCCcchhhHHhhcCChHHHHHhhcC
Q 048113           17 QIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSL-LSLACGSERNKIRIVKSGIVPVLLEVLQC   92 (339)
Q Consensus        17 ~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L-~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~   92 (339)
                      |..|+..|..+..-   .-..-..-|+.|.++++|++.-.+++..-..+= ..|+. ++..+..+++.++-..+++.|..
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEecC
Confidence            34455555544432   334445789999999999999888876544433 45666 67778889988888888888876


Q ss_pred             -C--ChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCCh
Q 048113           93 -Q--STTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLI  167 (339)
Q Consensus        93 -~--~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~  167 (339)
                       +  +++-+..|+.+|..+..+- ..+....+.+.+...+..+..+          ..+-.+...+-+|..|=. .++.+
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~----------~~pLLrQW~~icLG~LW~d~~~Ar  635 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD----------PEPLLRQWLCICLGRLWEDYDEAR  635 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC----------ccHHHHHHHHHHHHHHhhhcchhh
Confidence             3  4678888999999988654 4566666788888888888772          368889999999999855 45555


Q ss_pred             HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC----CHhhhHHH---Hh-------hCCcH----HHHHHHhh
Q 048113          168 SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS----SEDALQEI---AA-------TCGAI----RALVETIE  229 (339)
Q Consensus       168 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~----~~~~~~~i---~~-------~~g~i----~~Lv~lL~  229 (339)
                      -.=.+.++.+.|..+|.+.  .++++.+|+.+|+-.+..    .++....+   ..       -+..+    ..++.+++
T Consensus       636 w~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs  713 (1387)
T KOG1517|consen  636 WSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS  713 (1387)
T ss_pred             hccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh
Confidence            5556779999999999985  579999999999955543    22222222   00       01223    47788888


Q ss_pred             cCChHHHHHHHHHHHHhhccC
Q 048113          230 EGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       230 ~~~~~~~~~a~~~L~~l~~~~  250 (339)
                      ++++-++...+.+|..+....
T Consensus       714 dgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  714 DGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             ccchHHHHHHHHHHHHHHHhh
Confidence            899999888888888877653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.53  E-value=0.005  Score=62.01  Aligned_cols=205  Identities=15%  Similarity=0.112  Sum_probs=148.2

Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHH-hcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLIL-SSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      ...|+.|..+++|+++..+++..-+.+=..+ +-++.|+..+++.++-...+++|.....        -+++-+.-|+-+
T Consensus       509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~--------~~~EqrtmaAFV  580 (1387)
T KOG1517|consen  509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA--------IPPEQRTMAAFV  580 (1387)
T ss_pred             hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC--------CCHHHHHHHHHH
Confidence            3559999999999999988887665555554 5677778888888888888888866210        356788889989


Q ss_pred             HHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113          157 LHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC  235 (339)
Q Consensus       157 L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  235 (339)
                      |.-++. .+.+.+...+.+.+..-+..|.++. .+-++.=++-+|+.+-...++.|-.-.+ .++.+.|..+|.++.+++
T Consensus       581 LAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEV  658 (1387)
T KOG1517|consen  581 LAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEV  658 (1387)
T ss_pred             HHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHH
Confidence            999887 4566777788888988888888752 3445555666777333556666666565 789999999999999999


Q ss_pred             HHHHHHHHHHhhccC----chh--HHH--------HHHhcCChH----HHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          236 KEHAVAILLLICKSC----RDK--YRS--------SILKEGVMP----GLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       236 ~~~a~~~L~~l~~~~----~~~--~~~--------~~~~~g~i~----~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      +-.|+.+|..+-...    ++.  .++        .+.-+..++    .++.+++++++-++...+..|..+.-.
T Consensus       659 RaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  659 RAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG  733 (1387)
T ss_pred             HHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence            999999998886531    111  111        111223333    677788899999988888888777553

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.52  E-value=0.00028  Score=42.77  Aligned_cols=38  Identities=32%  Similarity=0.477  Sum_probs=35.0

Q ss_pred             HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113           31 QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC   68 (339)
Q Consensus        31 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~   68 (339)
                      ++..+.+.|+++.|+.++++++++++..|+++|+|++.
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            56778899999999999999999999999999999974

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=0.0046  Score=60.61  Aligned_cols=246  Identities=13%  Similarity=0.044  Sum_probs=161.7

Q ss_pred             CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHH-HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113           70 SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQ  148 (339)
Q Consensus        70 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~  148 (339)
                      ...-+...++.|+...|+++.....++.+..+..+|. .++. +..+    ....++++.+.+++.          ....
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~----~~~v~~~~~s~~~~d----------~~~~  557 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGER----SYEVVKPLDSALHND----------EKGL  557 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCc----hhhhhhhhcchhhhh----------HHHH
Confidence            5667888899999999999999988888888888877 2211 1111    134577777777662          2233


Q ss_pred             HHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHH-HhhCCcHHHHHH
Q 048113          149 AKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEI-AATCGAIRALVE  226 (339)
Q Consensus       149 ~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i-~~~~g~i~~Lv~  226 (339)
                      -...++.++.||+. ++..+..+++.-+++.+-.++...  ++.++..++..+. |+..++....+. ++.....+-...
T Consensus       558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~-NLl~~~~~~e~si~e~~~~l~~w~~  634 (748)
T KOG4151|consen  558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE--NPALQRAALESII-NLLWSPLLYERSIVEYKDRLKLWNL  634 (748)
T ss_pred             HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHH-HHHhhHHHHHHHhhccccCchHHHH
Confidence            34469999999987 567777888776666666665543  5788889999999 677777665444 443455666666


Q ss_pred             HhhcCChHHHHHHHHHHHHhhccCchhHHHHHH-hcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhH
Q 048113          227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSIL-KEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNE  305 (339)
Q Consensus       227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~  305 (339)
                      .+..........+++++..++..... .+..+. .......++.++.+.++.+|.....+..++...... --.+.+..+
T Consensus       635 ~~e~~~E~~~lA~a~a~a~I~sv~~n-~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~e-i~~~~~~~~  712 (748)
T KOG4151|consen  635 NLEVADEKFELAGAGALAAITSVVEN-HCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFE-IAEKIFETE  712 (748)
T ss_pred             HHHhhhhHHhhhccccccchhhcchh-hhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHH-HHHHhccch
Confidence            66665666777777777766655433 444333 356888899999999999997777766665543321 012233444


Q ss_pred             HHHHHHHHHHhcCcccchHHHHHHHHHHHH
Q 048113          306 LVEQIMQEIDAEGDTVAGTTLRLVEEMIAK  335 (339)
Q Consensus       306 ~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~  335 (339)
                      .+..+...-..+-.+.++.|...|..++..
T Consensus       713 ~~~~l~~~~~~~~a~~~~~~~~~l~~a~~~  742 (748)
T KOG4151|consen  713 VMELLSGLQKLNRAPKREDAAPCLSAAEEY  742 (748)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhHHHHHHHh
Confidence            444443333355577777788877776654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.06  Score=52.44  Aligned_cols=297  Identities=14%  Similarity=0.149  Sum_probs=174.2

Q ss_pred             HHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh-HHhhcCC
Q 048113            6 MDNLLNGE--RETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI-RIVKSGI   82 (339)
Q Consensus         6 v~~L~s~~--~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~-~i~~~g~   82 (339)
                      -++|.|++  .-++.+|+-+|-.+-+.+.+.+...+...+++.+|++.+..+...+...+-.|++.+|+... .+-.  +
T Consensus       152 ~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--a  229 (938)
T KOG1077|consen  152 PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--A  229 (938)
T ss_pred             HHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--H
Confidence            35666553  35678888888777777777777788999999999998888888888889889886665432 2211  1


Q ss_pred             hHHHHHhhcC-------------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113           83 VPVLLEVLQC-------------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA  149 (339)
Q Consensus        83 i~~Lv~lL~~-------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~  149 (339)
                      +..|.+....             +.|=++-..+++|.++-..++.-....-....+.++...+.+.         .+.++
T Consensus       230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~---------~~k~v  300 (938)
T KOG1077|consen  230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP---------KSKKV  300 (938)
T ss_pred             HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc---------cccch
Confidence            2222222111             2244677777777777543332222222334555555554321         11111


Q ss_pred             HH-----HHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113          150 KI-----DAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA  223 (339)
Q Consensus       150 ~~-----~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~  223 (339)
                      +.     ..+--.-+|+. .+.....+..  ++..|-+++.+.  ...++--|+..++ .++........+-.+   ...
T Consensus       301 q~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r--E~NiRYLaLEsm~-~L~ss~~s~davK~h---~d~  372 (938)
T KOG1077|consen  301 QHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR--ETNIRYLALESMC-KLASSEFSIDAVKKH---QDT  372 (938)
T ss_pred             HhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc--cccchhhhHHHHH-HHHhccchHHHHHHH---HHH
Confidence            11     11111223333 3444444444  466788888875  4788889999999 677776666665542   677


Q ss_pred             HHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc-----cCCCcc
Q 048113          224 LVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD-----CSSFGS  297 (339)
Q Consensus       224 Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~-----~~~~~~  297 (339)
                      ++..|+ ..+..++..|+..|..+|..+..   +.+     +.-|++.+.+-+..+|+.-+.=...|+.     ..+|.-
T Consensus       373 Ii~sLkterDvSirrravDLLY~mcD~~Na---k~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd  444 (938)
T KOG1077|consen  373 IINSLKTERDVSIRRRAVDLLYAMCDVSNA---KQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD  444 (938)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHhchhhH---HHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence            888888 57889999999999999976433   333     5556666666776666443322222221     122100


Q ss_pred             --------hhhhhhhHHHHHHHHHHHhcCcccch-HHHHHHH
Q 048113          298 --------RSKQLKNELVEQIMQEIDAEGDTVAG-TTLRLVE  330 (339)
Q Consensus       298 --------~~~~~~~~~~~~i~~~~~~~~~~~~~-~a~~~l~  330 (339)
                              -++..++++--++++.+ ++.+++.+ .|.++..
T Consensus       445 viLqLiriagd~vsdeVW~RvvQiV-vNnedlq~yaak~~fe  485 (938)
T KOG1077|consen  445 VILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYAAKRLFE  485 (938)
T ss_pred             HHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHHHHHHHH
Confidence                    01234566667766666 56666644 5655543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.39  E-value=0.0043  Score=59.18  Aligned_cols=248  Identities=15%  Similarity=0.177  Sum_probs=142.2

Q ss_pred             ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh---hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--
Q 048113           40 IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK---IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--  114 (339)
Q Consensus        40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--  114 (339)
                      ++...+.+|++..+.++..|+...+.|+. --.++   ..+.+.|.|  |..-|....+++.-..+.+++.+.+...-  
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            34556678889999999999999988886 22222   233344443  55667777888877666676666543222  


Q ss_pred             -hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCC---hHHHHhcCcHHHHHHHhhccccC
Q 048113          115 -KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQL---ISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       115 -~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~---~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                       ++-  -.|.+|.|..+|++           .+.++..+.+..+..+|.. ++.   ++++.-   --.|+++|+++  .
T Consensus       682 mqpP--i~~ilP~ltPILrn-----------kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~--n  743 (975)
T COG5181         682 MQPP--ISGILPSLTPILRN-----------KHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSW--N  743 (975)
T ss_pred             cCCc--hhhccccccHhhhh-----------hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHh--h
Confidence             222  36789999999999           8999999999999999884 432   445533   23477888886  3


Q ss_pred             chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH--HHHHhhccCchhHHHHHHhcCChHHH
Q 048113          190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA--ILLLICKSCRDKYRSSILKEGVMPGL  267 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~--~L~~l~~~~~~~~~~~~~~~g~i~~L  267 (339)
                      .+++++|..+++ .++.      .+.- .+++..|++-|+.  .+.+...+.  ++.-.+..+++        ..++|.|
T Consensus       744 KeiRR~A~~tfG-~Is~------aiGP-qdvL~~LlnnLkv--qeRq~RvctsvaI~iVae~cgp--------fsVlP~l  805 (975)
T COG5181         744 KEIRRNATETFG-CISR------AIGP-QDVLDILLNNLKV--QERQQRVCTSVAISIVAEYCGP--------FSVLPTL  805 (975)
T ss_pred             HHHHHhhhhhhh-hHHh------hcCH-HHHHHHHHhcchH--HHHHhhhhhhhhhhhhHhhcCc--------hhhHHHH
Confidence            688999988888 3321      1111 1233333333332  222222221  11222211111        2357777


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH---hcCccc-chHHHHHHHHH
Q 048113          268 LQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID---AEGDTV-AGTTLRLVEEM  332 (339)
Q Consensus       268 ~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~-~~~a~~~l~~~  332 (339)
                      +.=-..++..+|.-.+.++..+-..      .-+++.+-+-.|...+.   -|-|++ +++|..+..-+
T Consensus       806 m~dY~TPe~nVQnGvLkam~fmFey------ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl  868 (975)
T COG5181         806 MSDYETPEANVQNGVLKAMCFMFEY------IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL  868 (975)
T ss_pred             HhcccCchhHHHHhHHHHHHHHHHH------HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence            6555666666776655555544331      11233333333333332   344555 55666655544

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.32  E-value=0.0011  Score=48.86  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113           17 QIQAANELGKLSRR---QKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus        17 ~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +..-++.|++++..   +++.+.+.|+++.++...  +..+|-+++.|+.++++|+.++++|+..+.+..
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            45667889999986   999999999999999865  445899999999999999999999999887653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.0081  Score=58.75  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=60.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE   71 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~   71 (339)
                      +++...++++++.+|..|+-...++-....+...+.|.+..|-.++.++++.+..+|+.+|..+...++
T Consensus       124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  124 DPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            577888899999999999988877766688888899999999999999999999999999999988544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.27  E-value=0.00048  Score=44.94  Aligned_cols=55  Identities=22%  Similarity=0.177  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHH
Q 048113           53 YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLIL  108 (339)
Q Consensus        53 ~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL  108 (339)
                      +.+|..|+++|++++...+. ...-....++|.|+.+|.++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~-~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPE-LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHH-HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999884333 33335668999999999999999999999999875

...

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.27  E-value=0.015  Score=46.56  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=93.4

Q ss_pred             hHHHHhcCcHHHHHHHhhcccc----CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHH
Q 048113          167 ISPIVSSGVTYCLLQLIHSSEK----SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG--SPQCKEHAV  240 (339)
Q Consensus       167 ~~~i~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~  240 (339)
                      ...+...||+..|++++.++..    ..++...++.++.+++-..-.+. ..+. ..+|..++..+...  ++.+.+.|+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~-~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLS-DSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhcc-HHHHHHHHHHHccccccchHHHHHH
Confidence            3567788999999999988642    24677888888885444333344 4444 57899999988764  478899999


Q ss_pred             HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .+|-++...++. .-..+.++=-++.|+..++.+++.++.+|..++-.|-.
T Consensus        82 aILEs~Vl~S~~-ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   82 AILESIVLNSPK-LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHHHhCCHH-HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999987644 45566667789999999999999999999998855543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.031  Score=54.92  Aligned_cols=290  Identities=14%  Similarity=0.117  Sum_probs=154.5

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC---Ccch-----
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG---SERN-----   73 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~-----   73 (339)
                      ||.+-.+|.+.++-+.-.|+.+...++-+.-+.+  ++--+.++++|.+-+..-|...+..|..-|++   .|..     
T Consensus       182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~  259 (968)
T KOG1060|consen  182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSL  259 (968)
T ss_pred             HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccc
Confidence            4455555556666666666666655554311111  22334455555554444454454444433331   1100     


Q ss_pred             ----------------hhHHhhcCChHHHH----HhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113           74 ----------------KIRIVKSGIVPVLL----EVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG  133 (339)
Q Consensus        74 ----------------~~~i~~~g~i~~Lv----~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~  133 (339)
                                      +..++..-=+..|+    .+|.+.++.+...++.+.+.++-..+.      ...+++|+++|++
T Consensus       260 e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs  333 (968)
T KOG1060|consen  260 EDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRS  333 (968)
T ss_pred             ccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhc
Confidence                            00111111122333    345667788888888999888864432      2358889998877


Q ss_pred             CCCCCC------------------------CccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccC
Q 048113          134 DLADDD------------------------NSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       134 ~~~~~~------------------------~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                      +..-..                        +.++++...+...-+..|.+|+........      ++.+-..+.+.  +
T Consensus       334 ~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~I------LrE~q~YI~s~--d  405 (968)
T KOG1060|consen  334 NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEI------LRELQTYIKSS--D  405 (968)
T ss_pred             CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHH------HHHHHHHHhcC--c
Confidence            421110                        013344444555555555555443331111      12233333433  2


Q ss_pred             chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113          190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      ..+...++.+++ .|+....   .+.  .-++.-|+.++++.+..+...++.++..|-..++.+.-+      .+..|.+
T Consensus       406 ~~faa~aV~AiG-rCA~~~~---sv~--~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~------ii~~La~  473 (968)
T KOG1060|consen  406 RSFAAAAVKAIG-RCASRIG---SVT--DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE------ILFQLAR  473 (968)
T ss_pred             hhHHHHHHHHHH-HHHHhhC---chh--hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH------HHHHHHH
Confidence            346677778888 4543321   222  357888999999988888888999999988776543211      3455555


Q ss_pred             hhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchH
Q 048113          270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGT  324 (339)
Q Consensus       270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  324 (339)
                      ++.+  ..+-..=+.++|.+.....   .--.+..+++..+.+.+..+|+.++-.
T Consensus       474 lldt--i~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQ  523 (968)
T KOG1060|consen  474 LLDT--ILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQ  523 (968)
T ss_pred             Hhhh--hhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHH
Confidence            5532  2222222346677766544   334466777777777776677666654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.26  E-value=0.0011  Score=48.85  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc--CCChhHHHHHHHHHHHHhc-CccchHHHHh
Q 048113           56 IEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ--CQSTTLIELTVAAMLILSS-CLENKLEIAS  120 (339)
Q Consensus        56 ~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~  120 (339)
                      +..-.+.+++|+..++.++..+.+.|++|.++....  ..+|-+++.|.+++.||.. +++++..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            455678999999999999999999999999999754  4478999999999999996 5566776664

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.19  E-value=0.17  Score=51.32  Aligned_cols=246  Identities=16%  Similarity=0.143  Sum_probs=147.6

Q ss_pred             HHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc----CCC----hhHHHHH
Q 048113           35 LVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ----CQS----TTLIELT  101 (339)
Q Consensus        35 i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a  101 (339)
                      +.+.|++..++.++.+-     ..+.....++.|..+++ -+.||+.+.+.|+++.|+..+.    .+.    +++.+..
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            35799999999988762     44677778889999999 6999999999999999998774    323    4566655


Q ss_pred             HHHHHHHhcCcc---chHH---HH-------hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-
Q 048113          102 VAAMLILSSCLE---NKLE---IA-------SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-  167 (339)
Q Consensus       102 ~~~L~nLs~~~~---~~~~---i~-------~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-  167 (339)
                      +.++-.+.....   ....   ..       +...+..+++.+.++.       ...++.+....+++|-+|+...+.+ 
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-------~r~~~~i~~~l~RiLP~Lt~G~~e~m  264 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-------VRSNPQILQALARILPFLTYGNEEKM  264 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-------ccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence            555555442111   1110   00       1123556666665421       1146888999999999999865433 


Q ss_pred             HHHHhcCcHHHHHHHhhc---cccCchHHHHHHHHHHHhhcCCH---hhhHHHHhhCCcHHHHHHHhhcCCh--------
Q 048113          168 SPIVSSGVTYCLLQLIHS---SEKSSGLTEKAIALLENIVSSSE---DALQEIAATCGAIRALVETIEEGSP--------  233 (339)
Q Consensus       168 ~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L~n~l~~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~--------  233 (339)
                      +.+++.  +.+.+++=+.   ..++......+..-+.+.+..+.   .-|..+.+ .|++...++.|...-|        
T Consensus       265 ~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~  341 (802)
T PF13764_consen  265 DALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSP  341 (802)
T ss_pred             HHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCH
Confidence            333331  1222221110   01123444455555554454333   44677786 8999999998865322        


Q ss_pred             HH--------HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHHHHHHhccC
Q 048113          234 QC--------KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       234 ~~--------~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~  293 (339)
                      +-        ...++..|.-++....+  .+.++..+.+|.+=.|=... +..+=..|-.+|..|+.+.
T Consensus       342 eWk~~l~~psLp~iL~lL~GLa~gh~~--tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  342 EWKEFLSRPSLPYILRLLRGLARGHEP--TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHhcCHH--HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            22        23567777888877544  23446667776665553322 3444466777777777644

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.18  E-value=0.071  Score=53.60  Aligned_cols=165  Identities=16%  Similarity=0.161  Sum_probs=96.9

Q ss_pred             cCCCCHHHHHHHHHHHHhhcC-C-CCChHHHHhc-C--------cHHHHHHHhhccccC--chHHHHHHHHHHHhhcCCH
Q 048113          142 YGRISVQAKIDAIATLHNLST-C-HQLISPIVSS-G--------VTYCLLQLIHSSEKS--SGLTEKAIALLENIVSSSE  208 (339)
Q Consensus       142 ~~~~~~~~~~~a~~~L~nLs~-~-~~~~~~i~~~-g--------~i~~Lv~ll~~~~~~--~~~~~~a~~~L~n~l~~~~  208 (339)
                      .++.+.+++.+|..+|.+++. + ++.-..+.+. .        .+..|...+...+.+  .+-.+.-++.|.+++-..+
T Consensus       866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e  945 (1233)
T KOG1824|consen  866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE  945 (1233)
T ss_pred             cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence            477888999999999999977 3 2333333332 0        222333334332211  2234455555655555555


Q ss_pred             hhhHHHHhh----------CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113          209 DALQEIAAT----------CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA  278 (339)
Q Consensus       209 ~~~~~i~~~----------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  278 (339)
                      ++.+.++.+          ...+|.|-..+.++.+..+..++.+........+.....  .....+.....++++++.++
T Consensus       946 egtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~--~lk~~ig~fl~~~~dpDl~V 1023 (1233)
T KOG1824|consen  946 EGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDP--LLKQQIGDFLKLLRDPDLEV 1023 (1233)
T ss_pred             hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCH--HHHHHHHHHHHHHhCCchhH
Confidence            554444321          224577777777777777777777765544443332222  22335667788899999999


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113          279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI  314 (339)
Q Consensus       279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~  314 (339)
                      ++.|..++...+++.+      ..-.+.+..+++.+
T Consensus      1024 rrvaLvv~nSaahNKp------slIrDllpeLLp~L 1053 (1233)
T KOG1824|consen 1024 RRVALVVLNSAAHNKP------SLIRDLLPELLPLL 1053 (1233)
T ss_pred             HHHHHHHHHHHHccCH------hHHHHHHHHHHHHH
Confidence            9999999988887643      23444444444443

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0019  Score=61.92  Aligned_cols=248  Identities=17%  Similarity=0.191  Sum_probs=141.2

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hH-----H
Q 048113           44 LISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KL-----E  117 (339)
Q Consensus        44 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~-----~  117 (339)
                      |..+..+.+..++..|+..|..|+.+..-.+.      .....++++...+..+|..|+..++-.+.-.+. .+     .
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            44444444555555555555555443221111      235567888888888999998887766642211 11     0


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                      =....+...+...+..           .+..++..|+.+|..+-. +.+...+-.+    .+++.-++.+-   .-.+..
T Consensus       277 kl~D~aF~~vC~~v~D-----------~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr---~ahkrp  338 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRD-----------RSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKR---TAHKRP  338 (823)
T ss_pred             hhHHHHHHHHHHHHhc-----------CceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhh---hcccch
Confidence            0123356667777777           678888888888887644 2232222111    11222111110   000111


Q ss_pred             HHHHHHhh--c------------CCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcC
Q 048113          197 IALLENIV--S------------SSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEG  262 (339)
Q Consensus       197 ~~~L~n~l--~------------~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g  262 (339)
                      -.... .-  +            ..++.-..+.. .|+=.++|.-|++.--+++..|+..++.|+..++. ...     .
T Consensus       339 k~l~s-~GewSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA~-----~  410 (823)
T KOG2259|consen  339 KALYS-SGEWSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FAV-----R  410 (823)
T ss_pred             HHHHh-cCCcccCccccccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cHH-----H
Confidence            11111 11  0            01111223444 67778888888877778999999999999987654 322     2


Q ss_pred             ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHH
Q 048113          263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVE  330 (339)
Q Consensus       263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~  330 (339)
                      .+.-|+.++++....++.+|...|..++.+-.       +..+.++.+...+.--..++++..+.+|.
T Consensus       411 aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  411 ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            57889999999999999999999999988642       44555555544442223555655555554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.07  E-value=0.22  Score=45.05  Aligned_cols=216  Identities=15%  Similarity=0.148  Sum_probs=125.8

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh--cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           85 VLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS--SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      -.+..+.......|+.++..+.++.........+.+  ...+..+.+.++.           +..+-+..|+.++.-++.
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-----------g~~~E~~lA~~~l~Ll~l  115 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-----------GKSEEQALAARALALLAL  115 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHhh
Confidence            344445556678999999999888754444344432  3467788888887           555667778888777765


Q ss_pred             C---CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC----CHhhhHHHHhhCCcHHHHHH--Hhhc-C-
Q 048113          163 C---HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS----SEDALQEIAATCGAIRALVE--TIEE-G-  231 (339)
Q Consensus       163 ~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~----~~~~~~~i~~~~g~i~~Lv~--lL~~-~-  231 (339)
                      .   ......+++ ...|.|.+.+.++....+.+..|+.+|+ .++.    .++......+   .+..+..  ..+. + 
T Consensus       116 tlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLa-i~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~  190 (309)
T PF05004_consen  116 TLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALA-ICTFVGGSDEEETEELME---SLESIFLLSILKSDGN  190 (309)
T ss_pred             hcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHH-HHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCC
Confidence            4   244555555 4678888998886545566666666666 4432    2222221111   2222211  1221 1 


Q ss_pred             --------ChHHHHHHHHHHHHhhccCch-hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCc-chhhh
Q 048113          232 --------SPQCKEHAVAILLLICKSCRD-KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFG-SRSKQ  301 (339)
Q Consensus       232 --------~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~-~~~~~  301 (339)
                              ++.+.-.|+.+-.-|...-+. +...  .-...+|.|..++.+.+..+|..|-..|..|....... .....
T Consensus       191 ~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~--~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~  268 (309)
T PF05004_consen  191 APVVAAEDDAALVAAALSAWALLLTTLPDSKLED--LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLY  268 (309)
T ss_pred             cccccCCCccHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence                    234566666554444433222 1221  12457999999999999999999999999886543210 00111


Q ss_pred             hhhHHHHHHHHHHHhcC
Q 048113          302 LKNELVEQIMQEIDAEG  318 (339)
Q Consensus       302 ~~~~~~~~i~~~~~~~~  318 (339)
                      -..+.+.+.++.+..+.
T Consensus       269 ~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  269 EDMEELLEQLRELATDS  285 (309)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            23445555566665554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.07  E-value=0.12  Score=51.82  Aligned_cols=227  Identities=13%  Similarity=0.119  Sum_probs=145.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113           11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL   87 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv   87 (339)
                      +..|.....|..++..++..  ....+... .+...+..+ .+..+.++..|+++++..++  +..... ...+++..|.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~L~  536 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDGLL  536 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHHHH
Confidence            55666666777777766654  11111111 112222322 33456677888888777774  221111 1346677788


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh
Q 048113           88 EVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI  167 (339)
Q Consensus        88 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~  167 (339)
                      .+....+.++....+.+|+.....++....-.++...|.++.++...+         ++|.+...+-.++..|+....+.
T Consensus       537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s---------~DP~V~~~~qd~f~el~q~~~~~  607 (1005)
T KOG2274|consen  537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS---------EDPQVASLAQDLFEELLQIAANY  607 (1005)
T ss_pred             HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc---------CCchHHHHHHHHHHHHHHHHHhh
Confidence            887777888999999999999988777776667778888888775533         78888888888888887755544


Q ss_pred             HHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHh-hcCChHHHHHHHHHHH
Q 048113          168 SPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETI-EEGSPQCKEHAVAILL  244 (339)
Q Consensus       168 ~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~  244 (339)
                      ..+.+ -.+|.++..|+.+..  +..+..-++.+|...+...|.--....- .-++|++.+.. .+++.....++-.||.
T Consensus       608 g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLr  685 (1005)
T KOG2274|consen  608 GPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLR  685 (1005)
T ss_pred             cchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHH
Confidence            44433 379999999977531  2456666777776334334332222222 24678888855 4566788888999999


Q ss_pred             HhhccCch
Q 048113          245 LICKSCRD  252 (339)
Q Consensus       245 ~l~~~~~~  252 (339)
                      .+.....+
T Consensus       686 a~Is~~~e  693 (1005)
T KOG2274|consen  686 ALISVTLE  693 (1005)
T ss_pred             HHHhcCHH
Confidence            88876443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.06  E-value=0.0016  Score=42.41  Aligned_cols=55  Identities=16%  Similarity=0.076  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           95 TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        95 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      +.+|..|+++|.+++...+....-.....++.|+.+|++           ++..++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-----------~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-----------DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-----------SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHhcC
Confidence            468999999999988766554444567789999999988           6779999999999875

...

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.00  E-value=0.23  Score=47.52  Aligned_cols=291  Identities=12%  Similarity=0.076  Sum_probs=169.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            6 MDNLLNGERETQIQAANELGKLSRR-QKHKLV--ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         6 v~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      -..+++++|.-|..|+.++..+.++ +.....  =...+|.+..+..++.-.+...++|+++.++.+   ....|-..|-
T Consensus       372 Eqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~H  448 (858)
T COG5215         372 EQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGH  448 (858)
T ss_pred             HHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCcccc
Confidence            3457789999999999999999987 333332  256778888888877778999999999999984   2333434455


Q ss_pred             hHHHHHhhc---CCChhHHHHHHHHHHHHhcCccc-h---HH-HHh--cchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           83 VPVLLEVLQ---CQSTTLIELTVAAMLILSSCLEN-K---LE-IAS--SGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        83 i~~Lv~lL~---~~~~~~~~~a~~~L~nLs~~~~~-~---~~-i~~--~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      ++..++-..   .+.|....++.|...||..+-.. -   +. +..  ...+..|++.-....         ++...|..
T Consensus       449 l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~---------Ne~n~R~s  519 (858)
T COG5215         449 LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL---------NESNLRVS  519 (858)
T ss_pred             ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc---------cchhHHHH
Confidence            555554322   22466788899999999853221 1   11 111  123444444332211         35567777


Q ss_pred             HHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcc----------c---cCchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113          153 AIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSS----------E---KSSGLTEKAIALLENIVSSSEDALQEIAATC  218 (339)
Q Consensus       153 a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~----------~---~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~  218 (339)
                      +..+|..|.. .++....+. +|+.....+-|..+          +   ..++++.+-+.+|...+...+...+...  .
T Consensus       520 ~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~--D  596 (858)
T COG5215         520 LFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE--D  596 (858)
T ss_pred             HHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH--H
Confidence            7888887754 444332221 12222222222110          0   0133444445555533333322222221  1


Q ss_pred             CcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCchhHHHHHH--hcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCC
Q 048113          219 GAIRALVETIEEGS-PQCKEHAVAILLLICKSCRDKYRSSIL--KEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF  295 (339)
Q Consensus       219 g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  295 (339)
                      -...-++++|++.. .-+......++.+++..-+    +.+.  ....+|.|.+-++..+..+-..|++...-|++.=+.
T Consensus       597 ~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~----e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~  672 (858)
T COG5215         597 QLMELFIRILESTKPTTAFGDVYTAISALSTSLE----ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT  672 (858)
T ss_pred             HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence            24556677777753 3345556666666664322    2332  357899999989888888889999999888874321


Q ss_pred             cchhhhhhhHHHHHHHHHHHhc
Q 048113          296 GSRSKQLKNELVEQIMQEIDAE  317 (339)
Q Consensus       296 ~~~~~~~~~~~~~~i~~~~~~~  317 (339)
                        ...-..+.....+++.+..+
T Consensus       673 --df~~y~d~~ms~LvQ~lss~  692 (858)
T COG5215         673 --DFNIYADVLMSSLVQCLSSE  692 (858)
T ss_pred             --hHHHHHHHHHHHHHHHhcCh
Confidence              23335567777777777643

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.98  E-value=0.024  Score=55.36  Aligned_cols=247  Identities=13%  Similarity=0.203  Sum_probs=141.6

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhccCCcchh---hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHH
Q 048113           43 PLISMLCSQDYEAIEAALLSLLSLACGSERNK---IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEI  118 (339)
Q Consensus        43 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i  118 (339)
                      ..+..|++.++.++..|+..+..++. --..+   ..+...|+|  |...|....+++.-..+.+++.+...-.- +..=
T Consensus       803 tiL~rLnnksa~vRqqaadlis~la~-Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  803 TILWRLNNKSAKVRQQAADLISSLAK-VLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHH-HHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            34456778899999999999998887 23333   234444543  66778888888776666666555432211 1100


Q ss_pred             HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCC---hHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113          119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQL---ISPIVSSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      --.+.+|.|..+|++           .+.+++++++..+..++.. ++.   |.++.=+   --|+.+|+++  ...+++
T Consensus       880 Pi~dllPrltPILkn-----------rheKVqen~IdLvg~IadrgpE~v~aREWMRIc---feLlelLkah--kK~iRR  943 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKN-----------RHEKVQENCIDLVGTIADRGPEYVSAREWMRIC---FELLELLKAH--KKEIRR  943 (1172)
T ss_pred             ChhhhcccchHhhhh-----------hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHH--HHHHHH
Confidence            125689999999999           8999999999999999874 442   4555332   3477788776  368888


Q ss_pred             HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH--HHHHHhhccCchhHHHHHHhcCChHHHHHhhh
Q 048113          195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV--AILLLICKSCRDKYRSSILKEGVMPGLLQLSV  272 (339)
Q Consensus       195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~--~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~  272 (339)
                      +|..+++ .++.      .+.- .+++..|++-|+.  .+.|...+  .++.-.+..+++        ..++|.|+.=-+
T Consensus       944 aa~nTfG-~Iak------aIGP-qdVLatLlnnLkv--qeRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneYr 1005 (1172)
T KOG0213|consen  944 AAVNTFG-YIAK------AIGP-QDVLATLLNNLKV--QERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEYR 1005 (1172)
T ss_pred             HHHhhhh-HHHH------hcCH-HHHHHHHHhcchH--HHHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhcc
Confidence            8888888 3321      1111 1233333333332  22222222  122222221111        236777776666


Q ss_pred             cCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH---hcCccc-chHHHHHHHHH
Q 048113          273 DGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID---AEGDTV-AGTTLRLVEEM  332 (339)
Q Consensus       273 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~-~~~a~~~l~~~  332 (339)
                      .++..+|.-.+..|..+-..      .-++..+-+-.+...+.   -|-|.+ +++|..++.-+
T Consensus      1006 tPe~nVQnGVLkalsf~Fey------igemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1006 TPEANVQNGVLKALSFMFEY------IGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             CchhHHHHhHHHHHHHHHHH------HHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence            67777777666666555432      12244444444443332   344444 55666655443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.96  E-value=0.28  Score=47.03  Aligned_cols=255  Identities=16%  Similarity=0.173  Sum_probs=143.4

Q ss_pred             hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHH
Q 048113           48 LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRL  127 (339)
Q Consensus        48 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L  127 (339)
                      |++.-..+...+++.++.++..+  ....+.+ ..+..|-.+|.++....|-.|+++|-.|+...+.+..+....    +
T Consensus       273 ls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e----v  345 (898)
T COG5240         273 LSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE----V  345 (898)
T ss_pred             hcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh----H
Confidence            44445678888999999988843  1122221 256777778888888899999999999998666555443322    2


Q ss_pred             HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC
Q 048113          128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS  207 (339)
Q Consensus       128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~  207 (339)
                      -+++.+           .+..+...|+.+|.. ...+++...++.  .|+.+++=+.++  -..+...|+..|+++....
T Consensus       346 EsLIsd-----------~Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD~--FKiI~ida~rsLsl~Fp~k  409 (898)
T COG5240         346 ESLISD-----------ENRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSDG--FKIIAIDALRSLSLLFPSK  409 (898)
T ss_pred             HHHhhc-----------ccccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhccC--ceEEeHHHHHHHHhhCcHH
Confidence            334444           455555566655544 234455555443  244444444432  2345566666666322111


Q ss_pred             Hhhh-----HHHHhhCCc-------HHHHHHHhhcCChHHHHHHHHHHHHhhccCch-hHHHHHH----hcC--------
Q 048113          208 EDAL-----QEIAATCGA-------IRALVETIEEGSPQCKEHAVAILLLICKSCRD-KYRSSIL----KEG--------  262 (339)
Q Consensus       208 ~~~~-----~~i~~~~g~-------i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~----~~g--------  262 (339)
                      ....     ..+.+ .|+       +..+.+.++. .|..++.|+..|+.+..++.- +..-.+.    ++|        
T Consensus       410 ~~s~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~  487 (898)
T COG5240         410 KLSYLDFLGSSLLQ-EGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGK  487 (898)
T ss_pred             HHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcch
Confidence            1110     11223 343       4455555543 577788888888777654321 1111111    122        


Q ss_pred             ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc-CcccchHHHHHHHHH
Q 048113          263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE-GDTVAGTTLRLVEEM  332 (339)
Q Consensus       263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~a~~~l~~~  332 (339)
                      .+-.+...+--.+..++..|+.+|.-++-+.     .+......++.++..+.-| +|++|+.|...|..+
T Consensus       488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~-----~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~  553 (898)
T COG5240         488 YVRHIYNRLILENNIVRSAAVQALSKFALNI-----SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM  553 (898)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhccCc-----cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence            2233333333356778888888887776543     2234455566666666544 578899988887654

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.96  E-value=0.0053  Score=51.16  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHhccCCcchhhHHhhc----------------CChHHHHHhhcCC------ChhHHHHHHHHHHHH
Q 048113           51 QDYEAIEAALLSLLSLACGSERNKIRIVKS----------------GIVPVLLEVLQCQ------STTLIELTVAAMLIL  108 (339)
Q Consensus        51 ~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~----------------g~i~~Lv~lL~~~------~~~~~~~a~~~L~nL  108 (339)
                      ........+++.|.|+++ .+..+..+.+.                ..+..|+..+..+      ...-..+.+.++.|+
T Consensus         7 ~~~~~adl~~MLLsNlT~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTR-SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCcchHHHHHHHHHHhcc-chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            344566678888899998 56666655433                2466777766551      234567788999999


Q ss_pred             hcCccchHHHHhc--ch--HHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc---CcHHHHHH
Q 048113          109 SSCLENKLEIASS--GA--IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS---GVTYCLLQ  181 (339)
Q Consensus       109 s~~~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~---g~i~~Lv~  181 (339)
                      +..+..|..+.+.  +.  +.+|+.++.+           .+.--|.-++.+|.|+|.+.+....+...   ++++.|+-
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~-----------~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl  154 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEH-----------KSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL  154 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhcc-----------CcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence            9999999988854  34  7788888877           67778888999999999999888888763   45555554


Q ss_pred             Hhh
Q 048113          182 LIH  184 (339)
Q Consensus       182 ll~  184 (339)
                      -|.
T Consensus       155 PLa  157 (192)
T PF04063_consen  155 PLA  157 (192)
T ss_pred             hcc
Confidence            444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.94  E-value=0.3  Score=49.37  Aligned_cols=317  Identities=14%  Similarity=0.156  Sum_probs=175.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      ++.-|.+....+|.+|+-+|+.++.. ++..+.+  .+.-|++=|.. ..+...+.-.++|..++.. ...|.--.-...
T Consensus       179 l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~--li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~-ag~r~~~h~~~i  255 (1233)
T KOG1824|consen  179 LLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE--LIEHLLKGLSNRTQMSATRTYIQCLAAICRQ-AGHRFGSHLDKI  255 (1233)
T ss_pred             HhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhccCCCCchHHHHHHHHHHHHHHHH-hcchhhcccchh
Confidence            44455677888999999999999987 5554432  34445544433 3445555566777777772 222222222357


Q ss_pred             hHHHHHhh---cCCChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCC-----CCCCC------------C
Q 048113           83 VPVLLEVL---QCQSTTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGD-----LADDD------------N  140 (339)
Q Consensus        83 i~~Lv~lL---~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~-----~~~~~------------~  140 (339)
                      +|.+.+..   +..++++++.++.++..+....+  ..|.  ....+..+++.+..+     ++++|            +
T Consensus       256 vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp--~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde  333 (1233)
T KOG1824|consen  256 VPLVADYCNKIEEDDDELREYCLQALESFLRRCP--KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDE  333 (1233)
T ss_pred             hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh--hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccch
Confidence            89999988   66788999999999988775322  1221  233555666666432     11111            1


Q ss_pred             --ccCC----CCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH---hhcCC---
Q 048113          141 --SYGR----ISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN---IVSSS---  207 (339)
Q Consensus       141 --~~~~----~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n---~l~~~---  207 (339)
                        +..+    -++.+|..|++++..+.. ..+.-..+.+. .-|.++.-++..+  +.++.....++-.   .....   
T Consensus       334 ~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkERE--EnVk~dvf~~yi~ll~qt~~~~~~  410 (1233)
T KOG1824|consen  334 QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKERE--ENVKADVFHAYIALLKQTRPVIEV  410 (1233)
T ss_pred             hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHh--hhHHHHHHHHHHHHHHcCCCCccc
Confidence              1122    256799999999999865 44555555544 3366777776642  4444433333221   22111   


Q ss_pred             ------------HhhhHHHHhh-CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-
Q 048113          208 ------------EDALQEIAAT-CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-  273 (339)
Q Consensus       208 ------------~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-  273 (339)
                                  +.++..+.++ .-.+..+-+.+++.+.+.+..+...|..+....+...-+  ..-..+|.+..-+.+ 
T Consensus       411 ~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~--~~~slvpgI~~~l~Dk  488 (1233)
T KOG1824|consen  411 LADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ--HIPSLVPGIIYSLNDK  488 (1233)
T ss_pred             ccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh--cccccchhhhhhcCCc
Confidence                        1111111110 112344455555555556666666666666544331111  113467777776665 


Q ss_pred             -CCHHHHHHHHHHHHHH-hccCCCcchhhhhhhHHHHHHHHHHH-hcC---cccchHHHHHHHHHHHHhc
Q 048113          274 -GTWRAKNMARDLLLLL-RDCSSFGSRSKQLKNELVEQIMQEID-AEG---DTVAGTTLRLVEEMIAKLS  337 (339)
Q Consensus       274 -~~~~~~~~A~~~L~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~---~~~~~~a~~~l~~~v~~~~  337 (339)
                       .++..+..|...|.+. ..+++.      .....+..+...+. .-|   -++..+|..++.+.|+.+-
T Consensus       489 Ssss~~ki~~L~fl~~~L~s~~p~------~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir  552 (1233)
T KOG1824|consen  489 SSSSNLKIDALVFLYSALISHPPE------VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR  552 (1233)
T ss_pred             cchHHHHHHHHHHHHHHHhcCChh------hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc
Confidence             3466678888877554 343331      22334444444443 123   4557778888888887653

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.94  E-value=0.11  Score=46.98  Aligned_cols=194  Identities=18%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC---ccch
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC---LENK  115 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~~  115 (339)
                      +...+..+...+...|+.|+..+.++-.+. .....+.+  .-.+..+.+.++.+..+-+..|+.++.-++..   ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            334455566678899999999998888732 22222322  24578888888888766677777777777643   1223


Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhc-CcHHHHHHH--hhcc-----
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSS-GVTYCLLQL--IHSS-----  186 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~-g~i~~Lv~l--l~~~-----  186 (339)
                      ..+.+ ...|.|.+++...+         .++..+..++.+|.-++.. ...-..+.+. ..++.+...  .+..     
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s---------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~  193 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSS---------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPV  193 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCc---------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence            33333 46788888887742         5667777777777766552 2222222211 122222111  2211     


Q ss_pred             ---ccCchHHHHHHHHHHHhh-cCCHhh-hHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          187 ---EKSSGLTEKAIALLENIV-SSSEDA-LQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       187 ---~~~~~~~~~a~~~L~n~l-~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                         .+++.+...|+.+-+ ++ +..+.. .....  ...++.|+.+|++++..++..|-.+|+-+..
T Consensus       194 ~~~~~~~~l~~aAL~aW~-lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  194 VAAEDDAALVAAALSAWA-LLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             ccCCCccHHHHHHHHHHH-HHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               113457777776666 33 333432 23333  3579999999999999999999888877753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.91  E-value=0.24  Score=42.93  Aligned_cols=232  Identities=15%  Similarity=0.140  Sum_probs=133.0

Q ss_pred             ChhHHHHHHHHHHHHhcCccc-hHHHH-hcchHHHHHHHh-cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113           94 STTLIELTVAAMLILSSCLEN-KLEIA-SSGAIQRLVEIL-NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPI  170 (339)
Q Consensus        94 ~~~~~~~a~~~L~nLs~~~~~-~~~i~-~~g~i~~Lv~ll-~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i  170 (339)
                      +++.|+.|+.-|..--..-+. ...+- ..|.+..|++=+ .-...-...........-.-+|+..|..++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            466777654444333222222 22232 457777666522 221000000000011233345777777888999999999


Q ss_pred             HhcCcHHHHHHHhhcccc---CchHHHHHHHHHHHhhcC--CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113          171 VSSGVTYCLLQLIHSSEK---SSGLTEKAIALLENIVSS--SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL  245 (339)
Q Consensus       171 ~~~g~i~~Lv~ll~~~~~---~~~~~~~a~~~L~n~l~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  245 (339)
                      .++.+.-.|..+|...++   .+.++-.++++++ -+.+  +++....+.+ .+.+|..++.++.+++..+..|..++..
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIg-aLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIG-ALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHH-HHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHH-HHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999988888888866543   2567788999999 5554  3445555665 7999999999999999999999999987


Q ss_pred             hhccCchhHHH-------HHHh-cCChHHHH-HhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113          246 ICKSCRDKYRS-------SILK-EGVMPGLL-QLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       246 l~~~~~~~~~~-------~~~~-~g~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  316 (339)
                      +-.++  .+-+       ++.. ..++..++ .+..+.+++.-+....+-..|++++.    .    .+.+.+.+....-
T Consensus       166 IL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr----a----r~aL~~~LP~~Lr  235 (262)
T PF04078_consen  166 ILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR----A----REALRQCLPDQLR  235 (262)
T ss_dssp             HHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT----H----HHHHHHHS-GGGT
T ss_pred             HHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH----H----HHHHHHhCcHHHh
Confidence            75542  1222       2222 22333333 34667788888898999888888763    1    3333343333334


Q ss_pred             cC---ccc--chHHHHHHHHHHHHhc
Q 048113          317 EG---DTV--AGTTLRLVEEMIAKLS  337 (339)
Q Consensus       317 ~~---~~~--~~~a~~~l~~~v~~~~  337 (339)
                      ||   .-+  -..+++.+..++..++
T Consensus       236 d~~f~~~l~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  236 DGTFSNILKDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             SSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            44   111  2237788877776654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.89  E-value=0.18  Score=43.16  Aligned_cols=149  Identities=14%  Similarity=0.037  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHH
Q 048113           54 EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-----STTLIELTVAAMLILSSCLEN--KLEIASSGAIQR  126 (339)
Q Consensus        54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~  126 (339)
                      .-..+|+..|..+++ .|+.|..|.++-.--.|-++|...     .+-+|..+++.+..|...++-  ...+...+.||.
T Consensus        94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            445678888888899 599999999998766666666433     356899999999999965542  344558899999


Q ss_pred             HHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-Cc-------HHHHHHHhhccccCchHHHHHHH
Q 048113          127 LVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-GV-------TYCLLQLIHSSEKSSGLTEKAIA  198 (339)
Q Consensus       127 Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~-------i~~Lv~ll~~~~~~~~~~~~a~~  198 (339)
                      .++.+..           ++...+..|..++..+-.++.+-..+++. .-       +..++.-+.+. ++..+..++++
T Consensus       173 CLrime~-----------GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-ps~RllKhviR  240 (293)
T KOG3036|consen  173 CLRIMES-----------GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM-PSPRLLKHVIR  240 (293)
T ss_pred             HHHHHhc-----------ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Confidence            9999999           89999999999999988888887777664 32       23333333332 36788999999


Q ss_pred             HHHHhhcCCHhhhHHHHh
Q 048113          199 LLENIVSSSEDALQEIAA  216 (339)
Q Consensus       199 ~L~n~l~~~~~~~~~i~~  216 (339)
                      +.- .++.+++.|..+..
T Consensus       241 cYl-rLsdnprar~aL~~  257 (293)
T KOG3036|consen  241 CYL-RLSDNPRARAALRS  257 (293)
T ss_pred             HHH-HhcCCHHHHHHHHh
Confidence            999 79999988877753

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.89  E-value=0.013  Score=48.79  Aligned_cols=124  Identities=15%  Similarity=0.048  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHhhcCCCCChHHHHhc----------------CcHHHHHHHhhccc----cCchHHHHHHHHHHHhhc
Q 048113          146 SVQAKIDAIATLHNLSTCHQLISPIVSS----------------GVTYCLLQLIHSSE----KSSGLTEKAIALLENIVS  205 (339)
Q Consensus       146 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~----------------g~i~~Lv~ll~~~~----~~~~~~~~a~~~L~n~l~  205 (339)
                      .......++..|.||++.++.+..+.+.                ..+..|++.+..+.    ....-......++. |++
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~-NlS   86 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA-NLS   86 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH-Hhc
Confidence            4446667888999999988888766544                25678888876611    12445677889999 899


Q ss_pred             CCHhhhHHHHhhC-Cc--HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh---cCChHHHHHhhh
Q 048113          206 SSEDALQEIAATC-GA--IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK---EGVMPGLLQLSV  272 (339)
Q Consensus       206 ~~~~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~g~i~~L~~ll~  272 (339)
                      ..+++|..+.+.. +.  +..|+-++++.+...+.-+++++.|+|++...  -..+..   .+++|.|+--+-
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~--H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS--HEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH--HHHhcCchhhhhHHHHHhhcc
Confidence            9999999998632 33  67788888888888889999999999987533  344444   255666554433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.86  E-value=0.37  Score=46.15  Aligned_cols=262  Identities=12%  Similarity=0.054  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcC----ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113           13 ERETQIQAANELGKLSRRQKHKLVERG----IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE   88 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g----~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~   88 (339)
                      +..+|..|+.+|.+-....+..|...+    .+...++.-++++.+++..|..+|..+-.-+...-....+.-......+
T Consensus       191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~  270 (858)
T COG5215         191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGR  270 (858)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556788888888884444444343333    2333345556779999999999998776643444444445545556667


Q ss_pred             hhcCCChhHHHHHHHHHHHHhcCc-cchH----------------HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113           89 VLQCQSTTLIELTVAAMLILSSCL-ENKL----------------EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI  151 (339)
Q Consensus        89 lL~~~~~~~~~~a~~~L~nLs~~~-~~~~----------------~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~  151 (339)
                      .++++++++...|...-.-++..+ +...                .-.-.+.+|.|+++|.+.+.    ++..++...-.
T Consensus       271 ~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e----d~~~DdWn~sm  346 (858)
T COG5215         271 FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE----DYYGDDWNPSM  346 (858)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC----Cccccccchhh
Confidence            788888888777765443332211 1000                01124578999999966321    11123444555


Q ss_pred             HHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccc--cCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHh
Q 048113          152 DAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSE--KSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETI  228 (339)
Q Consensus       152 ~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL  228 (339)
                      .|..+|.-.+....  ..     .+.+...+....-  ++-.-++.+..+++..+-. +...+..++.  .++|.+...+
T Consensus       347 aA~sCLqlfaq~~g--d~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m  417 (858)
T COG5215         347 AASSCLQLFAQLKG--DK-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP--QALPGIENEM  417 (858)
T ss_pred             hHHHHHHHHHHHhh--hH-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH--hhhHHHHHhc
Confidence            55555554433221  12     2333333332211  1223467788888833322 2345666774  6899999999


Q ss_pred             hcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhc---CCHHHHHHHHHHHHHHhcc
Q 048113          229 EEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVD---GTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       229 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~~  292 (339)
                      .++.-.+++.++||+..++.+    . ..++. .|-++..+.-..-   +.|..-.+..|...+|.++
T Consensus       418 ~D~~l~vk~ttAwc~g~iad~----v-a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         418 SDSCLWVKSTTAWCFGAIADH----V-AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH  480 (858)
T ss_pred             ccceeehhhHHHHHHHHHHHH----H-HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence            888888999999999999854    2 23343 6666666654332   3566667777777777654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.85  E-value=0.13  Score=43.97  Aligned_cols=149  Identities=13%  Similarity=0.033  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHH
Q 048113           15 ETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ-----DYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVL   86 (339)
Q Consensus        15 ~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~L   86 (339)
                      .-...|+..|.-++.+  .|..|.++-+--.+-.+|...     .+..|..++.+++.|.+.+++. -..+...++||..
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            3445667777777776  899999988777777777643     5678999999999999954443 3345567999999


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh--------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS--------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      ++.++.+++..+..|..++..+..++.+-..+..        ...+..++..+.+.          .++...++++++..
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~----------ps~RllKhviRcYl  243 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM----------PSPRLLKHVIRCYL  243 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHH
Confidence            9999999999999999999999888877554442        22445555555443          78899999999999


Q ss_pred             hhcCCCCChHHHHhc
Q 048113          159 NLSTCHQLISPIVSS  173 (339)
Q Consensus       159 nLs~~~~~~~~i~~~  173 (339)
                      +|+.++..|..+..+
T Consensus       244 rLsdnprar~aL~~c  258 (293)
T KOG3036|consen  244 RLSDNPRARAALRSC  258 (293)
T ss_pred             HhcCCHHHHHHHHhh
Confidence            999998877766553

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.69  E-value=0.19  Score=41.42  Aligned_cols=111  Identities=21%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh-HHHHHhhc
Q 048113           13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV-PVLLEVLQ   91 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i-~~Lv~lL~   91 (339)
                      +|.+|..++.+++.++..+..  .-...++.+...|+++++.+|..|+.+|.+|... +-.+    -.|-+ ..++.++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHHHHc
Confidence            578899999999999865211  1244578889999999999999999999999883 2222    12333 77888899


Q ss_pred             CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113           92 CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG  133 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~  133 (339)
                      .++++++..|...+..++..... ..+  ...++.++..+.+
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~~~~-~~i--~~~~~e~i~~l~~  112 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKKRNP-NII--YNNFPELISSLNN  112 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccc-hHH--HHHHHHHHHHHhC
Confidence            99999999999999998865211 111  2345555555544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.26  Score=50.94  Aligned_cols=227  Identities=18%  Similarity=0.180  Sum_probs=133.6

Q ss_pred             HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHHHhcch
Q 048113           47 MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS--GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIASSGA  123 (339)
Q Consensus        47 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~  123 (339)
                      +.++.+..+|..+.+.|..++.. +.......+.  .....|.+-+++.+...+...+.+|..|-...+. ..... ...
T Consensus       662 ~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~  739 (1176)
T KOG1248|consen  662 FENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKL  739 (1176)
T ss_pred             hhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence            34455889999999999999994 4443333332  3345555666666666777777777776643221 11111 223


Q ss_pred             HHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC------cHHHHHHHhhccccCchHHHHHH
Q 048113          124 IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG------VTYCLLQLIHSSEKSSGLTEKAI  197 (339)
Q Consensus       124 i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g------~i~~Lv~ll~~~~~~~~~~~~a~  197 (339)
                      |+.++=.++.           .+...+..|..+|..++.    .....+.|      .+...+..+.-+.-.+.....+.
T Consensus       740 I~EvIL~~Ke-----------~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as  804 (1176)
T KOG1248|consen  740 IPEVILSLKE-----------VNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVAS  804 (1176)
T ss_pred             HHHHHHhccc-----------ccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHH
Confidence            3333333344           788999999999998873    11111222      45555555544321223333333


Q ss_pred             HHHHHhhcCCHhhhHHHHh---hCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113          198 ALLENIVSSSEDALQEIAA---TCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG  274 (339)
Q Consensus       198 ~~L~n~l~~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~  274 (339)
                      .+++ .-..-.+. ..+.+   -.+.+..+...|.++++.+...|++.+..++...+.. .-.-...-.+|.+..+.++.
T Consensus       805 ~Iva-i~~il~e~-~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~-~l~~~~~~LL~sll~ls~d~  881 (1176)
T KOG1248|consen  805 DIVA-ITHILQEF-KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE-CLSPHLEELLPSLLALSHDH  881 (1176)
T ss_pred             HHHH-HHHHHHHH-hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH-HHhhhHHHHHHHHHHHHHhh
Confidence            2333 11111111 11111   0245566666777889999999999999998776542 22222234789999999999


Q ss_pred             CHHHHHHHHHHHHHHh-ccC
Q 048113          275 TWRAKNMARDLLLLLR-DCS  293 (339)
Q Consensus       275 ~~~~~~~A~~~L~~l~-~~~  293 (339)
                      +..++.+...++..|. +++
T Consensus       882 k~~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  882 KIKVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             hHHHHHHHHHHHHHHHHHhC
Confidence            9999999999996554 444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.63  E-value=0.059  Score=55.45  Aligned_cols=258  Identities=12%  Similarity=0.076  Sum_probs=150.3

Q ss_pred             CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc----CccchHHHHhcchHHHH
Q 048113           52 DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS----CLENKLEIASSGAIQRL  127 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~L  127 (339)
                      ..+.+..|+..|..|+.. -..  ...---++|.++.++..++..+|..|+.+|..+..    -++.-..|.-.-..|.|
T Consensus       436 ~~~tK~~ALeLl~~lS~~-i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L  512 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTY-IDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL  512 (1431)
T ss_pred             cchhHHHHHHHHHHHhhh-cch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence            567888999999999984 211  12223578999999999999999999999988753    12223334444567777


Q ss_pred             HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-------------------CCCC--hH------HHHhc-CcHHHH
Q 048113          128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-------------------CHQL--IS------PIVSS-GVTYCL  179 (339)
Q Consensus       128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-------------------~~~~--~~------~i~~~-g~i~~L  179 (339)
                      -.++.+.          ...-++..-+..|..|+.                   ++++  ..      ..-+. ..|+.+
T Consensus       513 ~~l~~d~----------~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~  582 (1431)
T KOG1240|consen  513 NHLLNDS----------SAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM  582 (1431)
T ss_pred             HhhhccC----------ccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence            7777652          122222222222222111                   1111  00      00000 123333


Q ss_pred             HHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHH
Q 048113          180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSIL  259 (339)
Q Consensus       180 v~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  259 (339)
                      +.-|-.++ ++-+++.-+..++ -||..- +|.  ....=.++.|+..|.+.+...+..-..-+.-+|..-+.    +-.
T Consensus       583 v~sLlsd~-~~~Vkr~Lle~i~-~LC~FF-Gk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~----rs~  653 (1431)
T KOG1240|consen  583 VSSLLSDS-PPIVKRALLESII-PLCVFF-GKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW----RSV  653 (1431)
T ss_pred             HHHHHcCC-chHHHHHHHHHHH-HHHHHh-hhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee----eeH
Confidence            33332221 2233333334455 333221 111  11123568888888887665555444444444444222    224


Q ss_pred             hcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH----hcCcccchHHHHHHHHHHHH
Q 048113          260 KEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID----AEGDTVAGTTLRLVEEMIAK  335 (339)
Q Consensus       260 ~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~a~~~l~~~v~~  335 (339)
                      +++.+|.|.+-+.++.+.+..+|+.++..|.+.+..       ..-.+.+|++.+.    --+.++|..+-.+++.+...
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll-------~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL-------RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc-------chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            567888888889999999999999999999998763       2334444444443    34699999999999998887


Q ss_pred             hcc
Q 048113          336 LST  338 (339)
Q Consensus       336 ~~~  338 (339)
                      |.+
T Consensus       727 ls~  729 (1431)
T KOG1240|consen  727 LSA  729 (1431)
T ss_pred             hhh
Confidence            764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.50  E-value=0.37  Score=39.73  Aligned_cols=93  Identities=14%  Similarity=0.066  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHh
Q 048113           52 DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEIL  131 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll  131 (339)
                      ++.+|.+++.+++-|+...+..-+     ..+|.+...|.++++.+|..|+.+|..|...+-.|.   +...+..++..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence            578999999999999985443222     247889999999999999999999999987655443   122347788888


Q ss_pred             cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113          132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTC  163 (339)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~  163 (339)
                      ..           .+++++..|..++..+...
T Consensus        73 ~D-----------~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VD-----------ENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cC-----------CCHHHHHHHHHHHHHHHHh
Confidence            77           7999999999999998765

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.49  E-value=0.39  Score=48.28  Aligned_cols=224  Identities=10%  Similarity=0.057  Sum_probs=145.2

Q ss_pred             cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHH
Q 048113           50 SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLV  128 (339)
Q Consensus        50 ~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv  128 (339)
                      +..|.....|.+++..++.....+...+-.  .+...+..+.- ..+.++..|+++++..+......+  ...+.+..|.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~  536 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLL  536 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHH
Confidence            346666668888888777743333322211  12223333333 345567777777766553222221  1345677788


Q ss_pred             HHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH
Q 048113          129 EILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE  208 (339)
Q Consensus       129 ~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~  208 (339)
                      ++...           .+.++...-+.+|+..++.+.-.....+.-+.|.++.++-....++.+...+-.++. -++...
T Consensus       537 qlas~-----------~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~-el~q~~  604 (1005)
T KOG2274|consen  537 QLASK-----------SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFE-ELLQIA  604 (1005)
T ss_pred             HHccc-----------ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHH
Confidence            88776           688899999999999998666666666777888888877655556677777777777 566655


Q ss_pred             hhhHHHHhhCCcHHHHHHHhhcCC----hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh-hhcCCHHHHHHHH
Q 048113          209 DALQEIAATCGAIRALVETIEEGS----PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL-SVDGTWRAKNMAR  283 (339)
Q Consensus       209 ~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~A~  283 (339)
                      .+...+.  +-.+|.+++.|..+.    ......++.+|.-+.+..++..-..+ -.-+.|++.+. +++++...-..+.
T Consensus       605 ~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l-~~~~FpaVak~tlHsdD~~tlQ~~~  681 (1005)
T KOG2274|consen  605 ANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL-ICYAFPAVAKITLHSDDHETLQNAT  681 (1005)
T ss_pred             HhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH-HHHHhHHhHhheeecCChHHHHhHH
Confidence            5555554  368999999998754    55566677777666655444333332 23578888877 6777777788899


Q ss_pred             HHHHHHhcc
Q 048113          284 DLLLLLRDC  292 (339)
Q Consensus       284 ~~L~~l~~~  292 (339)
                      .+|+.+-..
T Consensus       682 EcLra~Is~  690 (1005)
T KOG2274|consen  682 ECLRALISV  690 (1005)
T ss_pred             HHHHHHHhc
Confidence            999877554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.48  E-value=0.046  Score=47.48  Aligned_cols=98  Identities=13%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113           15 ETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL   90 (339)
Q Consensus        15 ~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL   90 (339)
                      .....|++.|.-++--   .|..+.....+..++.+|+ ...+.++..++.+|..+-.+++.|...|-+.+|+..+++++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            3456677888777653   9999999999999999994 45789999999999888888999999999999999999999


Q ss_pred             cCC--ChhHHHHHHHHHHHHhcCc
Q 048113           91 QCQ--STTLIELTVAAMLILSSCL  112 (339)
Q Consensus        91 ~~~--~~~~~~~a~~~L~nLs~~~  112 (339)
                      ++.  +.+++..+...|+-...++
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            876  5678888888887665433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.47  E-value=0.0062  Score=46.17  Aligned_cols=72  Identities=17%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             cCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHh
Q 048113           38 RGIIAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILS  109 (339)
Q Consensus        38 ~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs  109 (339)
                      -.++..|+++| .+.++.+...|+.-|+.++++.|..|..+-+.|+=..+..++.+++++++..|+.++..+.
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            34788899999 4558888899999999999988888888888899999999999999999999999987654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.44  E-value=0.17  Score=50.55  Aligned_cols=168  Identities=10%  Similarity=0.042  Sum_probs=117.0

Q ss_pred             hcCCChhHHHHHH-HHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChH
Q 048113           90 LQCQSTTLIELTV-AAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLIS  168 (339)
Q Consensus        90 L~~~~~~~~~~a~-~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~  168 (339)
                      +.+.+...+..|+ .++..++..++-..      ..+.+++....           .+.++++..-.=|.+.+...+...
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~t-----------rd~ElKrL~ylYl~~yak~~P~~~   90 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVAT-----------RDVELKRLLYLYLERYAKLKPELA   90 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHh-----------cCHHHHHHHHHHHHHHhccCHHHH
Confidence            5666665555555 45566666655222      45666666665           788888877766666666433111


Q ss_pred             HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      .+    ++..+.+=++++  ++.++--|++.++ .+-..     ++..  .+++++.+++.++++.++..|+.++..+-.
T Consensus        91 lL----avNti~kDl~d~--N~~iR~~AlR~ls-~l~~~-----el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~  156 (757)
T COG5096          91 LL----AVNTIQKDLQDP--NEEIRGFALRTLS-LLRVK-----ELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYR  156 (757)
T ss_pred             HH----HHHHHHhhccCC--CHHHHHHHHHHHH-hcChH-----HHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence            11    345555666653  5788888888888 43222     3442  578889999999999999999999999876


Q ss_pred             cCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          249 SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      -+    +....+.|.+..+..++.+.+|.+..+|...|..+-..
T Consensus       157 ld----~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         157 LD----KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cC----HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            53    25667788999999999999999999999998887543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.42  E-value=0.55  Score=44.09  Aligned_cols=195  Identities=16%  Similarity=0.152  Sum_probs=121.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhccCC---cchhhHHhhcCChHHHHHhhcCCC-------hhHHHHHHHHHHHHhcCc
Q 048113           43 PLISMLCSQDYEAIEAALLSLLSLACGS---ERNKIRIVKSGIVPVLLEVLQCQS-------TTLIELTVAAMLILSSCL  112 (339)
Q Consensus        43 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~nLs~~~  112 (339)
                      .+..+++..+.+.+-.|+-.+..+.++.   ..+|..+.++=|.+.+=+++.+.+       ...+..+...|.-+++.+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            3566777778888999999999999853   346888999988898888886542       235667777777777766


Q ss_pred             cc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCc
Q 048113          113 EN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSS  190 (339)
Q Consensus       113 ~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~  190 (339)
                      +-  .+.+  -+.||.|..++....+.+    ...+..+...+..+|...+..+.+...++..|+++.+.++-.-++-+.
T Consensus        95 ElAsh~~~--v~~IP~llev~~~~~d~d----~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~  168 (698)
T KOG2611|consen   95 ELASHEEM--VSRIPLLLEVMSKGIDTD----YEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSH  168 (698)
T ss_pred             hhccCHHH--HHhhhHHHHHHHhcCCCc----hhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCch
Confidence            53  3333  246889999886631100    001233778899999999999999999999999999997754332111


Q ss_pred             hHHHHHHHHHH---HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          191 GLTEKAIALLE---NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       191 ~~~~~a~~~L~---n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                      + ..-++.++-   .-+...++.-..+..   .|..+-.-+.......+...+..|..+-
T Consensus       169 d-~alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  169 D-MALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             h-HHHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            1 222222222   111222333333322   2344444444445566777777776443

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=96.39  E-value=0.59  Score=42.99  Aligned_cols=285  Identities=16%  Similarity=0.219  Sum_probs=152.0

Q ss_pred             HHHHHHHcCCC-HHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHh--cc--------CCHHHHHHHHHHHHHhccC
Q 048113            3 EMLMDNLLNGE-RETQIQAANELGKLSRR--QKHKLVERGIIAPLISML--CS--------QDYEAIEAALLSLLSLACG   69 (339)
Q Consensus         3 ~~Lv~~L~s~~-~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL--~~--------~~~~~~~~A~~~L~~Ls~~   69 (339)
                      +.+++.|..+. +.-+..-+..++.++++  .-..+.....+..|+.+.  ++        .+.++...|+++|+|+..+
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~  127 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH  127 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence            34566666555 34455666667767664  222222222233333332  11        1458899999999999998


Q ss_pred             CcchhhHHhhcCChHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCc-cch-HHHHhcchHHHHHHHhcCCCCCCCC--
Q 048113           70 SERNKIRIVKSGIVPVLLEVLQCQ-----STTLIELTVAAMLILSSCL-ENK-LEIASSGAIQRLVEILNGDLADDDN--  140 (339)
Q Consensus        70 ~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~-~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~--  140 (339)
                      ++..+..+.+......+++.+...     ...+...-++.|.-|..-+ ..| +.+++.+|++.+.+++..+.+.+.+  
T Consensus       128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n  207 (532)
T KOG4464|consen  128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN  207 (532)
T ss_pred             cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence            888888888887776666654321     2345666667777776433 334 4456889999999999876433321  


Q ss_pred             --ccCCCCHHHHHHHHHHHHhhcCCC-CChH--HHH---hc-CcHHHHHHHhhcccc-----------CchHHHHHHHHH
Q 048113          141 --SYGRISVQAKIDAIATLHNLSTCH-QLIS--PIV---SS-GVTYCLLQLIHSSEK-----------SSGLTEKAIALL  200 (339)
Q Consensus       141 --~~~~~~~~~~~~a~~~L~nLs~~~-~~~~--~i~---~~-g~i~~Lv~ll~~~~~-----------~~~~~~~a~~~L  200 (339)
                        ...+........++.++.|+..+. ....  .-.   -. +.....+..+.....           -+.+...++.++
T Consensus       208 ~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~  287 (532)
T KOG4464|consen  208 VPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVL  287 (532)
T ss_pred             CCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcc
Confidence              123344556667888888986532 2211  111   11 222222222211110           133455666665


Q ss_pred             HHhhcCCHhhhHH-HHhhCCc-HHHHHHHhhcC---------ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113          201 ENIVSSSEDALQE-IAATCGA-IRALVETIEEG---------SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       201 ~n~l~~~~~~~~~-i~~~~g~-i~~Lv~lL~~~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      .  .....++..+ +....|. ...+..+|...         ..+.......+|..+|..+.. . .......++|+|..
T Consensus       288 ~--~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~-~-Rkylr~qVLPPLrD  363 (532)
T KOG4464|consen  288 A--GAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRV-M-RKYLRQQVLPPLRD  363 (532)
T ss_pred             c--CCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHH-H-HHHHHHhcCCchhh
Confidence            5  1222222222 2111232 22333333221         122333456777777776433 3 44555668998876


Q ss_pred             hhhc-----------------CCHHHHHHHHHHHHHHhc
Q 048113          270 LSVD-----------------GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       270 ll~~-----------------~~~~~~~~A~~~L~~l~~  291 (339)
                      .-+.                 .+..++.-|+..|.-|++
T Consensus       364 V~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCK  402 (532)
T KOG4464|consen  364 VSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCK  402 (532)
T ss_pred             hhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhh
Confidence            5544                 234456666666666654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.33  Score=48.05  Aligned_cols=257  Identities=14%  Similarity=0.090  Sum_probs=129.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch--------h
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN--------K   74 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~--------~   74 (339)
                      +.+-++|.+..+.+..+|++++.++...+.+.+..  .+..|--++++..+.+|-.|.++|..+|...|..        -
T Consensus       248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE  325 (865)
T KOG1078|consen  248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLE  325 (865)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHH
Confidence            34556777889999999999998887653222222  7777778899999999999999999998743321        1


Q ss_pred             hHHhhc---CChHHHHHhhcCCChhHHHHHHHHHHHHhc--CccchHHH----H---------hcchHHHHHHHhcCCCC
Q 048113           75 IRIVKS---GIVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLEI----A---------SSGAIQRLVEILNGDLA  136 (339)
Q Consensus        75 ~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i----~---------~~g~i~~Lv~ll~~~~~  136 (339)
                      ..+-+.   -..+++-.+|..++..-...-...+.+..+  +++.|-.+    .         ..+.+.-|-.+|+++  
T Consensus       326 ~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~e--  403 (865)
T KOG1078|consen  326 SLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREE--  403 (865)
T ss_pred             hhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhc--
Confidence            111111   123334444444443333322233322221  11222111    0         112233333333332  


Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113          137 DDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIA  215 (339)
Q Consensus       137 ~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~  215 (339)
                              +..+.+.....++..... +++.|..     +...|..++.++    +....+..+|+ .+-....  ....
T Consensus       404 --------Gg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc----e~~~i~~rILh-lLG~EgP--~a~~  463 (865)
T KOG1078|consen  404 --------GGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC----EFTQIAVRILH-LLGKEGP--KAPN  463 (865)
T ss_pred             --------cCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc----cchHHHHHHHH-HHhccCC--CCCC
Confidence                    333444444444443332 3332222     123344444432    11222333333 2211100  0000


Q ss_pred             hhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113          216 ATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       216 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      . ...+..+-..+-=.+..++-.|+.+|.++...++. .++     .+...|.+.+.+.+..++++|.-.|.++.
T Consensus       464 P-skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~-l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  464 P-SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV-LLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             c-chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-ccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            0 12333333333334566778888999988854322 222     23334555688889999999999999987

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.32  E-value=0.15  Score=48.47  Aligned_cols=178  Identities=13%  Similarity=0.120  Sum_probs=116.7

Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      ...+...+.+++...+..+...|..++.+......++...++..|.+++.+...       ....+.....+.++..+-.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~-------~~~~~~L~~~L~af~elme  157 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV-------CMSSELLSTSLRAFSELME  157 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc-------chHHHHHHHHHHHHHHHHh
Confidence            456788888888888888999999999888888888899999999999988420       0134555566666665532


Q ss_pred             CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                      ..-.-=..+...+|.....+..-.-.+..+...|++.|- .+..+.. -+..+.+ .--++.|+.+++..+..++..|..
T Consensus       158 hgvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE-~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aia  235 (713)
T KOG2999|consen  158 HGVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLE-SLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIA  235 (713)
T ss_pred             hceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHH-HHHhCChHHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHH
Confidence            221111122233444444444322224667888999999 5555544 4444544 778999999999999999988888


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      .+-.+....++.-|..+.+.-....+..
T Consensus       236 l~nal~~~a~~~~R~~~~~~l~~~~~R~  263 (713)
T KOG2999|consen  236 LLNALFRKAPDDKRFEMAKSLEQKQFRN  263 (713)
T ss_pred             HHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence            7777765555544555555433333433

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.32  E-value=0.67  Score=43.55  Aligned_cols=128  Identities=15%  Similarity=0.171  Sum_probs=100.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH------HHHHHHhcCChHHHHHHhccC-------CHHHHHHHHHHHHHhccCCc
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR------QKHKLVERGIIAPLISMLCSQ-------DYEAIEAALLSLLSLACGSE   71 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~------~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~   71 (339)
                      +..++...+.+.|..|+-....+.++      +|+.+.+.-+.+-+-++|.+.       +...+..++..|..+|. .|
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~p   94 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VP   94 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Ch
Confidence            44566677888999999999998875      888899998999988888764       33567778888999988 56


Q ss_pred             chhhHHhhcCChHHHHHhhcCC-Chh------HHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC
Q 048113           72 RNKIRIVKSGIVPVLLEVLQCQ-STT------LIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG  133 (339)
Q Consensus        72 ~~~~~i~~~g~i~~Lv~lL~~~-~~~------~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~  133 (339)
                      +-...=--.+.||.|..++... +++      ..+.+..+|...+..+.+...++..|+++.+.++-.-
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence            5433322335789999988764 322      6788999999999999999999999999999987654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.30  E-value=0.014  Score=44.27  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113            3 EMLMDNL-LNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC   68 (339)
Q Consensus         3 ~~Lv~~L-~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~   68 (339)
                      +.|+.+| .+.|+....-|+.-|+.+.+.   .|..+.+.|+=..+.+++.+++++++..|+.++..+-.
T Consensus        46 k~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   46 KKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4688888 466888888899999999997   77777789999999999999999999999999876643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.29  E-value=0.24  Score=44.54  Aligned_cols=171  Identities=12%  Similarity=0.063  Sum_probs=111.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc-hhh-------
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER-NKI-------   75 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~-------   75 (339)
                      .++.-+++.++.+|..|+++|+-.+--.++..  ...++.+...++.+++.++..|++++.-+..-.+. .-.       
T Consensus        31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~  108 (298)
T PF12719_consen   31 LILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE  108 (298)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence            34456678999999999999998886422221  22355677777778999999999999877652221 111       


Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      .......+..+...+.+.+++++..|+..++.|-.......   ....+..|+-+.-++..       .++...+..-..
T Consensus       109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t-------~~~~~LrQ~L~~  178 (298)
T PF12719_consen  109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST-------EDNQRLRQCLSV  178 (298)
T ss_pred             cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc-------CCcHHHHHHHHH
Confidence            11223567788888888999999999999999876443322   13456666655544321       134555555555


Q ss_pred             HHHhhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113          156 TLHNLSTCHQLISPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       156 ~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~  186 (339)
                      .+-..+......+..+...+++.+-.+...+
T Consensus       179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  179 FFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            5566677655445555666777777776654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.28  E-value=0.052  Score=46.96  Aligned_cols=190  Identities=18%  Similarity=0.113  Sum_probs=129.4

Q ss_pred             CHHHHHHHHHHHHHHHHH--HHHHH--HhcCChHHHHH-Hhcc------C--CH---HHHHHHHHHHHHhccCCcchhhH
Q 048113           13 ERETQIQAANELGKLSRR--QKHKL--VERGIIAPLIS-MLCS------Q--DY---EAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~--~~~~i--~~~g~i~~Lv~-lL~~------~--~~---~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      +++.|..|+..|+.--+.  .-..+  ..-|.+..|++ ..+-      +  ++   .-..+|+..|..++. +|+.|..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            677788887766553222  22222  23677766654 2221      1  11   334567778888888 6999999


Q ss_pred             HhhcCChHHHHHhhcCCC-----hhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113           77 IVKSGIVPVLLEVLQCQS-----TTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA  149 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~  149 (339)
                      +.++...-.|-++|+..+     +.+|...++.++.|...++  .-..+...+.+|..++.+..           ++.-.
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~-----------GselS  155 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF-----------GSELS  155 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH-----------S-HHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh-----------ccHHH
Confidence            999999888888886543     4578889999999986443  23445588999999999998           78888


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHhc-C-------cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          150 KIDAIATLHNLSTCHQLISPIVSS-G-------VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       150 ~~~a~~~L~nLs~~~~~~~~i~~~-g-------~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                      +..|.-.+..+-.++.+-..+++. .       ++..++.-+... +++.+.++.+++.. -++.++..+..+.+
T Consensus       156 KtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~-pS~RLLKhIIrCYl-RLsdnprar~aL~~  228 (262)
T PF04078_consen  156 KTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ-PSPRLLKHIIRCYL-RLSDNPRAREALRQ  228 (262)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHH-HHTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC-CChhHHHHHHHHHH-HHccCHHHHHHHHH
Confidence            999999999887777766665553 2       344444444433 36888999999888 78999998888764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.27  E-value=0.057  Score=39.67  Aligned_cols=67  Identities=22%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh--cCChHHHHHhhhcCCHHHHHHHHHHHHHH
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVMPGLLQLSVDGTWRAKNMARDLLLLL  289 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~A~~~L~~l  289 (339)
                      ..+++++..+.+.+.+++..|+.+|.+++...    +..+..  ..+.+.|.+++.+.++.+|..|..+-+.|
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence            57899999999999999999999999998653    344443  56888999999999999987775444443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.26  E-value=0.23  Score=45.31  Aligned_cols=208  Identities=10%  Similarity=0.065  Sum_probs=147.8

Q ss_pred             hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchH--H--HHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113           75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKL--E--IASSGAIQRLVEILNGDLADDDNSYGRISVQA  149 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~--~--i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~  149 (339)
                      ..+...|.++.|+..|..-+-+.+..++.+..++.... +.+.  .  ......-+.+..++...          +++++
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy----------~~~di  139 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY----------ENPDI  139 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG----------GSTTT
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh----------cCccc
Confidence            35666789999999999999999999999998887533 2222  1  11111122223333443          56667


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh--CCcHHHHHHH
Q 048113          150 KIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT--CGAIRALVET  227 (339)
Q Consensus       150 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~--~g~i~~Lv~l  227 (339)
                      ...+-..|+..++.+...+.+.....+..+.+.++.+  .-++...|..++...+..++.........  ..++.....+
T Consensus       140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~L  217 (335)
T PF08569_consen  140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKL  217 (335)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888888888899999998874  58899999999998888888776666541  2456777889


Q ss_pred             hhcCChHHHHHHHHHHHHhhccCch-hHHHHHHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          228 IEEGSPQCKEHAVAILLLICKSCRD-KYRSSILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       228 L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      |.+++=-++..++..|..+-.+... ......+. ..-+..++.++++.+..+|..|-.+..-+..++.
T Consensus       218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred             ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence            9998888899999999998765433 12222232 3467778888999999999999999999988764

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.21  E-value=0.6  Score=43.23  Aligned_cols=219  Identities=17%  Similarity=0.165  Sum_probs=128.1

Q ss_pred             hHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHH-hcCccchHH
Q 048113           41 IAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLIL-SSCLENKLE  117 (339)
Q Consensus        41 i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nL-s~~~~~~~~  117 (339)
                      |..+++=+. +.+..+|..++-.|+.-+. ++..+..+..+|.+..+++.+.. ++......++.+++.+ +.+..+-..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            344444444 3456789999988988888 79999999999999999999944 4443555554555444 444444444


Q ss_pred             HHhcchHHHHHHHhcC--C---CCCCCCc----------------------------cCCCCHHHHHHHHHHHHhhc---
Q 048113          118 IASSGAIQRLVEILNG--D---LADDDNS----------------------------YGRISVQAKIDAIATLHNLS---  161 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~--~---~~~~~~~----------------------------~~~~~~~~~~~a~~~L~nLs---  161 (339)
                      +.+.+....+++++.-  .   ..+.+..                            .......-+..|..++-.++   
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~  181 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL  181 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence            4455666666777761  1   0111100                            00112223334444444442   


Q ss_pred             -----------C-CCCChHHHHhcCcHHHHHHHhhc----cc-----c-----CchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113          162 -----------T-CHQLISPIVSSGVTYCLLQLIHS----SE-----K-----SSGLTEKAIALLENIVSSSEDALQEIA  215 (339)
Q Consensus       162 -----------~-~~~~~~~i~~~g~i~~Lv~ll~~----~~-----~-----~~~~~~~a~~~L~n~l~~~~~~~~~i~  215 (339)
                                 . .+..++.+...|+++.++..+.+    ..     +     +......|+.+|-|.....+++...+.
T Consensus       182 ~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~  261 (361)
T PF07814_consen  182 REAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLL  261 (361)
T ss_pred             hhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence                       1 12336677788999999999863    10     0     122456788888865555666666665


Q ss_pred             hhC-CcHHHHH-HHhhc---CChHHHHHHHHHHHHhhccCchhHHHHHHhc
Q 048113          216 ATC-GAIRALV-ETIEE---GSPQCKEHAVAILLLICKSCRDKYRSSILKE  261 (339)
Q Consensus       216 ~~~-g~i~~Lv-~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  261 (339)
                      ... +.++.+. .++..   ........++..+.|++.+++. .++.+...
T Consensus       262 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~-~c~~~~s~  311 (361)
T PF07814_consen  262 SHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS-ACEEFASP  311 (361)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc-chHhhhhh
Confidence            422 2233332 23332   2344567889999999987754 45555544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.21  E-value=0.5  Score=45.81  Aligned_cols=180  Identities=14%  Similarity=0.165  Sum_probs=100.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113           11 NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL   90 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL   90 (339)
                      .++..++.-|+..|....+....  ....++..++.++.+++..+|..|.+.|-.+|+++++....++     ..|+++|
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL  105 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLL  105 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHH
Confidence            46777777788877776654000  1244678899999999999999999999999997777766664     5699999


Q ss_pred             cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcC-CCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCCh
Q 048113           91 QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNG-DLADDDNSYGRISVQAKIDAIATLHNLST--CHQLI  167 (339)
Q Consensus        91 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~  167 (339)
                      .++++.-...+-.+|..|...++       .+.+..+.+.+.. ++         ++..+|+.++..|..=-.  ..+.-
T Consensus       106 ~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~---------~de~~Re~~lkFl~~kl~~l~~~~~  169 (556)
T PF05918_consen  106 QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKS---------GDEQVRERALKFLREKLKPLKPELL  169 (556)
T ss_dssp             T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---H---------S-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred             hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhccc---------CchHHHHHHHHHHHHHHhhCcHHHh
Confidence            98887766666677766654333       2345556665541 11         677889998888864221  11111


Q ss_pred             H--HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-----CHhhhHHHHh
Q 048113          168 S--PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-----SEDALQEIAA  216 (339)
Q Consensus       168 ~--~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-----~~~~~~~i~~  216 (339)
                      .  .=.+.=++..+-+.|.+-  ...-......+|. .+..     ...++..+++
T Consensus       170 ~p~~E~e~~i~~~ikkvL~DV--TaeEF~l~m~lL~-~lk~~~~~~t~~g~qeLv~  222 (556)
T PF05918_consen  170 TPQKEMEEFIVDEIKKVLQDV--TAEEFELFMSLLK-SLKIYGGKQTIEGRQELVD  222 (556)
T ss_dssp             ---HHHHHHHHHHHHHHCTT----HHHHHHHHHHHH-TSGG---GSSHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH-hCccccccCChHHHHHHHH
Confidence            1  112222344555666552  1233444555555 4433     4455555543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.16  E-value=0.077  Score=46.13  Aligned_cols=100  Identities=13%  Similarity=0.161  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHh-cCccchHHHHhcchHHHHHHHh
Q 048113           54 EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVEIL  131 (339)
Q Consensus        54 ~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll  131 (339)
                      .....|++.|..++--+|..|..+.+..++..|+++|.. .++.++..++.+|..+. .+++|...+-+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            356678899999998889999999999999999999954 46788989998887766 5666777777899999999999


Q ss_pred             cCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113          132 NGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      ++..         .+.+++...+..|+-...
T Consensus       186 k~~~---------~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKS---------TDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             cccc---------ccHHHhHHHHHHHHHHHc
Confidence            9853         577888888888775543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.07  E-value=0.16  Score=50.74  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=111.8

Q ss_pred             HcCCCHHHHHHHHHHHHH-HHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113            9 LLNGERETQIQAANELGK-LSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL   86 (339)
Q Consensus         9 L~s~~~~~~~~a~~~L~~-l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L   86 (339)
                      |.+++...|..|.+.+-. .+.+ .     =.-..+.+++...+.|.+++.-----|.+.+..+|+-. .+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~-lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA-LL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH-HH----HHHHH
Confidence            345566777777766532 2222 1     01234455666667788888888778888888655221 11    45667


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC
Q 048113           87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL  166 (339)
Q Consensus        87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~  166 (339)
                      .+=++++++.+|..|++++..+=..+-      -...++++.+.+.+           .++.+|..|+-++.++=.  -.
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~~~~ik~~l~d-----------~~ayVRk~Aalav~kly~--ld  158 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRVKEL------LGNIIDPIKKLLTD-----------PHAYVRKTAALAVAKLYR--LD  158 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHccC-----------CcHHHHHHHHHHHHHHHh--cC
Confidence            777888999999999998866533111      13368888888888           789999999999988732  23


Q ss_pred             hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113          167 ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV  204 (339)
Q Consensus       167 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l  204 (339)
                      +...-+.|.+..+..++.+.  ++.+..+|+.+|. .+
T Consensus       159 ~~l~~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~-~i  193 (757)
T COG5096         159 KDLYHELGLIDILKELVADS--DPIVIANALASLA-EI  193 (757)
T ss_pred             HhhhhcccHHHHHHHHhhCC--CchHHHHHHHHHH-Hh
Confidence            34455668888888888774  5788889998888 44

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.01  E-value=0.1  Score=43.22  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc---------CCHHHHHHHHHHHHHhccC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS---------QDYEAIEAALLSLLSLACG   69 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~A~~~L~~Ls~~   69 (339)
                      +.++..|.+.....  +.+..|+...+.    --+.|++.||+..|+..|..         .+.......++++..+.. 
T Consensus        69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-  145 (187)
T PF06371_consen   69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-  145 (187)
T ss_dssp             HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-
T ss_pred             HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-
Confidence            35667776655443  333333333333    34566788999999998764         245788899999999999 


Q ss_pred             CcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHh
Q 048113           70 SERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILS  109 (339)
Q Consensus        70 ~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs  109 (339)
                      ++.+...+.. .+++..|+..|.+++..++..++.+|..++
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            6777777776 588999999999999999999999988765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=1.1  Score=46.15  Aligned_cols=255  Identities=18%  Similarity=0.157  Sum_probs=143.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +.|.+.|++.|-.+|-.|++.+..++.... .-....+|...++++.-. ++..-..|+-+|+.|+.. .--.-.. =..
T Consensus       344 e~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-GlLlps~-l~d  420 (1133)
T KOG1943|consen  344 EHLLSALSDTDTVVRWSAAKGLGRVTSRLP-PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GLLLPSL-LED  420 (1133)
T ss_pred             HHHHHhccCCcchhhHHHHHHHHHHHccCc-HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CCcchHH-HHH
Confidence            355666677888999999999999987511 112233455555544432 455666888888888883 1111000 014


Q ss_pred             ChHHHHHhhcCC--------ChhHHHHHHHHHHHHhcCcc-c--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113           82 IVPVLLEVLQCQ--------STTLIELTVAAMLILSSCLE-N--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAK  150 (339)
Q Consensus        82 ~i~~Lv~lL~~~--------~~~~~~~a~~~L~nLs~~~~-~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~  150 (339)
                      ++|.+++-|..+        ...+|..|+..+|.++.... .  +. +...=.-..|...+-+           ....+|
T Consensus       421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFD-----------revncR  488 (1133)
T KOG1943|consen  421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFD-----------REVNCR  488 (1133)
T ss_pred             HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcC-----------chhhHh
Confidence            567777666433        24589999999999986332 2  22 2111111222233333           578899


Q ss_pred             HHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHH-hh
Q 048113          151 IDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVET-IE  229 (339)
Q Consensus       151 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~l-L~  229 (339)
                      ..|..++.....-..|..     .+++ |+......  +-..+.+|...++..++..+.-+..+.      ..|+.. +.
T Consensus       489 RAAsAAlqE~VGR~~n~p-----~Gi~-Lis~~dy~--sV~~rsNcy~~l~~~ia~~~~y~~~~f------~~L~t~Kv~  554 (1133)
T KOG1943|consen  489 RAASAALQENVGRQGNFP-----HGIS-LISTIDYF--SVTNRSNCYLDLCVSIAEFSGYREPVF------NHLLTKKVC  554 (1133)
T ss_pred             HHHHHHHHHHhccCCCCC-----Cchh-hhhhcchh--hhhhhhhHHHHHhHHHHhhhhHHHHHH------HHHHhcccc
Confidence            999999987654322221     1111 11122211  234455666666633333333332222      233332 45


Q ss_pred             cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH----HHHHHHHHHHhc
Q 048113          230 EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK----NMARDLLLLLRD  291 (339)
Q Consensus       230 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~----~~A~~~L~~l~~  291 (339)
                      +-++.+++.++++|.+|+...     ......+.+|+|+....+.+...+    ..+..++..+..
T Consensus       555 HWd~~irelaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~  615 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRK  615 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhh
Confidence            668999999999999987552     334566788888888777776654    333334444443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.92  E-value=0.31  Score=46.40  Aligned_cols=155  Identities=17%  Similarity=0.135  Sum_probs=115.2

Q ss_pred             hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc--CchHHHHHHHHH
Q 048113          123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK--SSGLTEKAIALL  200 (339)
Q Consensus       123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L  200 (339)
                      ....+..++.+           ++...+..|...|..++.++.....+....++..|.+++.++..  ...+...++.++
T Consensus        84 ~a~~i~e~l~~-----------~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af  152 (713)
T KOG2999|consen   84 YAKRIMEILTE-----------GNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAF  152 (713)
T ss_pred             HHHHHHHHHhC-----------CCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence            45677888888           67777777999999999999999999999999999999988644  456777777777


Q ss_pred             HHhhcCCHhhhHHHHhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113          201 ENIVSSSEDALQEIAATCGAIRALVETIEE--GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA  278 (339)
Q Consensus       201 ~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  278 (339)
                      . .+-.+....-..+. ..+|.....+..-  -...+-..|+..|-++...+.. .+..+.++--+..|+..+..++..+
T Consensus       153 ~-elmehgvvsW~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev~i~~li~hlq~~n~~i  229 (713)
T KOG2999|consen  153 S-ELMEHGVVSWESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAEEVPIETLIRHLQVSNQRI  229 (713)
T ss_pred             H-HHHhhceeeeeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHhcCcHHHHHHHHHhcchHH
Confidence            7 33333222222222 3456666665532  2345667888999888877654 5677778889999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 048113          279 KNMARDLLLLLRD  291 (339)
Q Consensus       279 ~~~A~~~L~~l~~  291 (339)
                      +..|...+..+..
T Consensus       230 ~~~aial~nal~~  242 (713)
T KOG2999|consen  230 QTCAIALLNALFR  242 (713)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888865544

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=1.7  Score=43.10  Aligned_cols=207  Identities=13%  Similarity=0.119  Sum_probs=106.8

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113            7 DNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL   86 (339)
Q Consensus         7 ~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L   86 (339)
                      .-|+++|+.+|-..++.|+.+-..    =.=...+|.+...|.+.++-+|++|.-++..+-+..+.   .  -.++-+.+
T Consensus       106 kDLQHPNEyiRG~TLRFLckLkE~----ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L--~pDapeLi  176 (948)
T KOG1058|consen  106 KDLQHPNEYIRGSTLRFLCKLKEP----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---L--IPDAPELI  176 (948)
T ss_pred             hhccCchHhhcchhhhhhhhcCcH----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---h--cCChHHHH
Confidence            446788888888888887776432    01123456666777777777777777666655552000   0  01222222


Q ss_pred             HHhhcC-CChhHHHHHH----------------------------------HHHHHHhcCccchHHHHhcchHHHHHHHh
Q 048113           87 LEVLQC-QSTTLIELTV----------------------------------AAMLILSSCLENKLEIASSGAIQRLVEIL  131 (339)
Q Consensus        87 v~lL~~-~~~~~~~~a~----------------------------------~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll  131 (339)
                      -..|.. .++..+.+|.                                  ..+...+...+..    +...|+.+..+|
T Consensus       177 ~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~----~~~~i~~i~~lL  252 (948)
T KOG1058|consen  177 ESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE----KARYIRCIYNLL  252 (948)
T ss_pred             HHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH----hhHHHHHHHHHH
Confidence            223322 2333333332                                  2222222111110    133577777788


Q ss_pred             cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh
Q 048113          132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL  211 (339)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~  211 (339)
                      .+           .++.++-.|+.+|.+|+.++...+.-     ...+++++.+-+ +..+....+.-|. -+.   ...
T Consensus       253 ~s-----------tssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kes-dnnvklIvldrl~-~l~---~~~  311 (948)
T KOG1058|consen  253 SS-----------TSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKES-DNNVKLIVLDRLS-ELK---ALH  311 (948)
T ss_pred             hc-----------CCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhcc-CcchhhhhHHHHH-HHh---hhh
Confidence            77           56677777777777776666543332     223444443321 2233333332222 122   222


Q ss_pred             HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113          212 QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       212 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                      +.+.+  |.+..+++.|.+++-+++..++.....|...
T Consensus       312 ~~il~--~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  312 EKILQ--GLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHH--HHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            23332  5667777777777777777777776666543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.85  E-value=0.12  Score=51.16  Aligned_cols=219  Identities=16%  Similarity=0.122  Sum_probs=143.7

Q ss_pred             HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHH-HhccCCcchhhHHhhcCChHHHHHhhcCCCh-hHHHHHHHHHHHH
Q 048113           31 QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLL-SLACGSERNKIRIVKSGIVPVLLEVLQCQST-TLIELTVAAMLIL  108 (339)
Q Consensus        31 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nL  108 (339)
                      -|...++.|+...|+.+.....++.+..+.++|. .++.  +..+    ...+++++...+.+... .-...++.++.||
T Consensus       496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnL  569 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALEALTNL  569 (748)
T ss_pred             hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence            5566778999999999988888888888888887 3333  2222    22455666555554432 2356788999999


Q ss_pred             hcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-HHHHhc-CcHHHHHHHhhc
Q 048113          109 SSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-SPIVSS-GVTYCLLQLIHS  185 (339)
Q Consensus       109 s~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~-g~i~~Lv~ll~~  185 (339)
                      ++.++ .|+.|.+.-+++.+-.++-.           +++..+..++..+.||...+..- ..+++. ...+.....+..
T Consensus       570 as~s~s~r~~i~ke~~~~~ie~~~~e-----------e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~  638 (748)
T KOG4151|consen  570 ASISESDRQKILKEKALGKIEELMTE-----------ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV  638 (748)
T ss_pred             cCcchhhHHHHHHHhcchhhHHHhhc-----------ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence            97554 47778776666666666656           79999999999999998877554 455664 455555555544


Q ss_pred             cccCchHHHHHHHHHHHhhcCCHhhhHH-HHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCCh
Q 048113          186 SEKSSGLTEKAIALLENIVSSSEDALQE-IAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVM  264 (339)
Q Consensus       186 ~~~~~~~~~~a~~~L~n~l~~~~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i  264 (339)
                      -  .+.....+++++. .+....++... +..-......++.++.+.+..+|...+.+..|+.... .+..+.+.+...+
T Consensus       639 ~--~E~~~lA~a~a~a-~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~-~ei~~~~~~~~~~  714 (748)
T KOG4151|consen  639 A--DEKFELAGAGALA-AITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL-FEIAEKIFETEVM  714 (748)
T ss_pred             h--hhHHhhhcccccc-chhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH-HHHHHHhccchHH
Confidence            2  3555556656555 33333333222 3332457788899999999999999999999965432 3344555555555


Q ss_pred             HHHHHh
Q 048113          265 PGLLQL  270 (339)
Q Consensus       265 ~~L~~l  270 (339)
                      +.+...
T Consensus       715 ~~l~~~  720 (748)
T KOG4151|consen  715 ELLSGL  720 (748)
T ss_pred             HHHHHH
Confidence            555544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.79  E-value=0.072  Score=43.03  Aligned_cols=147  Identities=18%  Similarity=0.124  Sum_probs=97.2

Q ss_pred             ChHHHHHhhcC--CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           82 IVPVLLEVLQC--QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        82 ~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      -+..++..|..  .++++|..+.-++..+-  +..+... ..-.-+.+-..+..           .+.+....++.++..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~-----------~~~d~~i~~~~~l~~   69 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDE-----------GEMDSLIIAFSALTA   69 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCC-----------HHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHcc-----------ccchhHHHHHHHHHH
Confidence            34566666654  46789999988887773  2222222 11122233334444           334466677777877


Q ss_pred             hcC-CCCChHHHH-hcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChH-H
Q 048113          160 LST-CHQLISPIV-SSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQ-C  235 (339)
Q Consensus       160 Ls~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~-~  235 (339)
                      |=. .++....+. ..|..+.++.++....++......++.+|. .-+.+...|..+.+  .+++-|-++++. .++. +
T Consensus        70 lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~i  146 (157)
T PF11701_consen   70 LFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFISK--NYVSWLKELYKNSKDDSEI  146 (157)
T ss_dssp             HCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-C
T ss_pred             HhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHHHH--HHHHHHHHHHccccchHHH
Confidence            744 556666665 459999999999833346788889999999 77888888888875  689999999964 4455 7


Q ss_pred             HHHHHHHHHH
Q 048113          236 KEHAVAILLL  245 (339)
Q Consensus       236 ~~~a~~~L~~  245 (339)
                      +..|+.+|+.
T Consensus       147 r~~A~v~L~K  156 (157)
T PF11701_consen  147 RVLAAVGLCK  156 (157)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.75  E-value=0.078  Score=38.97  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--cCChHHHHHhhc
Q 048113           17 QIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--SGIVPVLLEVLQ   91 (339)
Q Consensus        17 ~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--~g~i~~Lv~lL~   91 (339)
                      |.-++.+|...+.. ... +.+  ..++++++..+.++++.+|..|+.+|.++++.   .+..+..  ..+.+.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence            45567777777766 222 222  56899999999999999999999999999983   2334433  367788888888


Q ss_pred             CCChhHHHHHHHHHHHH
Q 048113           92 CQSTTLIELTVAAMLIL  108 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nL  108 (339)
                      .+++.++..| ..|-+|
T Consensus        79 D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CCchhHHHHH-HHHHHH
Confidence            8888877766 555444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.19  Score=49.56  Aligned_cols=208  Identities=14%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE  117 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~  117 (339)
                      .+++..++.=..+.++.+|..|++.++.+..+  ....     -...++.+++.+.++.++..++....++=..  ....
T Consensus        85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~  155 (734)
T KOG1061|consen   85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDL  155 (734)
T ss_pred             HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhh
Confidence            34455555555566888888888887766662  1111     2356788899999999999887777766543  3466


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                      +.+.|.++.|.+++.+           .++.+..+|+.+|..+...+.+ -..-...-.+..++..+....  +=-+...
T Consensus       156 ~~~~gl~~~L~~ll~D-----------~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~--EW~qi~I  222 (734)
T KOG1061|consen  156 VEDSGLVDALKDLLSD-----------SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT--EWGQIFI  222 (734)
T ss_pred             ccccchhHHHHHHhcC-----------CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh--hhhHHHH
Confidence            7789999999999997           7999999999999998664332 111111112333333333321  1112233


Q ss_pred             HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113          197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT  275 (339)
Q Consensus       197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~  275 (339)
                      +..+.+....++....      ..+..+...|++.++.+.-.+..++..+......  .....-...-|+|+.++...+
T Consensus       223 L~~l~~y~p~d~~ea~------~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~--~~~~~~~K~~~pl~tlls~~~  293 (734)
T KOG1061|consen  223 LDCLAEYVPKDSREAE------DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ--VNELLFKKVAPPLVTLLSSES  293 (734)
T ss_pred             HHHHHhcCCCCchhHH------HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH--HHHHHHHHhcccceeeecccc
Confidence            3344422222221111      2344455555665655555566666555543211  122233345555555554444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=95.65  E-value=0.1  Score=44.56  Aligned_cols=134  Identities=19%  Similarity=0.203  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHhcCc---cchHHHHhcchHHHHHHHhcCCCCCCC--Ccc-C-CCCHHHHHHHHHHHHhhcCCCCChH
Q 048113           96 TLIELTVAAMLILSSCL---ENKLEIASSGAIQRLVEILNGDLADDD--NSY-G-RISVQAKIDAIATLHNLSTCHQLIS  168 (339)
Q Consensus        96 ~~~~~a~~~L~nLs~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~--~~~-~-~~~~~~~~~a~~~L~nLs~~~~~~~  168 (339)
                      .+|++|..+|.|++-.=   ..-+.| ....+.-|+...-+++++..  +.. + .....-+..|+.+|+.||..+.|.+
T Consensus        81 ~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD  159 (257)
T PF12031_consen   81 QLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD  159 (257)
T ss_pred             HHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence            46888888888887321   112222 23345666666666543332  221 1 1234567889999999999999998


Q ss_pred             HHHhcCcHH-------HHHHHhhccccCchHHHHHHHHHHHhhcCCHh-hhHHHHhhCCcHHHHHHHhhcCC
Q 048113          169 PIVSSGVTY-------CLLQLIHSSEKSSGLTEKAIALLENIVSSSED-ALQEIAATCGAIRALVETIEEGS  232 (339)
Q Consensus       169 ~i~~~g~i~-------~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~  232 (339)
                      -+...+-+.       .|++++... .+.-.++-|+..|. +++..++ ....+..+.++|..|+.++++..
T Consensus       160 liLaTpp~sRlE~l~~~L~r~l~~~-e~~v~REfAvvlL~-~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~  229 (257)
T PF12031_consen  160 LILATPPFSRLERLFHTLVRLLGMR-EDQVCREFAVVLLS-NLAQGDEAAARAIAMQKPCISHLIAFIEDAE  229 (257)
T ss_pred             eeeeCCCHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHH-HHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence            888876433       444555444 35677889999999 5655444 34355545799999999998743

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=95.60  E-value=1.6  Score=45.66  Aligned_cols=255  Identities=13%  Similarity=0.116  Sum_probs=142.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc---CCcchhhHHhhcCChHHHHHh
Q 048113           13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC---GSERNKIRIVKSGIVPVLLEV   89 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~---~~~~~~~~i~~~g~i~~Lv~l   89 (339)
                      ..+.+.+|++.|..++...-+...=..++|.++.++.++..++|..|+.+|..+-.   .-+..-..+.-.-..|.|-.+
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l  515 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL  515 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence            45678899999999987632333335689999999999999999999988876544   233344445555567777777


Q ss_pred             hcCCChh-HHHHHHHHHHHHhc------------------CccchHHHH----h------cchHHHHHH-HhcCCCCCCC
Q 048113           90 LQCQSTT-LIELTVAAMLILSS------------------CLENKLEIA----S------SGAIQRLVE-ILNGDLADDD  139 (339)
Q Consensus        90 L~~~~~~-~~~~a~~~L~nLs~------------------~~~~~~~i~----~------~g~i~~Lv~-ll~~~~~~~~  139 (339)
                      +.+.+.. ++..=+..|..|+.                  ++++-+-..    +      ...++..+. ++..      
T Consensus       516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd------  589 (1431)
T KOG1240|consen  516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD------  589 (1431)
T ss_pred             hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC------
Confidence            7764332 33333333333321                  111100000    0      012222222 3322      


Q ss_pred             CccCCCCHHHHHHHHHHHHhhcC-CCCCh-HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh
Q 048113          140 NSYGRISVQAKIDAIATLHNLST-CHQLI-SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT  217 (339)
Q Consensus       140 ~~~~~~~~~~~~~a~~~L~nLs~-~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~  217 (339)
                           ..+-++..-+..|.-||. ....+ ..    =.++.|..+|.+.  +..++-.=...+. -++..- +. +-++ 
T Consensus       590 -----~~~~Vkr~Lle~i~~LC~FFGk~ksND----~iLshLiTfLNDk--Dw~LR~aFfdsI~-gvsi~V-G~-rs~s-  654 (1431)
T KOG1240|consen  590 -----SPPIVKRALLESIIPLCVFFGKEKSND----VILSHLITFLNDK--DWRLRGAFFDSIV-GVSIFV-GW-RSVS-  654 (1431)
T ss_pred             -----CchHHHHHHHHHHHHHHHHhhhccccc----chHHHHHHHhcCc--cHHHHHHHHhhcc-ceEEEE-ee-eeHH-
Confidence                 334455555555555543 11100 00    1355666666653  2232222222222 111110 11 1123 


Q ss_pred             CCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          218 CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       218 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ...+|-|.+-|.++++-+...|++++.-|+... . .++.. -...++....++-+++.-+|..++.++...+.
T Consensus       655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-l-l~K~~-v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-L-LRKPA-VKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-c-cchHH-HHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            467888888999999999999999999998753 2 22221 12245555566778899999999998876654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=2.9  Score=41.87  Aligned_cols=282  Identities=11%  Similarity=0.103  Sum_probs=166.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHH-HHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            4 MLMDNLLNGERETQIQAANELGKL-SRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      -|..+|+|.....+..|.+-|-.+ +++ +     -....|.+++-..+.+.+++.-..--|...+...++ -..+    
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd-LALL----  108 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD-LALL----  108 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-ceee----
Confidence            477888888888877777665544 333 2     233457778878888888888776666666663222 1111    


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      -|..+-+-|..+++.+|.-|+++|..+      |..++..=.+-.+-+....           .++-+|..|+.++-.|=
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D-----------~s~yVRk~AA~AIpKLY  171 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTD-----------PSPYVRKTAAHAIPKLY  171 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcC-----------CcHHHHHHHHHhhHHHh
Confidence            245666778888888998887777542      2222222223333344444           68899999999999984


Q ss_pred             C-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          162 T-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       162 ~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      . +++.+..+.     +.+-.+|.+.  ++.+.-.|+.+.. .+  +|+.- .+.  .+-...|.++|.+-++.-|-..+
T Consensus       172 sLd~e~k~qL~-----e~I~~LLaD~--splVvgsAv~AF~-ev--CPerl-dLI--HknyrklC~ll~dvdeWgQvvlI  238 (968)
T KOG1060|consen  172 SLDPEQKDQLE-----EVIKKLLADR--SPLVVGSAVMAFE-EV--CPERL-DLI--HKNYRKLCRLLPDVDEWGQVVLI  238 (968)
T ss_pred             cCChhhHHHHH-----HHHHHHhcCC--CCcchhHHHHHHH-Hh--chhHH-HHh--hHHHHHHHhhccchhhhhHHHHH
Confidence            4 666666553     3455566664  4666777777777 33  33333 333  35678888888776666666666


Q ss_pred             HHHHHhhccCc--hhHHHHHHh-cC------------------------ChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          241 AILLLICKSCR--DKYRSSILK-EG------------------------VMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       241 ~~L~~l~~~~~--~~~~~~~~~-~g------------------------~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ..|..-|...-  +..-....+ .|                        .+...-.++.+.++.+...++.+.+.++...
T Consensus       239 ~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~  318 (968)
T KOG1060|consen  239 NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN  318 (968)
T ss_pred             HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence            66655443110  000000000 00                        1223334567788888888888988887654


Q ss_pred             CCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          294 SFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       294 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      +        .....+.+++.+ -.....++...+-.+.+..
T Consensus       319 ~--------~~~i~kaLvrLL-rs~~~vqyvvL~nIa~~s~  350 (968)
T KOG1060|consen  319 Q--------VTKIAKALVRLL-RSNREVQYVVLQNIATISI  350 (968)
T ss_pred             H--------HHHHHHHHHHHH-hcCCcchhhhHHHHHHHHh
Confidence            2        133466666654 3444555555555554443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=0.83  Score=48.61  Aligned_cols=282  Identities=15%  Similarity=0.177  Sum_probs=147.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHH---HHHHHHhccC--Ccch--h
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAA---LLSLLSLACG--SERN--K   74 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A---~~~L~~Ls~~--~~~~--~   74 (339)
                      |+.-|.+..|.+|+.++-+|..+..+ -.+.+.+  ...+..+....++=.+.+|+.|   +.+|..++..  +..+  +
T Consensus      1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            44445688999999999999999986 2222222  2455555555444344555554   5555555432  1111  1


Q ss_pred             hHHhhcCChHHHHH--hhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113           75 IRIVKSGIVPVLLE--VLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAK  150 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~--lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~  150 (339)
                      ..=+-..++|.|+.  ++ +.-++++..+..++..|+.....  ++.+  ...||.|+.....           -.+.+.
T Consensus      1124 ~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~-----------lE~~vL 1189 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSE-----------LEPQVL 1189 (1702)
T ss_pred             HHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccc-----------cchHHH
Confidence            11111123444443  22 45688999999999999865443  3322  3356666666544           222222


Q ss_pred             -----------HHHHHHHHh-hcCCCCChHHH------Hh----cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-
Q 048113          151 -----------IDAIATLHN-LSTCHQLISPI------VS----SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-  207 (339)
Q Consensus       151 -----------~~a~~~L~n-Ls~~~~~~~~i------~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-  207 (339)
                                 .+|+..++. .+++...-+.|      ++    ...+|.+.++++++. .-..+..|...+. .++.. 
T Consensus      1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~-~L~~r~ 1267 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-GLGTKVGCASFIS-LLVQRL 1267 (1702)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-CCCcchhHHHHHH-HHHHHh
Confidence                       223333332 22222211111      11    135677777777653 2334555555555 44321 


Q ss_pred             HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 048113          208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLL  287 (339)
Q Consensus       208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~  287 (339)
                      +..-....  ...+..+.-.+++.++.++...+.++..++..+.+...+.+     +..+........+..+..++.++.
T Consensus      1268 ~~emtP~s--gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL-----ie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1268 GSEMTPYS--GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL-----IETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred             ccccCcch--hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHHHhccCCCccchhHHHHH
Confidence            11111111  23566777777888899998888888888776655333333     444444433333333366666666


Q ss_pred             HHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          288 LLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      ++++...      .+-++....++..+-
T Consensus      1341 ~Ian~s~------e~Lkn~asaILPLiF 1362 (1702)
T KOG0915|consen 1341 NIANYSQ------EMLKNYASAILPLIF 1362 (1702)
T ss_pred             HHHHhhH------HHHHhhHHHHHHHHH
Confidence            6665432      244444455555544

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.57  E-value=0.077  Score=36.61  Aligned_cols=67  Identities=13%  Similarity=0.191  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113          150 KIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCG  219 (339)
Q Consensus       150 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g  219 (339)
                      .+.|++++.+++..+.+...+-+.++++.++++....+ .-.++--|..+|+ .++.+.++.+.+.+ .|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lg-lis~T~~G~~~L~~-~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLG-LISSTEEGAEILDE-LG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHH-HHhCCHHHHHHHHH-cC
Confidence            56799999999998888888888899999999998764 5788999999999 99999999988765 44

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=1.5  Score=45.20  Aligned_cols=242  Identities=14%  Similarity=0.094  Sum_probs=141.1

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCccchHH
Q 048113           39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLENKLE  117 (339)
Q Consensus        39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~  117 (339)
                      +++..|...|++.+..+++.|++.++.++...|.   .+ .-.++...+.++...+ +..-..++-+|..|+...--...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            5677777888888999999999999999996551   11 2235666666554433 44556788888888853211110


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCcc--CCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSY--GRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT  193 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~--~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  193 (339)
                      . =...+|.+++-+.-+     +.+  .+....+|..|+.+.|.++.  .+..-+.+++.=+-..|...+.+.  .-..+
T Consensus       417 ~-l~dVvplI~kaL~Yd-----~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr--evncR  488 (1133)
T KOG1943|consen  417 L-LEDVVPLILKALHYD-----VRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR--EVNCR  488 (1133)
T ss_pred             H-HHHHHHHHHHHhhhh-----hhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc--hhhHh
Confidence            0 023466666655431     111  12356789999999999976  333333343332222333444443  46788


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc---CChHHHHHHHHHHHH-hhccCchhHHHHHHhcCChHHHHH
Q 048113          194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE---GSPQCKEHAVAILLL-ICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      +.|.+++..++=..           |-+|.=+.++.+   -+...+.++-..++. ++..  +.+++.+     +..|+.
T Consensus       489 RAAsAAlqE~VGR~-----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~--~~y~~~~-----f~~L~t  550 (1133)
T KOG1943|consen  489 RAASAALQENVGRQ-----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEF--SGYREPV-----FNHLLT  550 (1133)
T ss_pred             HHHHHHHHHHhccC-----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhh--hhHHHHH-----HHHHHh
Confidence            89999998433211           222211222222   123334444433322 2323  2244443     445554


Q ss_pred             h-hhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          270 L-SVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       270 l-l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      . +.+.+..+++.|++.|..|+...     .+.+.+..+++++....
T Consensus       551 ~Kv~HWd~~irelaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~l  592 (1133)
T KOG1943|consen  551 KKVCHWDVKIRELAAYALHKLSLTE-----PKYLADYVLPPLLDSTL  592 (1133)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhh-----HHhhcccchhhhhhhhc
Confidence            4 77889999999999999987753     34566777777766654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=95.43  E-value=2  Score=43.43  Aligned_cols=268  Identities=13%  Similarity=0.121  Sum_probs=120.9

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccC-CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACG-SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA  119 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  119 (339)
                      +++...++++...+.+...+.-...++.. +...+..+.....+|.+-.+..+.+..++...+....+++---+ +..- 
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-  434 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-  434 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence            34444444444444444444444444431 22233444444455666555555555666655555554442111 0000 


Q ss_pred             hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113          120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA  198 (339)
Q Consensus       120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~  198 (339)
                      -....|.++..++.           ..+.++.+....+..+-. .+......+..-.++.++.+-.+.  .-.++...+.
T Consensus       435 i~~llp~~~~~l~d-----------e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~--~wRvr~ail~  501 (759)
T KOG0211|consen  435 ISELLPLLIGNLKD-----------EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL--LWRVRLAILE  501 (759)
T ss_pred             ccccChhhhhhcch-----------hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch--hHHHHHHHHH
Confidence            01234555556666           677788777766655533 333344445555566666555442  2344444444


Q ss_pred             HHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113          199 LLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA  278 (339)
Q Consensus       199 ~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  278 (339)
                      .+. .++....  ..+.+ .-.-+-+..-+.+..-.+++.|+..+..++...+.    .-.....+|.+..+..+++-..
T Consensus       502 ~ip-~la~q~~--~~~~~-~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~----~w~~~~~i~k~L~~~~q~~y~~  573 (759)
T KOG0211|consen  502 YIP-QLALQLG--VEFFD-EKLAELLRTWLPDHVYSIREAAARNLPALVETFGS----EWARLEEIPKLLAMDLQDNYLV  573 (759)
T ss_pred             HHH-HHHHhhh--hHHhh-HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc----chhHHHhhHHHHHHhcCcccch
Confidence            444 2222211  11111 11111111122222335566666666555543221    1111224555555555544555


Q ss_pred             HHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-cccchHHHHHHHHHHHHh
Q 048113          279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-DTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       279 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~l~~~v~~~  336 (339)
                      |..-+..+..|+.--     ++.+....+..++..+..|. ..+|=++.+.|..++..|
T Consensus       574 R~t~l~si~~la~v~-----g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L  627 (759)
T KOG0211|consen  574 RMTTLFSIHELAEVL-----GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL  627 (759)
T ss_pred             hhHHHHHHHHHHHHh-----ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence            555555555554421     22234444444444444444 355556666666666554

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.43  E-value=0.66  Score=41.69  Aligned_cols=172  Identities=16%  Similarity=0.124  Sum_probs=110.9

Q ss_pred             CChHHHH-HHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--ch
Q 048113           39 GIIAPLI-SMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--NK  115 (339)
Q Consensus        39 g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~  115 (339)
                      +.+..|+ .-+++.++.+|+.|+++|+-+|--+.+...     ..++.+...++.++++++..|+.++..+....+  .-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4555555 567888999999999999999985442221     236778888877789999999999998874221  11


Q ss_pred             H-------HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcccc
Q 048113          116 L-------EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEK  188 (339)
Q Consensus       116 ~-------~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~  188 (339)
                      .       .......+..+.+.+.+           .+++++..|+..++.|-.......   ...++..|+-+..++..
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~-----------~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t  166 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDS-----------ENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST  166 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc
Confidence            1       12234567778888888           788999999999999865443222   12344455544444321


Q ss_pred             -CchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113          189 -SSGLTEKAIALLENIVS-SSEDALQEIAATCGAIRALVETIEEG  231 (339)
Q Consensus       189 -~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~i~~Lv~lL~~~  231 (339)
                       +..-.++++...--..+ .++.++..+.  ..+++.+-.+.+..
T Consensus       167 ~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~--~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  167 EDNQRLRQCLSVFFPVYASSSPENQERLA--EAFLPTLRTLSNAP  209 (298)
T ss_pred             CCcHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhCc
Confidence             22345566654443444 4455555554  47788877777653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=95.37  E-value=1.7  Score=37.80  Aligned_cols=222  Identities=15%  Similarity=0.136  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHHHHHHH-----------------------HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhc
Q 048113           13 ERETQIQAANELGKLSRR-----------------------QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLA   67 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~-----------------------~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls   67 (339)
                      ....|.+|+..|+++...                       +-.++.....++.|+..|.+.  .|.+|..|..+|+.+.
T Consensus        18 ~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~   97 (289)
T KOG0567|consen   18 PLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG   97 (289)
T ss_pred             HHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc
Confidence            345567777777776532                       112223455677777766543  5677888888887776


Q ss_pred             cCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc---c--ch-HHH-------HhcchHHHHHHHhcCC
Q 048113           68 CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL---E--NK-LEI-------ASSGAIQRLVEILNGD  134 (339)
Q Consensus        68 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~--~~-~~i-------~~~g~i~~Lv~ll~~~  134 (339)
                      .           .+..+.+-+..+.+...+++-+..++..+---+   .  +. ..+       ...+-++.|-..+...
T Consensus        98 ~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~  166 (289)
T KOG0567|consen   98 D-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDE  166 (289)
T ss_pred             c-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhc
Confidence            3           224455666665555566665555555542100   0  00 000       1122355555444332


Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHH
Q 048113          135 LADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEI  214 (339)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i  214 (339)
                      +         ...--+..|+-.|.|+-..          ..|..|++-+...  +.-.+..+..+++           ++
T Consensus       167 t---------~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~--SalfrhEvAfVfG-----------Ql  214 (289)
T KOG0567|consen  167 T---------KPLFERYRAMFYLRNIGTE----------EAINALIDGLADD--SALFRHEVAFVFG-----------QL  214 (289)
T ss_pred             c---------hhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccc--hHHHHHHHHHHHh-----------hc
Confidence            1         2222334455555554211          1344455555442  3445556666776           33


Q ss_pred             HhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113          215 AATCGAIRALVETIEE--GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       215 ~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      .. .-.|+.|.+.|.+  ..+-++-.|+.+|..++..  .          .++.|.+.+.+..+-+++.+..+|.++-
T Consensus       215 ~s-~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~----------~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  215 QS-PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D----------CVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             cc-hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            33 4678999998875  3578889999999998743  2          4678888899888889988888887764

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.32  E-value=0.076  Score=44.06  Aligned_cols=80  Identities=11%  Similarity=0.280  Sum_probs=65.0

Q ss_pred             hHHHHhcCcHHHHHHHhhccc-------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113          167 ISPIVSSGVTYCLLQLIHSSE-------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA  239 (339)
Q Consensus       167 ~~~i~~~g~i~~Lv~ll~~~~-------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a  239 (339)
                      ...+++.||+..|+++|....       .+......++.++. .+..+..+...+..+.+++..++..|.+++..++..+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk-al~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~  178 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK-ALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA  178 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH-HHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH-HHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence            567788899999999986521       12366778889999 7888889999999888999999999999999999999


Q ss_pred             HHHHHHhh
Q 048113          240 VAILLLIC  247 (339)
Q Consensus       240 ~~~L~~l~  247 (339)
                      +.+|..+|
T Consensus       179 leiL~~lc  186 (187)
T PF06371_consen  179 LEILAALC  186 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.31  E-value=1.6  Score=40.39  Aligned_cols=247  Identities=19%  Similarity=0.164  Sum_probs=131.4

Q ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-CCH-HHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLN-GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-QDY-EAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s-~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-~~~-~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +++++-|.+ .+...|..++-.|..-+.+  .|..|.++|.+..+.+.+.+ ++. .....++.++.-++. +..+-..+
T Consensus        24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~~~~~l~  102 (361)
T PF07814_consen   24 EYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DGLNMHLL  102 (361)
T ss_pred             HHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CCcchhhh
Confidence            466666763 3456787877777776655  99999999999999998844 333 444445555556665 34444444


Q ss_pred             hhcCChHHHHHhhc--CC-----C-------------------------------------hhHHHHHHHHHHHHh----
Q 048113           78 VKSGIVPVLLEVLQ--CQ-----S-------------------------------------TTLIELTVAAMLILS----  109 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~--~~-----~-------------------------------------~~~~~~a~~~L~nLs----  109 (339)
                      .+.+....+++++.  ..     +                                     ...+..|..++-.++    
T Consensus       103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~  182 (361)
T PF07814_consen  103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR  182 (361)
T ss_pred             hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence            44455555555554  00     0                                     011222223332221    


Q ss_pred             --------c---CccchHHHHhcchHHHHHHHhcC----CCCCCCC-ccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHh
Q 048113          110 --------S---CLENKLEIASSGAIQRLVEILNG----DLADDDN-SYGRISVQAKIDAIATLHNLST-CHQLISPIVS  172 (339)
Q Consensus       110 --------~---~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~-~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~  172 (339)
                              .   .+.-|+.+.+.|++..+++++.+    ......+ .....+......++++|-|.+. ++++...+..
T Consensus       183 ~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~  262 (361)
T PF07814_consen  183 EAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLS  262 (361)
T ss_pred             hcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence                    0   01124556667889999998863    1100000 0111223345568888888876 5677776655


Q ss_pred             c--CcHHHH-HHHhhccc-cCchHHHHHHHHHHHhhcCCH-hhhHHHHh-----hCCcHHHHHHHhhc--------CChH
Q 048113          173 S--GVTYCL-LQLIHSSE-KSSGLTEKAIALLENIVSSSE-DALQEIAA-----TCGAIRALVETIEE--------GSPQ  234 (339)
Q Consensus       173 ~--g~i~~L-v~ll~~~~-~~~~~~~~a~~~L~n~l~~~~-~~~~~i~~-----~~g~i~~Lv~lL~~--------~~~~  234 (339)
                      .  +..+.+ ..++.... ...++...++.++- |++.++ +....+..     ..|.+..-...+..        ..-+
T Consensus       263 ~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlll-NlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D  341 (361)
T PF07814_consen  263 HRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLL-NLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFD  341 (361)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHHee-eCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccch
Confidence            4  333333 33333321 12344667888888 676654 33333332     12222221111111        1124


Q ss_pred             HHHHHHHHHHHhhccCc
Q 048113          235 CKEHAVAILLLICKSCR  251 (339)
Q Consensus       235 ~~~~a~~~L~~l~~~~~  251 (339)
                      ..-.++++|.||+..++
T Consensus       342 ~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  342 ILILALGLLINLVEHSE  358 (361)
T ss_pred             HHHHHHHhHHHheeeCc
Confidence            55678889999987753

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=3.9  Score=43.93  Aligned_cols=234  Identities=10%  Similarity=0.101  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh--hcCChHHHHHhhcCCC
Q 048113           18 IQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV--KSGIVPVLLEVLQCQS   94 (339)
Q Consensus        18 ~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~--~~g~i~~Lv~lL~~~~   94 (339)
                      ..+-+-|++|+.+    +.+.+.|-.++++-++. ...-+.-|+.-++.++.. .  ++.+.  -...||.|.+.=.+++
T Consensus       939 isTYKELc~LASd----l~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~-a--~~kl~p~l~kLIPrLyRY~yDP~ 1011 (1702)
T KOG0915|consen  939 ISTYKELCNLASD----LGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQ-A--GEKLEPYLKKLIPRLYRYQYDPD 1011 (1702)
T ss_pred             chHHHHHHHHHhh----cCChHHHHHHHHHhhhhchhhcccchhhchHHHHHH-H--HHhhhhHHHHhhHHHhhhccCCc
Confidence            3445556666654    11233444555555543 334566677777777773 2  22222  1245777777766666


Q ss_pred             hhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc
Q 048113           95 TTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS  173 (339)
Q Consensus        95 ~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~  173 (339)
                      +.++. |+.-+||-...+. .-..-.-.....-|+.-+.+           ....+|+.+|.+|..|-..+++-+..-..
T Consensus      1012 ~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~-----------kewRVReasclAL~dLl~g~~~~~~~e~l 1079 (1702)
T KOG0915|consen 1012 KKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTS-----------KEWRVREASCLALADLLQGRPFDQVKEKL 1079 (1702)
T ss_pred             HHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            66654 5577777665443 21111123456666666666           78999999999999998765443222111


Q ss_pred             -CcHHHHHHHhhccccCchHHHH---HHHHHHHhhcC-----CHhhhHHHHhhCCcHHHHHH--HhhcCChHHHHHHHHH
Q 048113          174 -GVTYCLLQLIHSSEKSSGLTEK---AIALLENIVSS-----SEDALQEIAATCGAIRALVE--TIEEGSPQCKEHAVAI  242 (339)
Q Consensus       174 -g~i~~Lv~ll~~~~~~~~~~~~---a~~~L~n~l~~-----~~~~~~~i~~~~g~i~~Lv~--lL~~~~~~~~~~a~~~  242 (339)
                       ..+..+++.+++-  .+.+++.   ++.+|+-++..     ++..-+++.  +.++|-|++  .+ +.-++++..++..
T Consensus      1080 pelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1080 PELWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SKVNEVRRFSIGT 1154 (1702)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cchHHHHHHHHHH
Confidence             4566677777663  2444443   33444422211     111112222  235565554  33 5568899999999


Q ss_pred             HHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113          243 LLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR  277 (339)
Q Consensus       243 L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  277 (339)
                      +..++..++...+..  -...+|.|......-.+.
T Consensus      1155 l~dl~Kssg~~lkP~--~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPH--FPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred             HHHHHHhchhhhcch--hhHHHHHHHHHccccchH
Confidence            999998765432222  234677777766554444

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=95.19  E-value=2.9  Score=42.35  Aligned_cols=264  Identities=12%  Similarity=0.098  Sum_probs=157.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      ++....++...++.+..++.-...++..    .+..+....++|.+-.+..+.+..++...+.....++--.+..  . .
T Consensus       358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~-t  434 (759)
T KOG0211|consen  358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--R-T  434 (759)
T ss_pred             hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--c-C
Confidence            3445555666667777777777777765    3445555666777777777777777777766666555422200  0 0


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      -.-..|.++..++...+.++.+..+.+..+-...+ ..........+|.++.+-..           ....++......+
T Consensus       435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d-----------~~wRvr~ail~~i  503 (759)
T KOG0211|consen  435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED-----------LLWRVRLAILEYI  503 (759)
T ss_pred             ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc-----------hhHHHHHHHHHHH
Confidence            11235666667777778888888777755543322 23444456667777777655           5677888888888


Q ss_pred             HhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      ..++....  ..+.+.-.-+.+...+.+.  -..++++|...+. .++.........   ...++.++....+++=..+.
T Consensus       504 p~la~q~~--~~~~~~~~~~l~~~~l~d~--v~~Ir~~aa~~l~-~l~~~~G~~w~~---~~~i~k~L~~~~q~~y~~R~  575 (759)
T KOG0211|consen  504 PQLALQLG--VEFFDEKLAELLRTWLPDH--VYSIREAAARNLP-ALVETFGSEWAR---LEEIPKLLAMDLQDNYLVRM  575 (759)
T ss_pred             HHHHHhhh--hHHhhHHHHHHHHhhhhhh--HHHHHHHHHHHhH-HHHHHhCcchhH---HHhhHHHHHHhcCcccchhh
Confidence            87766433  2222211222222223322  2467777777776 343322211111   12456666655555555566


Q ss_pred             HHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          238 HAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       238 ~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      ..+.++..++.-.+    +.+..+..+|.+..+..+..+.+|.+++..|.-+...
T Consensus       576 t~l~si~~la~v~g----~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  576 TTLFSIHELAEVLG----QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             HHHHHHHHHHHHhc----cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence            66666666653322    3455567899999999999999999999988777654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=4.3  Score=40.61  Aligned_cols=65  Identities=18%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113           47 MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL  116 (339)
Q Consensus        47 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~  116 (339)
                      .|++.+..+...|++++..|..-++.--..     ++..|-.+++++...+|-.|.++|..++...+.+.
T Consensus       253 ~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v  317 (865)
T KOG1078|consen  253 CLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV  317 (865)
T ss_pred             HHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence            344567788889999999988743322111     77788888888888999999999999997655443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.00  E-value=0.085  Score=36.41  Aligned_cols=67  Identities=12%  Similarity=0.075  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC
Q 048113           98 IELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG  174 (339)
Q Consensus        98 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g  174 (339)
                      .+.+++++.++.+.+..-+.+.+.+.++.++++..+.          +...+|--+..+|.-++...+..+.+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s----------~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS----------PVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC----------CccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            5678999999999888888888889999999999875          688899999999999999999888877765

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.92  E-value=0.043  Score=30.91  Aligned_cols=28  Identities=25%  Similarity=0.204  Sum_probs=19.0

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLAC   68 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~   68 (339)
                      +|.++++++++++++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            5666777777777777777777776654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.90  E-value=5.2  Score=40.90  Aligned_cols=220  Identities=19%  Similarity=0.168  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhc----cCC----HHHHHHHHHHHHHhccCCcchhhHH-----
Q 048113           13 ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLC----SQD----YEAIEAALLSLLSLACGSERNKIRI-----   77 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~A~~~L~~Ls~~~~~~~~~i-----   77 (339)
                      +.+.-...++.|..+++-  +|+.+.+.|+++.|+..|.    .+.    +++.+.-+.++..+...  .+...+     
T Consensus       135 ~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~e--a~~~~~~~~~~  212 (802)
T PF13764_consen  135 GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSE--ANSSSSSESKS  212 (802)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHH--Hhhhhhhhccc
Confidence            334444455555555554  9999999999999998764    333    56777777777666652  111111     


Q ss_pred             -hhcC--------ChHHHHHhhcCC----ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCcc-C
Q 048113           78 -VKSG--------IVPVLLEVLQCQ----STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSY-G  143 (339)
Q Consensus        78 -~~~g--------~i~~Lv~lL~~~----~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~-~  143 (339)
                       ....        -+..|+..+.++    ++.+....+++|-+|+..++.+..        .|++.++....++.++. .
T Consensus       213 ~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~--------~Lv~~F~p~l~f~~~D~~~  284 (802)
T PF13764_consen  213 SSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD--------ALVEHFKPYLDFDKFDEEH  284 (802)
T ss_pred             cccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH--------HHHHHHHHhcChhhccccc
Confidence             1122        267777777664    477888888999999987765443        33333333222222221 1


Q ss_pred             CCCHHHHHHHHHHHHhhcC----CC---CChHHHHhcCcHHHHHHHhhcccc------Cc--------hHHHHHHHHHHH
Q 048113          144 RISVQAKIDAIATLHNLST----CH---QLISPIVSSGVTYCLLQLIHSSEK------SS--------GLTEKAIALLEN  202 (339)
Q Consensus       144 ~~~~~~~~~a~~~L~nLs~----~~---~~~~~i~~~g~i~~Lv~ll~~~~~------~~--------~~~~~a~~~L~n  202 (339)
                      +.+..+   .+..++.++.    +.   ..|..+++.|+++..++.|....+      ++        +-...++..|. 
T Consensus       285 ~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~-  360 (802)
T PF13764_consen  285 SPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLR-  360 (802)
T ss_pred             CchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHH-
Confidence            122222   2444444432    22   236788999999999998866422      11        22345777777 


Q ss_pred             hhcCCHhhhHHHHhhCCcHHHHHHHhhc-C-ChHHHHHHHHHHHHhhc
Q 048113          203 IVSSSEDALQEIAATCGAIRALVETIEE-G-SPQCKEHAVAILLLICK  248 (339)
Q Consensus       203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~-~~~~~~~a~~~L~~l~~  248 (339)
                      -++......+.+.. .+++ +++..|.. . +..+=..|-.+|-.++.
T Consensus       361 GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  361 GLARGHEPTQLLIA-EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHhcCHHHHHHHH-hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            45554443334444 4677 44555543 2 34444444455555554

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=1.3  Score=41.86  Aligned_cols=150  Identities=10%  Similarity=0.009  Sum_probs=90.0

Q ss_pred             hcCChHHHHHHhc----cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcC
Q 048113           37 ERGIIAPLISMLC----SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSC  111 (339)
Q Consensus        37 ~~g~i~~Lv~lL~----~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~  111 (339)
                      +.|....++..+.    +++...+..|++.|.+.+.+.|+....... -.+..++.-|.+ .+.++...++.+|..+...
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            5677666665443    446688999999999999964544333322 244555555544 4677888888888777643


Q ss_pred             ccchHHH-HhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC--CChHHHHhc--CcHHHHHHHhhcc
Q 048113          112 LENKLEI-ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH--QLISPIVSS--GVTYCLLQLIHSS  186 (339)
Q Consensus       112 ~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~--g~i~~Lv~ll~~~  186 (339)
                      -.+...- .=..+.-.+..++.+           .+++++.+|...+..|+...  ..+..+.+.  +...+++-.+++.
T Consensus       331 ~~~~~l~~~~l~ialrlR~l~~s-----------e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~  399 (533)
T KOG2032|consen  331 ASNDDLESYLLNIALRLRTLFDS-----------EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP  399 (533)
T ss_pred             hhhcchhhhchhHHHHHHHHHHh-----------cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC
Confidence            3222210 012234466677777           89999999999999998732  334444432  3344455555553


Q ss_pred             ccCchHHHHHHHHHH
Q 048113          187 EKSSGLTEKAIALLE  201 (339)
Q Consensus       187 ~~~~~~~~~a~~~L~  201 (339)
                        .+.+ ..|++...
T Consensus       400 --~p~v-a~ACr~~~  411 (533)
T KOG2032|consen  400 --NPYV-ARACRSEL  411 (533)
T ss_pred             --ChHH-HHHHHHHH
Confidence              2333 34444444

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.84  E-value=0.03  Score=45.25  Aligned_cols=105  Identities=19%  Similarity=0.246  Sum_probs=74.6

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCCcchhh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLC--SQDYEAIEAALLSLLSLACGSERNKI   75 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~Ls~~~~~~~~   75 (339)
                      ++++-.++..++.+....++.++..+--.    ....+...|.++.+..+..  +++...+..++.+|..=|.  .+.+.
T Consensus        45 ~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r  122 (157)
T PF11701_consen   45 SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCR  122 (157)
T ss_dssp             HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHH
T ss_pred             HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHH
Confidence            34555666555555677777777666543    6667778999999999998  7788888888888877777  45555


Q ss_pred             HHhhcCChHHHHHhhcC-CChh-HHHHHHHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQC-QSTT-LIELTVAAMLIL  108 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~-~~~~-~~~~a~~~L~nL  108 (339)
                      ..+...+++.|-..++. +++. ++..|+..|+.|
T Consensus       123 ~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  123 TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            55566688999999954 4555 788888877653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.78  E-value=4.4  Score=39.50  Aligned_cols=168  Identities=18%  Similarity=0.181  Sum_probs=91.0

Q ss_pred             CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHH
Q 048113           93 QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIV  171 (339)
Q Consensus        93 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~  171 (339)
                      +++..+..|+..+......-+...    ..++..+++++..           ++..+|..|++.|..+|.+ ++....+ 
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcED-----------ed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCED-----------EDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT------------SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhc-----------ccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            467788888888888775443322    2368999999998           8999999999999999995 5666665 


Q ss_pred             hcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh---cCChHHHHHHHHHHHHhhc
Q 048113          172 SSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE---EGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       172 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~l~~  248 (339)
                          ++.|+++|++.+  ..-...+-.+|..++..++         .+.+..+...+.   ++++.+++.++..|..-..
T Consensus        98 ----aDvL~QlL~tdd--~~E~~~v~~sL~~ll~~d~---------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~  162 (556)
T PF05918_consen   98 ----ADVLVQLLQTDD--PVELDAVKNSLMSLLKQDP---------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLK  162 (556)
T ss_dssp             ----HHHHHHHTT-----HHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred             ----HHHHHHHHhccc--HHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence                557899998742  2222222233332333332         234555555554   5677788888876643322


Q ss_pred             cCch-hHH-HHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          249 SCRD-KYR-SSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       249 ~~~~-~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .-+. ... ..=.+.-++..+-+.+.+.+..--.....+|..+..
T Consensus       163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            1111 111 011112233444455666555444555566666654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.70  E-value=0.59  Score=43.93  Aligned_cols=211  Identities=17%  Similarity=0.155  Sum_probs=115.6

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccC----CcchhhHHhhc-C-ChHHHHHhhcC---CChhHHHHHHHHHHHHh
Q 048113           39 GIIAPLISMLCSQDYEAIEAALLSLLSLACG----SERNKIRIVKS-G-IVPVLLEVLQC---QSTTLIELTVAAMLILS  109 (339)
Q Consensus        39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~----~~~~~~~i~~~-g-~i~~Lv~lL~~---~~~~~~~~a~~~L~nLs  109 (339)
                      .....+...+.+..-..|+.|+++++|++.-    -|..+..-... | .+..+++.-..   ....++.++.++|.|++
T Consensus       433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            3334444555555667899999999998751    22211111111 1 13333332221   23568889999999988


Q ss_pred             cCcc----chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChH-HH-HhcCcHHHHHHHh
Q 048113          110 SCLE----NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLIS-PI-VSSGVTYCLLQLI  183 (339)
Q Consensus       110 ~~~~----~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~-~i-~~~g~i~~Lv~ll  183 (339)
                      ..-+    +-......+.+..+.+---.+          ...+++-+++.++.||-+++..+- .. ...-+++.|..++
T Consensus       513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~----------~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  513 QFLQPIEKPTFAEIIEESIQALISTVLTE----------AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV  582 (728)
T ss_pred             HHHHHhhhccHHHHHHHHHHhcccceecc----------cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence            5221    111112234444444433232          578899999999999988776532 11 2224678888888


Q ss_pred             hccccCchHHHHHHHHHHHhhcCCHhhh-HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcC
Q 048113          184 HSSEKSSGLTEKAIALLENIVSSSEDAL-QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEG  262 (339)
Q Consensus       184 ~~~~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g  262 (339)
                      .+.. +-+++.+|.++|. . ...+++. ..+.   =-...++..|...    .+.......+.+..    .+..+..  
T Consensus       583 ~~~~-NFKVRi~AA~aL~-v-p~~re~~~d~~~---Lsw~~lv~aLi~s----~~~v~f~eY~~~Ds----l~~q~c~--  646 (728)
T KOG4535|consen  583 TSCK-NFKVRIRAAAALS-V-PGKREQYGDQYA---LSWNALVTALQKS----EDTIDFLEYKYCDS----LRTQICQ--  646 (728)
T ss_pred             HHhc-cceEeehhhhhhc-C-CCCcccchhHHh---HHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHH--
Confidence            8864 6889999999998 3 3332211 1111   1234445544321    12233444555522    4455544  


Q ss_pred             ChHHHHHhhhcCC
Q 048113          263 VMPGLLQLSVDGT  275 (339)
Q Consensus       263 ~i~~L~~ll~~~~  275 (339)
                      ++..+..+.++++
T Consensus       647 av~hll~la~Ssd  659 (728)
T KOG4535|consen  647 ALIHLLSLASSSD  659 (728)
T ss_pred             HHHHHHHHhhccc
Confidence            5666666666654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.2  Score=48.61  Aligned_cols=135  Identities=19%  Similarity=0.197  Sum_probs=90.7

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE  117 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~  117 (339)
                      +|+--.++.=|.+.-.++|..|...++.|+...|.....     .+..|+.+++.+...+|..|..+|..++..-.    
T Consensus       372 sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~----  442 (823)
T KOG2259|consen  372 SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA----  442 (823)
T ss_pred             ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe----
Confidence            333445555566667799999999999999966654432     46779999999999999999999999886522    


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI  197 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~  197 (339)
                       ....-++.+..-|..           .++++++..-..|.+.=..+.++-.+    ++..|.+.|..++++.+-...|+
T Consensus       443 -i~eeql~~il~~L~D-----------~s~dvRe~l~elL~~~~~~d~~~i~m----~v~~lL~~L~kyPqDrd~i~~cm  506 (823)
T KOG2259|consen  443 -IREEQLRQILESLED-----------RSVDVREALRELLKNARVSDLECIDM----CVAHLLKNLGKYPQDRDEILRCM  506 (823)
T ss_pred             -ecHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHhhhCCCCcHHHHHHH
Confidence             233457778888877           68888887777776654444444444    24445555554433333333333

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.54  E-value=0.63  Score=43.99  Aligned_cols=140  Identities=16%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcch-------------hh
Q 048113           11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN-------------KI   75 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-------------~~   75 (339)
                      ..+...+..+...+..+++.  .|..=.....+..|+.++++  +++...|++.+..+..+.+..             |+
T Consensus       241 ~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQ  318 (415)
T PF12460_consen  241 SEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQ  318 (415)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhH
Confidence            34556677788888888776  33332334567777888766  778889999999888842322             22


Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                      ++.. ..+|.|++.....+.+.+..-+.+|.++..+-+......+ ...+|.|++-|..           .+.+++..++
T Consensus       319 R~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~-----------~~~~v~~s~L  386 (415)
T PF12460_consen  319 RFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL-----------PDADVLLSSL  386 (415)
T ss_pred             HHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC-----------CCHHHHHHHH
Confidence            2222 2567777777777777888888899888875553333333 3478888888877           7888999999


Q ss_pred             HHHHhhcCCC
Q 048113          155 ATLHNLSTCH  164 (339)
Q Consensus       155 ~~L~nLs~~~  164 (339)
                      .+|..+....
T Consensus       387 ~tL~~~l~~~  396 (415)
T PF12460_consen  387 ETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHcC
Confidence            9999987654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.22  E-value=1.9  Score=42.50  Aligned_cols=106  Identities=16%  Similarity=0.111  Sum_probs=79.0

Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .|.+..+++...+++..+|...+..|..++..........-.+..+++..-+..           ..+.+|..|+.+|+.
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D-----------rep~VRiqAv~aLsr  152 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD-----------REPNVRIQAVLALSR  152 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-----------cCchHHHHHHHHHHH
Confidence            466777788888889999999999999988755445555556777888777767           689999999999999


Q ss_pred             hcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          160 LSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      +-.++.+-    +..++..++.+++++ +++++++.++..+.
T Consensus       153 lQ~d~~de----e~~v~n~l~~liqnD-pS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  153 LQGDPKDE----ECPVVNLLKDLIQND-PSDEVRRAALSNIS  189 (892)
T ss_pred             HhcCCCCC----cccHHHHHHHHHhcC-CcHHHHHHHHHhhc
Confidence            96433211    134566788888876 47888888866555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.19  E-value=1.3  Score=44.73  Aligned_cols=195  Identities=12%  Similarity=0.054  Sum_probs=122.4

Q ss_pred             HHHHhccCCcchhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchH--HHHHHHhcCCCCCC
Q 048113           62 SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAI--QRLVEILNGDLADD  138 (339)
Q Consensus        62 ~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~  138 (339)
                      +|.+.+..+++++..+.+.|++..+..++..- ..+++..++..+.|++...+.+........+  ..+-.++...    
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w----  569 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW----  569 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc----
Confidence            78899999999999999999999999999865 5678999999999999765544332221112  2333344441    


Q ss_pred             CCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113          139 DNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATC  218 (339)
Q Consensus       139 ~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~  218 (339)
                            .+.+.-..|+..|..+..+.+.   ....+.                 +..+...+.+.....+........ .
T Consensus       570 ------~~~ersY~~~siLa~ll~~~~~---~~~~~~-----------------r~~~~~~l~e~i~~~~~~~~~~~~-~  622 (699)
T KOG3665|consen  570 ------DSIERSYNAASILALLLSDSEK---TTECVF-----------------RNSVNELLVEAISRWLTSEIRVIN-D  622 (699)
T ss_pred             ------chhhHHHHHHHHHHHHHhCCCc---Cccccc-----------------hHHHHHHHHHHhhccCccceeehh-h
Confidence                  3447778899899888665443   111111                 111222222122222222222222 2


Q ss_pred             CcHHH-HHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh-hcCCHHHHHHHHHHHHH
Q 048113          219 GAIRA-LVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS-VDGTWRAKNMARDLLLL  288 (339)
Q Consensus       219 g~i~~-Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~A~~~L~~  288 (339)
                      ..+.+ +..++.. ..+..+-.|++++.++....+. +++.+.+.|+++.+.++. ......++..+...+.+
T Consensus       623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence            33333 5555553 4567788899999999988765 788888899999998873 33345556666555543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.16  E-value=0.11  Score=29.15  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=25.4

Q ss_pred             hHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          264 MPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       264 i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      +|.+++++.+.++.+|..|+.+|..+.+.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999888753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.09  E-value=3.9  Score=36.03  Aligned_cols=217  Identities=17%  Similarity=0.182  Sum_probs=134.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCS--QDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      .|=..|.++++..|.+|+..|..+... -+.. ....-+..|+.+..+  +|......++..+..|... ...     ..
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~-~~~-----~~   75 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKM-KNF-----SP   75 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhC-cCC-----Ch
Confidence            455678899999999999999998887 3333 333336777776654  4666777778888877752 221     11


Q ss_pred             CChHHHHHhh-cCC-----ChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           81 GIVPVLLEVL-QCQ-----STTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        81 g~i~~Lv~lL-~~~-----~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      +....+++.+ ++-     ....|..+...+..+.....  ..+.  ..+.+..+++.+..+          .||.....
T Consensus        76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~--~~l~~~~~~fv~~~i~~~~gE----------kDPRnLl~  143 (262)
T PF14500_consen   76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR--EALQSMGDDFVYGFIQLIDGE----------KDPRNLLL  143 (262)
T ss_pred             hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH--HHHHhchhHHHHHHHHHhccC----------CCHHHHHH
Confidence            1233333332 221     23467777777777765432  2333  245788899998875          78998888


Q ss_pred             HHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhcc-------ccCc--hH-HHHHHHHHHHhhcCCHhhhHHHHhhCCcHH
Q 048113          153 AIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS-------EKSS--GL-TEKAIALLENIVSSSEDALQEIAATCGAIR  222 (339)
Q Consensus       153 a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~--~~-~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~  222 (339)
                      +...+..+...=+.      ....+.+.+.+..+       ++++  .+ .+.--..|.+-++.++    .+.  .-++|
T Consensus       144 ~F~l~~~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa--~~~~p  211 (262)
T PF14500_consen  144 SFKLLKVILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFA--PFAFP  211 (262)
T ss_pred             HHHHHHHHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhH--HHHHH
Confidence            88888877553221      23445555555331       1111  22 2233344443333333    232  35789


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHhhccCc
Q 048113          223 ALVETIEEGSPQCKEHAVAILLLICKSCR  251 (339)
Q Consensus       223 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  251 (339)
                      .|++-|.++++.++..++.+|...+...+
T Consensus       212 ~LleKL~s~~~~~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  212 LLLEKLDSTSPSVKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999988775543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=94.08  E-value=0.38  Score=48.50  Aligned_cols=212  Identities=16%  Similarity=0.148  Sum_probs=130.2

Q ss_pred             CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc-------------hhhHH
Q 048113           13 ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER-------------NKIRI   77 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-------------~~~~i   77 (339)
                      +.+.+..|...+..+.+.  .|..-....+-..++..|++  +++-..|+.++..+..+++.             .|+++
T Consensus       787 s~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf  864 (1030)
T KOG1967|consen  787 SLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF  864 (1030)
T ss_pred             CcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH
Confidence            445566777777777766  44444445566667777766  33333444555444442221             12222


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-h-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-S-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      . ...+|.|++.+...+...+..-..+|.+...+-+. +.+. + ....|.|++-|.-           .+..++..+.+
T Consensus       865 F-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~-----------~D~~v~vstl~  931 (1030)
T KOG1967|consen  865 F-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM-----------PDVIVRVSTLR  931 (1030)
T ss_pred             H-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC-----------CccchhhhHhh
Confidence            2 35789999988865666666666777776654443 3332 2 3467777777777           68889999999


Q ss_pred             HHHhhcC-CCCChHHHHhcCcHHHHHHHhhcccc-CchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113          156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEK-SSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGS  232 (339)
Q Consensus       156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~  232 (339)
                      ++.-+.. .+.....=++ -.+|.+..+=.+.+. ..-+++.|+.+|. .+.. .|..+-.-.. ..++..|+..|.++.
T Consensus       932 ~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~-aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen  932 TIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLN-ALTRRLPTKSLLSFR-PLVLRALIKILDDKK 1008 (1030)
T ss_pred             hhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHH-HHhccCCCccccccc-HHHHHHhhhccCcHH
Confidence            9887755 3332221111 246666665555421 1567888999998 6666 5554433333 578899999998877


Q ss_pred             hHHHHHHHHH
Q 048113          233 PQCKEHAVAI  242 (339)
Q Consensus       233 ~~~~~~a~~~  242 (339)
                      ..+++.|+.+
T Consensus      1009 RlVR~eAv~t 1018 (1030)
T KOG1967|consen 1009 RLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHHHH
Confidence            7788888765

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.03  E-value=8.3  Score=39.66  Aligned_cols=260  Identities=11%  Similarity=0.050  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHHHHHH-HH----HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113           13 ERETQIQAANELGKLSRR-QK----HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL   87 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~-~~----~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv   87 (339)
                      ++....-|+++++.++.- .+    +...+.=.++-+...++++.-.+|..|++.+..++.-  +.+..-.-..+.....
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~  508 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI--DFKDPNNLSEALELTH  508 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHH
Confidence            556677788999888854 11    1222333444445566777778999999999999952  2222222233455666


Q ss_pred             Hhhc-CCChhHHHHHHHHHHHHhcCcc-chHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH-HhhcC
Q 048113           88 EVLQ-CQSTTLIELTVAAMLILSSCLE-NKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL-HNLST  162 (339)
Q Consensus        88 ~lL~-~~~~~~~~~a~~~L~nLs~~~~-~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L-~nLs~  162 (339)
                      .+|. +.+-.++..|+-+|..+..+.+ .++.+.  -.+.++.|+++.+..           ..+.....+..+ +..+.
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-----------End~Lt~vme~iV~~fse  577 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-----------ENDDLTNVMEKIVCKFSE  577 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHH
Confidence            6666 5556688888899988776554 344443  245677777777662           333333333222 22221


Q ss_pred             -CCCChHHHHhcCcHHHHHHHhhcc----ccCchHHHHHHHHHHH------hhcCCHhhhHHHHhhCCcHHHHHHHhhcC
Q 048113          163 -CHQLISPIVSSGVTYCLLQLIHSS----EKSSGLTEKAIALLEN------IVSSSEDALQEIAATCGAIRALVETIEEG  231 (339)
Q Consensus       163 -~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n------~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~  231 (339)
                       -......+++ .......++++..    +.+++=...|.++|..      .+..+++.-+.+-  .-+++.+-..|++.
T Consensus       578 ElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le--~~~l~vi~~iL~~~  654 (1010)
T KOG1991|consen  578 ELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE--PIVLPVIGFILKND  654 (1010)
T ss_pred             hhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHh
Confidence             1112222222 2444556666531    1111222333333331      1122333333332  23556655666666


Q ss_pred             ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          232 SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       232 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      -.+.-+.++.....+....++ ....|++  ..+.+.+........--....-+|.|+..
T Consensus       655 i~dfyeE~~ei~~~~t~~~~~-Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  655 ITDFYEELLEIVSSLTFLSKE-ISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             hHHHHHHHHHHHhhhhhhhcc-cCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence            566667777777666654422 3344443  45555555555444433444445554433

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=93.82  E-value=0.61  Score=41.15  Aligned_cols=168  Identities=19%  Similarity=0.146  Sum_probs=102.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcC--ChHHHHHHhcc----CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERG--IIAPLISMLCS----QDYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g--~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      +...+.+.+++.+.-++..+|-+..+  ....+...+  +...+..++..    ..+..+..++++++|+-. ++..+..
T Consensus        68 ~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~~~~~~  146 (268)
T PF08324_consen   68 LLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HPPGRQL  146 (268)
T ss_dssp             HHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SCCCHHH
T ss_pred             HHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CCccHHH
Confidence            34445555556677777777776654  333443322  34444444433    367889999999999999 6888888


Q ss_pred             HhhcC--ChHHHHHhhcCC----ChhHHHHHHHHHHHHhcCc-cch-HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113           77 IVKSG--IVPVLLEVLQCQ----STTLIELTVAAMLILSSCL-ENK-LEIASSGAIQRLVEILNGDLADDDNSYGRISVQ  148 (339)
Q Consensus        77 i~~~g--~i~~Lv~lL~~~----~~~~~~~a~~~L~nLs~~~-~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~  148 (339)
                      +.+..  .+...+..+...    +..++..++..++|++..- ..+ ..=.....+..++..+....         .+++
T Consensus       147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~---------~d~E  217 (268)
T PF08324_consen  147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREE---------SDEE  217 (268)
T ss_dssp             HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCH---------TSHH
T ss_pred             HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccc---------CCHH
Confidence            77663  344444444443    5778999999999998411 111 10011224556666443321         5899


Q ss_pred             HHHHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHH
Q 048113          149 AKIDAIATLHNLSTCHQLISPIVSS-GVTYCLLQL  182 (339)
Q Consensus       149 ~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~l  182 (339)
                      ....++-+|.+|...+.......+. |+-..+-..
T Consensus       218 a~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~  252 (268)
T PF08324_consen  218 ALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKK  252 (268)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHH
Confidence            9999999999998766666666554 444443333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.79  E-value=4.1  Score=37.87  Aligned_cols=189  Identities=12%  Similarity=0.112  Sum_probs=114.1

Q ss_pred             CCChhHHHHHHHHHHHHhcCccch-HHHHhcchHHHHHHHhcCCCCCCCCccCC-CCHHHHHHHHHHHHhhcCCCCChHH
Q 048113           92 CQSTTLIELTVAAMLILSSCLENK-LEIASSGAIQRLVEILNGDLADDDNSYGR-ISVQAKIDAIATLHNLSTCHQLISP  169 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~-~~~~~~~~a~~~L~nLs~~~~~~~~  169 (339)
                      ..+..-+..|..+|.+.-...++. ....-..-++.+++.++.+-. .....+. .+..+...|+++|..+-.+++....
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~-~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~   82 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDIS-SSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST   82 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence            445566777777887765433322 111123345566665554211 0011111 3677888999999998877776655


Q ss_pred             HHhc--C-cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-----CChHHHHHHHH
Q 048113          170 IVSS--G-VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-----GSPQCKEHAVA  241 (339)
Q Consensus       170 i~~~--g-~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~  241 (339)
                      +-+.  . .+...+..+.++..+..+....+.+|. .-.-.+    .+.. ...+..++..+..     ++..+....+.
T Consensus        83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls-~Q~f~~----~~~~-~~~~~~l~~~l~~i~~~~~s~si~~erL~  156 (372)
T PF12231_consen   83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLS-DQKFSP----KIMT-SDRVERLLAALHNIKNRFPSKSIISERLN  156 (372)
T ss_pred             CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCCC----cccc-hhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence            5443  1 456666777665445567777777777 322221    2322 3455555555432     45667777888


Q ss_pred             HHHHhhccCchhHHHHHHh-c-CChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          242 ILLLICKSCRDKYRSSILK-E-GVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~-~-g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ++.++....+    +.|.+ . ..+|.++..+-+....++.+|..++..+..
T Consensus       157 i~~~ll~q~p----~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~  204 (372)
T PF12231_consen  157 IYKRLLSQFP----QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK  204 (372)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            9999886543    34444 3 389999988888888998888887766654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=5.7  Score=41.59  Aligned_cols=229  Identities=13%  Similarity=0.106  Sum_probs=126.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHH--HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-chhhHHhhcCChH
Q 048113           10 LNGERETQIQAANELGKLSRR--QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVP   84 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~   84 (339)
                      ++.+..+|.++-+.|..++..  ......+  ..+...|..-.++.+...+..++.+|..|-...+ ++...+ ..-+.+
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~E  742 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLIPE  742 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Confidence            355888999999999998875  2222221  2233344445555566778888888887776433 222222 222233


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhc----CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           85 VLLEVLQCQSTTLIELTVAAMLILSS----CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      .++.+ ...+...+..|..+|..+..    .++..+.  ....+...+.++......       +.+......+-++..+
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~g-------d~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVG-------DSTRVVASDIVAITHI  812 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcc-------cHHHHHHHHHHHHHHH
Confidence            33333 56677888999888888762    1111111  122455556555441100       2222222224444444


Q ss_pred             cCCCC-ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113          161 STCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA  239 (339)
Q Consensus       161 s~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a  239 (339)
                      ..... .-....=.+.++.+...|.+.  +.++...|++.+.-.+...|+..-.--. ...++.+..++++....++...
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kv  889 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKV  889 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHH
Confidence            33221 111111123455555556654  5789999999998445555654322222 2477888888877777788777


Q ss_pred             HHHHHHhhccCch
Q 048113          240 VAILLLICKSCRD  252 (339)
Q Consensus       240 ~~~L~~l~~~~~~  252 (339)
                      -..+-.|+...+.
T Consensus       890 r~LlekLirkfg~  902 (1176)
T KOG1248|consen  890 RLLLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHHHhCH
Confidence            7777777765444

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.59  E-value=0.89  Score=38.49  Aligned_cols=147  Identities=17%  Similarity=0.060  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-----ChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHH
Q 048113           55 AIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-----STTLIELTVAAMLILSSCLEN--KLEIASSGAIQRL  127 (339)
Q Consensus        55 ~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~L  127 (339)
                      -..+|+..|..++. .|+.|..+.++-.--.+-+.|...     -+.++.-+++.+..|..+++-  ...+.....+|.+
T Consensus       116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            34578888888999 599999999887655555555332     245788899999999976542  3444577899999


Q ss_pred             HHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-C-------cHHHHHHHhhccccCchHHHHHHHH
Q 048113          128 VEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-G-------VTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       128 v~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g-------~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                      ++++..           ++...+..|+..+..+-.++.+-..+++. .       .+..++.-+.+. .+..+..+++++
T Consensus       195 LrIme~-----------gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~-~~~RLlKh~iRc  262 (315)
T COG5209         195 LRIMEL-----------GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL-GSTRLLKHAIRC  262 (315)
T ss_pred             HHHHHh-----------hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHH
Confidence            999999           78888888888888887788777776664 2       222333333332 246778888877


Q ss_pred             HHHhhcCCHhhhHHHH
Q 048113          200 LENIVSSSEDALQEIA  215 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~  215 (339)
                      -- -++..++.|..+.
T Consensus       263 Yl-RLsd~p~aR~lL~  277 (315)
T COG5209         263 YL-RLSDKPHARALLS  277 (315)
T ss_pred             he-eecCCHhHHHHHh
Confidence            77 5777777776553

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.47  E-value=6.4  Score=39.88  Aligned_cols=219  Identities=14%  Similarity=0.121  Sum_probs=121.8

Q ss_pred             CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHH
Q 048113           93 QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIV  171 (339)
Q Consensus        93 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~  171 (339)
                      +-+.++..++..|..+......+..+...+.+...+..+++           .++-+--+|+..+..||. .++      
T Consensus       739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-----------edsyvyLnaI~gv~~Lcevy~e------  801 (982)
T KOG4653|consen  739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-----------EDSYVYLNAIRGVVSLCEVYPE------  801 (982)
T ss_pred             CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-----------cCceeeHHHHHHHHHHHHhcch------
Confidence            33457888888888888766666777778888889999988           677777788887777775 333      


Q ss_pred             hcCcHHHHHHH-hhccccC-chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113          172 SSGVTYCLLQL-IHSSEKS-SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       172 ~~g~i~~Lv~l-l~~~~~~-~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                        ..+|.|... ....... .+.+...-.++.+.+-..++-.....  +-.+......+++++...+.-+++++.++|.-
T Consensus       802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~  877 (982)
T KOG4653|consen  802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQL  877 (982)
T ss_pred             --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence              355666653 2222111 22233333444422222222111111  11233334444555555677788888888864


Q ss_pred             CchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcchhhhhh----hHHHHHHHHHHHhcC-cccch
Q 048113          250 CRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSRSKQLK----NELVEQIMQEIDAEG-DTVAG  323 (339)
Q Consensus       250 ~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~-~~~~~  323 (339)
                      ..-.+...+.+  .+..++.+.+ +++..+|+.|+.++..+-.+-.+  .--.+-    -+..+.+..-+..+. |.++.
T Consensus       878 ~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~--dlLpilr~~l~Dl~~tl~~~vr~~~dd~~kl  953 (982)
T KOG4653|consen  878 LAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE--DLLPILRLLLIDLDETLLSYVRQHDDDGLKL  953 (982)
T ss_pred             HhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            21112223333  4555555544 56788899999999888765431  011111    123333333333333 44577


Q ss_pred             HHHHHHHHHHHHh
Q 048113          324 TTLRLVEEMIAKL  336 (339)
Q Consensus       324 ~a~~~l~~~v~~~  336 (339)
                      .|...+.++-+.|
T Consensus       954 haql~leei~a~l  966 (982)
T KOG4653|consen  954 HAQLCLEEIQAAL  966 (982)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776655

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.01  E-value=7.1  Score=35.70  Aligned_cols=163  Identities=14%  Similarity=0.074  Sum_probs=119.4

Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChH-HHHhc--Cc-HHHHHHHhhccccCc
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLIS-PIVSS--GV-TYCLLQLIHSSEKSS  190 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~-~i~~~--g~-i~~Lv~ll~~~~~~~  190 (339)
                      ..+...+.+..|+..|..           -+-+.+..+..+..++-.. ..++. ..++.  .- -+.|..++..+ ..+
T Consensus        70 ~Ei~~~dll~~Li~~L~~-----------L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~  137 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPK-----------LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENP  137 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGG-----------S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GST
T ss_pred             HHHHHhCHHHHHHHHhhh-----------CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCc
Confidence            345567899999999988           7999999999999999763 34433 22221  22 34444444444 467


Q ss_pred             hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhc---CChHHH
Q 048113          191 GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKE---GVMPGL  267 (339)
Q Consensus       191 ~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---g~i~~L  267 (339)
                      ++...|-.+|. .|..++...+.+.. ...+..+.+.++.++-++...|...+..+-..... ........   ......
T Consensus       138 dial~~g~mlR-ec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~-~~a~fl~~n~d~ff~~~  214 (335)
T PF08569_consen  138 DIALNCGDMLR-ECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK-LVAEFLSNNYDRFFQKY  214 (335)
T ss_dssp             TTHHHHHHHHH-HHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH-HHHHHHHHTHHHHHHHH
T ss_pred             cccchHHHHHH-HHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHH
Confidence            88899999999 89999888888887 78899999999999988888898888876554433 44444443   467788


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          268 LQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       268 ~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ..++.+++--+++.++.+|.-|--.+
T Consensus       215 ~~Ll~s~NYvtkrqslkLL~ellldr  240 (335)
T PF08569_consen  215 NKLLESSNYVTKRQSLKLLGELLLDR  240 (335)
T ss_dssp             HHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred             HHHccCCCeEeehhhHHHHHHHHHch
Confidence            88999999999999999997776544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.99  E-value=7  Score=36.96  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             cHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-Hhh-------------hHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          175 VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-EDA-------------LQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       175 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      .++.|++++.+    +++-..+...+. .+..+ ++.             |+++..  ..+|.|++..+..+...+.+-.
T Consensus       272 ~~~~L~~lL~~----~~~g~~aA~~f~-il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL  344 (415)
T PF12460_consen  272 LLDKLLELLSS----PELGQQAAKAFG-ILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYL  344 (415)
T ss_pred             HHHHHHHHhCC----hhhHHHHHHHHh-hHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHH
Confidence            45667787776    355566666666 44444 322             333432  4678888888877777888889


Q ss_pred             HHHHHhhccCchhHHHHHHh--cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHH
Q 048113          241 AILLLICKSCRDKYRSSILK--EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQE  313 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~  313 (339)
                      .+|..+..+-|.   +.+..  ...+|.|++-+...++.++..+..+|..+....+      ....+.+..++..
T Consensus       345 ~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~------~~i~~hl~sLI~~  410 (415)
T PF12460_consen  345 TALSHLLKNVPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP------ELISEHLSSLIPR  410 (415)
T ss_pred             HHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHHHH
Confidence            999999877654   22322  4588888888888999999999999988887542      2334455555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.90  E-value=8  Score=36.04  Aligned_cols=192  Identities=12%  Similarity=0.075  Sum_probs=116.9

Q ss_pred             HHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCC------------------------h------hHHHHHHHHH--
Q 048113           58 AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQS------------------------T------TLIELTVAAM--  105 (339)
Q Consensus        58 ~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~------------------------~------~~~~~a~~~L--  105 (339)
                      .|.+.|-.+....+..-..+.+.||+..++..|..+-                        .      --|...+..|  
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            3555565565545555667777788877776653210                        0      0122333333  


Q ss_pred             --HHHhc-CccchHH---HHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHH
Q 048113          106 --LILSS-CLENKLE---IAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTY  177 (339)
Q Consensus       106 --~nLs~-~~~~~~~---i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~  177 (339)
                        ..+.. .......   +.+ ......|..++++...        -.+.+-..|+.++.....+ |..-..+.++|.++
T Consensus        83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~--------FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEV--------FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccc--------cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence              33333 2222222   334 4556677777777421        3577888899999999885 45567778889999


Q ss_pred             HHHHHhh-cc-ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC--hH-----HHHHHHHHHHHhhc
Q 048113          178 CLLQLIH-SS-EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS--PQ-----CKEHAVAILLLICK  248 (339)
Q Consensus       178 ~Lv~ll~-~~-~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~-----~~~~a~~~L~~l~~  248 (339)
                      .+++.+. .. .++.++...--.++. .+|-+..+.+.+.+ .+.++.+++++.++.  ..     .-...-..+-.|.+
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~-AicLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~R  232 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLS-AICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMR  232 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHh-HHhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHc
Confidence            9999988 43 234555555556777 67789999999987 799999999997642  11     11122234455666


Q ss_pred             cCchhHHHHHHh
Q 048113          249 SCRDKYRSSILK  260 (339)
Q Consensus       249 ~~~~~~~~~~~~  260 (339)
                      +.+. .|..+.+
T Consensus       233 H~p~-Lk~~i~~  243 (379)
T PF06025_consen  233 HHPS-LKPDIID  243 (379)
T ss_pred             cCHH-HHHHHHH
Confidence            6543 6665544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.57  E-value=6.1  Score=39.39  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=65.2

Q ss_pred             CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCch
Q 048113          174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRD  252 (339)
Q Consensus       174 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~  252 (339)
                      ++|..|++.--++ .+.++++.|..+|+ .++..+         ....+..|++|.. -++-++--++.+|.-.|...+.
T Consensus       554 kair~lLh~aVsD-~nDDVrRaAVialG-FVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~  622 (929)
T KOG2062|consen  554 KAIRRLLHVAVSD-VNDDVRRAAVIALG-FVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL  622 (929)
T ss_pred             hhHHHhhcccccc-cchHHHHHHHHHhe-eeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc
Confidence            4667777774443 25788888888888 443221         2345677777764 4788888888888887776443


Q ss_pred             hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          253 KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       253 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                        ++      ++..|-.+..+...=+|+.|+-.+.++--
T Consensus       623 --~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  623 --KE------AINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             --HH------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence              33      34455555666667788888888877754

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=4.2  Score=41.10  Aligned_cols=175  Identities=16%  Similarity=0.126  Sum_probs=115.1

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH
Q 048113            7 DNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP   84 (339)
Q Consensus         7 ~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~   84 (339)
                      ..+.++-+.+|-.++..|+.+.++  ....+...+++...+.+|++.++-+--+|.+.+..||.-.        ....+|
T Consensus       734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--------~e~il~  805 (982)
T KOG4653|consen  734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--------PEDILP  805 (982)
T ss_pred             HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--------chhhHH
Confidence            344566677899999999999996  4555667899999999999999999999999888888732        234567


Q ss_pred             HHHHhhcCCC----hhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           85 VLLEVLQCQS----TTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        85 ~Lv~lL~~~~----~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .|...-.+..    .+.+...-.++.++...-. -.....+ -.+...++..++           .+...|..++..+.+
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvre-----------pd~~~RaSS~a~lg~  873 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVRE-----------PDHEFRASSLANLGQ  873 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCC-----------chHHHHHhHHHHHHH
Confidence            7777433321    2333344467777664221 1111111 345666666665           677789999999999


Q ss_pred             hcCCCC--ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhh
Q 048113          160 LSTCHQ--LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV  204 (339)
Q Consensus       160 Ls~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l  204 (339)
                      ||.-..  .-..+.+  ++..++.+.+.+ ++..+++.|+..+...+
T Consensus       874 Lcq~~a~~vsd~~~e--v~~~Il~l~~~d-~s~~vRRaAv~li~~lL  917 (982)
T KOG4653|consen  874 LCQLLAFQVSDFFHE--VLQLILSLETTD-GSVLVRRAAVHLLAELL  917 (982)
T ss_pred             HHHHHhhhhhHHHHH--HHHHHHHHHccC-CchhhHHHHHHHHHHHH
Confidence            987322  2223333  455566666543 46788899999888333

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=92.31  E-value=8.9  Score=36.42  Aligned_cols=282  Identities=12%  Similarity=0.067  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-----CcchhhHHhhcCChHH
Q 048113           14 RETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG-----SERNKIRIVKSGIVPV   85 (339)
Q Consensus        14 ~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-----~~~~~~~i~~~g~i~~   85 (339)
                      ...|.++...|..++..   .|..+.+.  ...+..-+....+.++..++..+..+-.+     .|+..+.=..-|..-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            35788999999988886   44444432  23334455667899999999988777652     2222222222221111


Q ss_pred             HH------H-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           86 LL------E-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        86 Lv------~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      +.      . .-++..+..+..++.++.+++......-   ..|--..+.-++....       .+.+.-++..|.+++.
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l---pn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~  416 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL---PNDRQTLCITFLLGCN-------DSKNRLVKAAASRALG  416 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC---CCcchhhhHHHHhccc-------chHHHHHHHHHHhhce
Confidence            11      0 1122234567777777777753211100   0110011111221110       0045556777887777


Q ss_pred             hhcCCCCChHHH-HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc-----CCHhh---hHHHHhhCCcHHHHHHHhh
Q 048113          159 NLSTCHQLISPI-VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS-----SSEDA---LQEIAATCGAIRALVETIE  229 (339)
Q Consensus       159 nLs~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-----~~~~~---~~~i~~~~g~i~~Lv~lL~  229 (339)
                      -+..++..+... .-..+...+...+.+.  .-..++++.++++| ++     ..|..   ..++..  -.+..+++.-.
T Consensus       417 VyVLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~Kaawtlgn-ITdAL~~~~Ps~~s~~eR~sg--~ll~~~~~~A~  491 (728)
T KOG4535|consen  417 VYVLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGN-ITDALIVNMPTPDSFQERFSG--LLLLKMLRSAI  491 (728)
T ss_pred             eEEeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhh-hHHHHHcCCCCchHHHHHHHH--HHHHHHHHHHH
Confidence            666666665443 2334555555556552  35667888888884 33     22221   122211  12333333222


Q ss_pred             ---cCChHHHHHHHHHHHHhhccCch----hHHHHHHhcCChHHHH-HhhhcCCHHHHHHHHHHHHHHhccCCCcchhhh
Q 048113          230 ---EGSPQCKEHAVAILLLICKSCRD----KYRSSILKEGVMPGLL-QLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ  301 (339)
Q Consensus       230 ---~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~  301 (339)
                         ....+++.++..+|.|+...-.+    ..++  ...|.+..+. ...-.+..++|=+|+.++.||-++..+..+..-
T Consensus       492 ~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~  569 (728)
T KOG4535|consen  492 EASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAP  569 (728)
T ss_pred             HhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCC
Confidence               13467889999999888653111    1111  1223333332 223456788999999999999998766334433


Q ss_pred             hhhHHHHHHHHHH
Q 048113          302 LKNELVEQIMQEI  314 (339)
Q Consensus       302 ~~~~~~~~i~~~~  314 (339)
                      .....+..+...+
T Consensus       570 wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  570 WASQAFNALTSLV  582 (728)
T ss_pred             chHHHHHHHHHHH
Confidence            4445555555444

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.18  E-value=0.8  Score=38.76  Aligned_cols=145  Identities=16%  Similarity=0.039  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc---C--CHHHHHHHHHHHHHhccCCcch-hhHHhhcCChHHHHH
Q 048113           17 QIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS---Q--DYEAIEAALLSLLSLACGSERN-KIRIVKSGIVPVLLE   88 (339)
Q Consensus        17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~---~--~~~~~~~A~~~L~~Ls~~~~~~-~~~i~~~g~i~~Lv~   88 (339)
                      ...|+..|.-++.+  .+..|.++..--.+-.+|..   .  .+.+|..++..++.|.+++.+. -..+....++|..++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            45566667667776  78888877654444455532   2  4468889999999999954443 334455699999999


Q ss_pred             hhcCCChhHHHHHHHHHHHHhcCccchHHHHh--------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           89 VLQCQSTTLIELTVAAMLILSSCLENKLEIAS--------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        89 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      +.+.+++--+..|+.++..+..++.+-+.+..        ......++..+-+.          ......+.++++-..|
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~----------~~~RLlKh~iRcYlRL  266 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL----------GSTRLLKHAIRCYLRL  266 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cchhHHHHHHHHheee
Confidence            99999888888888888888887776554442        23444555544442          6777888899998888


Q ss_pred             cCCCCChHHHH
Q 048113          161 STCHQLISPIV  171 (339)
Q Consensus       161 s~~~~~~~~i~  171 (339)
                      |.++..|..+.
T Consensus       267 sd~p~aR~lL~  277 (315)
T COG5209         267 SDKPHARALLS  277 (315)
T ss_pred             cCCHhHHHHHh
Confidence            88887665543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.16  E-value=2  Score=37.86  Aligned_cols=176  Identities=18%  Similarity=0.146  Sum_probs=102.3

Q ss_pred             CHHHHHHHHHHHHHhccCCcchhhHHhhcC--ChHHHHHhhcC----CChhHHHHHHHHHHHHhcCccchHHHHhcc--h
Q 048113           52 DYEAIEAALLSLLSLACGSERNKIRIVKSG--IVPVLLEVLQC----QSTTLIELTVAAMLILSSCLENKLEIASSG--A  123 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~  123 (339)
                      .++-+--++..++-+.. ++..-..+...+  ....+...+..    .++..+-.++++++|+-.+...+..+.+..  .
T Consensus        76 p~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~  154 (268)
T PF08324_consen   76 PPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSS  154 (268)
T ss_dssp             -CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTC
T ss_pred             CCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccch
Confidence            33446677778888888 466655555443  24455554433    356688899999999998888887777543  3


Q ss_pred             HHHHHHHhcCCCCCCCCccCCC---CHHHHHHHHHHHHhhcC-CCCCh-HHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113          124 IQRLVEILNGDLADDDNSYGRI---SVQAKIDAIATLHNLST-CHQLI-SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA  198 (339)
Q Consensus       124 i~~Lv~ll~~~~~~~~~~~~~~---~~~~~~~a~~~L~nLs~-~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~  198 (339)
                      +...+.-+...          .   +..++..++..+.|++. ..+.+ ..=.....+..+++.+.....+++..-.++.
T Consensus       155 i~~~~~~~~~~----------~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  155 ILELLSSLLSS----------LLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCHCCCTT----------S-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHHHHHhhc----------cccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            44444433331          2   68889999999999975 22222 1111112455566644444346888999999


Q ss_pred             HHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChHHHHHH
Q 048113          199 LLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQCKEHA  239 (339)
Q Consensus       199 ~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a  239 (339)
                      ++++++ ..+..........|+-..+-..-+ ..++++++.+
T Consensus       225 AlGtL~-~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  225 ALGTLL-SSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHH-CCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHh-ccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence            999555 444444444432344333333322 2346666544

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.00  E-value=15  Score=36.95  Aligned_cols=97  Identities=10%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc----c-----ccCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113          145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS----S-----EKSSGLTEKAIALLENIVSSSEDALQEIA  215 (339)
Q Consensus       145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~----~-----~~~~~~~~~a~~~L~n~l~~~~~~~~~i~  215 (339)
                      .+.+++..++.....|+.+.+          +..++.+|+.    +     ++..+-+..-+.+++ .++....   .+.
T Consensus       329 ~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih-~cav~Fp---~~a  394 (948)
T KOG1058|consen  329 PDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH-ACAVKFP---EVA  394 (948)
T ss_pred             ccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH-HHhhcCh---HHH
Confidence            567777777776666655443          3344444422    1     112333455556666 4443321   222


Q ss_pred             hhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHH
Q 048113          216 ATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSI  258 (339)
Q Consensus       216 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  258 (339)
                        +.+++.|++.+.+.++......+..+.......+. .|..+
T Consensus       395 --atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~i  434 (948)
T KOG1058|consen  395 --ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASI  434 (948)
T ss_pred             --HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHH
Confidence              45788999999887765544444444443333322 44443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.84  E-value=2.9  Score=43.62  Aligned_cols=143  Identities=13%  Similarity=0.105  Sum_probs=101.2

Q ss_pred             hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ..|-+++.+++++-       .++|+.+..|.-+|+.+.. +.+.+..     ..|.|+..|... +++.++-++.-+++
T Consensus       920 f~piv~e~c~n~~~-------~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeks-p~p~IRsN~Vvalg  986 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGL-------FSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKS-PSPRIRSNLVVALG  986 (1251)
T ss_pred             HHHHHHHHhcCCCc-------CCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcC-CCceeeecchhecc
Confidence            45556666655421       1578999999999998843 4443332     478899999865 36777888877777


Q ss_pred             HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHH
Q 048113          202 NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNM  281 (339)
Q Consensus       202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~  281 (339)
                       -++....   .+++  -.-+.|-..|.+.++.+++.|..+|..|-..      .++.-.|.++.+...+.+++++++..
T Consensus       987 -Dlav~fp---nlie--~~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~Isdl 1054 (1251)
T KOG0414|consen  987 -DLAVRFP---NLIE--PWTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDL 1054 (1251)
T ss_pred             -chhhhcc---cccc--hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHH
Confidence             3432221   2222  3456777888889999999999999999754      35556899999999999999999999


Q ss_pred             HHHHHHHHh
Q 048113          282 ARDLLLLLR  290 (339)
Q Consensus       282 A~~~L~~l~  290 (339)
                      |-..-.-|+
T Consensus      1055 Ak~FF~Els 1063 (1251)
T KOG0414|consen 1055 AKSFFKELS 1063 (1251)
T ss_pred             HHHHHHHhh
Confidence            884444443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.35  E-value=1.2  Score=35.42  Aligned_cols=73  Identities=15%  Similarity=0.300  Sum_probs=63.7

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|.+-|.++++.++..|+..|-.+..+.+..+...+.....+..|++++.. .++.++.+...++...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            4567777888889999999999999999988888788888889999999999887 788999999999988765

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.35  E-value=10  Score=38.83  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=109.1

Q ss_pred             CCChhHHHHHHHHHHHHhcCccchHHHH-hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHH
Q 048113           92 CQSTTLIELTVAAMLILSSCLENKLEIA-SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISP  169 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~  169 (339)
                      +++..-+..|+.-+........ +.... ..|.+-.+++....+          .+..+...|+..|..++. .......
T Consensus       264 s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kD----------aN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  264 SKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKD----------ANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             ccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccC----------cchhHHHHHHHHHHHHHHhcchhhHH
Confidence            3445567777777776665444 22211 234455555555443          577788888888888876 3333221


Q ss_pred             HHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113          170 IVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       170 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                       ...+..+.+++-+...  ...++..++.++- .....      ... ....+.+...++++++.++..+...+......
T Consensus       333 -~~~~v~p~lld~lkek--k~~l~d~l~~~~d-~~~ns------~~l-~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~  401 (815)
T KOG1820|consen  333 -YAKNVFPSLLDRLKEK--KSELRDALLKALD-AILNS------TPL-SKMSEAILEALKGKNPQIKGECLLLLDRKLRK  401 (815)
T ss_pred             -HHHhhcchHHHHhhhc--cHHHHHHHHHHHH-HHHhc------ccH-HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence             2235777888888764  3455555444444 11111      011 34677888899999999998877776555443


Q ss_pred             CchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          250 CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                      .++.....-.-.+.+|.++....+.+.+++..|..++.-+-+.
T Consensus       402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            3321112222246899999999999999999999988666543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=91.16  E-value=9.7  Score=33.25  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=67.3

Q ss_pred             hHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113          123 AIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       123 ~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n  202 (339)
                      .|..|++=+..           ++.-++..++.++..|-+-          -.|+.|.+.|.+...++-++..|+.+|+ 
T Consensus       188 aI~al~~~l~~-----------~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALG-  245 (289)
T KOG0567|consen  188 AINALIDGLAD-----------DSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALG-  245 (289)
T ss_pred             HHHHHHHhccc-----------chHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHH-
Confidence            45566666655           6788888999998887332          2588888888776545666777888888 


Q ss_pred             hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                                .+.+ ..+++.|.+++.+.++-+++-+..+|-.+-
T Consensus       246 ----------aIa~-e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  246 ----------AIAD-EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             ----------hhcC-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                      3333 578889999999888888888877775543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=91.08  E-value=13  Score=34.63  Aligned_cols=132  Identities=10%  Similarity=0.136  Sum_probs=92.5

Q ss_pred             HHhh-cCChHHHHHhhcCC---ChhHHHHHHHHHHHHhcCccc-hHHHHhcchHHHHHHHhc-CCCCCCCCccCCCCHHH
Q 048113           76 RIVK-SGIVPVLLEVLQCQ---STTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILN-GDLADDDNSYGRISVQA  149 (339)
Q Consensus        76 ~i~~-~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~~~~~~~  149 (339)
                      .+.+ ......|..++.+.   .+.+-..|+.++..+..+++. -..+.+.|.++.+++.+. ....        .+.++
T Consensus       100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~--------~s~e~  171 (379)
T PF06025_consen  100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL--------PSSEV  171 (379)
T ss_pred             cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC--------CcHHH
Confidence            3445 33455555566665   367888899999999987765 667779999999999887 4211        47788


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCc------hHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          150 KIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSS------GLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       150 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~------~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                      ....-.+|..+|-+..+.+.+.+.+.++.+++++.+.. .-      +....--..+-.++..+|.-|..+.+
T Consensus       172 l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~-~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  172 LTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD-YVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH-HHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            88888899999999999999999999999999998742 11      12222223344344556666666654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=90.87  E-value=4.5  Score=32.70  Aligned_cols=145  Identities=18%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             chHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          122 GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       122 g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ..++.|.++++++          .+..+|..++++|..|-.-+..+......+. +   ..-.. +.........+....
T Consensus        10 ~LL~~L~~iLk~e----------~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~---~~~~~-~~~~~~~~~~l~~~~   74 (160)
T PF11865_consen   10 ELLDILLNILKTE----------QSQSIRREALRVLGILGALDPYKHKSIQKSL-D---SKSSE-NSNDESTDISLPMMG   74 (160)
T ss_pred             HHHHHHHHHHHhC----------CCHHHHHHHHHHhhhccccCcHHHhcccccC-C---ccccc-cccccchhhHHhhcc
Confidence            4577888999885          6799999999999999664444433222110 0   00000 001121222211111


Q ss_pred             HhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHH
Q 048113          202 NIVSSSEDALQEIAATCGAIRALVETIEEGS-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKN  280 (339)
Q Consensus       202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  280 (339)
                       .....++..    - .-++..|+++|++++ ..-+..++.++.++....+.++..-+  ..++|.++..+++.++..++
T Consensus        75 -~~~~~ee~y----~-~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e  146 (160)
T PF11865_consen   75 -ISPSSEEYY----P-TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLRE  146 (160)
T ss_pred             -CCCchHHHH----H-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHH
Confidence             111122222    2 346788999999865 44455677777777654333332222  24899999999988877666


Q ss_pred             HHHHHHHHH
Q 048113          281 MARDLLLLL  289 (339)
Q Consensus       281 ~A~~~L~~l  289 (339)
                      .-..-|..|
T Consensus       147 ~~~~qL~~l  155 (160)
T PF11865_consen  147 FYFQQLADL  155 (160)
T ss_pred             HHHHHHHHH
Confidence            544444333

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.83  E-value=11  Score=37.27  Aligned_cols=166  Identities=14%  Similarity=0.100  Sum_probs=102.3

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHH---HHHHHH---hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--
Q 048113            9 LLNGERETQIQAANELGKLSRR---QKHKLV---ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS--   80 (339)
Q Consensus         9 L~s~~~~~~~~a~~~L~~l~~~---~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--   80 (339)
                      +...+++.+.-|+.+||-+..+   +-..+-   ....+..++..+. .++..+..++++|.|+-. ++.+++.+...  
T Consensus       553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~  630 (745)
T KOG0301|consen  553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLE  630 (745)
T ss_pred             HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence            3344566778888888888876   222222   1335555666555 567888899999999999 58887777654  


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhc--CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSS--CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      -.+..++..=..++..++...+....|++.  ...+-    +.++.+.+...+.....+      ..+.+....++-||.
T Consensus       631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~------~~d~EA~yR~l~Alg  700 (745)
T KOG0301|consen  631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEP------VDDLEAIYRLLVALG  700 (745)
T ss_pred             HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhccc------chhHHHHHHHHHHHH
Confidence            111222222122345666666666666652  22211    145666666655442100      023345556788889


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhcc
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~  186 (339)
                      +|+..+.+...+.+.-.++.+++-+++.
T Consensus       701 tL~t~~~~~~~~A~~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  701 TLMTVDASVIQLAKNRSVDSIAKKLKEA  728 (745)
T ss_pred             hhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence            9998888888888887788888888764

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.70  E-value=1.5  Score=34.49  Aligned_cols=73  Identities=21%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..+.+-|+++++.++..|+..|-.+..+.+..+...+...+.+..|++++..      .++.++.+...++..-+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3567788888899999999999999999888877788888889999999999853      468899999999987765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=90.54  E-value=12  Score=38.50  Aligned_cols=180  Identities=15%  Similarity=0.141  Sum_probs=115.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--HHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQK--HKLVERGIIAPLISML-CSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~--~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|-..+.+.+|..|.+|++.+.....+.+  ..-...|.+..++... .+.+..+...|+.+|..++.......... .
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-A  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-H
Confidence            445566679999999999999988887733  1112244555555543 44477888999999999999644442222 3


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .++.|.++..+...-..++..+..++-.......      -...++.+..++++           .++..+......+..
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~-----------knp~~k~~~~~~l~r  397 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP------LSKMSEAILEALKG-----------KNPQIKGECLLLLDR  397 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcC-----------CChhhHHHHHHHHHH
Confidence            4678888888877766666665555533333111      12356777788888           788888876666655


Q ss_pred             hcC-CC-CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113          160 LST-CH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       160 Ls~-~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n  202 (339)
                      .-. .+ .....-.-.+.++.++....+.  +.+++..|..+++.
T Consensus       398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~  440 (815)
T KOG1820|consen  398 KLRKLGPKTVEKETVKTLVPHLIKHINDT--DKDVRKAALEAVAA  440 (815)
T ss_pred             HHhhcCCcCcchhhHHHHhHHHhhhccCC--cHHHHHHHHHHHHH
Confidence            433 22 2221111224666777777664  57889888887773

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.47  E-value=1.5  Score=45.69  Aligned_cols=135  Identities=13%  Similarity=0.065  Sum_probs=91.1

Q ss_pred             HHHHHHHhhcc--ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCch
Q 048113          176 TYCLLQLIHSS--EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQCKEHAVAILLLICKSCRD  252 (339)
Q Consensus       176 i~~Lv~ll~~~--~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~  252 (339)
                      .|.++...+++  ..++.++..|.-+|+..++-..+.    .  +.-+|.|+..+. +++|.++-+++.++..++...++
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----c--es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----C--ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----H--HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            44444444332  124678888888888666655432    2  235788999888 68899999999999999987655


Q ss_pred             hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhh-hHHHHHHHHHHHhcC-cccchHHHHHHH
Q 048113          253 KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLK-NELVEQIMQEIDAEG-DTVAGTTLRLVE  330 (339)
Q Consensus       253 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~~~a~~~l~  330 (339)
                       .-     +-.-+.|.+.+++.++.+|+.|...|.+|--..-       +. .+.+.. |..+..|+ +.++.-|+....
T Consensus       995 -li-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-------iKVKGql~e-MA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  995 -LI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-------IKVKGQLSE-MALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             -cc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-------hHhcccHHH-HHHHhcCCcHHHHHHHHHHHH
Confidence             22     2367889999999999999999999998866442       22 233333 33333555 555777774333

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=90.46  E-value=1.4  Score=44.68  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=101.1

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhc-Cccch
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENK  115 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~  115 (339)
                      ..++|.|++.....+...+.+=+.+|.+.-.+-|. ...+-+ ....|.|++.|+-+|..++..+..++.-+.. .+.-.
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            46788888877765556666767777777664333 222222 2568889999999999999999888877664 22222


Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      ..- -...+|.++.+=.+.+        +....+|..|+.+|..|.. .|...-.-..-.++..|.+.|.++  .-.++.
T Consensus       945 t~~-~~Tlvp~lLsls~~~~--------n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk--KRlVR~ 1013 (1030)
T KOG1967|consen  945 TEH-LSTLVPYLLSLSSDND--------NNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK--KRLVRK 1013 (1030)
T ss_pred             hHH-HhHHHHHHHhcCCCCC--------cchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH--HHHHHH
Confidence            111 1346777777765531        0127899999999999988 666655555556888899999874  245666


Q ss_pred             HHHHHHH
Q 048113          195 KAIALLE  201 (339)
Q Consensus       195 ~a~~~L~  201 (339)
                      .|..+=.
T Consensus      1014 eAv~tR~ 1020 (1030)
T KOG1967|consen 1014 EAVDTRQ 1020 (1030)
T ss_pred             HHHHHhh
Confidence            6665433

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.43  E-value=1.6  Score=34.52  Aligned_cols=73  Identities=18%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|.+-|+++++.++..|+..|-.+..+.+......+.+.+.+..|++++. ..++.++.+...++..-+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            467788888888999999999999988888877778888888999999999987 5678899999999987765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.38  E-value=2  Score=33.53  Aligned_cols=73  Identities=21%  Similarity=0.385  Sum_probs=61.4

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc---CCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD---GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|-+-|+++++.++..|+.+|-.+..+.+..+...+.....+..|++++..   .++.++.++..++...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            3567788888899999999999999999888877677777777888889999875   478899999999988765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.29  E-value=1.9  Score=42.58  Aligned_cols=116  Identities=19%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE  117 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~  117 (339)
                      .|.+.-++....+.+..+|...+..|..+.. +......-+-.+....+..-+....+.+|..|+.+|..+-.++..-  
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            3445555555667788999999999999988 3333444444556666666666777889999999999987433221  


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV  171 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  171 (339)
                        +..++..++.+++++          .++++|..|+   .|++-++.....|+
T Consensus       161 --e~~v~n~l~~liqnD----------pS~EVRRaaL---snI~vdnsTlp~Iv  199 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQND----------PSDEVRRAAL---SNISVDNSTLPCIV  199 (892)
T ss_pred             --cccHHHHHHHHHhcC----------CcHHHHHHHH---HhhccCcccchhHH
Confidence              133678889999996          7899999876   55555555554443

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.91  E-value=13  Score=37.19  Aligned_cols=131  Identities=17%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             cCChHHHH-HHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHh-hcCCChhHHHHHHHHHHHHhcCccch
Q 048113           38 RGIIAPLI-SMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEV-LQCQSTTLIELTVAAMLILSSCLENK  115 (339)
Q Consensus        38 ~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~~  115 (339)
                      .+-..+++ +++.+.+|-+|.....++..--.+..       ..++|..|+.. .+..+.+++..|..+|.-....++  
T Consensus       517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--  587 (929)
T KOG2062|consen  517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--  587 (929)
T ss_pred             hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh--
Confidence            33444454 56777788888877655432222112       23567778877 566688999999999988776444  


Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEK  195 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  195 (339)
                            ...+..|++|...          .++.+|.-++-+|.--|...-++..+      ..|-.+..++  ..=++..
T Consensus       588 ------~~~~s~V~lLses----------~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~--~~fVRQg  643 (929)
T KOG2062|consen  588 ------EQLPSTVSLLSES----------YNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDP--VDFVRQG  643 (929)
T ss_pred             ------hhchHHHHHHhhh----------cChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcCh--HHHHHHH
Confidence                  2467778888663          79999999999999888766655544      2222333332  2345555


Q ss_pred             HHHHHH
Q 048113          196 AIALLE  201 (339)
Q Consensus       196 a~~~L~  201 (339)
                      |+-+++
T Consensus       644 AlIa~a  649 (929)
T KOG2062|consen  644 ALIALA  649 (929)
T ss_pred             HHHHHH
Confidence            665555

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.77  E-value=0.86  Score=45.98  Aligned_cols=136  Identities=8%  Similarity=0.083  Sum_probs=97.0

Q ss_pred             HHHHHhcCChHHHHHHhccC--------CHHHHHHHHHHHHHhccCCcchhhHHhhc--------CChHHHHHhhcC---
Q 048113           32 KHKLVERGIIAPLISMLCSQ--------DYEAIEAALLSLLSLACGSERNKIRIVKS--------GIVPVLLEVLQC---   92 (339)
Q Consensus        32 ~~~i~~~g~i~~Lv~lL~~~--------~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--------g~i~~Lv~lL~~---   92 (339)
                      ..-|.+.+++..++++....        ..+....|+.+|+.+.. -|..+..++.+        .|+..++..-.-   
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            34567788888888876643        45788899999999998 68877776543        245544443221   


Q ss_pred             -CChhHHHHHHHHHHHHhcCc-cchH-----------------------------------HHHhcchHHHHHHHhcCCC
Q 048113           93 -QSTTLIELTVAAMLILSSCL-ENKL-----------------------------------EIASSGAIQRLVEILNGDL  135 (339)
Q Consensus        93 -~~~~~~~~a~~~L~nLs~~~-~~~~-----------------------------------~i~~~g~i~~Lv~ll~~~~  135 (339)
                       .+++++..|+.++.|+.+.+ +++.                                   .+...++|..|+++|+...
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~  752 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN  752 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence             26899999999999998766 3432                                   2334678999999998632


Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcC
Q 048113          136 ADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG  174 (339)
Q Consensus       136 ~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g  174 (339)
                      +-.      .-..++..|+++|.-|+.+++.++.+.+.-
T Consensus       753 P~t------~aD~IRalAc~~L~GLaR~~tVrQIltKLp  785 (1516)
T KOG1832|consen  753 PPT------TADCIRALACRVLLGLARDDTVRQILTKLP  785 (1516)
T ss_pred             CCC------cHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence            110      234577889999999999999888776653

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=89.30  E-value=17  Score=33.17  Aligned_cols=157  Identities=13%  Similarity=0.069  Sum_probs=107.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH-H----HHHHHHhcC-ChHHHHHHhccC-----C--------HHHHHHHHHHHH
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSR-R----QKHKLVERG-IIAPLISMLCSQ-----D--------YEAIEAALLSLL   64 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~-~----~~~~i~~~g-~i~~Lv~lL~~~-----~--------~~~~~~A~~~L~   64 (339)
                      .+...|.++.+.....+++.|..+.. +    .++.+..-+ ..+.+.+++...     .        +.+|....+.+.
T Consensus        60 ~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~L  139 (330)
T PF11707_consen   60 LLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWL  139 (330)
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHH
Confidence            35566777788888899999999887 3    444444433 334455555321     1        278888887666


Q ss_pred             Hhcc-CCcchhhHHh-hcCChHHHHHhhcCCChhHHHHHHHHHHH-HhcCcc----chHHHHhcchHHHHHHHhcCCCCC
Q 048113           65 SLAC-GSERNKIRIV-KSGIVPVLLEVLQCQSTTLIELTVAAMLI-LSSCLE----NKLEIASSGAIQRLVEILNGDLAD  137 (339)
Q Consensus        65 ~Ls~-~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~----~~~~i~~~g~i~~Lv~ll~~~~~~  137 (339)
                      .+.. +++..+..+. +.+.+..+.+-|..+++++....+.+|.. +..++.    .|..+.....+..|..+...... 
T Consensus       140 sfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~-  218 (330)
T PF11707_consen  140 SFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGE-  218 (330)
T ss_pred             HHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCC-
Confidence            5555 3455566555 45779999999999999999999999985 444332    25566678899999998877210 


Q ss_pred             CCCccCCCCHHHHHHHHHHHHhhcCCCCCh
Q 048113          138 DDNSYGRISVQAKIDAIATLHNLSTCHQLI  167 (339)
Q Consensus       138 ~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~  167 (339)
                            .....+...+-..|..+|.++..-
T Consensus       219 ------~~~~~~~~~vh~fL~~lcT~p~~G  242 (330)
T PF11707_consen  219 ------DEKSSVADLVHEFLLALCTDPKHG  242 (330)
T ss_pred             ------cccchHHHHHHHHHHHHhcCCCcc
Confidence                  023488888999999998776543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=89.28  E-value=14  Score=32.57  Aligned_cols=220  Identities=17%  Similarity=0.116  Sum_probs=121.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHH
Q 048113           42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIA  119 (339)
Q Consensus        42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~  119 (339)
                      +.|-..|.++++..|..|+..|...-..-+...   ....-+..|+.++.+.  +......++..+..|.......... 
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence            345567888999999999998887666433222   2222356666665442  4445555566666665322211111 


Q ss_pred             hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH--hcCcHHHHHHHhhccccCchHHHHHH
Q 048113          120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV--SSGVTYCLLQLIHSSEKSSGLTEKAI  197 (339)
Q Consensus       120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~a~  197 (339)
                      ....+..+.+-.+-.         +.....|......|..|..+.  ...+.  ..+.+..+++.+.. ++++.-...+.
T Consensus        78 ~~~i~~~l~~~~~~q---------~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F  145 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQ---------SLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDG-EKDPRNLLLSF  145 (262)
T ss_pred             HHHHHHHHHHhCChh---------hhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHH
Confidence            111233333222111         135567788888888875442  22232  23577778887765 45677777777


Q ss_pred             HHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc---------C-Ch--HHHHHHHHHHHHhhccCchhHHHHHHhcCChH
Q 048113          198 ALLENIVSSSEDALQEIAATCGAIRALVETIEE---------G-SP--QCKEHAVAILLLICKSCRDKYRSSILKEGVMP  265 (339)
Q Consensus       198 ~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~---------~-~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~  265 (339)
                      ..+. .+...-+.       ....+.+.+.+..         + ++  -.++.-...|.+.-... +.     ...-++|
T Consensus       146 ~l~~-~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~-----fa~~~~p  211 (262)
T PF14500_consen  146 KLLK-VILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PL-----FAPFAFP  211 (262)
T ss_pred             HHHH-HHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-Hh-----hHHHHHH
Confidence            6666 33222111       2334444444421         1 21  22333334444332221 21     2335799


Q ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          266 GLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       266 ~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .|++-+.++++.+|.-+...|..+..
T Consensus       212 ~LleKL~s~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  212 LLLEKLDSTSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999888877655

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=89.28  E-value=20  Score=33.96  Aligned_cols=174  Identities=16%  Similarity=0.169  Sum_probs=99.5

Q ss_pred             CHHHHHHHHHHHHHhccCCc-chhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH
Q 048113           52 DYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE  129 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~  129 (339)
                      ..+-+..|+.-|..+.+... ..++... ...+..++..|.. .++..+..|++.|.....+.+.+-.=...-+|.++++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            44566777775555555332 2222221 2245567777877 5778899999999998876653321111225666666


Q ss_pred             HhcCCCCCCCCccCCCCHHHHH-HHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-C
Q 048113          130 ILNGDLADDDNSYGRISVQAKI-DAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-S  207 (339)
Q Consensus       130 ll~~~~~~~~~~~~~~~~~~~~-~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-~  207 (339)
                      .-.+           .+..+.. .+-.++.-++.......       |.-+..++...  +.+....++..+...+-. .
T Consensus       379 aa~d-----------s~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~  438 (516)
T KOG2956|consen  379 AAKD-----------SQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLTKLFERLS  438 (516)
T ss_pred             HHhC-----------CchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHHHHHhhcC
Confidence            6655           3444444 34444555555333221       22233333332  345555555555522211 1


Q ss_pred             HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      .+.-..++  .++.|.+++--.+.+..++..|+.||..+..
T Consensus       439 ~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  439 AEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            22222334  4788999999999999999999999988864

>PRK14707 hypothetical protein; Provisional

Probab=88.82  E-value=48  Score=37.68  Aligned_cols=284  Identities=12%  Similarity=0.052  Sum_probs=156.1

Q ss_pred             CCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH
Q 048113           12 GERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE   88 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~   88 (339)
                      ++..-+..+...-..++.+  -+..+-..|+...|-.+-+-+ ++.++..|...-..|+. ...-+..+-..|+-..|=.
T Consensus       177 ~~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~~~~~~q~va~~lN~  255 (2710)
T PRK14707        177 DNPDCQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLRNELKPQELGNALNA  255 (2710)
T ss_pred             CCchHHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHHHhCChHHHHHHHHH
Confidence            4555555555555556554  555554455555555555555 55555555444455555 3444444444444444444


Q ss_pred             hhcCCChhHHHHHHHHHH-HHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH-HHHHHHHHHhhcCCCCC
Q 048113           89 VLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA-KIDAIATLHNLSTCHQL  166 (339)
Q Consensus        89 lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~-~~~a~~~L~nLs~~~~~  166 (339)
                      +-+-++...-..++..+. .++.+..-+..+ +...+...+.-|..-          .+..+ +..|...-..|..+++.
T Consensus       256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKw----------pd~~vc~~Aa~~la~rl~~d~~l  324 (2710)
T PRK14707        256 LSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKW----------ADLPVCAEAAIALAERLADDPEL  324 (2710)
T ss_pred             HhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcC----------CCchHHHHHHHHHHHHHhccHhh
Confidence            444455545555555553 344333323333 222333444444331          34444 44444444466666666


Q ss_pred             hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHH
Q 048113          167 ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLL  245 (339)
Q Consensus       167 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~  245 (339)
                      ++.+- .-.+...++-|..++ +......|...|+.-+..+++-++.+-  ..++...++-|.. ++...-..++..|..
T Consensus       325 ~~~~~-~~~~~~~LNalsKWp-d~~~C~~Aa~~LA~rl~~d~~l~~~l~--~q~~a~~lNalsKWp~~~~c~~aa~~LA~  400 (2710)
T PRK14707        325 CKALN-ARGLSTALNALSKWP-DNPVCAAAVSALAERLVADPELRKDLE--PQGVSSVLNALSKWPDTPVCAAAASALAE  400 (2710)
T ss_pred             hhccc-hHHHHHHHHHhhcCC-CchhHHHHHHHHHHHhccCHhhhcccc--hhHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence            65443 334666777777775 455566666666667888888887774  3456666666655 455555556666654


Q ss_pred             hhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHH-HHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL-LLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      =...+ .+.++.+-..|+-..|-.+.+=++..+-..|+..| ..+++..+   -.+.+..-.+.+.+.-++
T Consensus       401 ~l~~d-~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~---l~~~~~p~~va~~LnalS  467 (2710)
T PRK14707        401 HVVDD-LELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTE---LCKALDPINVTQALDALS  467 (2710)
T ss_pred             HhccC-hhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHH---HHhhcChHHHHHHHHHhh
Confidence            44444 44777777677777676666666666655555554 66666554   344555555555555554

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.59  E-value=6.1  Score=32.08  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcC--ChHHHHHHhccC-CHHHHHHHHHHHHHhc---cCCcchhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERG--IIAPLISMLCSQ-DYEAIEAALLSLLSLA---CGSERNKI   75 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g--~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls---~~~~~~~~   75 (339)
                      ..+..+|.+++++.|-.++..++..... ..+.+.+.+  .+..++..|+.+ .+.+.+.++.+|..+.   .+.++...
T Consensus        28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R  107 (165)
T PF08167_consen   28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR  107 (165)
T ss_pred             HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            3567788899999999999999988888 477775533  778888899875 4456666666655544   44455433


Q ss_pred             HHhhc---CChHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 048113           76 RIVKS---GIVPVLLEVLQCQSTTLIELTVAAMLILSS  110 (339)
Q Consensus        76 ~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~  110 (339)
                      .+.-.   +.++.++.+++.  ......++.+|..+..
T Consensus       108 ei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  108 EIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             HHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            33322   334555555553  3456677777766653

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.55  E-value=4.1  Score=39.51  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=74.9

Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .|.+..+++-+.+++..++..++.+|..++..-..-....-.|.+++|.+-+-.           ..+.++..|+.+|+.
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~D-----------RE~~VR~eAv~~L~~  158 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFD-----------REKAVRREAVKVLCY  158 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHH
Confidence            467788888889999999999999999888654444455667888888886666           688899999999998


Q ss_pred             hcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHH
Q 048113          160 LSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA  198 (339)
Q Consensus       160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~  198 (339)
                      +-....+-+..    ....|+.+++++ ++.+++..|+-
T Consensus       159 ~Qe~~~neen~----~~n~l~~~vqnD-PS~EVRr~all  192 (885)
T COG5218         159 YQEMELNEENR----IVNLLKDIVQND-PSDEVRRLALL  192 (885)
T ss_pred             HHhccCChHHH----HHHHHHHHHhcC-cHHHHHHHHHH
Confidence            75433322221    233667777765 46777777654

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=88.31  E-value=3.4  Score=30.33  Aligned_cols=90  Identities=19%  Similarity=0.140  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHH-HHH--HHHHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113           15 ETQIQAANELGKL-SRR--QKHKLV-ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL   90 (339)
Q Consensus        15 ~~~~~a~~~L~~l-~~~--~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL   90 (339)
                      ++|+.|+..+-.- ..+  .-..+. ..+.+..|+.-.+..++.....++..+..+.. .|.....+.+.|+++.|-++=
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr   80 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR   80 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence            5677777665432 223  333333 56777778887777777788999999999999 688999999999999977776


Q ss_pred             cCCChhHHHHHHHHH
Q 048113           91 QCQSTTLIELTVAAM  105 (339)
Q Consensus        91 ~~~~~~~~~~a~~~L  105 (339)
                      ..-++..+...-.++
T Consensus        81 ~~~~~~~~~~id~il   95 (98)
T PF14726_consen   81 PNVEPNLQAEIDEIL   95 (98)
T ss_pred             hcCCHHHHHHHHHHH
Confidence            555666665554444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.24  E-value=1.8  Score=37.08  Aligned_cols=130  Identities=21%  Similarity=0.204  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHhhcCCCC---ChHHHHhcCcHHHHHHHhhccc-------------cCchHHHHHHHHHHHhhcCCHhh
Q 048113          147 VQAKIDAIATLHNLSTCHQ---LISPIVSSGVTYCLLQLIHSSE-------------KSSGLTEKAIALLENIVSSSEDA  210 (339)
Q Consensus       147 ~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~ll~~~~-------------~~~~~~~~a~~~L~n~l~~~~~~  210 (339)
                      ...|++|+-+|.|++..-+   .-+.| ..-+++-|++....+.             ..-.-++.|+.+|+ -++..+.|
T Consensus        80 ~~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLc-KLsV~e~N  157 (257)
T PF12031_consen   80 EQLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALC-KLSVIENN  157 (257)
T ss_pred             HHHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHH-HhheeccC
Confidence            3477788888888875322   11122 1112333343332210             01235788999999 88888877


Q ss_pred             hHHHHhh------CCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113          211 LQEIAAT------CGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA  278 (339)
Q Consensus       211 ~~~i~~~------~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  278 (339)
                      ..-+..+      ...+..|++++.. .++-.+|.|+..|.+||..+....|....+.+.|..|+..+.+.....
T Consensus       158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~  232 (257)
T PF12031_consen  158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNA  232 (257)
T ss_pred             cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            7666542      1234555666654 468889999999999999876655565667899999999998765444

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.15  E-value=4.4  Score=36.10  Aligned_cols=134  Identities=16%  Similarity=0.205  Sum_probs=87.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      .+..|.|.+|+....++..++.++......+..  +.+|-.+++-+++....+...|+.++.-+... -.+  .+.+  -
T Consensus        93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~-ln~--~i~~--~  167 (334)
T KOG2933|consen   93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSS-LNN--SIDQ--E  167 (334)
T ss_pred             HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHH--HHHH--H
Confidence            456778999999999999999999863333322  45666777778888889999999999888873 222  2222  3


Q ss_pred             hHHHHHhh-cCCC---hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           83 VPVLLEVL-QCQS---TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        83 i~~Lv~lL-~~~~---~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      ...++..| ...+   .-+++.|-.+|..+..+-.-.      -.++.|...+++           .++.++..++.++.
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~-----------~n~r~r~~a~~~~~  230 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQH-----------SNPRVRAKAALCFS  230 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhh-----------hchhhhhhhhcccc
Confidence            33344433 3322   236777777776665433211      146777777877           67778877775555


Q ss_pred             hh
Q 048113          159 NL  160 (339)
Q Consensus       159 nL  160 (339)
                      +.
T Consensus       231 ~~  232 (334)
T KOG2933|consen  231 RC  232 (334)
T ss_pred             cc
Confidence            54

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.06  E-value=20  Score=36.35  Aligned_cols=136  Identities=13%  Similarity=0.098  Sum_probs=86.5

Q ss_pred             HHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHH--HHHHHhhcC-
Q 048113          156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIR--ALVETIEEG-  231 (339)
Q Consensus       156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~--~Lv~lL~~~-  231 (339)
                      +|++... ++++++.+.+.|+...+.+.++.. ...++...+++.+. +++...+.+..... ...+.  ..-.++... 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~-n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~  570 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLG-NLAEVLELRELLMI-FEFIDFSVFKVLLNKWD  570 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHH-HHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcc
Confidence            8899987 679999999999999999999976 57899999999999 67665544433321 11111  222244333 


Q ss_pred             ChHHHHHHHHHHHHhhccCch--------hHHHHHHh--------------cCChHH-HHHhhh-cCCHHHHHHHHHHHH
Q 048113          232 SPQCKEHAVAILLLICKSCRD--------KYRSSILK--------------EGVMPG-LLQLSV-DGTWRAKNMARDLLL  287 (339)
Q Consensus       232 ~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~--------------~g~i~~-L~~ll~-~~~~~~~~~A~~~L~  287 (339)
                      +.+.-..++++|+.+..+++.        ...+.+.+              ...+.+ +.+++. +..+..+.-|++.++
T Consensus       571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~  650 (699)
T KOG3665|consen  571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK  650 (699)
T ss_pred             hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence            347777888888877764210        11111111              112222 444444 345667788888898


Q ss_pred             HHhccCC
Q 048113          288 LLRDCSS  294 (339)
Q Consensus       288 ~l~~~~~  294 (339)
                      ++.....
T Consensus       651 ~~~~~~~  657 (699)
T KOG3665|consen  651 NVLEQNK  657 (699)
T ss_pred             HHHHcCh
Confidence            8877543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=87.73  E-value=8.7  Score=37.40  Aligned_cols=86  Identities=17%  Similarity=0.307  Sum_probs=67.0

Q ss_pred             hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHH
Q 048113          203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA  282 (339)
Q Consensus       203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A  282 (339)
                      .+...|++ ..+++  |.+..+++.+.+++..++..++.+|+.+...-++  .....-.|.+..|.+.+.+..+.++..|
T Consensus        78 ~~~~dpeg-~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eA  152 (885)
T COG5218          78 DMPDDPEG-EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREA  152 (885)
T ss_pred             cCCCChhh-hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            34556666 45663  7889999999999999999999999998765333  1244556888889888999999999999


Q ss_pred             HHHHHHHhccC
Q 048113          283 RDLLLLLRDCS  293 (339)
Q Consensus       283 ~~~L~~l~~~~  293 (339)
                      +.+|..+-...
T Consensus       153 v~~L~~~Qe~~  163 (885)
T COG5218         153 VKVLCYYQEME  163 (885)
T ss_pred             HHHHHHHHhcc
Confidence            99998886544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=86.30  E-value=4.5  Score=32.06  Aligned_cols=67  Identities=13%  Similarity=0.115  Sum_probs=57.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACG   69 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~   69 (339)
                      ..|.+.|.++++.++..|+..|-.+.++    .+..+...+.+..|+.++.. .++.++...+..+...+..
T Consensus        40 ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          40 KAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            3577888999999999999999999987    56677778899999999887 6889999999998887763

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.25  E-value=24  Score=34.93  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=94.8

Q ss_pred             HHhccCCHHHHHHHHHHHHHhccCCcchhhHHh---hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcc
Q 048113           46 SMLCSQDYEAIEAALLSLLSLACGSERNKIRIV---KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSG  122 (339)
Q Consensus        46 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g  122 (339)
                      ..+..-..+.+-.|+.+|+.+..+...+-..+-   .+..+..++..+. .++..+..++++|.|+-.++.++..+... 
T Consensus       551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~-  628 (745)
T KOG0301|consen  551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR-  628 (745)
T ss_pred             HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence            344445677888899999999985443333222   1234555555555 45677888999999998887777766543 


Q ss_pred             hHHHHHHHhcC-CCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhc---cccCchHHHHH
Q 048113          123 AIQRLVEILNG-DLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHS---SEKSSGLTEKA  196 (339)
Q Consensus       123 ~i~~Lv~ll~~-~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a  196 (339)
                       .+.+...+.. .+        ..+..+.........|++.  ...+-+    .|..+.+...+..   ..++-+..-..
T Consensus       629 -~~~i~~~~~~~~s--------~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~  695 (745)
T KOG0301|consen  629 -LESILDPVIEASS--------LSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRL  695 (745)
T ss_pred             -HHHHhhhhhhhhc--------ccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHH
Confidence             3333332211 10        0334455544444445543  222211    3444444444433   21222345567


Q ss_pred             HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc
Q 048113          197 IALLENIVSSSEDALQEIAATCGAIRALVETIEE  230 (339)
Q Consensus       197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~  230 (339)
                      +.+|+ .+...+....++.+ .--+..+..-+++
T Consensus       696 l~Alg-tL~t~~~~~~~~A~-~~~v~sia~~~~~  727 (745)
T KOG0301|consen  696 LVALG-TLMTVDASVIQLAK-NRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHH-hhccccHHHHHHHH-hcCHHHHHHHHHH
Confidence            78888 56666666667766 4567777777765

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=85.74  E-value=33  Score=32.58  Aligned_cols=129  Identities=14%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             HHHHHH-HHHHhhcCCHhh-hHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCchhHHHHHHh--cCChHHH
Q 048113          193 TEKAIA-LLENIVSSSEDA-LQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVMPGL  267 (339)
Q Consensus       193 ~~~a~~-~L~n~l~~~~~~-~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i~~L  267 (339)
                      +..|+. +.. .++..... ..+..  ...+..+++.|.+ .++.++..|+.+|..+|...+.    .+.+  +=++..+
T Consensus       304 ~k~alsel~~-m~~e~sfsvWeq~f--~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~----~l~DstE~ai~K~  376 (516)
T KOG2956|consen  304 RKEALSELPK-MLCEGSFSVWEQHF--AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA----RLFDSTEIAICKV  376 (516)
T ss_pred             HHHHHHHHHH-HHHccchhHHHHHH--HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH----hhhchHHHHHHHH
Confidence            445554 333 44444322 22222  2355677788877 5788999999999999977433    3332  2355555


Q ss_pred             HHhhhcCCHHHH-HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHhc
Q 048113          268 LQLSVDGTWRAK-NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKLS  337 (339)
Q Consensus       268 ~~ll~~~~~~~~-~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~~  337 (339)
                      ++-..+..+.+- ..+-.+++.++.+.++..         +..|...+..++++..-.+-++++.++++|.
T Consensus       377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~  438 (516)
T KOG2956|consen  377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---------IVNISPLILTADEPRAVAVIKMLTKLFERLS  438 (516)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHhhCchhH---------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence            555556666554 444457888888766421         2233334434566666678888888888764

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=85.73  E-value=4.9  Score=39.81  Aligned_cols=109  Identities=14%  Similarity=0.030  Sum_probs=78.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHH-HHHh------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-QKH-KLVE------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK   74 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~-~i~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~   74 (339)
                      +.++.+|+++....|+.-+++.+|+..+ .++ .+.+      ...+..|++-+.+..|-+|..|++.+..++.-+..  
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk--  379 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK--  379 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc--
Confidence            4678899999999999999999999876 222 2333      33455556666777999999999988777653211  


Q ss_pred             hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc
Q 048113           75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE  113 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  113 (339)
                      ..=..+.++...++.++..+.-+|.+|...+..|....+
T Consensus       380 ~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP  418 (1128)
T COG5098         380 TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP  418 (1128)
T ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            111223456678888888888899999998888765443

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=85.68  E-value=9  Score=28.12  Aligned_cols=95  Identities=16%  Similarity=0.090  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh
Q 048113          191 GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL  270 (339)
Q Consensus       191 ~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l  270 (339)
                      +++..|+.-+-.-+..+--....+++..+.+..|++-+..+....++.++..+..+...+.  ..+.+.+-|++.-|.++
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--a~~~l~~iG~~~fL~kl   79 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--AAQILRDIGAVRFLSKL   79 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--HHHHHHHccHHHHHHHH
Confidence            3455555333223333333333444445677788887877777788999999999987742  45777789999998888


Q ss_pred             hhcCCHHHHHHHHHHHH
Q 048113          271 SVDGTWRAKNMARDLLL  287 (339)
Q Consensus       271 l~~~~~~~~~~A~~~L~  287 (339)
                      -...++..+...-.++.
T Consensus        80 r~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   80 RPNVEPNLQAEIDEILD   96 (98)
T ss_pred             HhcCCHHHHHHHHHHHh
Confidence            77777877766655554

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.18  E-value=26  Score=36.90  Aligned_cols=226  Identities=15%  Similarity=0.143  Sum_probs=133.7

Q ss_pred             HHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCC--C
Q 048113           60 LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLA--D  137 (339)
Q Consensus        60 ~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~  137 (339)
                      ..+|..+-+++.+|...+.++.++..++.++-+  ++-|.-.++++..|...++.+.   +..-+-.++..|++...  .
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv---hhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV---HHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHhcceecc
Confidence            456777777788999999999999888888743  4456666666666665444321   12234566666665200  0


Q ss_pred             CCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcccc------CchH------HH----------
Q 048113          138 DDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEK------SSGL------TE----------  194 (339)
Q Consensus       138 ~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~------~~~~------~~----------  194 (339)
                      .-+ ...-........+.++|..-. +...+..+.++|++..|...|..-..      ..+.      ..          
T Consensus       738 sge-qyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav  816 (2799)
T KOG1788|consen  738 SGE-QYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV  816 (2799)
T ss_pred             chh-HHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence            000 000012344556777787754 55667778888777777666532100      0000      00          


Q ss_pred             -----------------------------------HHHHHHHH----------------------hhc-----------C
Q 048113          195 -----------------------------------KAIALLEN----------------------IVS-----------S  206 (339)
Q Consensus       195 -----------------------------------~a~~~L~n----------------------~l~-----------~  206 (339)
                                                         +.+..|-.                      .+.           .
T Consensus       817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq  896 (2799)
T KOG1788|consen  817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ  896 (2799)
T ss_pred             hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence                                               00000000                      000           1


Q ss_pred             CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhh---hcCCHHHHHHHH
Q 048113          207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLS---VDGTWRAKNMAR  283 (339)
Q Consensus       207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~A~  283 (339)
                      ....++++.+ +|++..|++.+-...++.|-.-+..+..++..++. +.+.....|.+..|.+++   .+++.+.-..|.
T Consensus       897 fnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspf-naelltS~gcvellleIiypflsgsspfLshal  974 (2799)
T KOG1788|consen  897 FNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPF-NAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL  974 (2799)
T ss_pred             cCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCC-chhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence            1223455555 77888888877777888888888888888877654 555556689999988875   456777777788


Q ss_pred             HHHHHHhccC
Q 048113          284 DLLLLLRDCS  293 (339)
Q Consensus       284 ~~L~~l~~~~  293 (339)
                      .++.+|.-.+
T Consensus       975 kIvemLgayr  984 (2799)
T KOG1788|consen  975 KIVEMLGAYR  984 (2799)
T ss_pred             HHHHHHhhcc
Confidence            8877776543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=85.12  E-value=4.1  Score=31.79  Aligned_cols=73  Identities=19%  Similarity=0.259  Sum_probs=59.7

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC--HHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT--WRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~A~~~L~~l~~  291 (339)
                      .++..|-+-|+++++.++..|+..|-.+..+++..+...+...+.+..|..++....  +.++.+...++..-+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            356677778888999999999999999988877778888888899999999987643  3389999988877654

Unpublished observations. Domain of unknown function.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.11  E-value=2.9  Score=32.89  Aligned_cols=73  Identities=22%  Similarity=0.341  Sum_probs=59.9

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHH---HHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWR---AKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~---~~~~A~~~L~~l~~  291 (339)
                      .++..|-+-|+++++.++..|+..|-.+..+.++.++..+.....+..|.+++.+. ...   +++++..++...+.
T Consensus        42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            35677888888999999999999999998887777888888888999999987754 333   89999998877765

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.10  E-value=16  Score=29.56  Aligned_cols=115  Identities=11%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh--cCChHHHHHhhhcCC-HHHHHHHHHHHHHHhcc-CC
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK--EGVMPGLLQLSVDGT-WRAKNMARDLLLLLRDC-SS  294 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~-~~~~~~A~~~L~~l~~~-~~  294 (339)
                      ..+..+..+|+++++..+..++..+...+..++   .+.+.+  .-.+..|+++++..+ +.+++.|+.+|..|... ..
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            456778889999888888888888888886642   245544  347777888887654 55678888888666442 22


Q ss_pred             CcchhhhhhhHHHHHHHHHHH--hcCcccchHHHHHHHHHHHHh
Q 048113          295 FGSRSKQLKNELVEQIMQEID--AEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       295 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      +..-..++....+..+++.+.  .++....+.+...|..++..-
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHH  145 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC
Confidence            211122344555666666664  333567778888888888754

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=85.09  E-value=24  Score=30.43  Aligned_cols=144  Identities=16%  Similarity=0.088  Sum_probs=85.6

Q ss_pred             HHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113           42 APLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS  120 (339)
Q Consensus        42 ~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  120 (339)
                      +.|+. .-+..+++.+...+.+|..++.++..+...     ++..|..+.+.+..+.+..+.+.+..+...++-..    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            44444 445568999999999999999953122222     34556666667766676677777777776444211    


Q ss_pred             cchHHHHHHH--hcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHh-hccccCchHHHHHH
Q 048113          121 SGAIQRLVEI--LNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLI-HSSEKSSGLTEKAI  197 (339)
Q Consensus       121 ~g~i~~Lv~l--l~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~~~a~  197 (339)
                       +.++.++..  ++....   ...++...+.......++..+|...++    .....++.+..++ ++.  ++..+..++
T Consensus        74 -~~L~~~L~~~~~r~~~~---~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~--~~~~~alal  143 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSS---FSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC--DEVAQALAL  143 (234)
T ss_pred             -HHHHHHHHHHHhhcccc---cCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc--cHHHHHHHH
Confidence             445555544  110000   000113455556666788888874443    2224677788888 443  466777888


Q ss_pred             HHHHHhhc
Q 048113          198 ALLENIVS  205 (339)
Q Consensus       198 ~~L~n~l~  205 (339)
                      .+|. .++
T Consensus       144 e~l~-~Lc  150 (234)
T PF12530_consen  144 EALA-PLC  150 (234)
T ss_pred             HHHH-HHH
Confidence            8888 555

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=84.74  E-value=39  Score=33.92  Aligned_cols=131  Identities=13%  Similarity=0.027  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113           12 GERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL   90 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL   90 (339)
                      +|++.+..|--+|..+..-.-..  -..-.|.|+..+. +++|.+|.+|.-.|+.++.-.......     .-..|.+-|
T Consensus       908 sd~~lq~aA~l~L~klMClS~~f--c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL  980 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEF--CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL  980 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh
Confidence            68899999988888876431111  1234677887765 789999999988888776521111111     234577777


Q ss_pred             cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113           91 QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH  164 (339)
Q Consensus        91 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~  164 (339)
                      ...+..++..+..++.+|......|.    .|-.+.+...|.+           ++..+..-|-..+..++..+
T Consensus       981 ~De~~~V~rtclmti~fLilagq~KV----KGqlg~ma~~L~d-----------eda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         981 GDEDADVRRTCLMTIHFLILAGQLKV----KGQLGKMALLLTD-----------EDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             cchhhHHHHHHHHHHHHHHHccceee----ccchhhhHhhccC-----------CcchHHHHHHHHHHHHHhcc
Confidence            77888899999999999876443322    5667888888888           67777777777777776543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.58  E-value=5.8  Score=39.57  Aligned_cols=137  Identities=18%  Similarity=0.113  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHHHHHH-HHH-----------HHHhcCChHHHHHHhc----cCCHHHHHHHHHHHHHhccCCcchhhH
Q 048113           13 ERETQIQAANELGKLSRR-QKH-----------KLVERGIIAPLISMLC----SQDYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~-~~~-----------~i~~~g~i~~Lv~lL~----~~~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      ++..+..|+-++..+... +..           .......++.+...+.    ..+.+.+..++++|+|+...       
T Consensus       448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------  520 (618)
T PF01347_consen  448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------  520 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------
T ss_pred             ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------
Confidence            456677777777777766 222           1223456777776665    34678889999999999762       


Q ss_pred             HhhcCChHHHHHhhcCC---ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           77 IVKSGIVPVLLEVLQCQ---STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                          ..++.|.+.+...   +..+|..|+++|..++...+.       .+.+.+..++.+..         .+.++|..|
T Consensus       521 ----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~---------e~~EvRiaA  580 (618)
T PF01347_consen  521 ----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTT---------EDPEVRIAA  580 (618)
T ss_dssp             ----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TT---------S-HHHHHHH
T ss_pred             ----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCC---------CChhHHHHH
Confidence                3567788877766   567888999998877543332       24778888887754         788999999


Q ss_pred             HHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc
Q 048113          154 IATLHNLSTCHQLISPIVSSGVTYCLLQLIHS  185 (339)
Q Consensus       154 ~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~  185 (339)
                      ..+|...  +|.       ...+..+...+..
T Consensus       581 ~~~lm~~--~P~-------~~~l~~i~~~l~~  603 (618)
T PF01347_consen  581 YLILMRC--NPS-------PSVLQRIAQSLWN  603 (618)
T ss_dssp             HHHHHHT------------HHHHHHHHHHHTT
T ss_pred             HHHHHhc--CCC-------HHHHHHHHHHHhh
Confidence            8777662  222       1235556666654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=83.19  E-value=7  Score=29.97  Aligned_cols=32  Identities=13%  Similarity=0.031  Sum_probs=28.1

Q ss_pred             ChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          263 VMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       263 ~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      ++..|.+-+.+.++.++.+|+.+|.+++..+.
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~   70 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN   70 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence            57788888999999999999999999988664

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=83.03  E-value=6.1  Score=28.64  Aligned_cols=83  Identities=13%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhc
Q 048113           42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASS  121 (339)
Q Consensus        42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~  121 (339)
                      ...+..+.++.+.+|..|+..|+.|... .. ....-..+++..+...|.++++-+-.+|...|..|+...+..      
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~-~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------   77 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIES-KS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------   77 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHc-CC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------
Confidence            4456778888889999999999999994 33 222223466777888888888889999999999988654432      


Q ss_pred             chHHHHHHHhcC
Q 048113          122 GAIQRLVEILNG  133 (339)
Q Consensus       122 g~i~~Lv~ll~~  133 (339)
                       +++.|++...+
T Consensus        78 -vl~~L~~~y~~   88 (92)
T PF10363_consen   78 -VLPILLDEYAD   88 (92)
T ss_pred             -HHHHHHHHHhC
Confidence             46666665544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.89  E-value=9.2  Score=29.75  Aligned_cols=67  Identities=16%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc---CCHHHHHHHHHHHHHhccC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS---QDYEAIEAALLSLLSLACG   69 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~~Ls~~   69 (339)
                      ..|-..|+++++.++..|+..|-.+..+    .+..+.....+..|+.++..   .++.++..++..+...+..
T Consensus        40 raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          40 RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999987    55566666777788888865   4789999999999887764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=82.82  E-value=9.1  Score=30.12  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc------CCHHHHHHHHHHHHHhcc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS------QDYEAIEAALLSLLSLAC   68 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls~   68 (339)
                      +.+...|.++++.++..|+..|-.+.++    .+..+...+.+..|+++++.      .++.++...+..+..-+.
T Consensus        41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          41 RLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3577888999999999999999998887    66677778888899998853      467899988888876665

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=82.76  E-value=58  Score=32.99  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=89.0

Q ss_pred             cCChHHHHHHhccC--------CHHHHHHHHHHHHHhcc--CCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHH
Q 048113           38 RGIIAPLISMLCSQ--------DYEAIEAALLSLLSLAC--GSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLI  107 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~--------~~~~~~~A~~~L~~Ls~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n  107 (339)
                      .|+++-++..|...        ++.-.+.|++.+.++..  ..+.--..+.+.=.++.+++.++++..-++..||..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            67888888888321        23334556666666554  223334445555567778888888888899999999988


Q ss_pred             HhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc--CcHHHHHHHhhc
Q 048113          108 LSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS--GVTYCLLQLIHS  185 (339)
Q Consensus       108 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~ll~~  185 (339)
                      ++.+-  +....-..+.+.....+++           ++.+++..|+.||.-+-.+.+....+.+.  +.++.|+.+-..
T Consensus       487 ~eeDf--kd~~ill~aye~t~ncl~n-----------n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~  553 (970)
T COG5656         487 IEEDF--KDNGILLEAYENTHNCLKN-----------NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT  553 (970)
T ss_pred             HHHhc--ccchHHHHHHHHHHHHHhc-----------CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence            85422  2222334456666777777           78899999999999998877666666554  455555555444

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.73  E-value=21  Score=37.56  Aligned_cols=247  Identities=13%  Similarity=0.030  Sum_probs=142.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHH-H--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CcchhhHHhhcCChH
Q 048113           10 LNGERETQIQAANELGKLSR-R--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG--SERNKIRIVKSGIVP   84 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~-~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~~i~~~g~i~   84 (339)
                      ++.+.+.+...+..+..+-. +  |.....+.-.+|.++.-+......+|..-+..|..-...  .-..++.       -
T Consensus       477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqEL-------l  549 (2799)
T KOG1788|consen  477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQEL-------L  549 (2799)
T ss_pred             HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHHH-------H
Confidence            46677777777777766543 3  666667788888888777766555665555544321110  0111221       1


Q ss_pred             HHHHhhcCC-ChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCC-----CCCC-------C-Cc--------
Q 048113           85 VLLEVLQCQ-STTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGD-----LADD-------D-NS--------  141 (339)
Q Consensus        85 ~Lv~lL~~~-~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~-------~-~~--------  141 (339)
                      .|+-+|+.+ +..+..-.+.....|.. +...|..+.+-|.++.|...++.+     .+.+       + +.        
T Consensus       550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~  629 (2799)
T KOG1788|consen  550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQH  629 (2799)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhc
Confidence            344556655 33333333444455554 445688888999999998877652     1111       1 10        


Q ss_pred             -------------c--CCCCHHHHH------HHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113          142 -------------Y--GRISVQAKI------DAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       142 -------------~--~~~~~~~~~------~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                                   +  +++..++..      -.-.+|..+.+ +.+|.+.+.++.++..++.++-+    ++-+...+.+
T Consensus       630 ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflin----dehRSslLri  705 (2799)
T KOG1788|consen  630 LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIN----DEHRSSLLRI  705 (2799)
T ss_pred             cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeec----hHHHHHHHHH
Confidence                         1  122212211      12344555555 66888888888878877777754    3445556666


Q ss_pred             HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCCh------------HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH
Q 048113          200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSP------------QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL  267 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L  267 (339)
                      +..++...+..    +. ...+..+|+.|+++-.            .......+++|.+...++. .+..+.++++...|
T Consensus       706 vscLitvdpkq----vh-hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngs-aqrvFgeatGFslL  779 (2799)
T KOG1788|consen  706 VSCLITVDPKQ----VH-HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGS-AQRVFGEATGFSLL  779 (2799)
T ss_pred             HHHHhccCccc----cc-HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCch-heeehhccccHHHH
Confidence            66444444431    11 2457778888887421            2334556788888755544 67778889999888


Q ss_pred             HHhhhc
Q 048113          268 LQLSVD  273 (339)
Q Consensus       268 ~~ll~~  273 (339)
                      ...++.
T Consensus       780 lttLht  785 (2799)
T KOG1788|consen  780 LTTLHT  785 (2799)
T ss_pred             HHHHHH
Confidence            877653

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=82.66  E-value=8.2  Score=30.49  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhcc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLAC   68 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~   68 (339)
                      ..|...|.++++.++..|+..|--+.++    ....+.+.+.+..|+.+++ ..++.++...+..+..-+.
T Consensus        44 ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          44 RALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            3577888999999999999999988887    5566777889999999886 4577899999888877765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=82.61  E-value=55  Score=32.69  Aligned_cols=249  Identities=12%  Similarity=0.112  Sum_probs=147.2

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC--HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113            9 LLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQD--YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL   86 (339)
Q Consensus         9 L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L   86 (339)
                      |...+.+++.+=...|..........++..-+++.|+..+..++  .++.......-.-+..  ++     .+.+.+|.|
T Consensus       263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~--~e-----yq~~i~p~l  335 (690)
T KOG1243|consen  263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE--EE-----YQVRIIPVL  335 (690)
T ss_pred             cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc--cc-----cccchhhhH
Confidence            34455666655555555533334455566677778877776654  2333333333333333  12     677899999


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CC
Q 048113           87 LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQ  165 (339)
Q Consensus        87 v~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~  165 (339)
                      ++++.+.+..+|..-+.-+-+...  .-...+.+....|.+..-+.+           .++.+++.++..+..|+.. .+
T Consensus       336 ~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~D-----------Tn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  336 LKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFLD-----------TNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             HHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhccc-----------CCHHHHHHHHHHHHHHHhhhch
Confidence            999999998888755444433332  223445567788888888878           7999999999998888652 22


Q ss_pred             ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113          166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL  245 (339)
Q Consensus       166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  245 (339)
                      +   -.....+..+ .-++. +.+..++-+..-+|+ -...+-.   ..+...-.+.+..+-++++-...+..+..+++.
T Consensus       403 ~---~Ln~Ellr~~-ar~q~-d~~~~irtntticlg-ki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~a  473 (690)
T KOG1243|consen  403 R---NLNGELLRYL-ARLQP-DEHGGIRTNTTICLG-KIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAA  473 (690)
T ss_pred             h---hhcHHHHHHH-HhhCc-cccCcccccceeeec-ccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence            1   1111112222 22232 235666666655555 3333211   111112223444445666666677888888877


Q ss_pred             hhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113          246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      -+.....    .-+...++|.++.+.-+.+..++..|-..+..+-
T Consensus       474 t~~~~~~----~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  474 TQEYFDQ----SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             cccccch----hhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            7655322    2245568899988888888888888777665543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=82.39  E-value=42  Score=31.20  Aligned_cols=173  Identities=18%  Similarity=0.089  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHh-----h----------------------c-CCChhHHHHHHH
Q 048113           52 DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEV-----L----------------------Q-CQSTTLIELTVA  103 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~l-----L----------------------~-~~~~~~~~~a~~  103 (339)
                      ...+...|+.-|...+. .+..+..+...+.++.++.-     +                      + ++...-+..|+.
T Consensus       155 ~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~d  233 (370)
T PF08506_consen  155 YDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACD  233 (370)
T ss_dssp             GHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHH
Confidence            34566778888887776 44444333222333333321     1                      1 111335778888


Q ss_pred             HHHHHhcCccch-HHHHhcchHHHHHHHh-cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-------------H
Q 048113          104 AMLILSSCLENK-LEIASSGAIQRLVEIL-NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-------------S  168 (339)
Q Consensus       104 ~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll-~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-------------~  168 (339)
                      .+..|+...+.. ..+ -.+.+..++.-. .++.         .+...+..|+..+..|+......             .
T Consensus       234 fl~~L~~~~~~~v~~i-~~~~i~~~l~~y~~~~~---------~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  234 FLRSLCKKFEKQVTSI-LMQYIQQLLQQYASNPS---------NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-TT---------T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhCCc---------ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            888887532211 111 112233332211 2322         67788888999999997644321             1


Q ss_pred             HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113          169 PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL  243 (339)
Q Consensus       169 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  243 (339)
                      .+...-++|.|.   .+.+..+-++..|+..+. ..... -.+..+.   +.+|.+++.|.+++.-+...|+.++
T Consensus       304 ~Ff~~~v~peL~---~~~~~~piLka~aik~~~-~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ---PDVNSHPILKADAIKFLY-TFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH----SS-S-HHHHHHHHHHHH-HHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc---ccCCCCcchHHHHHHHHH-HHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence            222222233332   122224556677777766 33322 2223333   5899999999999988888888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=81.98  E-value=2.4  Score=30.77  Aligned_cols=67  Identities=18%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE   71 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~   71 (339)
                      .+..|.++.+.+|..++..|+++... ........+++..+...|+++++-+=-+|.+.|..|+...+
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            45667788899999999999999987 41333346777778889999999999999999999998433

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=81.44  E-value=11  Score=37.43  Aligned_cols=133  Identities=14%  Similarity=0.225  Sum_probs=87.5

Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      ..++|.|.+.++..+..+++.++..+...+..-+  ...++.-.+|++-.+...+          .+..++.+++.++..
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~t----------t~~~vkvn~L~c~~~  455 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKT----------TNLYVKVNVLPCLAG  455 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcc----------cchHHHHHHHHHHHH
Confidence            3466777777788888899999998888875433  3334555688888875443          688999999999998


Q ss_pred             hcCCCCChHHHHhcCcHHHHHHHhhcc-ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113          160 LSTCHQLISPIVSSGVTYCLLQLIHSS-EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS  232 (339)
Q Consensus       160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~  232 (339)
                      +.      +.+-..-+++.+..+++.. ..++.+...++.+..+.....+.+ ..+.- ..++|.++-+...+.
T Consensus       456 l~------q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~-~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  456 LI------QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMA-ENVLPLLIPLSVAPS  521 (700)
T ss_pred             HH------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeeh-hhhhhhhhhhhhccc
Confidence            87      2222223444444444332 235778888888888444444444 23332 578888888877655

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=81.31  E-value=20  Score=34.97  Aligned_cols=121  Identities=13%  Similarity=0.168  Sum_probs=71.2

Q ss_pred             cCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccch
Q 048113           38 RGIIAPLISM-LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ-STTLIELTVAAMLILSSCLENK  115 (339)
Q Consensus        38 ~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~  115 (339)
                      .|+|..|+.. .++.+.++++.|.-+|+-.|+.++         ..++..+.+|..+ ++-+|...+.+|.-.+.....+
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~  620 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK  620 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence            5667777665 566677888888888877777422         3445566666544 5667776666666555444333


Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhcc
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~  186 (339)
                      .      ++..|-.+...           .+.-+|..|+-++.-+..  +++.-...  .+++..+.+++.+.
T Consensus       621 ~------a~diL~~L~~D-----------~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~K  674 (926)
T COG5116         621 V------ATDILEALMYD-----------TNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDK  674 (926)
T ss_pred             H------HHHHHHHHhhC-----------cHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhh
Confidence            3      34444445555           577788888888776643  22221111  24455666666553

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=80.84  E-value=31  Score=28.55  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHH--------HHHHHHhcC------ChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-
Q 048113           16 TQIQAANELGKLSRR--------QKHKLVERG------IIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-   79 (339)
Q Consensus        16 ~~~~a~~~L~~l~~~--------~~~~i~~~g------~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-   79 (339)
                      +|..|+.+|..+++.        ++..+.-.+      .-+.|+. ++.++++.+|..|+.++..+-.+.... -...+ 
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~-L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF-LAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH-HHHHHh
Confidence            578888888888875        555554333      5555655 567789999999999999888753221 11111 


Q ss_pred             cC----C---------------hHHHHHhhcCC-ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHH----HHhcCCC
Q 048113           80 SG----I---------------VPVLLEVLQCQ-STTLIELTVAAMLILSSCLENKLEIASSGAIQRLV----EILNGDL  135 (339)
Q Consensus        80 ~g----~---------------i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv----~ll~~~~  135 (339)
                      ..    .               -..|+..|+.+ +..+....+.++..|....+....  ..|.++.++    .++.+  
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~--  156 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRH--  156 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhc--
Confidence            11    1               13444555554 566777888888888876665321  245444444    45556  


Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113          136 ADDDNSYGRISVQAKIDAIATLHNLSTC  163 (339)
Q Consensus       136 ~~~~~~~~~~~~~~~~~a~~~L~nLs~~  163 (339)
                               .|++++..++.++..+...
T Consensus       157 ---------~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  157 ---------RDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             ---------CCCcHHHHHHHHHHHHHcC
Confidence                     7888999998888887653

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=80.19  E-value=32  Score=28.42  Aligned_cols=131  Identities=19%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhccC-Ccch----hhHHh------hcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHH--h
Q 048113           55 AIEAALLSLLSLACG-SERN----KIRIV------KSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIA--S  120 (339)
Q Consensus        55 ~~~~A~~~L~~Ls~~-~~~~----~~~i~------~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~  120 (339)
                      +|..|+.+|..+++. ++..    +..+.      ....-+.|+. ++.++++.+|..|+.++..+....  +..+.  +
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae   79 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAE   79 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHH
Confidence            577788888888874 1111    11111      1223444444 556678899999999998876532  21111  0


Q ss_pred             --------------------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHH
Q 048113          121 --------------------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCL  179 (339)
Q Consensus       121 --------------------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L  179 (339)
                                          ......|+..++.+          .+..+....+++|..|... +-.|-   +.|.++.+
T Consensus        80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----------~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~  146 (182)
T PF13251_consen   80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----------KSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEV  146 (182)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----------cccHHHHHHHHHHHHHHccCChhhc---CHhHHHHH
Confidence                                22345677777774          5788888999999999774 33332   23555554


Q ss_pred             H----HHhhccccCchHHHHHHHHHHH
Q 048113          180 L----QLIHSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       180 v----~ll~~~~~~~~~~~~a~~~L~n  202 (339)
                      +    .++.+  .+.+++..++.+++.
T Consensus       147 v~~v~~~l~~--~d~~v~v~~l~~~~~  171 (182)
T PF13251_consen  147 VTQVRPLLRH--RDPNVRVAALSCLGA  171 (182)
T ss_pred             HHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence            4    44444  357888888888883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-31
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-31
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-30
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-30
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-24
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-23
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-11
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-24
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-15
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-08
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-23
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-21
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-13
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-22
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-17
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-17
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-15
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-13
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-21
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-18
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-08
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-11
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  118 bits (298), Expect = 1e-31
 Identities = 46/249 (18%), Positives = 115/249 (46%), Gaps = 19/249 (7%)

Query: 5   LMDNLLNGERETQIQAANELGKL---SRRQKHKLVERGIIAPLISMLCSQDYEAIEAALL 61
           +   L + + + Q+ A  +  ++      Q   +++ G +  L+ +L S + + ++ AL 
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76

Query: 62  SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIAS 120
           +L ++A G       ++ +G +P L+++L   +  +++  + A+  ++S   E    +  
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCL 179
           +GA+  LV++L+             + Q   +A+  L N+++  ++ I  ++ +G    L
Sbjct: 137 AGALPALVQLLSSP-----------NEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 180 LQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA 239
           +QL+ S   +  + ++A+  L NI S   +  Q +    GA+  L +     + + ++ A
Sbjct: 186 VQLLSS--PNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEA 242

Query: 240 VAILLLICK 248
              L  +  
Sbjct: 243 QEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  107 bits (270), Expect = 1e-27
 Identities = 51/263 (19%), Positives = 112/263 (42%), Gaps = 17/263 (6%)

Query: 29  RRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88
           R   H       +  +   L S D +   +A      +          ++ +G +P L++
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61

Query: 89  VLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISV 147
           +L   +  +++  + A+  I S   E    +  +GA+  LV++L+             + 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----------NE 110

Query: 148 QAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206
           Q   +A+  L N+++  ++ I  ++ +G    L+QL+ S      + ++A+  L NI S 
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASG 168

Query: 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG 266
             + +Q +    GA+ ALV+ +   + Q  + A+  L  I     ++ + ++ + G +  
Sbjct: 169 GNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEK 226

Query: 267 LLQLSVDGTWRAKNMARDLLLLL 289
           L QL      + +  A++ L  L
Sbjct: 227 LEQLQSHENEKIQKEAQEALEKL 249

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  123 bits (311), Expect = 2e-31
 Identities = 59/300 (19%), Positives = 111/300 (37%), Gaps = 21/300 (7%)

Query: 13  ERETQIQAANELGKLSRRQKHK--LVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGS 70
           + ET    A  L  LS  ++    + + G I  L+ ML S     +  A+ +L +L    
Sbjct: 70  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 71  ERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVE 129
           E  K+ +  +G +  ++ +L   +   + +T   + IL+    E+KL I +SG  Q LV 
Sbjct: 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 130 ILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS 189
           I+         +Y    +         L  LS C      IV +G    L   +     S
Sbjct: 190 IM--------RTYTYEKLLW--TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--S 237

Query: 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249
             L +  +  L N+  ++           G +  LV+ +          A  IL  +   
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLT-C 292

Query: 250 CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQ 309
              K +  + + G +  L++  +    R   +    +  LR  +S    ++  +N +   
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDRED-ITEPAICALRHLTSRHQEAEMAQNAVRLH 351

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  119 bits (299), Expect = 5e-30
 Identities = 49/305 (16%), Positives = 104/305 (34%), Gaps = 20/305 (6%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAA 59
           + ++  L     +      + L  L+      K  ++  G    L++++ +  YE +   
Sbjct: 143 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 202

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
              +L +      NK  IV++G +  L   L   S  L++  +  +  LS     +    
Sbjct: 203 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EG 260

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYC 178
             G +  LV++L  D            +     A   L NL+  + +    +   G    
Sbjct: 261 MEGLLGTLVQLLGSD-----------DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDA--LQEIAATCGAIRALVETIEEGSPQCK 236
           L++ +  +     +TE AI  L ++ S  ++A   Q        +  +V+ +   S    
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369

Query: 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFG 296
             A   L+    +      + + ++G +P L+QL V      +          +      
Sbjct: 370 IKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428

Query: 297 SRSKQ 301
                
Sbjct: 429 MEEIV 433

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  109 bits (274), Expect = 1e-26
 Identities = 43/285 (15%), Positives = 108/285 (37%), Gaps = 23/285 (8%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHK---LVERGIIAPLISMLCSQDYEAIEAA 59
             L   L + ++    +AA  + +LS+++  +   +    +++ ++  + + +       
Sbjct: 17  PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEI 118
               L          + I KSG +P L+++L     +++   +  +  L    E  K+ +
Sbjct: 77  TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS-TCHQLISPIVSSGVTY 177
             +G +Q++V +LN             +V+        L  L+    +    I++SG   
Sbjct: 137 RLAGGLQKMVALLNKT-----------NVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185

Query: 178 CLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237
            L+ ++ +      L      +L+ +  S   + +      G ++AL   + + S +  +
Sbjct: 186 ALVNIMRTYTY-EKLLWTTSRVLKVL--SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242

Query: 238 HAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
           + +  L  +  +   +       EG++  L+QL           A
Sbjct: 243 NCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCA 283

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  104 bits (260), Expect = 8e-25
 Identities = 51/354 (14%), Positives = 113/354 (31%), Gaps = 41/354 (11%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLL 64
           L  +L +  +         L  LS     +    G++  L+ +L S D   +  A   L 
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 65  SLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLI--LSSCLEN----KLEI 118
           +L C + +NK+ + + G +  L+  +            A   +  L+S  +     +  +
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYC 178
                +  +V++L+              ++A    +  + NL+ C    +P+   G    
Sbjct: 349 RLHYGLPVVVKLLH-------PPSHWPLIKA---TVGLIRNLALCPANHAPLREQGAIPR 398

Query: 179 LLQLIHSSE--------------------KSSGLTEKAIALLENIVSSSEDALQEIAATC 218
           L+QL+  +                     +   + E     L  +     +  + +    
Sbjct: 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGL 456

Query: 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278
             I   V+ +       +  A  +L  + +    +   +I  EG    L +L        
Sbjct: 457 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGV 514

Query: 279 KNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEM 332
              A  +L  + +        K+L  EL   + +      +  A   L +  + 
Sbjct: 515 ATYAAAVLFRMSEDKP-QDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQG 567

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.1 bits (161), Expect = 4e-12
 Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 41/246 (16%)

Query: 3   EMLMDNLLNGERETQIQAANELGKL---SRRQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
            +++  L        I+A   L +           L E+G I  L+ +L     +     
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 60  LLSL---------------------LSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI 98
            +                       L +      N+I I     +P+ +++L      + 
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 474

Query: 99  ELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158
            +    +  L+   E    I + GA   L E+L+             +      A A L 
Sbjct: 475 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR-----------NEGVATYAAAVLF 523

Query: 159 NLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT 217
            +S    Q     +S  +T  L +      +     E A   L+          ++   +
Sbjct: 524 RMSEDKPQDYKKRLSVELTSSLFR-----TEPMAWNETADLGLDIGAQGEPLGYRQDDPS 578

Query: 218 CGAIRA 223
             +  +
Sbjct: 579 YRSFHS 584

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  120 bits (303), Expect = 2e-30
 Identities = 57/298 (19%), Positives = 110/298 (36%), Gaps = 21/298 (7%)

Query: 15  ETQIQAANELGKLSRRQKHK--LVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER 72
           ET    +  L  LS  ++    + + G I  L++ML S     +  A+ +L +L    E 
Sbjct: 208 ETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267

Query: 73  NKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVEIL 131
            K+ +  +G +  ++ +L   +   + +T   + IL+    E+KL I +SG  Q LV I+
Sbjct: 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327

Query: 132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSG 191
                +          +        L  LS C      IV +G    L   +     S  
Sbjct: 328 RTYTYE----------KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQR 375

Query: 192 LTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCR 251
           L +  +  L N+  ++           G +  LV+ +          A  IL  +     
Sbjct: 376 LVQNCLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNN 430

Query: 252 DKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQ 309
            K +  + + G +  L++  +    R   +    +  LR  +S    ++  +N +   
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDRED-ITEPAICALRHLTSRHQDAEMAQNAVRLH 487

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  118 bits (296), Expect = 2e-29
 Identities = 51/293 (17%), Positives = 104/293 (35%), Gaps = 20/293 (6%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAA 59
           + ++  L     +      + L  L+      K  ++  G    L++++ +  YE +   
Sbjct: 279 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
              +L +      NK  IV++G +  L   L   S  L++  +  +  LS     +  + 
Sbjct: 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 398

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYC 178
             G +  LV++L  D            +     A   L NL+  + +    +   G    
Sbjct: 399 --GLLGTLVQLLGSD-----------DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 445

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDA--LQEIAATCGAIRALVETIEEGSPQCK 236
           L++ +  +     +TE AI  L ++ S  +DA   Q        +  +V+ +   S    
Sbjct: 446 LVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505

Query: 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL 289
             A   L+     C     + + ++G +P L+QL V      +          
Sbjct: 506 IKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  104 bits (261), Expect = 7e-25
 Identities = 46/311 (14%), Positives = 103/311 (33%), Gaps = 40/311 (12%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLL 64
           L  +L +  +         L  LS     +    G++  L+ +L S D   +  A   L 
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424

Query: 65  SLACGSERNKIRIVKSGIVPVLLEVLQ--CQSTTLIELTVAAMLILSSCLEN----KLEI 118
           +L C + +NK+ + + G +  L+  +        + E  + A+  L+S  ++    +  +
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYC 178
                +  +V++L               ++A    +  + NL+ C    +P+   G    
Sbjct: 485 RLHYGLPVVVKLL-------HPPSHWPLIKA---TVGLIRNLALCPANHAPLREQGAIPR 534

Query: 179 LLQLIHSSE--------------------KSSGLTEKAIALLENIVSSSEDALQEIAATC 218
           L+QL+  +                     +   + E     L  +     +  + +    
Sbjct: 535 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN--RIVIRGL 592

Query: 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278
             I   V+ +       +  A  +L  + +    +   +I  EG    L +L        
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 279 KNMARDLLLLL 289
              A  +L  +
Sbjct: 651 ATYAAAVLFRM 661

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  103 bits (258), Expect = 2e-24
 Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 17/271 (6%)

Query: 14  RETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERN 73
            E      + +  L   Q    +    I  L  +L  +D   +  A + +  L+      
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 184

Query: 74  KIRIVKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILN 132
              +    +V  ++  +Q          T   +  LS   E  L I  SG I  LV +L 
Sbjct: 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG 244

Query: 133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISP-IVSSGVTYCLLQLIHSSEKSSG 191
                               AI TLHNL    +     +  +G    ++ L++ +  +  
Sbjct: 245 SP-----------VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVK 291

Query: 192 LTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCR 251
                   L+ +   ++++   I A  G  +ALV  +   + +      + +L +   C 
Sbjct: 292 FLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC- 349

Query: 252 DKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
              + +I++ G M  L     D + R     
Sbjct: 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 380

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 9/101 (8%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 170 IVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE 229
            +  G+     Q   +   +     +   +L++ V +  +   +      AI  L + + 
Sbjct: 101 TLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN 160

Query: 230 EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL 270
           +        A  ++  + K    +  + +    ++  +++ 
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRT 200

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  117 bits (296), Expect = 1e-29
 Identities = 58/300 (19%), Positives = 110/300 (36%), Gaps = 21/300 (7%)

Query: 13  ERETQIQAANELGKLSRRQKHK--LVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGS 70
           + ET    A  L  LS  ++    + + G I  L+ ML S     +  A+ +L +L    
Sbjct: 73  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 71  ERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVE 129
           E  K+ +  +G +  ++ +L   +   + +T   + IL+    E+KL I +SG  Q LV 
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 130 ILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS 189
           I+                +        L  LS C      IV +G    L   +     S
Sbjct: 193 IMRTY----------TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--S 240

Query: 190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249
             L +  +  L N+  ++           G +  LV+ +          A  IL  +  +
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 250 CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQ 309
              K +  + + G +  L++  +    R   +    +  LR  +S    ++  +N +   
Sbjct: 297 N-YKNKMMVCQVGGIEALVRTVLRAGDRED-ITEPAICALRHLTSRHQEAEMAQNAVRLH 354

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  117 bits (295), Expect = 1e-29
 Identities = 50/293 (17%), Positives = 104/293 (35%), Gaps = 20/293 (6%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAA 59
           + ++  L     +      + L  L+      K  ++  G    L++++ +  YE +   
Sbjct: 146 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
              +L +      NK  IV++G +  L   L   S  L++  +  +  LS     +  + 
Sbjct: 206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 265

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYC 178
             G +  LV++L  D            +     A   L NL+  + +    +   G    
Sbjct: 266 --GLLGTLVQLLGSD-----------DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDA--LQEIAATCGAIRALVETIEEGSPQCK 236
           L++ +  +     +TE AI  L ++ S  ++A   Q        +  +V+ +   S    
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL 289
             A   L+     C     + + ++G +P L+QL V      +          
Sbjct: 373 IKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 424

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 99.1 bits (247), Expect = 4e-23
 Identities = 45/304 (14%), Positives = 99/304 (32%), Gaps = 40/304 (13%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLL 64
           L  +L +  +         L  LS     +    G++  L+ +L S D   +  A   L 
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291

Query: 65  SLACGSERNKIRIVKSGIVPVLLEVLQCQSTT--LIELTVAAMLILSSCLEN----KLEI 118
           +L C + +NK+ + + G +  L+  +        + E  + A+  L+S  +     +  +
Sbjct: 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYC 178
                +  +V++L+              ++A    +  + NL+ C    +P+   G    
Sbjct: 352 RLHYGLPVVVKLLH-------PPSHWPLIKA---TVGLIRNLALCPANHAPLREQGAIPR 401

Query: 179 LLQLIHSS--------------------EKSSGLTEKAIALLENIVSSSEDALQEIAATC 218
           L+QL+  +                     +   + E     L  +        + +    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--NRIVIRGL 459

Query: 219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRA 278
             I   V+ +       +  A  +L  + +    +   +I  EG    L +L        
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 279 KNMA 282
              A
Sbjct: 518 ATYA 521

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 95.6 bits (238), Expect = 6e-22
 Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 17/249 (6%)

Query: 24  LGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV 83
           +  L   Q    +    I  L  +L  +D   +  A + +  L+         +    +V
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 84  PVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSY 142
             ++  +Q          T   +  LS   E  L I  SG I  LV++L           
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-------- 113

Query: 143 GRISVQAKIDAIATLHNLSTCHQLISP-IVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE 201
                     AI TLHNL    +     +  +G    ++ L++ +  +          L+
Sbjct: 114 ---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQ 168

Query: 202 NIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKE 261
            +   ++++   I A  G  +ALV  +   + +      + +L +   C    + +I++ 
Sbjct: 169 ILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEA 226

Query: 262 GVMPGLLQL 270
           G M  L   
Sbjct: 227 GGMQALGLH 235

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 41/221 (18%)

Query: 11  NGERETQIQAANELGKLSRR------QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLL 64
               +    A   L  L+ R       ++ +     +  ++ +L    +  +  A + L+
Sbjct: 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

Query: 65  SLACGSERNKIRIVKSGIVPVLLEVLQCQST----------------------TLIELTV 102
                   N   + + G +P L+++L                            ++E   
Sbjct: 381 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440

Query: 103 AAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST 162
            A+ IL+  + N++ I     I   V++L                  +  A   L  L+ 
Sbjct: 441 GALHILARDVHNRIVIRGLNTIPLFVQLLYSP-----------IENIQRVAAGVLCELAQ 489

Query: 163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI 203
             +    I + G T  L +L+HS  ++ G+   A A+L  +
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHS--RNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 35/183 (19%)

Query: 3   EMLMDNLLNGERETQIQAANELGKL---SRRQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
            +++  L        I+A   L +           L E+G I  L+ +L     +     
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 60  LLSL---------------------LSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI 98
            +                       L +      N+I I     +P+ +++L      + 
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 477

Query: 99  ELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158
            +    +  L+   E    I + GA   L E+L+             +      A A L 
Sbjct: 478 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR-----------NEGVATYAAAVLF 526

Query: 159 NLS 161
            +S
Sbjct: 527 RMS 529

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  100 bits (251), Expect = 3e-24
 Identities = 49/309 (15%), Positives = 110/309 (35%), Gaps = 33/309 (10%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHK--LVERGIIAPLISMLCS---------- 50
           +   + +          A   L KLS  ++H+  + E G +  +  +L            
Sbjct: 35  DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTND 94

Query: 51  -QDYEAIEAALLSLLSLACGSERNKIRIV-KSGIVPVLLEVLQCQSTTLIELTVAAMLIL 108
                    A ++L +L  G   NK  +    G +  L+  L+ +S  L ++  + +  L
Sbjct: 95  HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 154

Query: 109 SS--CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQ 165
           S    + +K  +   G+++ L+E              + S       ++ L NLS  C +
Sbjct: 155 SWRADVNSKKTLREVGSVKALMECAL--------EVKKESTLK--SVLSALWNLSAHCTE 204

Query: 166 LISPIVS-SGVTYCLLQLIHSSEKSS--GLTEKAIALLENIVS--SSEDALQEIAATCGA 220
             + I +  G    L+  +    +++   + E    +L N+ S  ++ +  ++I      
Sbjct: 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264

Query: 221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKN 280
           ++ L++ ++  S     +A   L  +        + ++   G +  L  L          
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAM 323

Query: 281 MARDLLLLL 289
            +   L  L
Sbjct: 324 GSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 42/258 (16%), Positives = 90/258 (34%), Gaps = 8/258 (3%)

Query: 57  EAALLSLLS--LACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN 114
              +L LL    A      + +      +      +       I   V  ++ LS   E+
Sbjct: 6   HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65

Query: 115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV--S 172
           +  +   G +Q + E+L  D      +    S+  +  A   L NL+         +   
Sbjct: 66  RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125

Query: 173 SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS 232
            G    L+  + S   S  L +   ++L N+   ++   ++     G+++AL+E   E  
Sbjct: 126 KGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 233 -PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ-LSVDGTWRAKNMARDLLLLLR 290
                +  ++ L  +   C +        +G +  L+  L+         +      +LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 291 DCSSFGSRSKQLKNELVE 308
           + SS  + ++  +  L E
Sbjct: 244 NVSSLIATNEDHRQILRE 261

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR------QKHKLVERGIIAPLISMLCSQDYEAI 56
             L                  L  +S         +  L E   +  L+  L S     +
Sbjct: 221 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280

Query: 57  EAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL 116
             A  +L +L+  + +++  +   G V +L  ++  +   +   + AA+  L +    K 
Sbjct: 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340

Query: 117 EIASS 121
           + A+ 
Sbjct: 341 KDANI 345

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 98.9 bits (246), Expect = 3e-23
 Identities = 49/314 (15%), Positives = 108/314 (34%), Gaps = 33/314 (10%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHK--LVERGIIAPLISML-----------C 49
           +   + +          A   L KLS  ++H+  + E G +  +  +L            
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTND 210

Query: 50  SQDYEAIEAALLSLLSLACGSERNKIRIV-KSGIVPVLLEVLQCQSTTLIELTVAAMLIL 108
                    A ++L +L  G   NK  +    G +  L+  L+ +S  L ++  + +  L
Sbjct: 211 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270

Query: 109 S--SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQ 165
           S  + + +K  +   G+++ L+E                        ++ L NLS  C +
Sbjct: 271 SWRADVNSKKTLREVGSVKALMECALEVK----------KESTLKSVLSALWNLSAHCTE 320

Query: 166 LISPIVS-SGVTYCLLQLIH--SSEKSSGLTEKAIALLENIVS--SSEDALQEIAATCGA 220
             + I +  G    L+  +   S   +  + E    +L N+ S  ++ +  ++I      
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380

Query: 221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKN 280
           ++ L++ ++  S     +A   L  +        + ++   G +  L  L          
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAM 439

Query: 281 MARDLLLLLRDCSS 294
            +   L  L     
Sbjct: 440 GSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 92.3 bits (229), Expect = 6e-21
 Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 22/265 (8%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSR---RQKHKLV-ERGIIAPLISMLCSQDYEAIEA 58
           EM      +     +  A   L  L+      K  L   +G +  L++ L S+  +  + 
Sbjct: 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262

Query: 59  ALLSLLSLACG-SERNKIRIVKSGIVPVLLEVL-QCQSTTLIELTVAAMLILSS-CLENK 115
               L +L+      +K  + + G V  L+E   + +  + ++  ++A+  LS+ C ENK
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322

Query: 116 LEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS----TCHQLISPI 170
            +I +  GA+  LV  L      +        +         L N+S    T       +
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNT-------LAIIESGGGILRNVSSLIATNEDHRQIL 375

Query: 171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE 230
             +     LLQ + S   S  +   A   L N+ + +    + +    GA+  L   I  
Sbjct: 376 RENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIHS 432

Query: 231 GSPQCKEHAVAILLLICKSCRDKYR 255
                   + A L  +  +   KY+
Sbjct: 433 KHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 49/312 (15%), Positives = 109/312 (34%), Gaps = 41/312 (13%)

Query: 25  GKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP 84
           G   R   H   +  ++  L+SML + D + +   LL++ S    S+ + I + +SG +P
Sbjct: 18  GSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSS----SQDSCISMRQSGCLP 73

Query: 85  VLLEVLQCQSTTLIELT------------VAAMLILSSCLENKLEIASSGAI-------- 124
           +L+++L       + L              AA+  +     +         +        
Sbjct: 74  LLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR 133

Query: 125 ------QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYC 178
                     E     +  D N            A+  L  LS   +    +   G    
Sbjct: 134 AYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQA 193

Query: 179 LLQLIHSSEKSSGLT---------EKAIALLENIVSSSEDALQEIAATCGAIRALVETIE 229
           + +L+    +  GLT           A   L N+          + +  G +RALV  ++
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253

Query: 230 EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL 289
             S   ++   ++L  +        + ++ + G +  L++ +++     ++  + +L  L
Sbjct: 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSAL 311

Query: 290 RDCSSFGSRSKQ 301
            + S+  + +K 
Sbjct: 312 WNLSAHCTENKA 323

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 97.4 bits (242), Expect = 1e-22
 Identities = 51/285 (17%), Positives = 114/285 (40%), Gaps = 18/285 (6%)

Query: 5   LMDNLLNGE-RETQIQAANELGKL---SRRQKHKLVERGIIAPLISMLCSQDYEAIEAAL 60
            +  L   +    Q ++A  L  +   +  Q   +V+ G I   IS+L S      E A+
Sbjct: 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 164

Query: 61  LSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVA--AMLILSSCLENKLEI 118
            +L ++A      +  ++K G +  LL +L     + +           LS+   NK   
Sbjct: 165 WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 224

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTY 177
               A+++++  L   L  +D        +   D+   +  L+   ++ I  +V  GV  
Sbjct: 225 PPLDAVEQILPTLVRLLHHNDP-------EVLADSCWAISYLTDGPNERIEMVVKKGVVP 277

Query: 178 CLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237
            L++L+ ++     +   A+  + NIV+ +++  Q++    GA+      +       ++
Sbjct: 278 QLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQK 334

Query: 238 HAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMA 282
            A   +  I  + R      ++  G++P L+ +     ++ +  A
Sbjct: 335 EATWTMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 81.2 bits (200), Expect = 4e-17
 Identities = 44/278 (15%), Positives = 98/278 (35%), Gaps = 23/278 (8%)

Query: 19  QAANELGKLSR---RQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI 75
                L  L R             I+  L+ +L   D E +  +  ++  L  G      
Sbjct: 209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268

Query: 76  RIVKSGIVPVLLEVLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGD 134
            +VK G+VP L+++L      ++   + A+  I++   E   ++  +GA+     +L   
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328

Query: 135 LADDDNSYGRISVQAKIDAIATLHNLSTCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLT 193
                          + +A  T+ N++   Q  I  +V+ G+   L+ ++  ++      
Sbjct: 329 -----------KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK--TQ 375

Query: 194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCR-- 251
           ++A   + N  S            CG I  L+  +     +  +  +  +  I ++    
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435

Query: 252 ---DKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL 286
              +K    I + G +  +  L           + +L+
Sbjct: 436 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 80.1 bits (197), Expect = 8e-17
 Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 20/261 (7%)

Query: 17  QIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLAC-GSERNKI 75
            +   ++   ++    ++      +  ++  + S + E+   A  +   L     +    
Sbjct: 35  DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94

Query: 76  RIVKSGIVPVLLEVLQCQSTTLIELTVAAML--ILSSCLENKLEIASSGAIQRLVEILNG 133
            I+++G++P  +  L     + I+   A  L  I S   E    +   GAI   + +L  
Sbjct: 95  NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 154

Query: 134 DLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSS-- 190
                              A+  L N++         ++  G    LL L+   + S+  
Sbjct: 155 P-----------HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 191 -GLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS 249
            G        L N+   +++    + A    +  LV  +    P+    +   +  +   
Sbjct: 204 CGYLRNLTWTLSNL-CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262

Query: 250 CRDKYRSSILKEGVMPGLLQL 270
             ++    ++K+GV+P L++L
Sbjct: 263 PNER-IEMVVKKGVVPQLVKL 282

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 11/218 (5%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSR---RQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
             L+  L   E      A   +G +      Q  K+++ G +A   S+L +      + A
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM--LILSSCLENKLE 117
             ++ ++  G +    ++V  G+VP L+ VL        +    A+        +E  + 
Sbjct: 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396

Query: 118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTY 177
           +   G I+ L+ +L+      D    ++ + A  +       L    +L   I   G   
Sbjct: 397 LVHCGIIEPLMNLLS----AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 178 CLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIA 215
            +  L     +S  + + ++ L+E   S  E+  Q + 
Sbjct: 453 KIEALQRHENES--VYKASLNLIEKYFSVEEEEDQNVV 488

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 97.0 bits (241), Expect = 2e-22
 Identities = 54/312 (17%), Positives = 121/312 (38%), Gaps = 22/312 (7%)

Query: 3   EMLMDNLLNGE-RETQIQAANELGKL---SRRQKHKLVERGIIAPLISMLCSQDYEAIEA 58
             L++ +   +    Q++AA  L  +   +  Q   +V+   +   I +L +   E  E 
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ 192

Query: 59  ALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI 118
           A+ +L ++A  S   +  +++   +  +L +      +LI     A   LS+    K   
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIR---TATWTLSNLCRGKKPQ 249

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS-TCHQLISPIVSSGVTY 177
                + + +  L   +   D        +  +DA   +  LS    + I  ++   +  
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDT-------ETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302

Query: 178 CLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE 237
            L++L+     S+ +   A+  + NIV+ ++   Q +    G + AL   +       K+
Sbjct: 303 RLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKK 359

Query: 238 HAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGS 297
            A   +  I  +   +   +++   ++P L++L     ++ K  A      + + SS G 
Sbjct: 360 EACWTISNIT-AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA---CWAISNASSGGL 415

Query: 298 RSKQLKNELVEQ 309
           +   +   LV Q
Sbjct: 416 QRPDIIRYLVSQ 427

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 44/265 (16%), Positives = 97/265 (36%), Gaps = 19/265 (7%)

Query: 22  NELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV-KS 80
            +   +S  Q+     +  +  +   L S D +   +A +    +     R  I +V ++
Sbjct: 70  EDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA 129

Query: 81  GIVPVLLEVLQCQSTTLIELTVAAML--ILSSCLENKLEIASSGAIQRLVEILNGDLADD 138
           G+VP L+E ++     +++L  A  L  I S        +  + A+   +++L       
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG---- 185

Query: 139 DNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI 197
                  SV+ K  AI  L N++         ++       +L L +S++ S  L   A 
Sbjct: 186 -------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--LIRTAT 236

Query: 198 ALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSS 257
             L N+    +    + +    A+  L + I     +    A   +  +    ++  ++ 
Sbjct: 237 WTLSNLCRGKKP-QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295

Query: 258 ILKEGVMPGLLQLSVDGTWRAKNMA 282
           I    +   L++L    +   +  A
Sbjct: 296 I-DVRIPKRLVELLSHESTLVQTPA 319

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 41/257 (15%), Positives = 94/257 (36%), Gaps = 31/257 (12%)

Query: 5   LMDNLLNGERETQIQAANELGKLS---RRQKHKLVERGIIAPLISMLCSQDYEAIEAALL 61
           L   + + + ET + A   +  LS   +     +++  I   L+ +L  +       AL 
Sbjct: 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321

Query: 62  SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIAS 120
           ++ ++  G++     ++ +G++P L  +L      + +     +  +++   E    +  
Sbjct: 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381

Query: 121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH----QLISPIVSSGVT 176
           +  I  LV++L                + K +A   + N S+       +I  +VS G  
Sbjct: 382 ANLIPPLVKLLEVA-----------EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430

Query: 177 YCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA----------TCGAIRALVE 226
             L  L+  ++    + E  +  LENI+   E   +                G +  +  
Sbjct: 431 KPLCDLLEIADNR--IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488

Query: 227 TIEEGSPQCKEHAVAIL 243
             +  + +  E A  I+
Sbjct: 489 CQQNENDKIYEKAYKII 505

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 10/222 (4%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSR---RQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
           + L++ L +     Q  A   +G +      Q   ++  G++  L  +L S      + A
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
             ++ ++  G+      ++ + ++P L+++L+       +    A+   SS    + +I 
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQA-----KIDAIATLHNLSTCHQLISPIVSSG 174
                Q  ++ L   L   DN    +++ A     K+            ++    I  +G
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481

Query: 175 VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA 216
               +     +   +  + EKA  ++E      EDA+ E  A
Sbjct: 482 GMEKIFNCQQNE--NDKIYEKAYKIIETYFGEEEDAVDETMA 521

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 96.5 bits (240), Expect = 2e-22
 Identities = 48/318 (15%), Positives = 117/318 (36%), Gaps = 44/318 (13%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQKH-----KLVERGIIAPLISML-CSQDYEAIEA 58
           +++ + +   E Q+ A  +  KL  ++ +      +   G++A  +  L   ++      
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 59  ALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAML-ILSSCLENKLE 117
           +   L ++A G+      ++++G VP+ +E+L  +   + E  V A+  I       +  
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144

Query: 118 IASSGAIQRLVEILNGD---------------LADDDNSYGRISVQA------------- 149
           +     +  L+++ +                 L    +     +  +             
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204

Query: 150 ----KIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIV 204
                 DA   L  LS   +  I  ++ +GV   L++L+  +     +   A+  + NIV
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIV 262

Query: 205 SSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVM 264
           +  +   Q I   C A+++L+  +       K+ A   +  I  +       +++   + 
Sbjct: 263 TGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNIT-AGNRAQIQTVIDANIF 320

Query: 265 PGLLQLSVDGTWRAKNMA 282
           P L+ +     +R +  A
Sbjct: 321 PALISILQTAEFRTRKEA 338

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 19/241 (7%)

Query: 35  LVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIR--IVKSGIVPVLLEVLQC 92
                I + +I M+ S+  E   +A      L        I   I   G+V   +E L+ 
Sbjct: 16  APGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR 75

Query: 93  QSTTLIELTVAAML--ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAK 150
           +    ++   A +L  I S        +  +GA+   +E+L+ +               +
Sbjct: 76  KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-----------FEDVQ 124

Query: 151 IDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED 209
             A+  L N++         ++   +   LLQL     + +     A+  L N+    + 
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT-RNAVWALSNL-CRGKS 182

Query: 210 ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269
              E A     +  L   +          A   L  +     DK   +++  GV   L++
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVE 241

Query: 270 L 270
           L
Sbjct: 242 L 242

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 77.6 bits (191), Expect = 6e-16
 Identities = 38/245 (15%), Positives = 85/245 (34%), Gaps = 18/245 (7%)

Query: 11  NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLA 67
                    A   L  L R              +  L  +L   D + +  A  +L  L+
Sbjct: 161 QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220

Query: 68  CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQR 126
            G       ++ +G+   L+E+L      ++   + A+  I++        I +  A+Q 
Sbjct: 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQS 280

Query: 127 LVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHS 185
           L+ +L+                 K +A  T+ N++      I  ++ + +   L+ ++ +
Sbjct: 281 LLHLLSSP-----------KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329

Query: 186 SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL 245
           +E      ++A   + N  S       +     G I+ L + +     +  + A+  L  
Sbjct: 330 AE--FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387

Query: 246 ICKSC 250
           I +  
Sbjct: 388 ILRLG 392

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 22/234 (9%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAA 59
            +L   L   + +    A   L  LS     +   +++ G+   L+ +L   DY+ +  A
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 254

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEI 118
           L ++ ++  G +     I+    +  LL +L     ++ +     +  +++        +
Sbjct: 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314

Query: 119 ASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH--QLISPIVSSGVT 176
             +     L+ IL                + + +A   + N ++    + I  +V  G  
Sbjct: 315 IDANIFPALISILQTA-----------EFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363

Query: 177 YCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE 230
             L  L+   +  S + + A+  LENI+   E   QE       I      IEE
Sbjct: 364 KPLCDLLTVMD--SKIVQVALNGLENILRLGE---QEAKRNGTGINPYCALIEE 412

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 3   EMLMDNLLNGERETQIQAA----NELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEA 58
             L+  L   E  T+ +AA    N     S  Q   LVE G I PL  +L   D + ++ 
Sbjct: 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380

Query: 59  ALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIE 99
           AL  L ++    E+   +   +GI P    + +      IE
Sbjct: 381 ALNGLENILRLGEQEA-KRNGTGINPYCALIEEAYGLDKIE 420

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 16/222 (7%)

Query: 29  RRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE 88
           R   H       +  ++  L S D + +++AL  L  +A G       ++ +G +P L++
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61

Query: 89  VLQCQSTTLIELTVAAML-ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISV 147
           +L   +  +++  + A+  I S   E    +  +GA+  LV++L+             + 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----------NE 110

Query: 148 QAKIDAIATLHNLSTCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206
           Q   +A+  L N+++     I  ++ +G    L+QL+ S   +  + ++A+  L NI S 
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG 168

Query: 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248
             +  Q +    GA+  L +     + + ++ A   L  +  
Sbjct: 169 GNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 81.1 bits (201), Expect = 3e-18
 Identities = 41/221 (18%), Positives = 96/221 (43%), Gaps = 17/221 (7%)

Query: 71  ERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVE 129
             +         +P +++ L       ++  +  +  ++S   E    +  +GA+  LV+
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61

Query: 130 ILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEK 188
           +L+             + Q   +A+  L N+++  ++ I  ++ +G    L+QL+ S  +
Sbjct: 62  LLSSP-----------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110

Query: 189 SSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248
              + ++A+  L NI S   + +Q +    GA+ ALV+ +   + Q  + A+  L  I  
Sbjct: 111 Q--ILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 249 SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL 289
              ++ + ++ + G +  L QL      + +  A++ L  L
Sbjct: 168 GGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 5   LMDNLLNGERETQIQAANELGKLS---RRQKHKLVERGIIAPLISMLCSQDYEAIEAALL 61
           L+  L +   +   +A   L  ++     Q   +++ G +  L+ +L S + + ++ AL 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160

Query: 62  SLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS 110
           +L ++A G    K  + ++G +  L ++   ++  + +    A+  L S
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 78.1 bits (191), Expect = 4e-16
 Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 27/244 (11%)

Query: 21  ANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS 80
           A+               +  +  +I+ML  +       A   L  L   +++ K  + K 
Sbjct: 30  ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL 89

Query: 81  GIVPVLLEVLQCQSTTLIELTVAAMLILSSCL--ENKLEIASSGAIQRLVEILNGDLADD 138
             +PVL+ +L      +      A+  +S     +NK+ I +   +  LV +L       
Sbjct: 90  KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR------ 143

Query: 139 DNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIA 198
                   +        TL NLS+   +   IV   +     ++I           +   
Sbjct: 144 ----KARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199

Query: 199 ---------------LLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL 243
                           L N+ S   +A +++    G + AL+  ++    Q    +  + 
Sbjct: 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVE 259

Query: 244 LLIC 247
             +C
Sbjct: 260 NCVC 263

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 68.8 bits (167), Expect = 5e-13
 Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 10/210 (4%)

Query: 5   LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISML-CSQDYEAIEAALLSL 63
                    +E     AN  G    R    L +  ++   IS+L  S+    +EA+  ++
Sbjct: 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI 333

Query: 64  LSLACG----SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
            +L  G        +  + +   +  + ++L  +   +++    A+  L+    NK  I 
Sbjct: 334 QNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIG 393

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYC 178
              AI  LV+ L        NS    S    I  + T++ +   + +    +  +     
Sbjct: 394 -KHAIPNLVKNL---PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEK 449

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSE 208
           L+ +  S  +S      A  +L+ I    E
Sbjct: 450 LVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 60.4 bits (145), Expect = 3e-10
 Identities = 37/250 (14%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 41  IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI-E 99
           ++  +     Q     EAA     +      R    + +  +V + + +L+   T  I E
Sbjct: 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327

Query: 100 LTVAAMLILSSCL-----ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI 154
            +  A+  L +         +  +    A+  + ++L  +             +    A 
Sbjct: 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-----------HERVVKAAS 376

Query: 155 ATLHNLSTCHQLISPIVSSGVTYCLLQLIHSS-----EKSSGLTEKAIALLENIVSSSED 209
             L NL+   +    I    +   +  L           S       +  +  +++ + +
Sbjct: 377 GALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436

Query: 210 ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ 269
           A +++      I  LV   + G+   KE   A L+L       + R  + KEG      Q
Sbjct: 437 AAKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQ 495

Query: 270 LSVDGTWRAK 279
           ++++   R++
Sbjct: 496 VNLNNASRSQ 505

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 28/229 (12%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 81  GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK--LEIASSGAIQRLVEILNGDLADD 138
            ++   +   Q     L +    ++  L S  +            +  ++ +L       
Sbjct: 5   FMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR---- 60

Query: 139 DNSYGRISVQAKIDAIATLHNLS-TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI 197
                      K +A A L +L     ++ + +        L+ L+        +   A 
Sbjct: 61  -------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP--KKEVHLGAC 111

Query: 198 ALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSCRDKYRS 256
             L+NI    +   +     C  + ALV  + +       E     L  +     D  + 
Sbjct: 112 GALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKM 169

Query: 257 SILKEGVMP-GLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKN 304
            I+   +       +     W  +         +   S   + +  L+N
Sbjct: 170 EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 76.4 bits (187), Expect = 1e-15
 Identities = 40/272 (14%), Positives = 89/272 (32%), Gaps = 12/272 (4%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSR---RQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
              +  L + + + Q   A  +          K ++ + G I  L+ +L S +    +AA
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
             +L +L   S  NK+   +   +   + +L+      I+  +  +L   S  +   E  
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 120 SSGAIQRLVEIL-----NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS- 173
            + A+  L + +          + + S   +  +   +A   L NLS+       + +  
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 174 GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSP 233
           G+   L+  +         +      +EN +    +    + A        +E     + 
Sbjct: 185 GLIDSLMAYVQ---NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 234 QCKEHAVAILLLICKSCRDKYRSSILKEGVMP 265
             K           K   + Y   + +E   P
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 76.0 bits (186), Expect = 2e-15
 Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 25/248 (10%)

Query: 41  IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIEL 100
           I   +  L SQD +        +       E  K ++ + G +  L+++L+  +  + + 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 101 TVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN 159
              A+  L      NKLE      I+  V +L              + + +      L N
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT----------GNAEIQKQLTGLLWN 113

Query: 160 LSTCHQLISPIVSSGVTYCLLQLIH-------------SSEKSSGLTEKAIALLENIVSS 206
           LS+  +L   +++  +     ++I                     +   A   L N+ SS
Sbjct: 114 LSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL-SS 172

Query: 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG 266
           ++   Q +    G I +L+  ++      +    ++   +C      YR           
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 267 LLQLSVDG 274
           L   + + 
Sbjct: 233 LEYNARNA 240

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 14/210 (6%)

Query: 6   MDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAI-EAALLSLL 64
             N  +              + + +    L     I   ++++     +A  EA   +L 
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309

Query: 65  SLACG-----SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA 119
           +L        S  +++  +K   +P +  +LQ  ++ ++    + +  +S        + 
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG 369

Query: 120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYC 178
           +      +  +L              S      A  T+ NL     QL     SS +   
Sbjct: 370 NQV-FPEVTRLL-----TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSE 208
           ++ L  SS  S    E A  LL ++ SS E
Sbjct: 424 IINLCRSSA-SPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 28/252 (11%), Positives = 70/252 (27%), Gaps = 27/252 (10%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLS 62
           E  M  L N       +      +L    ++   E+       +          +  L  
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268

Query: 63  LLSLACGSERNKIRIVKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENK------ 115
                  + +    +  S  +   L ++   +    +E    A+  L++           
Sbjct: 269 E----ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324

Query: 116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGV 175
           L       + ++  +L              +        + L N+S    L   + +   
Sbjct: 325 LIGLKEKGLPQIARLLQSG-----------NSDVVRSGASLLSNMSRHPLLHRVMGNQVF 373

Query: 176 TYCLLQLI---HSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EG 231
                 L     ++  S  +   A   + N+++S     ++  +    +  ++       
Sbjct: 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS-SSMLNNIINLCRSSA 432

Query: 232 SPQCKEHAVAIL 243
           SP+  E A  +L
Sbjct: 433 SPKAAEAARLLL 444

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLS---RRQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
            ML  +  +        AA  +          + ++ +   I  L+ +L  Q+ +   A 
Sbjct: 15  SMLEAD--HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVL-QCQSTTLIELTVAAMLILSSCLENKLEI 118
             +L +L      NK+ + +   VP LL+VL Q +     +     +  LSS  + K  +
Sbjct: 73  CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM 132

Query: 119 ASSGAIQRLVEIL----NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV--S 172
            +   +     I+         D   + G +      +    L N+S+        +   
Sbjct: 133 ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC 192

Query: 173 SGVTYCLLQLIHSS----EKSSGLTEKAIALLEN 202
            G+   L+  +  +    +     TE  + +L N
Sbjct: 193 DGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.0 bits (171), Expect = 3e-14
 Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 32/225 (14%)

Query: 41  IAPLISMLCSQD--YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLI 98
           +   +SML +       I AA   +          + R+ +   +  LL++L+ Q+  + 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 99  ELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157
                A+  L     +NKLE+A    + RL+++L               ++ K      L
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ----------TRDLETKKQITGLL 119

Query: 158 HNLSTCHQLISPIVSSGVTYCLLQLIH-------------SSEKSSGLTEKAIALLENIV 204
            NLS+  +L + +++  +      +I              +      +       L N+ 
Sbjct: 120 WNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS 179

Query: 205 SSSEDALQEIAATCGAIRALVETIEEGSPQCK------EHAVAIL 243
           S+  D  + +    G I +LV  +       +      E+ V IL
Sbjct: 180 SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 25/179 (13%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAA 59
             L+  L     + Q      L  L       K ++ E   +  L+ +L        +  
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEVL------------QCQSTTLIELTVAAMLI 107
           +  LL     +++ K  ++   ++ +   ++            +       ++       
Sbjct: 115 ITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGC 174

Query: 108 L----SSCLENKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS 161
           L    S+  + +  +    G I  LV  + G +AD          +A  + +  LHNLS
Sbjct: 175 LRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ-----PDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 9/92 (9%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 179 LLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH 238
            + ++ +          A   +++      +A ++       I  L++ ++  +   +  
Sbjct: 13  AVSMLEADHMLPSRISAAATFIQHECFQKSEA-RKRVNQLRGILKLLQLLKVQNEDVQRA 71

Query: 239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQL 270
               L  +     +  +  + +   +P LLQ+
Sbjct: 72  VCGALRNLVFED-NDNKLEVAELNGVPRLLQV 102

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 35/243 (14%), Positives = 84/243 (34%), Gaps = 17/243 (6%)

Query: 30  RQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-SGIVPVLLE 88
           +   +++ + +         + D +  E AL  L  L    + N     + SG+  ++  
Sbjct: 31  KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGR 89

Query: 89  VLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISV 147
            L+  +  L       +   S  +   + ++   GA+++L+ +L+ D             
Sbjct: 90  YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD----------ACD 139

Query: 148 QAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS 206
             ++ A+  +  L       +   +       L++ +        L  K+  LL+N++  
Sbjct: 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVG 197

Query: 207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG 266
             +  +    + G ++ LV  +        EH +  L  +        R     E  +  
Sbjct: 198 HPE-HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE 256

Query: 267 LLQ 269
           LL+
Sbjct: 257 LLR 259

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 21/210 (10%)

Query: 35  LVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ 93
             +   +  L+   L +        A   + + +      + +++  G +  LL +L   
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD-- 134

Query: 94  STTLIELTVAAMLILSSCL----ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA 149
                 + V A+  +S  +       L+         L+  +                + 
Sbjct: 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----------VQKL 183

Query: 150 KIDAIATLHNLSTCH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE 208
           K+ +   L NL   H +    + S G+   L+ L+ +    S   E  +  L ++V+   
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFP 241

Query: 209 DALQEIAATCGAIRALVETIEEGSPQCKEH 238
             ++E       +  L+    +   Q +E+
Sbjct: 242 QGVRECREPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 28  SRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL 87
                 + +     + L+  +  Q  +    +   L +L  G   +K  +   G+V  L+
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 88  EVLQCQSTTLIELTVAAMLILSSCLENKLEI--ASSGAIQRLVEILNGDLADDD 139
            +++ + +   E  + A+  L +     +         ++ L+      L   +
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 56.8 bits (136), Expect = 4e-09
 Identities = 41/303 (13%), Positives = 77/303 (25%), Gaps = 45/303 (14%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLS 62
             LMD    G +            L    + + +          M+    +         
Sbjct: 424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP-------EMIELAKFAKQHIPEEH 476

Query: 63  LLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSG 122
            L       +    +   GI   L  + + +S    EL    +  +    E + ++   G
Sbjct: 477 ELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG 536

Query: 123 AIQRLVEILN--------------GDLADDDNSYGRISVQAKIDAIATLHNL-------- 160
            ++ L+ +                  +    N     S Q  +D I  L NL        
Sbjct: 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL 596

Query: 161 -------------STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS 207
                        S    +   I+       +   +        LT  A   L N+V  S
Sbjct: 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--DHLYLTRAAAQCLCNLV-MS 653

Query: 208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL 267
           ED ++        ++ L    E+   +        L +I           +     +  L
Sbjct: 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713

Query: 268 LQL 270
             L
Sbjct: 714 HTL 716

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 48/327 (14%), Positives = 87/327 (26%), Gaps = 104/327 (31%)

Query: 3   EMLMDNLLNG--ERETQIQAANELG----KLSRR--QKHKLVERGIIAPLISMLCSQDY- 53
            + +D+        E +      L      L R     +      I   +   L + D  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 54  ---------EAIEAALLSLLSLACGSERN---KIRI----VKSGIVPVLLEVLQCQSTTL 97
                      IE+   SL  L     R    ++ +        I  +LL ++       
Sbjct: 348 KHVNCDKLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKS 402

Query: 98  IELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISV-------QAK 150
                  M+++     NKL   S              L +       IS+       + K
Sbjct: 403 DV-----MVVV-----NKLHKYS--------------LVEKQPKESTISIPSIYLELKVK 438

Query: 151 IDAIATLH-------NLSTCHQL--ISPIVSSGVTYCL----LQLIHSSEKSSGLTE--- 194
           ++    LH       N+        + P       Y      L+ I   E+ +       
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 195 ---------KAIALLENIVSSSEDALQE-------IAATCGAIRALVETIEEGSPQCKEH 238
                    +  +   N   S  + LQ+       I         LV  I +  P+ +E+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 239 AVAILLLICKSCRDKYRSSILKEGVMP 265
                L+  K         +L+  +M 
Sbjct: 559 -----LICSKYTD------LLRIALMA 574

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 71  ERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEI 130
             N+  I+++ ++  L   +   S    +  V  +  ++       ++A  GA++ ++E 
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY 506

Query: 131 LNGDLADDDNSYGRISVQA--KIDAIAT----LHNLSTCHQLISPIVS---SGVTYCLLQ 181
           L  +  D       +  +A  ++  I T    +    +    I  +              
Sbjct: 507 LA-NKQDIGEPIRILGCRALTRM-LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564

Query: 182 LIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE 230
           L +  +       +A+  L N+ SS     +E+     + +    TIE 
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.95
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.95
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.95
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3grl_A	651	General vesicular transport factor P115; vesicle t	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.59
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.52
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.46
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.44
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.41
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.38
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.34
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.29
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.26
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.25
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.17
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.16
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.15
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.14
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.13
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.13
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.13
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.86
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.83
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.79
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.63
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.59
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.53
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.52
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.51
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.43
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.41
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.34
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.29
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.2
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.17
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.17
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.14
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.13
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.1
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.03
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.93
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.76
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.72
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.43
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.42
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.23
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.86
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.77
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.62
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.6
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.48
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.32
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.06
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.06
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.05
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.0
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.9
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.84
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.82
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.81
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.76
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.72
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.69
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.66
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.26
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.15
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.64
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	93.74
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.36
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	93.25
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.23
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.68
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.2
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	91.81
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.41
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	90.88
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	90.32
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.73
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	89.3
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	89.05
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	88.22
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	87.04
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	87.02
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	86.89
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	86.62
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	86.18
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	86.01
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	85.57
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	85.17
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	84.54
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	81.65

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.8e-36  Score=283.27  Aligned_cols=304  Identities=17%  Similarity=0.157  Sum_probs=252.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.||.+|.+++++.|..|+++|++++.+   .+..+.+.|+||.|+.+|++++++++..|+++|.+|+.++++++..+++
T Consensus         5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~   84 (457)
T 1xm9_A            5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5789999999999999999999999965   6879999999999999999999999999999999999977999999999


Q ss_pred             cCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhc--------CCCCCCCCccCCCCHHHH
Q 048113           80 SGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILN--------GDLADDDNSYGRISVQAK  150 (339)
Q Consensus        80 ~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--------~~~~~~~~~~~~~~~~~~  150 (339)
                      .|++|.|+++|. ++++++++.|+++|+||+.++++|..|.+ |++|.|++++.        ++.   .......++.+.
T Consensus        85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~---~~~~e~~~~~v~  160 (457)
T 1xm9_A           85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNS---NMSREVVDPEVF  160 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC------------CCCHHHH
T ss_pred             cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCcc---chhcccccHHHH
Confidence            999999999999 78899999999999999998888998999 99999999993        210   000001256777


Q ss_pred             HHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHHhhcc----ccCchHHHHHHHHHHHhhcCCH-----------------
Q 048113          151 IDAIATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSS----EKSSGLTEKAIALLENIVSSSE-----------------  208 (339)
Q Consensus       151 ~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n~l~~~~-----------------  208 (339)
                      ..|+++|+|||.+++++..+++. |+++.|+.+|+++    ..+.+.+++|+.+|. +++...                 
T Consensus       161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~-nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLH-NLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHH-HHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHH-hcccchhccCcchhhhccccccc
Confidence            89999999999988889999998 9999999999862    124678899999999 565211                 


Q ss_pred             ----------------------------------hhhHHHHhhCCcHHHHHHHhhcC-ChHHHHHHHHHHHHhhccCch-
Q 048113          209 ----------------------------------DALQEIAATCGAIRALVETIEEG-SPQCKEHAVAILLLICKSCRD-  252 (339)
Q Consensus       209 ----------------------------------~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~-  252 (339)
                                                        .+.+.+.+ .|+++.|+.+|.++ ++.+++.|+++|.|+|..+.. 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              11222333 57789999999864 689999999999999986533 


Q ss_pred             --hH-HHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          253 --KY-RSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       253 --~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                        .. +..+.++|++|.|++++.++++.++..|+++|++|+.+.+   ....+..+++..++..+.
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~---~~~~i~~~~i~~Lv~lL~  381 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL---LHRVMGNQVFPEVTRLLT  381 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG---GHHHHHHHTHHHHHHTTT
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH---HHHHHHHhhhHHHHHhcc
Confidence              12 3334468999999999999999999999999999998654   455667788888887765

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3.3e-36  Score=274.71  Aligned_cols=268  Identities=19%  Similarity=0.188  Sum_probs=236.4

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113           14 RETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus        14 ~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      ...+..|+++|.+++.+  +|+.+.+.|+++.|+.+|..           .++.++.+|+++|.+|+.+++.++..+...
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            35667899999999986  99999999999999999953           246899999999999999766788888655


Q ss_pred             -CChHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           81 -GIVPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        81 -g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                       |+||.|+.+|.++++++++.|+++|.||+..  +.+|..|.+.|+||.|+++|.+.          .+..+++.|+.+|
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~----------~~~~~~~~A~~aL  195 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----------KKESTLKSVLSAL  195 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC----------CCHHHHHHHHHHH
Confidence             5599999999999999999999999999974  46799999999999999975432          6889999999999


Q ss_pred             HhhcC-CCCChHHHH-hcCcHHHHHHHhhccccCc--hHHHHHHHHHHHhhc----CCHhhhHHHHhhCCcHHHHHHHhh
Q 048113          158 HNLST-CHQLISPIV-SSGVTYCLLQLIHSSEKSS--GLTEKAIALLENIVS----SSEDALQEIAATCGAIRALVETIE  229 (339)
Q Consensus       158 ~nLs~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~n~l~----~~~~~~~~i~~~~g~i~~Lv~lL~  229 (339)
                      +||+. +++++..++ ..|+++.|+++|.++.+..  ++++.|+++|. +++    .+++++..+.+ .|+++.|+++|+
T Consensus       196 ~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~-nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~  273 (354)
T 3nmw_A          196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR-NVSSLIATNEDHRQILRE-NNCLQTLLQHLK  273 (354)
T ss_dssp             HHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHT-TTHHHHHHHHTT
T ss_pred             HHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHH-HHHhhccCCHHHHHHHHH-cCCHHHHHHHHc
Confidence            99998 668888888 6799999999998753221  58999999999 566    48899988887 899999999999


Q ss_pred             cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          230 EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       230 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      +++..+++.|+++|+|++..+ ++.++.+.+.|++|+|+++++++++.+++.|+++|.+|+.+.+
T Consensus       274 ~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          274 SHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999655 4478899999999999999999999999999999999998765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.2e-35  Score=281.95  Aligned_cols=325  Identities=18%  Similarity=0.199  Sum_probs=259.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG-SERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~~i~   78 (339)
                      +.||.+|.+++++.+..|+++|.+++.+   +|..+.+.|+||.|+.+|+++++++++.|+++|.||+.+ ++++|..|+
T Consensus        51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~  130 (584)
T 3l6x_A           51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK  130 (584)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            5789999999999999999999999963   999999999999999999999999999999999999995 589999999


Q ss_pred             hcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCC-CCCCC--C----ccCCCCHHHH
Q 048113           79 KSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGD-LADDD--N----SYGRISVQAK  150 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~--~----~~~~~~~~~~  150 (339)
                      +.|+||.|+.+|.+ .+.++++.++++|+||+.++++|..|++ ++++.|++++..+ +.|..  +    ...+.+..++
T Consensus       131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~  209 (584)
T 3l6x_A          131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL  209 (584)
T ss_dssp             HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred             HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence            99999999999997 5788999999999999999999999985 5799999987210 00000  0    0122468999


Q ss_pred             HHHHHHHHhhcCCC-CChHHHHhc-CcHHHHHHHhhcc----ccCchHHHHHHHHHHHhhcCCHh---------------
Q 048113          151 IDAIATLHNLSTCH-QLISPIVSS-GVTYCLLQLIHSS----EKSSGLTEKAIALLENIVSSSED---------------  209 (339)
Q Consensus       151 ~~a~~~L~nLs~~~-~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n~l~~~~~---------------  209 (339)
                      .+|+++|.||+... +++..+++. |+++.|+.++++.    ..+.+.+++|+++|. |++...+               
T Consensus       210 ~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~-NLs~~~~~e~~~~~~~~~~~~~  288 (584)
T 3l6x_A          210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR-NLSYQVHREIPQAERYQEAAPN  288 (584)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH-HHHTTHHHHSTTCCC-------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHH-Hhhccccccccchhhhhhhccc
Confidence            99999999999865 569999987 7788999999752    235688999999999 5654421               


Q ss_pred             -----------hhHHHHhhCCcHHHHHHHhhc-CChHHHHHHHHHHHHhhccCch---hHHHHHHhcCChHHHHHhhhcC
Q 048113          210 -----------ALQEIAATCGAIRALVETIEE-GSPQCKEHAVAILLLICKSCRD---KYRSSILKEGVMPGLLQLSVDG  274 (339)
Q Consensus       210 -----------~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~g~i~~L~~ll~~~  274 (339)
                                 +...+.+ .++++.|+.+|++ .++.+++.|+++|+|||.....   ..+..+.+++++|.|++|+.++
T Consensus       289 ~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~  367 (584)
T 3l6x_A          289 VANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE  367 (584)
T ss_dssp             -------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred             ccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence                       1111122 3457788999974 5799999999999999976422   2344555689999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC--------cccchHHHHHHHHHH
Q 048113          275 TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG--------DTVAGTTLRLVEEMI  333 (339)
Q Consensus       275 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~a~~~l~~~v  333 (339)
                      ++.+++.|+++|+||+.+..   .+..+..+++..+++.+....        +++...|-+.|.+++
T Consensus       368 ~~~v~~~A~~aL~nLs~~~~---~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~  431 (584)
T 3l6x_A          368 HERVVKAASGALRNLAVDAR---NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI  431 (584)
T ss_dssp             CHHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCChh---HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence            99999999999999999775   556678888888888875322        122334556665554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=9.3e-35  Score=279.27  Aligned_cols=328  Identities=16%  Similarity=0.227  Sum_probs=275.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.+|+.++|+|++.|..|+..++.+...    -.+.+++.|+||+|+++|++ +++++|..|+++|.|++.++++++..+
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            5689999999999999999999997653    46789999999999999975 568999999999999999899999999


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCC-----------------
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDD-----------------  139 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~-----------------  139 (339)
                      ++.|++|.|+.+|.++++++++.|+++|+||+.+. .++..+.+.|+++.|+.++..+.....                 
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999764 568889999999999999987532110                 


Q ss_pred             --Cc-----------------cCCCCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113          140 --NS-----------------YGRISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       140 --~~-----------------~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                        ..                 ..+.+++++..|+++|++|+..++. ...+.+.|+++.|+.+|.+.  +..++..++.+
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~a  297 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRA  297 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHH
Confidence              00                 4678889999999999999986654 45677889999999999985  57899999999


Q ss_pred             HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113          200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK  279 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (339)
                      |+|..+.++..+..+.+ .|+++.|+.+|+++++.+++.|+++|.|++..++ ..+..+.+.|++|.|+.++.+++..++
T Consensus       298 L~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~  375 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQ  375 (510)
T ss_dssp             HHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH-HHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence            99666667778888887 8999999999999999999999999999998764 478888999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      ..|+++|.+++..+...........++++.++..+...+.++...+...|.++..
T Consensus       376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999876542222234456777777776655555666667776666653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=271.93  Aligned_cols=265  Identities=19%  Similarity=0.190  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHhccCCcchhhHHhhc-CC
Q 048113           17 QIQAANELGKLSRR--QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSLACGSERNKIRIVKS-GI   82 (339)
Q Consensus        17 ~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-g~   82 (339)
                      +..|+++|.|++.+  +|+.+.+.|++++|+.+|..           .++.++.+|+++|.||+.+++.++..+... |+
T Consensus       165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            34999999999876  99999999999999999952           346789999999999999766688777655 56


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      ||.|+.+|.++++++++.|+++|.||+..  +.+|..|.+.|+++.|+++|...          .+..+++.|+.+|+||
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s----------~~~~v~~~A~~aL~nL  314 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----------KKESTLKSVLSALWNL  314 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC----------CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC----------CCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999974  46789999999999999986442          6889999999999999


Q ss_pred             cC-CCCChHHHH-hcCcHHHHHHHhhccccCc--hHHHHHHHHHHHhhc----CCHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113          161 ST-CHQLISPIV-SSGVTYCLLQLIHSSEKSS--GLTEKAIALLENIVS----SSEDALQEIAATCGAIRALVETIEEGS  232 (339)
Q Consensus       161 s~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~n~l~----~~~~~~~~i~~~~g~i~~Lv~lL~~~~  232 (339)
                      +. .++++..++ ..|+++.|+++|.++.+..  ++++.|+++|. +++    .+++++..+.+ .|+++.|+++|++++
T Consensus       315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~-nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~  392 (458)
T 3nmz_A          315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR-NVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHS  392 (458)
T ss_dssp             HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH-HHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSC
T ss_pred             ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH-HHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCC
Confidence            98 778898888 6799999999998753221  48999999999 566    58899989887 899999999999999


Q ss_pred             hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          233 PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       233 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      ..+++.|+++|+|++..+ ++.+..+.+.|++|+|++++.++++.+++.|+++|.+|+.+.+
T Consensus       393 ~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          393 LTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             hHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999654 4578899999999999999999999999999999999998754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.1e-33  Score=271.09  Aligned_cols=328  Identities=16%  Similarity=0.227  Sum_probs=276.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.++..+.|+|++.+..|+..++++...    ..+.+++.|+||.|+.+|+. ++++++..|+++|.+++.+++.++..+
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4578899999999999999999997653    56788999999999999964 579999999999999999888899999


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCC-----------------
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDD-----------------  139 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-----------------  139 (339)
                      ++.|++|.|+.+|.++++++++.|+++|+||+.+ +.++..+.+.|++++|+.++..+.....                 
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999975 4678899999999999999976432110                 


Q ss_pred             ---C----------------ccCCCCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113          140 ---N----------------SYGRISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       140 ---~----------------~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                         .                -..+.+++++..|+++|.+++..++. ...+++.|+++.|+.+|.+.  +..++..++.+
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~a  316 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRA  316 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHH
Confidence               0                04678889999999999999986644 56677889999999999875  57899999999


Q ss_pred             HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113          200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK  279 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (339)
                      |+|.++.++..+..+.+ .|+++.|+.+|.++++.++..|+++|.|++..++ ..+..+.+.|++|.|+.++.++++.++
T Consensus       317 L~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          317 IGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             HHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99665667778888887 8999999999999999999999999999998764 477888899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      ..|+++|.+++.++...........++++.++..+...+.++...+...|.++..
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999876542212233456777777777655556666667777776653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=264.40  Aligned_cols=315  Identities=19%  Similarity=0.172  Sum_probs=254.1

Q ss_pred             HHHHHHHcC------------CCHHHHHHHHHHHHHHHHH---HHHHHHhcCCh----------HHHHHHhccCC--HH-
Q 048113            3 EMLMDNLLN------------GERETQIQAANELGKLSRR---QKHKLVERGII----------APLISMLCSQD--YE-   54 (339)
Q Consensus         3 ~~Lv~~L~s------------~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i----------~~Lv~lL~~~~--~~-   54 (339)
                      +.||++|..            ++++.+.+|+++|.|++.+   ..+...+.|++          +.+++++.+..  .+ 
T Consensus        73 p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  152 (458)
T 3nmz_A           73 PLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ  152 (458)
T ss_dssp             HHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCC
T ss_pred             HHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccc
Confidence            578899985            3479999999999999987   44455556666          55666666542  12 


Q ss_pred             ----HHH-------HHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCc
Q 048113           55 ----AIE-------AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-----------QSTTLIELTVAAMLILSSCL  112 (339)
Q Consensus        55 ----~~~-------~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~  112 (339)
                          +++       +|+++|.|++. ++++|..|.+.|++++|+.+|..           .++.++..|+++|.||+..+
T Consensus       153 ~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~  231 (458)
T 3nmz_A          153 DKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD  231 (458)
T ss_dssp             CSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence                444       89999999999 69999999999999999999952           23678999999999999866


Q ss_pred             c-chHHHHh-cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC--CCChHHHHhcCcHHHHHHHhhcccc
Q 048113          113 E-NKLEIAS-SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC--HQLISPIVSSGVTYCLLQLIHSSEK  188 (339)
Q Consensus       113 ~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~  188 (339)
                      + ++..+.. .|+||.|+++|++           ++++++..|+++|+||+..  ++++..+++.|+++.|+++|.+. .
T Consensus       232 ~~~k~~i~~~~GaIp~LV~LL~s-----------~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s-~  299 (458)
T 3nmz_A          232 VANKATLCSMKGCMRALVAQLKS-----------ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-K  299 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-C
T ss_pred             cccHHHHHHcCCcHHHHHHHHhC-----------CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-C
Confidence            5 6777764 5669999999998           8999999999999999984  46889999999999999986543 2


Q ss_pred             CchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCCh----HHHHHHHHHHHHhhc---cCchhHHHHHHh
Q 048113          189 SSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSP----QCKEHAVAILLLICK---SCRDKYRSSILK  260 (339)
Q Consensus       189 ~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~  260 (339)
                      +..+++.++.+|+ +++. +++++..++...|+++.|+++|.++++    .+++.|+++|+|++.   .+ ++.++.+.+
T Consensus       300 ~~~v~~~A~~aL~-nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~  377 (458)
T 3nmz_A          300 KESTLKSVLSALW-NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRE  377 (458)
T ss_dssp             SHHHHHHHHHHHH-HHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-HHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHH
Confidence            5788999999999 6777 788999998448999999999997654    489999999999996   33 458899999


Q ss_pred             cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhh-hhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          261 EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK-QLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       261 ~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      .|++|.|++++++++..+++.|+++|.+|+...+.  +.. ....++++.++..+....++++..|...|.++..
T Consensus       378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK--DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH--HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999964331  333 3445666766665544456668888888888764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-32  Score=271.89  Aligned_cols=315  Identities=14%  Similarity=0.133  Sum_probs=264.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--------------------------------HH---HHHHhcCChHHHHHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--------------------------------QK---HKLVERGIIAPLISM   47 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--------------------------------~~---~~i~~~g~i~~Lv~l   47 (339)
                      +.||.+|+++++..+..|+++|.|++.+                                ++   +.+++.|++|.|+.+
T Consensus       424 p~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L  503 (810)
T 3now_A          424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL  503 (810)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence            5789999999999999999999999962                                22   678899999999999


Q ss_pred             hccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHH---HhcchH
Q 048113           48 LCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEI---ASSGAI  124 (339)
Q Consensus        48 L~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i---~~~g~i  124 (339)
                      |+++++.+++.|+++|.|++. ++++|..+++.|++|+|+.+|.++++..++.|+++|.||+...+....+   ...|++
T Consensus       504 L~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI  582 (810)
T 3now_A          504 AKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI  582 (810)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred             HcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence            999999999999999999998 7889999999999999999999999999999999999998643322222   124699


Q ss_pred             HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh
Q 048113          125 QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI  203 (339)
Q Consensus       125 ~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~  203 (339)
                      |+|+++|.++          .+...+..|+++|.||+.. ++++..+++.|+++.|+.+|.+.  +..++..|+.+++ +
T Consensus       583 ppLv~LL~~~----------~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~-N  649 (810)
T 3now_A          583 RPLLNLLQQD----------CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLC-N  649 (810)
T ss_dssp             HHHHHTTSTT----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHH-H
T ss_pred             HHHHHHhCCC----------CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHH-H
Confidence            9999999862          3556667899999999986 57889999999999999999875  5789999999999 7


Q ss_pred             hcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCCHHHHHHH
Q 048113          204 VSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGTWRAKNMA  282 (339)
Q Consensus       204 l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A  282 (339)
                      ++.+++.+..++...|+++.|+.++.+++..+++.|+++|++++..++. .++.+++ .|++|+|+.++.+++..++..|
T Consensus       650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A  728 (810)
T 3now_A          650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRG  728 (810)
T ss_dssp             HTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred             HhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence            8888889888884369999999999999999999999999999985433 5677787 8999999999999999999999


Q ss_pred             HHHHHHHhccCCCcchhhh-hhhHHHHHHHHHHHhc---CcccchHHHHHHHHHHH
Q 048113          283 RDLLLLLRDCSSFGSRSKQ-LKNELVEQIMQEIDAE---GDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       283 ~~~L~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~~a~~~l~~~v~  334 (339)
                      ++++.|+..++..  +.+. ...++++.+...+...   ..++.+.|...|..+++
T Consensus       729 ~~aL~NL~~~s~e--~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          729 IVIILNMINAGEE--IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHHHHHHTTCHH--HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHH--HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            9999999875432  3333 3455555555444322   35567778888888865

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5.5e-32  Score=259.97  Aligned_cols=314  Identities=16%  Similarity=0.232  Sum_probs=254.4

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.||.+|+ ++++.+|..|+++|.|++.+   ++..+++.|+||.|+.+|+++++++++.|+++|++++.+++..|..+.
T Consensus       103 p~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~  182 (510)
T 3ul1_B          103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVI  182 (510)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            57899997 56789999999999999875   888999999999999999999999999999999999997788899999


Q ss_pred             hcCChHHHHHhhcCCC-----------------------------------------------hhHHHHHHHHHHHHhcC
Q 048113           79 KSGIVPVLLEVLQCQS-----------------------------------------------TTLIELTVAAMLILSSC  111 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~-----------------------------------------------~~~~~~a~~~L~nLs~~  111 (339)
                      +.|+++.|+.++.+++                                               ++++..|+++|.+|+..
T Consensus       183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~  262 (510)
T 3ul1_B          183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  262 (510)
T ss_dssp             HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            9999998888875432                                               34455666666666654


Q ss_pred             ccc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccC
Q 048113          112 LEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       112 ~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                      +.. ...+.+.|+++.|++++.+           .+..++..++++|+|++. ++..+..+.+.|+++.|+.+|.++  +
T Consensus       263 ~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~  329 (510)
T 3ul1_B          263 PNERIEMVVKKGVVPQLVKLLGA-----------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--K  329 (510)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS--S
T ss_pred             hhhhHHHHHhcccchhhhhhhcC-----------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC--C
Confidence            433 4456677888888888888           799999999999999977 556778899999999999999875  5


Q ss_pred             chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113          190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      ..++..|+++|+|..+..+..+..+.+ .|+++.|+.++++++..++..|+++|.|++.....+.+..+.+.|++++|+.
T Consensus       330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~  408 (510)
T 3ul1_B          330 TNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  408 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence            789999999999655566777777876 8999999999999999999999999999998765667788899999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHHhccCCCcchhh----hh-hhHHHHHHHHHHH-hcCcccchHHHHHHHH
Q 048113          270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSK----QL-KNELVEQIMQEID-AEGDTVAGTTLRLVEE  331 (339)
Q Consensus       270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~----~~-~~~~~~~i~~~~~-~~~~~~~~~a~~~l~~  331 (339)
                      ++.+.++.++..++++|.++....+.....+    .+ ..+++.. +..+. -+++++..+|..++..
T Consensus       409 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-ie~Lq~~~n~~i~~~A~~iie~  475 (510)
T 3ul1_B          409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-IEALQRHENESVYKASLNLIEK  475 (510)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH-HHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH-HHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875432111111    12 2233433 33333 4567788888888754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.2e-32  Score=270.44  Aligned_cols=314  Identities=16%  Similarity=0.149  Sum_probs=262.5

Q ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHHH--HHHHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc-----
Q 048113            3 EMLMDNLLNG--ERETQIQAANELGKLSRR--QKHKLV-ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER-----   72 (339)
Q Consensus         3 ~~Lv~~L~s~--~~~~~~~a~~~L~~l~~~--~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-----   72 (339)
                      +.|+.+|.++  +++++..|+++|..++.+  .|..++ +.|++|.|+.+|+++++.++..|+++|.||+.+++.     
T Consensus       380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~  459 (810)
T 3now_A          380 EACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP  459 (810)
T ss_dssp             HHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhH
Confidence            4578888887  899999999999999986  777766 589999999999999999999999999999985421     


Q ss_pred             ------------------------hh---hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHH
Q 048113           73 ------------------------NK---IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQ  125 (339)
Q Consensus        73 ------------------------~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~  125 (339)
                                              ++   +.++++|++|.|+.++.++++.+++.|+++|.|++.+++++..+.+.|++|
T Consensus       460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip  539 (810)
T 3now_A          460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK  539 (810)
T ss_dssp             SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence                                    22   678899999999999999999999999999999998888999999999999


Q ss_pred             HHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH---hcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113          126 RLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV---SSGVTYCLLQLIHSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       126 ~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n  202 (339)
                      +|+.+|.+           +++..+..|+++|.||+.+.+....+.   ..|++++|+.+|.++ .+...+..|+.+|.|
T Consensus       540 ~Lv~LL~s-----------~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~N  607 (810)
T 3now_A          540 ALLRMALE-----------GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTN  607 (810)
T ss_dssp             HHHHHHHS-----------SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHcc-----------CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHH
Confidence            99999998           789999999999999987543333221   247999999999853 123335689999994


Q ss_pred             hhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh-cCChHHHHHhhhcCCHHHHHH
Q 048113          203 IVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK-EGVMPGLLQLSVDGTWRAKNM  281 (339)
Q Consensus       203 ~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~  281 (339)
                      +....++++..+++ .|+++.|++++.++++.+++.|+++|+|++.+  ++.+..+.+ .|.+|.|+.++.+.+..+|..
T Consensus       608 La~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~  684 (810)
T 3now_A          608 LASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEETATA  684 (810)
T ss_dssp             HTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred             HhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence            43444688888987 89999999999999999999999999999976  346777775 799999999999999999999


Q ss_pred             HHHHHHHHhccCCCcchhh-hhh-hHHHHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113          282 ARDLLLLLRDCSSFGSRSK-QLK-NELVEQIMQEIDAEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       282 A~~~L~~l~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v  333 (339)
                      |+++|.+|+.+++.  +.+ .+. .+.++.++..+..+.++++..|...+.+++
T Consensus       685 Aa~ALanLt~~s~~--~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          685 CAGALAIITSVSVK--CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI  736 (810)
T ss_dssp             HHHHHHHHHHHCHH--HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHH--HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            99999999985331  333 344 578888887776666777888888887765

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.6e-31  Score=257.91  Aligned_cols=315  Identities=16%  Similarity=0.221  Sum_probs=255.4

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.||.+|. +.++..+..|+++|.+++.+   .+..+++.|+||.|+.+|.++++++++.|+++|++++.+++.+|..+.
T Consensus       122 p~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~  201 (529)
T 3tpo_A          122 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVI  201 (529)
T ss_dssp             HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            57889996 56689999999999999975   778899999999999999999999999999999999998888999999


Q ss_pred             hcCChHHHHHhhcCC-----------------------------------------------ChhHHHHHHHHHHHHhcC
Q 048113           79 KSGIVPVLLEVLQCQ-----------------------------------------------STTLIELTVAAMLILSSC  111 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~-----------------------------------------------~~~~~~~a~~~L~nLs~~  111 (339)
                      +.|+++.|+.+|..+                                               +++++..|+++|.+++..
T Consensus       202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~  281 (529)
T 3tpo_A          202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  281 (529)
T ss_dssp             HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence            999998888877532                                               234556667777777754


Q ss_pred             ccc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccC
Q 048113          112 LEN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       112 ~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                      +.. ...+.+.|+++.|+.++.+           .+..++..++.+|+|++. ++..+..+.+.|+++.|+.+|.++  +
T Consensus       282 ~~~~~~~v~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~  348 (529)
T 3tpo_A          282 PNERIEMVVKKGVVPQLVKLLGA-----------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--K  348 (529)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--S
T ss_pred             hhhhHHHHHhccchHHHHHHhcC-----------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--C
Confidence            433 4566788999999999998           799999999999999987 556778899999999999999875  5


Q ss_pred             chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113          190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      ..++..|+++|+|..+..+..+..+.+ .|+++.|+.++.+++..++..|+++|.|++.....+.+..+.+.|++++|+.
T Consensus       349 ~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~  427 (529)
T 3tpo_A          349 TNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  427 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence            789999999999655566777777776 8999999999999999999999999999998655667778899999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHHhccCCCcchhhh----h-hhHHHHHHHHHHHhcCcccchHHHHHHHH
Q 048113          270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQ----L-KNELVEQIMQEIDAEGDTVAGTTLRLVEE  331 (339)
Q Consensus       270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~----~-~~~~~~~i~~~~~~~~~~~~~~a~~~l~~  331 (339)
                      ++.+.++.+...++++|.++....+.....+.    + ..++++.|-....-+.+++..+|..++..
T Consensus       428 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~  494 (529)
T 3tpo_A          428 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  494 (529)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999998754321101111    1 12333332221113457778888887754

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.8e-31  Score=254.49  Aligned_cols=317  Identities=15%  Similarity=0.177  Sum_probs=269.9

Q ss_pred             HHHHHHHcCCC-HHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGE-RETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~-~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.+++ +.++..|+++|.+++.+   ++..+.+.|+++.|+.+|.++++.++..|+++|++++.+++.++..+.
T Consensus       120 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~  199 (528)
T 4b8j_A          120 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVL  199 (528)
T ss_dssp             HHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            57899999876 99999999999999984   888999999999999999999999999999999999997788899999


Q ss_pred             hcCChHHHHHhh-cCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVL-QCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|+++.|+.+| .++++.++..++++|.+|+...+........++++.|+.++.+           .++.++..|+++|
T Consensus       200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-----------~~~~v~~~a~~aL  268 (528)
T 4b8j_A          200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-----------NDEEVLTDACWAL  268 (528)
T ss_dssp             HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-----------CCHHHHHHHHHHH
T ss_pred             HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHH
Confidence            999999999999 5668999999999999999876555555668999999999988           7999999999999


Q ss_pred             HhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-ChHH
Q 048113          158 HNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-SPQC  235 (339)
Q Consensus       158 ~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~  235 (339)
                      .+++..++. ...+++.|+++.|+.+|.++  +..++..|+.+|+|.....+..+..+.+ .|+++.|+.+|.++ ++.+
T Consensus       269 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v  345 (528)
T 4b8j_A          269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSI  345 (528)
T ss_dssp             HHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHH
Confidence            999986554 46778889999999999885  5789999999999544456777777886 89999999999998 8999


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      +..|+++|.+++..++ .....+.+.|++|.|+.++.++++.++..|+++|.+++..+...........+.++.++..+.
T Consensus       346 ~~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  424 (528)
T 4b8j_A          346 KKEACWTISNITAGNK-DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI  424 (528)
T ss_dssp             HHHHHHHHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc
Confidence            9999999999998653 467778889999999999999999999999999999988632111222234566777766665


Q ss_pred             hcCcccchHHHHHHHHHHH
Q 048113          316 AEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       316 ~~~~~~~~~a~~~l~~~v~  334 (339)
                      ...+++...|...|..++.
T Consensus       425 ~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          425 CPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             CSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            5556667777777777764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.4e-30  Score=251.30  Aligned_cols=316  Identities=17%  Similarity=0.202  Sum_probs=270.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQD-YEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.|+..|.+++++.+..|++.|++++..    ....+.+.|+++.|+.+|++++ +.++..|+++|.+++.++++++..+
T Consensus        77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~  156 (528)
T 4b8j_A           77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVV  156 (528)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            4688999999999999999999999764    5788899999999999999886 9999999999999999878999999


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      ++.|++|.|+.+|.++++.++..|+++|.|++.+. .++..+.+.|+++.|+.++...          .++.++..++++
T Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~----------~~~~v~~~a~~~  226 (528)
T 4b8j_A          157 IDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH----------TKLSMLRNATWT  226 (528)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT----------CCHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC----------CCHHHHHHHHHH
Confidence            99999999999999999999999999999999754 5688888999999999999543          789999999999


Q ss_pred             HHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhh-hHHHHhhCCcHHHHHHHhhcCChHH
Q 048113          157 LHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDA-LQEIAATCGAIRALVETIEEGSPQC  235 (339)
Q Consensus       157 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~  235 (339)
                      |.+|+............|+++.|+.++.+.  +..++..|+++|+ +++..+.. ...+.+ .|+++.|+.+|.++++.+
T Consensus       227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~-~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v  302 (528)
T 4b8j_A          227 LSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALS-YLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSV  302 (528)
T ss_dssp             HHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHH-HHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHH
T ss_pred             HHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH-HHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhH
Confidence            999998765555666789999999999874  5789999999999 56655444 456665 899999999999999999


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113          236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI  314 (339)
Q Consensus       236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~  314 (339)
                      +..|+++|.+++..++ ..+..+.+.|++|.|+.++.++ ++.++..|+++|.+|+..... .....+..+.++.++..+
T Consensus       303 ~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-~~~~~~~~~~i~~L~~lL  380 (528)
T 4b8j_A          303 LIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-QIQAVINAGIIGPLVNLL  380 (528)
T ss_dssp             HHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-HHHHHHHCCCHHHHHHHH
Confidence            9999999999998654 4677888999999999999999 999999999999999875431 112334457777777777


Q ss_pred             HhcCcccchHHHHHHHHHHH
Q 048113          315 DAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       315 ~~~~~~~~~~a~~~l~~~v~  334 (339)
                      .....+++..|...|.++..
T Consensus       381 ~~~~~~v~~~a~~aL~nl~~  400 (528)
T 4b8j_A          381 QTAEFDIKKEAAWAISNATS  400 (528)
T ss_dssp             HHSCHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHc
Confidence            55556777778877777654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.5e-31  Score=253.40  Aligned_cols=317  Identities=17%  Similarity=0.156  Sum_probs=252.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.+++++.+..|+++|++++.+   ++..+.+.|+||.|+++|+ ++++++++.|+++|.+|+.+ +++|..++
T Consensus        47 ~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~  125 (457)
T 1xm9_A           47 CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELI  125 (457)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHH
Confidence            6799999999999999999999999963   9999999999999999999 88999999999999999995 88999999


Q ss_pred             hcCChHHHHHhhc--------CC--------ChhHHHHHHHHHHHHhcCccchHHHHhc-chHHHHHHHhcCCCCCCCCc
Q 048113           79 KSGIVPVLLEVLQ--------CQ--------STTLIELTVAAMLILSSCLENKLEIASS-GAIQRLVEILNGDLADDDNS  141 (339)
Q Consensus        79 ~~g~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~  141 (339)
                      + |++|.|+.+|.        ++        ++.+...|+++|.||+.+++++..+.+. |+++.|+.++++....    
T Consensus       126 ~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----  200 (457)
T 1xm9_A          126 A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA----  200 (457)
T ss_dssp             H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH----
T ss_pred             h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc----
Confidence            9 99999999993        22        3456679999999999887788999987 9999999999851000    


Q ss_pred             cCCCCHHHHHHHHHHHHhhcCC---------------------------------------------------CCChHHH
Q 048113          142 YGRISVQAKIDAIATLHNLSTC---------------------------------------------------HQLISPI  170 (339)
Q Consensus       142 ~~~~~~~~~~~a~~~L~nLs~~---------------------------------------------------~~~~~~i  170 (339)
                       +..+...+++++.+|+||+..                                                   ++..+.+
T Consensus       201 -~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (457)
T 1xm9_A          201 -SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL  279 (457)
T ss_dssp             -TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred             -cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence             002345778888889998631                                                   2233456


Q ss_pred             HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-Hh----hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113          171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-ED----ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL  245 (339)
Q Consensus       171 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  245 (339)
                      .+.|+++.|+.+|.+.. ++.+++.|+++|. +++.. ..    ..+.++.+.|++|.|+++|.+++..++..|+++|.|
T Consensus       280 ~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~-nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n  357 (457)
T 1xm9_A          280 YHSDAIRTYLNLMGKSK-KDATLEACAGALQ-NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN  357 (457)
T ss_dssp             GSHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             hCcchHHHHHHHHhhcC-CHHHHHHHHHHHH-HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence            67789999999998763 5789999999999 45543 22    212344348999999999999999999999999999


Q ss_pred             hhccCchhHHHHHHhcCChHHHHHhhhcCCH------HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc-C
Q 048113          246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTW------RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE-G  318 (339)
Q Consensus       246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~------~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  318 (339)
                      ++.+.  +.+.. +..|++|+|++++.++++      .+...++++|.++...... ........++++.++.....+ .
T Consensus       358 ls~~~--~~~~~-i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~~  433 (457)
T 1xm9_A          358 MSRHP--LLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSAS  433 (457)
T ss_dssp             HHTSG--GGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTC
T ss_pred             HhcCH--HHHHH-HHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCCc
Confidence            99863  35554 456899999999998743      5778999999999765442 123345678888888887655 5


Q ss_pred             cccchHHHHHHHHH
Q 048113          319 DTVAGTTLRLVEEM  332 (339)
Q Consensus       319 ~~~~~~a~~~l~~~  332 (339)
                      +++..+|..+|.++
T Consensus       434 ~~i~~~A~~~L~~~  447 (457)
T 1xm9_A          434 PKAAEAARLLLSDM  447 (457)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788888887654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.3e-30  Score=248.78  Aligned_cols=317  Identities=15%  Similarity=0.192  Sum_probs=269.2

Q ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNG-ERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.++ ++.++..|+++|.+++.+   .+..+.+.|+++.|+.+|++++++++..|+++|.+++.+++.++..+.
T Consensus       133 ~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~  212 (530)
T 1wa5_B          133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL  212 (530)
T ss_dssp             HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHH
Confidence            5788889887 899999999999999984   778888999999999999999999999999999999997788999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      ..|+++.|+.++.++++.++..|+++|.+|+... +........++++.|+.++.+           .++.++..|+++|
T Consensus       213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d~~v~~~a~~~L  281 (530)
T 1wa5_B          213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-----------MDTETLVDACWAI  281 (530)
T ss_dssp             HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-----------CCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence            9999999999999999999999999999999765 555556678999999999988           7899999999999


Q ss_pred             HhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      .+|+.. ++....+++.|+++.|+.+|.+.  +..++..|+.+|+|.....+.....+.+ .|+++.|+.+|+++++.++
T Consensus       282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr  358 (530)
T 1wa5_B          282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIK  358 (530)
T ss_dssp             HHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred             HHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHH
Confidence            999975 45677888899999999999874  5789999999999544456666777776 7999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCC--cchhhhhhhHHHHHHHHHH
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSF--GSRSKQLKNELVEQIMQEI  314 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~~~~~i~~~~  314 (339)
                      ..|+++|.+++..++. ....+.+.|++|.|+.++.++++.++..|+++|.+++.....  .........++++.++..+
T Consensus       359 ~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll  437 (530)
T 1wa5_B          359 KEACWTISNITAGNTE-QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL  437 (530)
T ss_dssp             HHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999986543 566778899999999999999999999999999999875421  1122233456677766665


Q ss_pred             HhcCcccchHHHHHHHHHHH
Q 048113          315 DAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       315 ~~~~~~~~~~a~~~l~~~v~  334 (339)
                      .....+++..|...|..++.
T Consensus       438 ~~~~~~v~~~al~aL~~l~~  457 (530)
T 1wa5_B          438 EIADNRIIEVTLDALENILK  457 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHH
Confidence            44456667777777777664

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=1.4e-30  Score=249.76  Aligned_cols=317  Identities=13%  Similarity=0.155  Sum_probs=250.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHH---H-HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSR---R-QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~---~-~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.||.+|.+++++++..|+++|++++.   . +|..+.+.|+|+.|+.+|++ .+.++++.|+.+|++|+. +++++..|
T Consensus        93 p~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I  171 (584)
T 3l6x_A           93 PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEI  171 (584)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHH
Confidence            679999999999999999999999996   4 99999999999999999997 588999999999999999 79999999


Q ss_pred             hhcCChHHHHHhhc------------------CCChhHHHHHHHHHHHHhcCcc-chHHHHhc-chHHHHHHHhcCCCCC
Q 048113           78 VKSGIVPVLLEVLQ------------------CQSTTLIELTVAAMLILSSCLE-NKLEIASS-GAIQRLVEILNGDLAD  137 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~  137 (339)
                      ++ |++|.|++++.                  .+++.+++.|+++|.||+...+ ++..|.+. |+++.|+.++++... 
T Consensus       172 ~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~-  249 (584)
T 3l6x_A          172 VD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG-  249 (584)
T ss_dssp             HH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHH-
T ss_pred             Hh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhc-
Confidence            95 67999999872                  2257899999999999998664 48888864 677899999975100 


Q ss_pred             CCCccCCCCHHHHHHHHHHHHhhcCCC--------------------------CChHHHHhcCcHHHHHHHhhccccCch
Q 048113          138 DDNSYGRISVQAKIDAIATLHNLSTCH--------------------------QLISPIVSSGVTYCLLQLIHSSEKSSG  191 (339)
Q Consensus       138 ~~~~~~~~~~~~~~~a~~~L~nLs~~~--------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~  191 (339)
                          .+..+...+++|+++|+|||...                          .+...+.+.++++.|+.+|+.+. ...
T Consensus       250 ----~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~  324 (584)
T 3l6x_A          250 ----QKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPA  324 (584)
T ss_dssp             ----TTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHH
T ss_pred             ----ccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHH
Confidence                00036678999999999998641                          12234455567888999997653 588


Q ss_pred             HHHHHHHHHHHhhcCCH-----hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHH
Q 048113          192 LTEKAIALLENIVSSSE-----DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPG  266 (339)
Q Consensus       192 ~~~~a~~~L~n~l~~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~  266 (339)
                      +++.|+++|. +++...     ..+..+. +.|+++.|+++|.++++.+++.|+++|.||+.+..  .+.. +..|++|.
T Consensus       325 v~E~Aa~AL~-nL~ag~~~~~~~~~~~v~-~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~-I~~g~ip~  399 (584)
T 3l6x_A          325 ILEASAGAIQ-NLCAGRWTYGRYIRSALR-QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKEL-IGKHAIPN  399 (584)
T ss_dssp             HHHHHHHHHH-HHHSSCSHHHHHHHHHHT-SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHH-HHHHHHHH
T ss_pred             HHHHHHHHHH-HHHcCCccccHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHH-HHhCCHHH
Confidence            9999999999 554331     2333343 47899999999999999999999999999998753  4554 47899999


Q ss_pred             HHHhhhcC--------CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc--CcccchHHHHHHHHHH
Q 048113          267 LLQLSVDG--------TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE--GDTVAGTTLRLVEEMI  333 (339)
Q Consensus       267 L~~ll~~~--------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~a~~~l~~~v  333 (339)
                      |++++.++        +..+...|+++|.||...+.. +.+.....++++.++..+...  ++.+...|..+|.++.
T Consensus       400 LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          400 LVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             HHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            99999876        467889999999999765432 123345678888888887543  4555666777777664

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.97  E-value=1.5e-29  Score=244.27  Aligned_cols=316  Identities=15%  Similarity=0.148  Sum_probs=270.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.|+..|.+++++.+..|+..|+++...    .+..+.+.|+++.|+.+|+++ ++.++..|+++|.+++.++++++..+
T Consensus        90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~  169 (530)
T 1wa5_B           90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  169 (530)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            5688899999999999999999998642    667788999999999999997 89999999999999999878889999


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      ++.|++|.|+.+|.++++.+++.|+++|.+++... .++..+...|+++.|+.++.+           .++.++..|+++
T Consensus       170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~v~~~a~~~  238 (530)
T 1wa5_B          170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-----------NKPSLIRTATWT  238 (530)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-----------CCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-----------CCHHHHHHHHHH
Confidence            99999999999999999999999999999999764 568888899999999999998           789999999999


Q ss_pred             HHhhcCCC-CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113          157 LHNLSTCH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC  235 (339)
Q Consensus       157 L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  235 (339)
                      |.+|+... .........|+++.|+.++.+.  +..++..++++|.++....++.+..+.+ .|+++.|+.+|.++++.+
T Consensus       239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v  315 (530)
T 1wa5_B          239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLV  315 (530)
T ss_dssp             HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHH
T ss_pred             HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhh
Confidence            99999865 5556667789999999999875  5789999999999544445667777776 899999999999999999


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      +..|+++|.+++..++. ....+.+.|++|.|+.++.++++.++..|+++|.+|+..+... ....+..++++.++..+.
T Consensus       316 ~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~-~~~~~~~~~l~~L~~lL~  393 (530)
T 1wa5_B          316 QTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ-IQAVIDANLIPPLVKLLE  393 (530)
T ss_dssp             HHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHh
Confidence            99999999999987543 6677788999999999999999999999999999998754310 122334567777777775


Q ss_pred             hcCcccchHHHHHHHHHHH
Q 048113          316 AEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       316 ~~~~~~~~~a~~~l~~~v~  334 (339)
                      ....+++..|...|.++..
T Consensus       394 ~~~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          394 VAEYKTKKEACWAISNASS  412 (530)
T ss_dssp             HSCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh
Confidence            5556677778777777654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=1.9e-29  Score=237.89  Aligned_cols=316  Identities=17%  Similarity=0.208  Sum_probs=262.0

Q ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNG-ERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+..|.++ ++.+|..|+++|.+++.+   ....+.+.|+++.|+.+|++++++++..|+++|.+++.+++.++..+.
T Consensus        67 ~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~  146 (450)
T 2jdq_A           67 ARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL  146 (450)
T ss_dssp             HHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            5678888888 899999999999999973   667778899999999999999999999999999999997778899999


Q ss_pred             hcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCc-cc-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCL-EN-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~-~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      +.|+++.|+.++.+ +++.++..++++|.+++... +. +..+ ..++++.|++++.+           .++.++..+++
T Consensus       147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~-----------~~~~v~~~a~~  214 (450)
T 2jdq_A          147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFV-----------SDTDVLADACW  214 (450)
T ss_dssp             HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTC-----------CCHHHHHHHHH
T ss_pred             HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHcc-----------CCHHHHHHHHH
Confidence            99999999999996 68999999999999999754 32 3333 37899999999988           78999999999


Q ss_pred             HHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChH
Q 048113          156 TLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQ  234 (339)
Q Consensus       156 ~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  234 (339)
                      +|.+++.. ++.+..+.+.|+++.|++++.+.  +..++..|+.+|+|.....+..+..+.+ .|+++.|+++++++++.
T Consensus       215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~  291 (450)
T 2jdq_A          215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKES  291 (450)
T ss_dssp             HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHH
T ss_pred             HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHH
Confidence            99999985 46677788899999999999864  5789999999999443444555566665 79999999999999999


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113          235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI  314 (339)
Q Consensus       235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~  314 (339)
                      ++..|+++|.+++..++. ..+.+.+.|++|.|++++.++++.++..|+++|.+++...........+..+.++.++..+
T Consensus       292 vr~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll  370 (450)
T 2jdq_A          292 IKKEACWTISNITAGNRA-QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL  370 (450)
T ss_dssp             HHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence            999999999999976543 6677888999999999999999999999999999998753211112233455666666665


Q ss_pred             HhcCcccchHHHHHHHHHHH
Q 048113          315 DAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       315 ~~~~~~~~~~a~~~l~~~v~  334 (339)
                      .....+++..|...|..+..
T Consensus       371 ~~~~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          371 TVMDSKIVQVALNGLENILR  390 (450)
T ss_dssp             GSSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHH
Confidence            44445667777777776654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=7.5e-31  Score=239.37  Aligned_cols=243  Identities=20%  Similarity=0.195  Sum_probs=209.2

Q ss_pred             HHHHHHHcC-----------CCHHHHHHHHHHHHHHHHH---HHHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 048113            3 EMLMDNLLN-----------GERETQIQAANELGKLSRR---QKHKLVE-RGIIAPLISMLCSQDYEAIEAALLSLLSLA   67 (339)
Q Consensus         3 ~~Lv~~L~s-----------~~~~~~~~a~~~L~~l~~~---~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls   67 (339)
                      +.|+.+|.+           .++..|..|+++|.+++.+   ++..+.. .|+||.|+.+|+++++++++.|+++|++|+
T Consensus        76 ~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs  155 (354)
T 3nmw_A           76 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS  155 (354)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence            577888842           2467899999999999975   6666755 556999999999999999999999999999


Q ss_pred             cC-CcchhhHHhhcCChHHHHHhh-cCCChhHHHHHHHHHHHHhc-CccchHHHH-hcchHHHHHHHhcCCCCCCCCccC
Q 048113           68 CG-SERNKIRIVKSGIVPVLLEVL-QCQSTTLIELTVAAMLILSS-CLENKLEIA-SSGAIQRLVEILNGDLADDDNSYG  143 (339)
Q Consensus        68 ~~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~  143 (339)
                      .+ ++++|..+.+.|++|.|+++| .++++++++.|+.+|+||+. +++++..|. ..|+++.|+++|.++++       
T Consensus       156 ~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~-------  228 (354)
T 3nmw_A          156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ-------  228 (354)
T ss_dssp             TTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCS-------
T ss_pred             ccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCC-------
Confidence            84 578999999999999999975 56788999999999999998 667888888 78999999999987310       


Q ss_pred             CCCHHHHHHHHHHHHhhcC----CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhC
Q 048113          144 RISVQAKIDAIATLHNLST----CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVS-SSEDALQEIAATC  218 (339)
Q Consensus       144 ~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~  218 (339)
                      +...++++.|+++|+||+.    +++++..+.+.|+++.|+++|+++  +..+++.|+++|. +++ .+++++..+.+ .
T Consensus       229 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~-nLa~~~~~~~~~i~~-~  304 (354)
T 3nmw_A          229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLW-NLSARNPKDQEALWD-M  304 (354)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS--CHHHHHHHHHHHH-HHTSSCHHHHHHHHH-T
T ss_pred             cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC--ChHHHHHHHHHHH-HHhCCCHHHHHHHHH-C
Confidence            0112689999999999985    778899999999999999999975  5789999999999 566 68899999987 8


Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHH
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRS  256 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  256 (339)
                      |+++.|+++|+++++.+++.|+++|.+|+...+.+++.
T Consensus       305 G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~  342 (354)
T 3nmw_A          305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD  342 (354)
T ss_dssp             THHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence            99999999999999999999999999999987765443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=2.1e-29  Score=219.09  Aligned_cols=240  Identities=22%  Similarity=0.289  Sum_probs=219.9

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHH
Q 048113           39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLE  117 (339)
Q Consensus        39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~  117 (339)
                      |.++.|+.+|++++++++..|+++|.+++.++++++..+.+.|+++.|+.+|.+++++++..++++|.+++.. ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            6789999999999999999999999999997777999999999999999999999999999999999999986 677899


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                      +.+.|+++.|++++++           .++.++..|+++|.+|+. +++++..+.+.|+++.|+++++++  +..++..+
T Consensus        82 ~~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a  148 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTS-----------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEA  148 (252)
T ss_dssp             HHHTTHHHHHHHHTTC-----------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHH
Confidence            9999999999999998           799999999999999995 678889999999999999999975  57899999


Q ss_pred             HHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC
Q 048113          197 IALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT  275 (339)
Q Consensus       197 ~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~  275 (339)
                      +.+|+ +++. .+..+..+.+ .|+++.|+++++++++.++..|+++|.+++..+ +..++.+.+.|+++.|++++.+++
T Consensus       149 ~~~L~-~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~  225 (252)
T 4hxt_A          149 ARALA-NIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTD  225 (252)
T ss_dssp             HHHHH-HHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred             HHHHH-HHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCc
Confidence            99999 5655 5666677776 899999999999999999999999999999865 447888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 048113          276 WRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       276 ~~~~~~A~~~L~~l~~~~~  294 (339)
                      +.+++.|+++|.+|.....
T Consensus       226 ~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          226 SEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999999998654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=1.7e-29  Score=220.36  Aligned_cols=232  Identities=19%  Similarity=0.347  Sum_probs=212.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHH-H--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSR-R--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~-~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.++.+|.+++++++..|+++|+++.. +  ++..+.+.|+++.|+.+|++++++++..|+++|.+++.++++++..+.+
T Consensus        15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   94 (252)
T 4db8_A           15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID   94 (252)
T ss_dssp             HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            578999999999999999999987655 3  8889999999999999999999999999999999999988999999999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch-HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK-LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .|++|.|+.+|.++++.++..|+++|.|++.+++.+ ..+.+.|+++.|++++++           .++.++..|+++|+
T Consensus        95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----------~~~~v~~~a~~~L~  163 (252)
T 4db8_A           95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----------PNEQILQEALWALS  163 (252)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-----------SCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-----------CCHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887 888899999999999998           79999999999999


Q ss_pred             hhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          159 NLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       159 nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      +|+.. ++.+..+.+.|+++.|++++.++  +..++..|+.+|+|.+...++.+..+.+ .|+++.|+++++++++.+++
T Consensus       164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~  240 (252)
T 4db8_A          164 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQK  240 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHH
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHH
Confidence            99984 56677888999999999999875  5889999999999554567788888887 89999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048113          238 HAVAILLLICK  248 (339)
Q Consensus       238 ~a~~~L~~l~~  248 (339)
                      .|+++|.+++.
T Consensus       241 ~A~~~L~~l~~  251 (252)
T 4db8_A          241 EAQEALEKLQS  251 (252)
T ss_dssp             THHHHHHTTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999999974

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=4.9e-28  Score=228.15  Aligned_cols=315  Identities=15%  Similarity=0.166  Sum_probs=263.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHH---H-HHHHHHhc-CChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSR---R-QKHKLVER-GIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~---~-~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      +.|+..|.++++.+|..|+..|+.+..   + ....+.+. |+++.|+.+|+++ ++.++..|+++|.+++.+++++...
T Consensus        23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  102 (450)
T 2jdq_A           23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI  102 (450)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            468899999999999999999999865   2 33456666 9999999999998 8999999999999999977788888


Q ss_pred             HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           77 IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      +++.|++|.|+.+|.++++.+++.|+++|.+++... ..+..+.+.|+++.|+++++++          .+..++..|++
T Consensus       103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----------~~~~v~~~a~~  172 (450)
T 2jdq_A          103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ----------NRLTMTRNAVW  172 (450)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC----------CCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----------CCHHHHHHHHH
Confidence            999999999999999999999999999999999765 5688888999999999999863          68999999999


Q ss_pred             HHHhhcCCC--CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCC
Q 048113          156 TLHNLSTCH--QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGS  232 (339)
Q Consensus       156 ~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~  232 (339)
                      +|.+++...  .....++ .|+++.|++++.+.  +..++..++++|. +++. .++.+..+.. .|+++.|++++.+++
T Consensus       173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~-~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~  247 (450)
T 2jdq_A          173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALS-YLSDGPNDKIQAVID-AGVCRRLVELLMHND  247 (450)
T ss_dssp             HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHH-HHTSSSHHHHHHHHH-TTTHHHHHHHTTCSC
T ss_pred             HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHH-HHHCCCcHHHHHHHH-cCcHHHHHHHHCCCc
Confidence            999999753  4444444 78999999999874  5789999999999 5655 4566777776 899999999999999


Q ss_pred             hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHH
Q 048113          233 PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQ  312 (339)
Q Consensus       233 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~  312 (339)
                      +.++..|+++|.+++...+. .++.+.+.|++|.|++++.++++.++..|+++|.+++.+.... ....+..+.++.++.
T Consensus       248 ~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~  325 (450)
T 2jdq_A          248 YKVVSPALRAVGNIVTGDDI-QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ-IQTVIDANIFPALIS  325 (450)
T ss_dssp             HHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhCChH-HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHH
Confidence            99999999999999987543 5667788999999999999999999999999999998754311 122234567777777


Q ss_pred             HHHhcCcccchHHHHHHHHHHH
Q 048113          313 EIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       313 ~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      .+.....+++..|...|.++..
T Consensus       326 ~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          326 ILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHHc
Confidence            7654456677777777776654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=2.5e-29  Score=241.91  Aligned_cols=310  Identities=16%  Similarity=0.214  Sum_probs=267.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.++++.+|..|+.+|.+++.+  ++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+. +++++..+.
T Consensus        20 ~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~   98 (529)
T 1jdh_A           20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIF   98 (529)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHH
Confidence            5789999999999999999999999986  7766665 58999999999765 89999999999999999 578999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|++|.|+.+|.++++.++..|+++|.+++.. +..+..+.+.|+++.|++++++           .++.++..++.+|
T Consensus        99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~~~~~~~~~L  167 (529)
T 1jdh_A           99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL  167 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHHHHHH
Confidence            999999999999999999999999999999976 4557888899999999999998           7899999999999


Q ss_pred             HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      .+++. +++++..+.+.|+++.|++++++++ .......++.+|. +++.+++++..+.+ .|+++.|+++++++++.++
T Consensus       168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~-~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~  244 (529)
T 1jdh_A          168 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHH-HHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHH
Confidence            99987 5788899999999999999999864 5677888999999 78889999999997 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  316 (339)
                      +.++++|.+++...+..    ....|++|.|++++.+.++.++..|+++|.+|+..++. ........++++.++..+..
T Consensus       245 ~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~~v~~L~~ll~~  319 (529)
T 1jdh_A          245 QNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             HHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH-HHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHHc
Confidence            99999999999765321    12247899999999999999999999999999876431 12334456778888888764


Q ss_pred             cC--cccchHHHHHHHHH
Q 048113          317 EG--DTVAGTTLRLVEEM  332 (339)
Q Consensus       317 ~~--~~~~~~a~~~l~~~  332 (339)
                      .+  ++++..|.+.|.++
T Consensus       320 ~~~~~~v~~~a~~~L~nl  337 (529)
T 1jdh_A          320 AGDREDITEPAICALRHL  337 (529)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            33  56777788777765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=8.8e-29  Score=238.12  Aligned_cols=300  Identities=20%  Similarity=0.221  Sum_probs=253.4

Q ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNG-ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+..|.++ +++++..|+.+|++++.+  ++..+.+.|+++.|+.+|++++++++..|+++|.+++.+++..+..+.+
T Consensus        62 ~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  141 (529)
T 1jdh_A           62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL  141 (529)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            4678888754 899999999999999875  8999999999999999999999999999999999999976788889999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .|++|.|+.++.+++++++..++.+|.+++.. ++++..+.+.|+++.|+++++++          .....+..++.+|+
T Consensus       142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~----------~~~~~~~~a~~~L~  211 (529)
T 1jdh_A          142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK  211 (529)
T ss_dssp             HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHHHH
Confidence            99999999999999999999999999999974 56788899999999999999884          56677788999999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhcc-------------------------------------ccCchHHHHHHHHHH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSS-------------------------------------EKSSGLTEKAIALLE  201 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------------------------------------~~~~~~~~~a~~~L~  201 (339)
                      +|+.+++++..+++.|+++.|++++.++                                     +.+.+++..|+++|+
T Consensus       212 ~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999888899998888888877776542                                     124667788888999


Q ss_pred             HhhcC-CHhhhHHHHhhCCcHHHHHHHhhcC--ChHHHHHHHHHHHHhhccCch--hHHHHHHhcCChHHHHHhhhcCC-
Q 048113          202 NIVSS-SEDALQEIAATCGAIRALVETIEEG--SPQCKEHAVAILLLICKSCRD--KYRSSILKEGVMPGLLQLSVDGT-  275 (339)
Q Consensus       202 n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~i~~L~~ll~~~~-  275 (339)
                       +++. .++++..+.+ .|+++.|++++.+.  ++.+++.|+.+|.+++..++.  ..+..+.+.|++|.|++++.+++ 
T Consensus       292 -~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~  369 (529)
T 1jdh_A          292 -NLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  369 (529)
T ss_dssp             -HHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred             -HHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc
Confidence             4544 4678888887 89999999999863  379999999999999976433  25678889999999999999876 


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113          276 WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       276 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  316 (339)
                      +.++..|+++|.+++.++..  +......+.++.++..+..
T Consensus       370 ~~v~~~a~~~l~nl~~~~~~--~~~~~~~~~i~~L~~ll~~  408 (529)
T 1jdh_A          370 WPLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSGGG--HHHHHHTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcChhh--hHHHHHcCCHHHHHHHHHH
Confidence            68999999999999986653  3334456677777777653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=1.7e-28  Score=213.31  Aligned_cols=236  Identities=24%  Similarity=0.329  Sum_probs=215.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+..|.+++++++..|+++|.+++.+   ++..+.+.|+++.|+.+|++++++++..|+++|.+++.+++.++..+.+
T Consensus         5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   84 (252)
T 4hxt_A            5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD   84 (252)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            5789999999999999999999999875   8889999999999999999999999999999999999977999999999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHh-cCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILS-SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .|+++.|+.++.+++++++..|+++|.+++ .++..+..+.+.|+++.|++++++           .++.++..++++|+
T Consensus        85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----------~~~~~~~~a~~~L~  153 (252)
T 4hxt_A           85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-----------TDSEVQKEAARALA  153 (252)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-----------SCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHH
Confidence            999999999999999999999999999999 566778889999999999999998           78999999999999


Q ss_pred             hhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          159 NLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       159 nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      |++.. +..+..+.+.|+++.|++++.++  ++.++..|+.+|+|.+...++.+..+.+ .|+++.|+++++++++.+++
T Consensus       154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~  230 (252)
T 4hxt_A          154 NIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQK  230 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHH
Confidence            99984 45567888999999999999974  5799999999999544447777888887 89999999999999999999


Q ss_pred             HHHHHHHHhhccCch
Q 048113          238 HAVAILLLICKSCRD  252 (339)
Q Consensus       238 ~a~~~L~~l~~~~~~  252 (339)
                      .|+++|.+++...+.
T Consensus       231 ~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          231 EAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHHcCCCc
Confidence            999999999976543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=5.8e-29  Score=216.93  Aligned_cols=238  Identities=19%  Similarity=0.277  Sum_probs=215.1

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchH
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKL  116 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~  116 (339)
                      ....+.+..+|++++++++..|+++|.++...+++++..+.+.|++|.|+.+|.+++++++..|+++|.+++. +++++.
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3468899999999999999999999976555478889999999999999999999999999999999999997 567788


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-HHHHhcCcHHHHHHHhhccccCchHHHH
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-SPIVSSGVTYCLLQLIHSSEKSSGLTEK  195 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  195 (339)
                      .+.+.|+++.|++++++           +++.++..|+++|.|++..++++ ..+.+.|+++.|+++|+++  +..++..
T Consensus        91 ~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~  157 (252)
T 4db8_A           91 AVIDAGALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQE  157 (252)
T ss_dssp             HHHHTTHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHH
Confidence            99999999999999999           79999999999999999988888 8899999999999999875  5789999


Q ss_pred             HHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113          196 AIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG  274 (339)
Q Consensus       196 a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~  274 (339)
                      |+++|+ +++. .++.+..+.+ .|+++.|+++++++++.+++.|+++|.+++..++ ..+..+.+.|+++.|++++.++
T Consensus       158 a~~~L~-~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~  234 (252)
T 4db8_A          158 ALWALS-NIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHE  234 (252)
T ss_dssp             HHHHHH-HHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HHHHHH-HHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCC
Confidence            999999 5554 6677777776 8999999999999999999999999999997654 4778889999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhc
Q 048113          275 TWRAKNMARDLLLLLRD  291 (339)
Q Consensus       275 ~~~~~~~A~~~L~~l~~  291 (339)
                      ++.+++.|+++|.+|+.
T Consensus       235 ~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          235 NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSHHHHTHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999999875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=243.11  Aligned_cols=311  Identities=16%  Similarity=0.211  Sum_probs=268.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.++++.+|..|+.+|.+++.+  ++..+.. .|+++.|+.+|.++ +++++..|+.+|.+|+. +++++..+.
T Consensus        17 ~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~   95 (644)
T 2z6h_A           17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIF   95 (644)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHH
Confidence            5789999999999999999999999987  7777776 48999999999875 89999999999999999 577999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|+++.|+.+|.++++.++..|+++|.|++.. +..+..+.+.|+++.|++++++           .++.++..++.+|
T Consensus        96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L  164 (644)
T 2z6h_A           96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL  164 (644)
T ss_dssp             TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-----------CCHHHHHHHHHHH
Confidence            999999999999999999999999999999975 4567788899999999999999           7888899999999


Q ss_pred             HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      ++++. +++++..+.+.|+++.|++++++.+ .+..+..++.+|. +++.+++++..+++ .|+++.|+.+++++++.++
T Consensus       165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~-nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~  241 (644)
T 2z6h_A          165 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV  241 (644)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHH-HHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHH
T ss_pred             HHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHH-HHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHH
Confidence            99997 7788999999999999999998863 5678899999999 78899999999997 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  316 (339)
                      +.++++|.+++...+.    .....+++|.|++++.+.++.+++.|+++|.+|+..+.. ........++++.++..+..
T Consensus       242 ~~a~~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~-~~~~v~~~g~v~~Lv~lL~~  316 (644)
T 2z6h_A          242 QNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR  316 (644)
T ss_dssp             HHHHHHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHHHc
Confidence            9999999999976432    112247899999999999999999999999999886532 12233456678888887764


Q ss_pred             cC--cccchHHHHHHHHHH
Q 048113          317 EG--DTVAGTTLRLVEEMI  333 (339)
Q Consensus       317 ~~--~~~~~~a~~~l~~~v  333 (339)
                      .+  ++++..|.+.|..+.
T Consensus       317 ~~~~~~v~~~a~~aL~nL~  335 (644)
T 2z6h_A          317 AGDREDITEPAICALRHLT  335 (644)
T ss_dssp             HTTCHHHHHHHHHHHHHHT
T ss_pred             cCCcHHHHHHHHHHHHHHh
Confidence            33  567777777777653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=5.2e-28  Score=238.75  Aligned_cols=300  Identities=20%  Similarity=0.230  Sum_probs=254.6

Q ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNG-ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+..|.++ +++++..|+.+|++++.+  ++..+.+.|+++.|+.+|+++++.++..|+++|.+++.+++..+..+.+
T Consensus        59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~  138 (644)
T 2z6h_A           59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL  138 (644)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence            4678888865 899999999999999876  8999999999999999999999999999999999999976778888999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .|++|.|+.+|.++++.++..++.+|.+++. +++++..+.+.|+++.|++++++.          .....+..++.+|+
T Consensus       139 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~----------~~~~~~~~a~~~L~  208 (644)
T 2z6h_A          139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK  208 (644)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC----------CCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC----------ChHHHHHHHHHHHH
Confidence            9999999999999999899999999999996 667789999999999999999884          46778889999999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhcc-------------------------------------ccCchHHHHHHHHHH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSS-------------------------------------EKSSGLTEKAIALLE  201 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------------------------------------~~~~~~~~~a~~~L~  201 (339)
                      ||+.+++++..+++.|+++.|+.++.+.                                     +.+..++..|+++|+
T Consensus       209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~  288 (644)
T 2z6h_A          209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  288 (644)
T ss_dssp             HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999888887776542                                     124567778888888


Q ss_pred             HhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-hHHHHHHHHHHHHhhccCch--hHHHHHHhcCChHHHHHhhhcCC-H
Q 048113          202 NIVSSSEDALQEIAATCGAIRALVETIEEG-S-PQCKEHAVAILLLICKSCRD--KYRSSILKEGVMPGLLQLSVDGT-W  276 (339)
Q Consensus       202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~i~~L~~ll~~~~-~  276 (339)
                      |+....++++..+.+ .|+++.|++++.+. + +.+++.|+.+|.+++...+.  ..+..+.+.|++|.|++++.+.+ +
T Consensus       289 ~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~  367 (644)
T 2z6h_A          289 NLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW  367 (644)
T ss_dssp             HHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred             HHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence            444445678888887 89999999999873 3 79999999999999975432  24566788999999999999875 7


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          277 RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       277 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      .++..|+++|.+|+.+...  +......++++.++..+.
T Consensus       368 ~v~~~a~~~L~nLa~~~~~--~~~i~~~~~i~~Lv~lL~  404 (644)
T 2z6h_A          368 PLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLV  404 (644)
T ss_dssp             HHHHHHHHHHHHHTTSGGG--HHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHH--HHHHHHcCCHHHHHHHHh
Confidence            9999999999999987653  344456677777777765

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.95  E-value=2.4e-27  Score=238.31  Aligned_cols=310  Identities=16%  Similarity=0.209  Sum_probs=265.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.++++.+|..|+.+|.+++.+  ++..+.+ .|+++.|+.+|+++ +++++..|+.+|.+|+. +++++..+.
T Consensus       153 p~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~  231 (780)
T 2z6g_A          153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIF  231 (780)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHH
Confidence            5688999999999999999999999985  6777775 58999999999865 89999999999999999 688899999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|+++.|+.+|.++++.++..|+++|.||+.. +..+..+.+.|+++.|++++.+           .+..++..++.+|
T Consensus       232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-----------~~~~v~~~a~~aL  300 (780)
T 2z6g_A          232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL  300 (780)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHHHHHH
Confidence            999999999999999999999999999999975 4557778889999999999998           7899999999999


Q ss_pred             HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      .+++. +++++..+++.|+++.|+.++++++ .......++.+|. +++.++.++..+++ .|+++.|+.++.++++.++
T Consensus       301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~-~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~  377 (780)
T 2z6g_A          301 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV  377 (780)
T ss_dssp             HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHH-HHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHH
T ss_pred             HHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHH-HhhcChHHHHHHHH-hchHHHHHHHHcCCchHHH
Confidence            99987 5788899999999999999999763 4667778899999 78888899999997 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  316 (339)
                      +.++++|.+++.....    .....+++|.|++++.+.++.++..|+++|.+|+..+.. ........++++.++..+..
T Consensus       378 ~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~  452 (780)
T 2z6g_A          378 QNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR  452 (780)
T ss_dssp             HHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHHc
Confidence            9999999999976432    112246899999999999999999999999999886532 12233456788888888864


Q ss_pred             cC--cccchHHHHHHHHH
Q 048113          317 EG--DTVAGTTLRLVEEM  332 (339)
Q Consensus       317 ~~--~~~~~~a~~~l~~~  332 (339)
                      .+  ++++..|.+.|.++
T Consensus       453 ~~~~~~v~~~Al~aL~nL  470 (780)
T 2z6g_A          453 AGDREDITEPAICALRHL  470 (780)
T ss_dssp             HTTCHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            33  36777787777755

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.95  E-value=3.6e-26  Score=229.72  Aligned_cols=300  Identities=20%  Similarity=0.234  Sum_probs=248.0

Q ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNG-ERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~-~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+..|.++ +++++..|+.+|++++..  ++..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++..+..+.+
T Consensus       195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~  274 (780)
T 2z6g_A          195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL  274 (780)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence            4577788754 999999999999999875  8888999999999999999999999999999999999976788888989


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .|+++.|+.+|.+++..++..++.+|.+++. +++++..+.+.|+++.|++++++.          .....+..++.+|+
T Consensus       275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----------~~~~~~~~a~~aL~  344 (780)
T 2z6g_A          275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK  344 (780)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC----------CCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----------CHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996 567788889999999999999884          45667778899999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhcc-------------------------------------ccCchHHHHHHHHHH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSS-------------------------------------EKSSGLTEKAIALLE  201 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------------------------------------~~~~~~~~~a~~~L~  201 (339)
                      +|+..+.++..+++.|+++.|+.++.+.                                     ..+..++..|+++|+
T Consensus       345 ~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~  424 (780)
T 2z6g_A          345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  424 (780)
T ss_dssp             HHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9998888888888888888777766442                                     124567788889999


Q ss_pred             HhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-hHHHHHHHHHHHHhhccCch--hHHHHHHhcCChHHHHHhhhcCC-H
Q 048113          202 NIVSSSEDALQEIAATCGAIRALVETIEEG-S-PQCKEHAVAILLLICKSCRD--KYRSSILKEGVMPGLLQLSVDGT-W  276 (339)
Q Consensus       202 n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~i~~L~~ll~~~~-~  276 (339)
                      |+....++++..+.+ .|+++.|+++|.+. + +.+++.|+++|.+|+...+.  ..+..+...|++|.|++++.+++ +
T Consensus       425 ~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~  503 (780)
T 2z6g_A          425 NLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW  503 (780)
T ss_dssp             HHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred             HHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence            443445677888886 89999999999873 3 48999999999999875433  13567888999999999998876 4


Q ss_pred             HHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH
Q 048113          277 RAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID  315 (339)
Q Consensus       277 ~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  315 (339)
                      .++..|+++|.+|+.+...  +......+.++.++..+.
T Consensus       504 ~v~~~A~~aL~nLa~~~~~--~~~i~~~g~i~~Lv~lL~  540 (780)
T 2z6g_A          504 PLIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLV  540 (780)
T ss_dssp             HHHHHHHHHHHHHHSSHHH--HHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHH--HHHHHHCCCHHHHHHHHH
Confidence            9999999999999976542  222334566677666664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.95  E-value=3.8e-27  Score=201.30  Aligned_cols=199  Identities=20%  Similarity=0.210  Sum_probs=175.3

Q ss_pred             CChHHHHHHhccCCH--HHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-Cccch
Q 048113           39 GIIAPLISMLCSQDY--EAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENK  115 (339)
Q Consensus        39 g~i~~Lv~lL~~~~~--~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~  115 (339)
                      -.++.++++|+++++  +++..|++++.+|+.++++++..+++.|+||.|+++|.++++++++.|+++|.||+. +++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            368999999999988  899999999999998789999999999999999999999999999999999999997 56789


Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc---c------
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS---S------  186 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~---~------  186 (339)
                      ..|.+.|+||.|+++|.+.          .+.++++.|+.+|+||+..+++|..|++. +++.|++++..   +      
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~----------~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~  156 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQT----------RDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDY  156 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred             HHHHHcCCHHHHHHHHccC----------CCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence            9999999999999999842          68999999999999999999999999874 69999987631   1      


Q ss_pred             -----ccCchHHHHHHHHHHHhhc-CCHhhhHHHHhhCCcHHHHHHHhhcC------ChHHHHHHHHHHHHhhcc
Q 048113          187 -----EKSSGLTEKAIALLENIVS-SSEDALQEIAATCGAIRALVETIEEG------SPQCKEHAVAILLLICKS  249 (339)
Q Consensus       187 -----~~~~~~~~~a~~~L~n~l~-~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~  249 (339)
                           ..+..++++|.++|. +++ .++++|+.+.+..|.|+.|+.+++.+      +.+.+|+|+.+|+||+..
T Consensus       157 ~~~~~~~~~~v~~na~~~L~-nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          157 PKANGLLDFDIFYNVTGCLR-NMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCCCTTCCHHHHHHHHHHHH-HHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccccchHHHHHHHHHHHH-HHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                 114588999999999 565 47799999998568899999999863      467899999999999854

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.95  E-value=7.7e-27  Score=199.39  Aligned_cols=202  Identities=18%  Similarity=0.154  Sum_probs=174.2

Q ss_pred             HHHHHHHcCCCH--HHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGER--ETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~--~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.||.+|.++++  +++..|+++|++++.+   +|..+.+.|+||+|+.+|+++++++|+.|+++|.+|+.++++++..|
T Consensus        11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I   90 (233)
T 3tt9_A           11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV   90 (233)
T ss_dssp             HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            678999999988  8899999999999975   89999999999999999999999999999999999999789999999


Q ss_pred             hhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCC-CCCC--CC--ccCCCCHHHHH
Q 048113           78 VKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGD-LADD--DN--SYGRISVQAKI  151 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~--~~--~~~~~~~~~~~  151 (339)
                      .+.|+||.|+++|. +++.++++.|+.+|+||+..+.+|..|.+ +++++|++++..+ ++|.  +.  ..++.++.++.
T Consensus        91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            99999999999998 46899999999999999999999998887 4799999876421 1111  11  12335889999


Q ss_pred             HHHHHHHhhcC-CCCChHHHHhc-CcHHHHHHHhhcc----ccCchHHHHHHHHHHHhhcC
Q 048113          152 DAIATLHNLST-CHQLISPIVSS-GVTYCLLQLIHSS----EKSSGLTEKAIALLENIVSS  206 (339)
Q Consensus       152 ~a~~~L~nLs~-~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~n~l~~  206 (339)
                      +|..+|+||+. ++++|+.|.+. |+|+.|+.+++.+    ..+.+.+++|+++|. +|+.
T Consensus       170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~-nLs~  229 (233)
T 3tt9_A          170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH-NLSY  229 (233)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHH-HHHh
Confidence            99999999988 55899999987 7899999999863    235688999999999 6664

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=4.7e-25  Score=186.87  Aligned_cols=199  Identities=21%  Similarity=0.329  Sum_probs=178.7

Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-Cccc
Q 048113           36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLEN  114 (339)
Q Consensus        36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~  114 (339)
                      ...|..+.|+.+|++++++++..|+++|.+++.++++++..+.+.|++|.|+.+|.+++++++..|+++|.|++. ++..
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            457899999999999999999999999999998788999999999999999999999999999999999999995 5567


Q ss_pred             hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113          115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT  193 (339)
Q Consensus       115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  193 (339)
                      +..+.+.|+++.|++++++           .++.++..|+++|+|++. +++.+..+.+.|+++.|+++++++  +..++
T Consensus        89 ~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~  155 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSS-----------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQIL  155 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcC-----------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHH
Confidence            8889999999999999999           799999999999999997 456667888999999999999975  57899


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      ..|+++|.|.+...++.+..+.+ .|+++.|+++++++++.+++.|+++|.+++.
T Consensus       156 ~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          156 QEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            99999999544445888888887 8999999999999999999999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=3.2e-24  Score=181.71  Aligned_cols=198  Identities=21%  Similarity=0.307  Sum_probs=177.1

Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      ..|+.+.|+.+|.+++++++..|+++|.+++. +++.+..+.+.|+++.|+++|++           .++.++..|+++|
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L   78 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-----------PNEQILQEALWAL   78 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----------SCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-----------CCHHHHHHHHHHH
Confidence            45789999999999999999999999999995 55678889999999999999998           7999999999999


Q ss_pred             HhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      .|++. +++++..+++.|+++.|+.+|+++  +..++..|+++|+|.....++.+..+.+ .|+++.|+++++++++.++
T Consensus        79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~  155 (210)
T 4db6_A           79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQIL  155 (210)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred             HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHH
Confidence            99996 668889999999999999999985  5799999999999544456777777876 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      +.|+++|.+++..++ ..+..+.+.|+++.|++++.++++.+++.|+++|.+|++
T Consensus       156 ~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          156 QEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            999999999998754 478888999999999999999999999999999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.2e-24  Score=206.86  Aligned_cols=317  Identities=14%  Similarity=0.110  Sum_probs=250.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcc------
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSER------   72 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~------   72 (339)
                      +.++.+|.+++.+.+..|++.|.-++.+  .|..+.+ .|.++.|+.++++ ++..+...++.+|.||+...+.      
T Consensus       337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~  416 (778)
T 3opb_A          337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX  416 (778)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence            5677888887777899999999999987  8888887 6679999999995 6778999999999999984331      


Q ss_pred             --------------------------------hhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113           73 --------------------------------NKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS  120 (339)
Q Consensus        73 --------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  120 (339)
                                                      ++..+.++|++|.|+.++.++++.+++.++++|.||+.++++|..+++
T Consensus       417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq  496 (778)
T 3opb_A          417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ  496 (778)
T ss_dssp             ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred             hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                            567788999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHhcCCCCCCCCccCCCCH---HHHHHHHHHHHhhcCCCCChHHHH--h-cCcHHHHHHHhhccccCc----
Q 048113          121 SGAIQRLVEILNGDLADDDNSYGRISV---QAKIDAIATLHNLSTCHQLISPIV--S-SGVTYCLLQLIHSSEKSS----  190 (339)
Q Consensus       121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~---~~~~~a~~~L~nLs~~~~~~~~i~--~-~g~i~~Lv~ll~~~~~~~----  190 (339)
                      .|+++.|+.++.+           ...   ..+..|+.+|.+++.+.+....+.  . .|++++|+.+|..++...    
T Consensus       497 qGal~~LL~lL~s-----------~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l  565 (778)
T 3opb_A          497 QGAVKIILEYLAN-----------KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL  565 (778)
T ss_dssp             TTHHHHHHHHTTC-----------C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred             CCCHHHHHHHHhc-----------CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence            9999999999988           333   378999999999986555444332  1 399999999998321111    


Q ss_pred             --------hHHHHHHHHHHHhhcCCH-----hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHH-H
Q 048113          191 --------GLTEKAIALLENIVSSSE-----DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYR-S  256 (339)
Q Consensus       191 --------~~~~~a~~~L~n~l~~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~  256 (339)
                              .-+..|+.+|. |++..+     +.|..++.+.|+++.|.++|.++++.++..|+++++||+.+. . .+ +
T Consensus       566 ~~~~~~~~l~~feAL~ALT-NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e-~i~~  642 (778)
T 3opb_A          566 HNDEQIKLTDNYEALLALT-NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-L-TIAA  642 (778)
T ss_dssp             --CCCCCHHHHHHHHHHHH-HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-G-GTGG
T ss_pred             cccccccHHHHHHHHHHHH-HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-H-HHHH
Confidence                    12668999999 566654     457778862389999999999999999999999999999753 2 32 2


Q ss_pred             HHHhc------CChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhh-hHHHHHHHHHHHh--cCcccchHHHH
Q 048113          257 SILKE------GVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLK-NELVEQIMQEIDA--EGDTVAGTTLR  327 (339)
Q Consensus       257 ~~~~~------g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~a~~  327 (339)
                      .+...      +.++.|+.++.+++.++|+.|+++|.+++...+.. -+..+. .++++.++..+..  +.++++..+..
T Consensus       643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~  721 (778)
T 3opb_A          643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-AKELLTKKELIENAIQVFADQIDDIELRQRLLM  721 (778)
T ss_dssp             GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-HHHHHHccccHHHHHHHHhccCCCHHHHHHHHH
Confidence            33321      23889999999999999999999999997543321 122333 3677777777764  67778888888


Q ss_pred             HHHHHHH
Q 048113          328 LVEEMIA  334 (339)
Q Consensus       328 ~l~~~v~  334 (339)
                      ++.+++.
T Consensus       722 ~l~NL~~  728 (778)
T 3opb_A          722 LFFGLFE  728 (778)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8888774

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-22  Score=197.60  Aligned_cols=256  Identities=16%  Similarity=0.176  Sum_probs=204.1

Q ss_pred             HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChh---HHHHHHHHHHH
Q 048113           31 QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTT---LIELTVAAMLI  107 (339)
Q Consensus        31 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~~L~n  107 (339)
                      ++..+.+.|+++.|+.+++++++.+++.|+++|.++|. ++++|..+++.|+++.|+.++.+.+..   .+..|+.+|.+
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999998 799999999999999999999988644   89999999999


Q ss_pred             HhcCccchHHHH---hcchHHHHHHHhcCCCCCCCCc---cCCCCHHHHHHHHHHHHhhcCCCC-----ChHHHHhc-Cc
Q 048113          108 LSSCLENKLEIA---SSGAIQRLVEILNGDLADDDNS---YGRISVQAKIDAIATLHNLSTCHQ-----LISPIVSS-GV  175 (339)
Q Consensus       108 Ls~~~~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~~---~~~~~~~~~~~a~~~L~nLs~~~~-----~~~~i~~~-g~  175 (339)
                      ++...+....+.   ..|+|++|+.+|...+.-..+.   ....+...+..|+.+|.||+..++     .+..|+.. |+
T Consensus       528 Llis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga  607 (778)
T 3opb_A          528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY  607 (778)
T ss_dssp             HHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred             HHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence            996444333332   1489999999998311000000   000112347789999999998763     37888885 99


Q ss_pred             HHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh-HHHHhh-----CCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113          176 TYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL-QEIAAT-----CGAIRALVETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       176 i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                      ++.|..+|.+.  +..+++.|+.+++ |++.+++++ ..+.+.     .+.++.|+.++++++..++..|+++|.+++..
T Consensus       608 ~~~L~~LL~s~--n~~VrrAA~elI~-NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          608 WSTIENLMLDE--NVPLQRSTLELIS-NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHGGGCS--SHHHHHHHHHHHH-HHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHH-HHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            99999999874  5789999999999 677788765 344321     12488999999999999999999999999765


Q ss_pred             CchhHHHHHHhc-CChHHHHHhhhc--CCHHHHHHHHHHHHHHhc
Q 048113          250 CRDKYRSSILKE-GVMPGLLQLSVD--GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       250 ~~~~~~~~~~~~-g~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~  291 (339)
                      ++. ....+.+. ++++.++.++.+  .++.++.+++.++.|+..
T Consensus       685 ~~~-ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          685 IPL-IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             CHH-HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             ChH-HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            443 66777775 899999999999  899999999999999996

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=2.2e-22  Score=178.91  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhh
Q 048113           14 RETQIQAANELGKLSRR--QKHKLVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVL   90 (339)
Q Consensus        14 ~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL   90 (339)
                      .+.+..|+..|.+++.+  +...|.+.|++++|+. +|++++++++..|+++|++++.+++..+..+++.|++|.|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            36788899999999986  8888899999999999 99999999999999999999998899999999999999999999


Q ss_pred             cCC-ChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCCh
Q 048113           91 QCQ-STTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLI  167 (339)
Q Consensus        91 ~~~-~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~  167 (339)
                      .++ ++.++..|+++|.|++.+. +....+.+.|+++.|+.+|++           .+..++..|+++|.+++. +++.+
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----------~d~~v~~~A~~aLs~L~~~~~~~~  202 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----------QVQKLKVKSAFLLQNLLVGHPEHK  202 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHhCChHHH
Confidence            964 7889999999999999754 456778889999999999999           899999999999999987 67788


Q ss_pred             HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHH----HHHhhc-C-ChHHHHHHHH
Q 048113          168 SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRAL----VETIEE-G-SPQCKEHAVA  241 (339)
Q Consensus       168 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~L----v~lL~~-~-~~~~~~~a~~  241 (339)
                      ..+++.|+++.|+.+|.++  +.++++.|+.+|.|.+...+............+..+    ++-++. . +.++.+.+..
T Consensus       203 ~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~  280 (296)
T 1xqr_A          203 GTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEK  280 (296)
T ss_dssp             HHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            9999999999999999985  579999999999955454444444433211112222    233331 1 3455666666


Q ss_pred             HHHHhh
Q 048113          242 ILLLIC  247 (339)
Q Consensus       242 ~L~~l~  247 (339)
                      ++.++.
T Consensus       281 il~~~f  286 (296)
T 1xqr_A          281 LLQTCF  286 (296)
T ss_dssp             HHHHHC
T ss_pred             HHHHHc
Confidence            665554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=4.5e-22  Score=176.83  Aligned_cols=184  Identities=16%  Similarity=0.190  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHH
Q 048113           53 YEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEI  130 (339)
Q Consensus        53 ~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~l  130 (339)
                      .+.+..|+..|..++. +.++...+.+.|++|.|+. +|.++++.++..|+++|.|++.++ .++..+.+.|++++|+++
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3678899999999999 6889999999999999999 999999999999999999999755 568889999999999999


Q ss_pred             hcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHh
Q 048113          131 LNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSED  209 (339)
Q Consensus       131 l~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~  209 (339)
                      |+++          .+..++..|+++|.|++.+ ++....+.+.|+++.|+.+|+++  +..++..|+++|+|.+..+++
T Consensus       133 L~~~----------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~  200 (296)
T 1xqr_A          133 LDRD----------ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPE  200 (296)
T ss_dssp             HHHC----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGG
T ss_pred             HccC----------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChH
Confidence            9863          4789999999999999985 55677888999999999999985  589999999999965566778


Q ss_pred             hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113          210 ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       210 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  250 (339)
                      .+..+++ .|+++.|+.+|.++++.+++.++.+|.+++...
T Consensus       201 ~~~~vv~-~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          201 HKGTLCS-MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             GHHHHHH-TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHH-cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            8888887 899999999999999999999999999999774

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.74  E-value=5.7e-16  Score=147.51  Aligned_cols=316  Identities=15%  Similarity=0.160  Sum_probs=235.2

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcc-------
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSER-------   72 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~-------   72 (339)
                      +.|++++. +.-.+.|..|+..|+.++++++..+ ..++++.|+..|+.+  |.++...++.+|.++...+++       
T Consensus        24 ~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~  102 (651)
T 3grl_A           24 QKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENS  102 (651)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            45777787 4567899999999999998766554 467789999999775  889999999999887664332       


Q ss_pred             ----------hhhHHh-hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--chHHHH-hcchHHHHHHHhcCCCCCC
Q 048113           73 ----------NKIRIV-KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--NKLEIA-SSGAIQRLVEILNGDLADD  138 (339)
Q Consensus        73 ----------~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~-~~g~i~~Lv~ll~~~~~~~  138 (339)
                                +...+. +.+.++.|+.+|++.+..++..++.+|..|+...+  .+..|. ..++|+.|+.+|.+     
T Consensus       103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-----  177 (651)
T 3grl_A          103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-----  177 (651)
T ss_dssp             -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-----
T ss_pred             cccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-----
Confidence                      122333 45889999999999999999999999999986543  467777 56999999999998     


Q ss_pred             CCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhc-CcHHHHHHHhhccc--cCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113          139 DNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSSE--KSSGLTEKAIALLENIVSSSEDALQEIA  215 (339)
Q Consensus       139 ~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~n~l~~~~~~~~~i~  215 (339)
                            ....+|..++..|.+|+.+....+.++.. |+++.|++++....  +...+...|+.++.|++..++.|+..+.
T Consensus       178 ------~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          178 ------SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             ------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ------chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence                  78999999999999999987777776666 99999999997732  1346789999999977778888988888


Q ss_pred             hhCCcHHHHHHHhhcCChH------HHHH---HHHHHHHhhccCc-----hhHHHHHHhcCChHHHHHhhhcC--CHHHH
Q 048113          216 ATCGAIRALVETIEEGSPQ------CKEH---AVAILLLICKSCR-----DKYRSSILKEGVMPGLLQLSVDG--TWRAK  279 (339)
Q Consensus       216 ~~~g~i~~Lv~lL~~~~~~------~~~~---a~~~L~~l~~~~~-----~~~~~~~~~~g~i~~L~~ll~~~--~~~~~  279 (339)
                      + .|+++.|..+++.+.+.      ...+   +..++.-|+..+.     ..++..+.+.|+++.|++++...  ...++
T Consensus       252 E-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~  330 (651)
T 3grl_A          252 E-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL  330 (651)
T ss_dssp             H-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred             H-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence            7 89999999999754321      2223   5566666665432     23677889999999999998765  67788


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhh---------HHHHHHHHHHH--hcCcccchHHHHHHHHHH
Q 048113          280 NMARDLLLLLRDCSSFGSRSKQLKN---------ELVEQIMQEID--AEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       280 ~~A~~~L~~l~~~~~~~~~~~~~~~---------~~~~~i~~~~~--~~~~~~~~~a~~~l~~~v  333 (339)
                      ..|..++..+.+++..  .++.+..         ..+-.++..+.  ...-++|-.|..++++.+
T Consensus       331 ~~Al~tla~~irgN~~--~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          331 TETINTVSEVIRGCQV--NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHHHHHHHHHHTTCHH--HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHH--HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            9999999887766542  2333321         22222222221  223445666777777765

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.59  E-value=1.5e-13  Score=131.01  Aligned_cols=278  Identities=18%  Similarity=0.190  Sum_probs=209.1

Q ss_pred             cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccc
Q 048113           38 RGIIAPLISMLCSQ-DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLEN  114 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~  114 (339)
                      ...|+.|+.-+++. -.+-|+.|+..|..+++.   .+ .-+..++++.|+..|+..  |.++...++.+|.++-..++.
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            44577777766554 678899999999999983   33 334577899999999875  788999999999998653321


Q ss_pred             ------------------h-HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CC-ChHHHHhc
Q 048113          115 ------------------K-LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQ-LISPIVSS  173 (339)
Q Consensus       115 ------------------~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~-~~~~i~~~  173 (339)
                                        . ..+.+.+.|+.|+.+|++           .+..++.+++..|..|+.. ++ ..+.|..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-----------~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~  164 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-----------FDFHVRWPGVKLLTSLLKQLGPQVQQIILVS  164 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHS
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-----------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhC
Confidence                              0 123367899999999998           8999999999999999874 44 67888877


Q ss_pred             -CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCC----hHHHHHHHHHHHHhhc
Q 048113          174 -GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGS----PQCKEHAVAILLLICK  248 (339)
Q Consensus       174 -g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~  248 (339)
                       ++++.|+.+|.+.  ++.++..++..|. .++.+....++++.-+|+++.|+++++...    ..+.+.++.+|.+|..
T Consensus       165 p~gi~~Lv~lL~d~--rE~iRneallLL~-~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr  241 (651)
T 3grl_A          165 PMGVSRLMDLLADS--REVIRNDGVLLLQ-ALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK  241 (651)
T ss_dssp             TTHHHHHHGGGGCS--SHHHHHHHHHHHH-HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHhCc--hHHHHHHHHHHHH-HHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence             9999999999974  5889999999999 566665555555544799999999998733    4778889999999999


Q ss_pred             cCchhHHHHHHhcCChHHHHHhhhcCC------HHHH---HHHHHHHHHHhccCCC----cchh-hhhhhHHHHHHHHHH
Q 048113          249 SCRDKYRSSILKEGVMPGLLQLSVDGT------WRAK---NMARDLLLLLRDCSSF----GSRS-KQLKNELVEQIMQEI  314 (339)
Q Consensus       249 ~~~~~~~~~~~~~g~i~~L~~ll~~~~------~~~~---~~A~~~L~~l~~~~~~----~~~~-~~~~~~~~~~i~~~~  314 (339)
                      .++. .+..+.+.|.+|.|..++..+.      ++..   ..+..+++.|...+..    ..++ ...+.+++..+++..
T Consensus       242 ~N~s-NQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll  320 (651)
T 3grl_A          242 NNNS-NQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL  320 (651)
T ss_dssp             TCHH-HHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCHH-HHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence            8754 7888999999999999986432      2222   3366677777664321    1122 234567777777776


Q ss_pred             HhcC--cccchHHHHHHHHHHH
Q 048113          315 DAEG--DTVAGTTLRLVEEMIA  334 (339)
Q Consensus       315 ~~~~--~~~~~~a~~~l~~~v~  334 (339)
                      ...+  ++++..|.+.+++++.
T Consensus       321 ~~~~~p~~i~~~Al~tla~~ir  342 (651)
T 3grl_A          321 MATGVPADILTETINTVSEVIR  342 (651)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHHHHHHHHHh
Confidence            6665  5667778888888764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.52  E-value=1.6e-12  Score=114.44  Aligned_cols=224  Identities=12%  Similarity=0.062  Sum_probs=172.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.|+..|.++++.+|..|++.|.++.        ..+.++.|+.+|+++++.++..|+++|..+... +....     ..
T Consensus        26 ~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~-----~l   91 (280)
T 1oyz_A           26 DELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED-----NV   91 (280)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH-----HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch-----HH
Confidence            56889999999999999999998765        345688899999999999999999999998762 22111     12


Q ss_pred             hHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           83 VPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        83 i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      ++.|.. ++.++++.++..++++|.++....+.    .....++.|+..+.+           .++.++..|+.+|.++.
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d-----------~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFD-----------KSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhC-----------CCHHHHHHHHHHHHhcC
Confidence            344442 45677899999999999998742221    123468999999988           79999999999999875


Q ss_pred             CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                      .          .++++.|+.++.++  +..++..|+.+|+ .+...         ...+++.|+.+++++++.++..|+.
T Consensus       157 ~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~-~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~  214 (280)
T 1oyz_A          157 D----------KATIPLLINLLKDP--NGDVRNWAAFAIN-INKYD---------NSDIRDCFVEMLQDKNEEVRIEAII  214 (280)
T ss_dssp             ------------CCHHHHHHHHTCS--SHHHHHHHHHHHH-HHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCC--CHHHHHHHHHHHH-hhccC---------cHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            3          24899999999874  5788999999999 55321         1246788999999999999999999


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      +|..+..   +         .++|.|++.+.+++  ++..|..+|..+..
T Consensus       215 aL~~~~~---~---------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          215 GLSYRKD---K---------RVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             HHHHTTC---G---------GGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             HHHHhCC---H---------hhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence            9998862   1         36888999888754  78888888877743

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.49  E-value=1.8e-12  Score=131.61  Aligned_cols=312  Identities=11%  Similarity=0.092  Sum_probs=212.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE-------RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI   75 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~   75 (339)
                      +.|+..+.++++..+..|+.+|..++.+....+..       ..+++.+++.+++.++.+|..|+++|..+....+.. .
T Consensus       131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~-~  209 (852)
T 4fdd_A          131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA-L  209 (852)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH-H
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH-H
Confidence            45778888999999999999999999873333321       336777777888889999999999999888743321 1


Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                      .-.-.+.++.+...+.+++++++..++.+|.+++...+.  +..+  .+.++.+++.+++           .++.++..|
T Consensus       210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~-----------~~~~vr~~a  276 (852)
T 4fdd_A          210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQD-----------QDENVALEA  276 (852)
T ss_dssp             HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTC-----------SSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccC-----------CcHHHHHHH
Confidence            111125678888888889999999999999999864432  1211  2478888888887           789999999


Q ss_pred             HHHHHhhcCCCCChHHHHh--cCcHHHHHHHhh----------cc--c--------cCchHHHHHHHHHHHhhcCCHhhh
Q 048113          154 IATLHNLSTCHQLISPIVS--SGVTYCLLQLIH----------SS--E--------KSSGLTEKAIALLENIVSSSEDAL  211 (339)
Q Consensus       154 ~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~----------~~--~--------~~~~~~~~a~~~L~n~l~~~~~~~  211 (339)
                      +.++..++.....+..+..  ...++.++..+.          ..  +        ..-.++..+..+|. .++....  
T Consensus       277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~-~la~~~~--  353 (852)
T 4fdd_A          277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD-VLANVYR--  353 (852)
T ss_dssp             HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH-HHHHHHG--
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHH-HHHHhcc--
Confidence            9999999875533332211  135666666662          11  0        11245777777777 4543322  


Q ss_pred             HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          212 QEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       212 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ..+..  ..++.+.+.+.+++...++.|+.++.+++...+.....  .-.+++|.|+..+.+.++.++..|++++..++.
T Consensus       354 ~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~--~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          354 DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP--YLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            12332  46777788888889999999999999999765332111  124678999999999999999999999999887


Q ss_pred             cCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113          292 CSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      ..... .....-...++.++..+.-...+++..|...+..+++..
T Consensus       430 ~~~~~-~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          430 WVVSQ-PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             HHHHS-CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             Hhccc-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            42100 111223445555554443234566777877777776543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.46  E-value=8e-12  Score=105.25  Aligned_cols=190  Identities=16%  Similarity=0.140  Sum_probs=156.6

Q ss_pred             hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113           37 ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL  116 (339)
Q Consensus        37 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~  116 (339)
                      ..+.++.|+.+|+++++.++..|+..|..+..           .++++.|+.++.++++.++..++.+|..+..      
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            46789999999999999999999999988755           2578999999999999999999999988642      


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                          .+.++.|+.++.+           .++.++..|+.+|..+..          .+.++.|+.++.++  +..++..|
T Consensus        80 ----~~~~~~L~~~l~~-----------~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a  132 (211)
T 3ltm_A           80 ----ERAVEPLIKALKD-----------EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAA  132 (211)
T ss_dssp             ----GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHH
T ss_pred             ----HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHH
Confidence                4578999999988           799999999999998843          25789999999764  57899999


Q ss_pred             HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH
Q 048113          197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW  276 (339)
Q Consensus       197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  276 (339)
                      +.+|+ .+.          . ...++.|..+++++++.++..++.+|..+..   +         .+++.|.+++.++++
T Consensus       133 ~~aL~-~~~----------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~  188 (211)
T 3ltm_A          133 AFALG-EIG----------D-ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTG  188 (211)
T ss_dssp             HHHHH-HHC----------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCH
T ss_pred             HHHHH-HcC----------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCH
Confidence            99999 442          1 4578999999999999999999999999852   2         257889999999999


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 048113          277 RAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       277 ~~~~~A~~~L~~l~~~~~  294 (339)
                      .++..|..+|..+.....
T Consensus       189 ~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          189 FARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhcCCCCC
Confidence            999999999998876543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.45  E-value=7.3e-12  Score=104.64  Aligned_cols=182  Identities=20%  Similarity=0.183  Sum_probs=154.7

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      .+.++..|.++++.+|..|+..|..+.        ..+.++.|+.+|.++++.++..|+.+|..+..           .+
T Consensus        16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~   76 (201)
T 3ltj_A           16 VEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ER   76 (201)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GG
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HH
Confidence            367899999999999999999997654        35788999999999999999999999988864           25


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      +++.|+.+|.++++.++..|+++|.++..          ...++.|+.++.+           .++.++..|+.+|..+.
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-----------EDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhC
Confidence            78999999999999999999999988643          3578999999988           79999999999999984


Q ss_pred             CCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          162 TCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       162 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                      .          .+.++.|..++.+.  +..++..|+.+|+ .+.           ...+++.|..+++++++.++..|..
T Consensus       136 ~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~-~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~  191 (201)
T 3ltj_A          136 D----------ERAVEPLIKALKDE--DGWVRQSAADALG-EIG-----------GERVRAAMEKLAETGTGFARKVAVN  191 (201)
T ss_dssp             C----------GGGHHHHHHHTTCS--SHHHHHHHHHHHH-HHC-----------SHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCC--CHHHHHHHHHHHH-HhC-----------chhHHHHHHHHHhCCCHHHHHHHHH
Confidence            2          35788999999874  5789999999999 441           1346788999999999999999999


Q ss_pred             HHHHhh
Q 048113          242 ILLLIC  247 (339)
Q Consensus       242 ~L~~l~  247 (339)
                      +|..+.
T Consensus       192 aL~~l~  197 (201)
T 3ltj_A          192 YLETHK  197 (201)
T ss_dssp             HHHHCC
T ss_pred             HHHHHH
Confidence            998874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=6e-12  Score=106.00  Aligned_cols=184  Identities=20%  Similarity=0.179  Sum_probs=153.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.|+..|.++++.+|..|+..|..+.        ..+.++.|+.+|.++++.++..|+++|..+..           .+.
T Consensus        22 ~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~   82 (211)
T 3ltm_A           22 EMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERA   82 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHH
Confidence            57889999999999999999997653        35789999999999999999999999998864           357


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      ++.|+.+|.++++.++..|+.+|.++..          .+.++.|+.++.+           .++.++..|+.+|.++..
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-----------EDWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999988743          3578999999988           799999999999999842


Q ss_pred             CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHH
Q 048113          163 CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAI  242 (339)
Q Consensus       163 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~  242 (339)
                                ...++.|..++.+.  +..++..++.+|+ .+..           ..+++.|..+++++++.++..|..+
T Consensus       142 ----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~-~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~a  197 (211)
T 3ltm_A          142 ----------ERAVEPLIKALKDE--DGWVRQSAADALG-EIGG-----------ERVRAAMEKLAETGTGFARKVAVNY  197 (211)
T ss_dssp             ----------GGGHHHHHHHTTCS--SHHHHHHHHHHHH-HHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCC--CHHHHHHHHHHHH-HhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence                      24788999999764  5789999999999 4421           3567889999999999999999999


Q ss_pred             HHHhhccC
Q 048113          243 LLLICKSC  250 (339)
Q Consensus       243 L~~l~~~~  250 (339)
                      |.++....
T Consensus       198 L~~~~~~~  205 (211)
T 3ltm_A          198 LETHKSFN  205 (211)
T ss_dssp             HHC-----
T ss_pred             HHhcCCCC
Confidence            99987654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.44  E-value=2.9e-11  Score=106.41  Aligned_cols=199  Identities=10%  Similarity=0.021  Sum_probs=157.4

Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch
Q 048113           36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK  115 (339)
Q Consensus        36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~  115 (339)
                      ...+.++.|+..|+++++.++..|+++|..+..           .++++.|+.++.++++.++..|+++|.++...+...
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            457899999999999999999999999998873           246889999999999999999999999887533321


Q ss_pred             HHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113          116 LEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT  193 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  193 (339)
                      .     ..++.|.+ ++.+           .++.++..++.+|.++.. ++..     ...+++.|+..+.+.  +..++
T Consensus        89 ~-----~l~~~L~~~~~~d-----------~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~--~~~vR  145 (280)
T 1oyz_A           89 D-----NVFNILNNMALND-----------KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK--STNVR  145 (280)
T ss_dssp             H-----HHHHHHHHHHHHC-----------SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS--CHHHH
T ss_pred             h-----HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC--CHHHH
Confidence            1     13444543 3455           789999999999999864 2211     224678899999874  57889


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113          194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD  273 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~  273 (339)
                      ..|+.+|+ .+.          . .++++.|+.+++++++.++..|+.+|..+.... +         .+++.|.+++.+
T Consensus       146 ~~a~~aL~-~~~----------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~---------~~~~~L~~~l~d  203 (280)
T 1oyz_A          146 RATAFAIS-VIN----------D-KATIPLLINLLKDPNGDVRNWAAFAININKYDN-S---------DIRDCFVEMLQD  203 (280)
T ss_dssp             HHHHHHHH-TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-H---------HHHHHHHHHTTC
T ss_pred             HHHHHHHH-hcC----------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-H---------HHHHHHHHHhcC
Confidence            99999999 432          1 468999999999999999999999999985332 2         257889999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 048113          274 GTWRAKNMARDLLLLLR  290 (339)
Q Consensus       274 ~~~~~~~~A~~~L~~l~  290 (339)
                      .++.++..|+.+|..+.
T Consensus       204 ~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          204 KNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             SCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999998875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.44  E-value=8.2e-12  Score=120.91  Aligned_cols=301  Identities=11%  Similarity=0.179  Sum_probs=205.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +.+..++.++++.+|..|+.+|..++.. ... ......++.+..+++++++.+|..|+.+|..++...+..   .....
T Consensus       167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~  242 (588)
T 1b3u_A          167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEAL  242 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHH
Confidence            3455666788999999999999999876 222 224567888889999999999999999999988743321   22335


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhc
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLS  161 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs  161 (339)
                      .+|.+..++++++..+|..++.+|..++..-..  .......++.+++++++           .++.++..|+.+|..++
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~~~  309 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD-----------CEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC-----------SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHHH
Confidence            788888888888899999999999998853211  12234578999999988           79999999999999987


Q ss_pred             CCC--CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113          162 TCH--QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA  239 (339)
Q Consensus       162 ~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a  239 (339)
                      ..-  +.+....-...++.+..++++.  +..++..++.+|. .++..-. .....  ...++.+..++++.++.++..+
T Consensus       310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~-~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a  383 (588)
T 1b3u_A          310 ENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIM-GLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNI  383 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGG-GGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHH
T ss_pred             HHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH-HHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHH
Confidence            632  2222122345678888888764  5788888888887 4542211 11122  3477888889988888999999


Q ss_pred             HHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-
Q 048113          240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-  318 (339)
Q Consensus       240 ~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  318 (339)
                      +.++..++...+..   . .....+|.|.+++.+.++.++..++.++..++..-.    ........++.++..+ .|+ 
T Consensus       384 ~~~l~~l~~~~~~~---~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l-~d~~  454 (588)
T 1b3u_A          384 ISNLDCVNEVIGIR---Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG----VEFFDEKLNSLCMAWL-VDHV  454 (588)
T ss_dssp             HTTCHHHHHHSCHH---H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC----GGGCCHHHHHHHHHGG-GCSS
T ss_pred             HHHHHHHHHhcCHH---H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHh-cCCc
Confidence            98888887543321   1 223467888888888888888888888887765321    1112223333333322 333 


Q ss_pred             cccchHHHHHHHHHHHH
Q 048113          319 DTVAGTTLRLVEEMIAK  335 (339)
Q Consensus       319 ~~~~~~a~~~l~~~v~~  335 (339)
                      ..++..|...+..++..
T Consensus       455 ~~Vr~~a~~~l~~l~~~  471 (588)
T 1b3u_A          455 YAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34566677766666554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.41  E-value=2.3e-11  Score=101.60  Aligned_cols=186  Identities=16%  Similarity=0.139  Sum_probs=156.7

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHH
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE  117 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~  117 (339)
                      .+..+.++++|+++++.++..|+.+|..+..           .+.++.|+.+|.++++.++..|+.+|..+..       
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            4567889999999999999999999998765           2578999999999999999999999987642       


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHH
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI  197 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~  197 (339)
                         .+.++.|+.++.+           .++.++..|+.+|..+..          ..+++.|+.++.+.  +..++..|+
T Consensus        75 ---~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~  128 (201)
T 3ltj_A           75 ---ERAVEPLIKALKD-----------EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAA  128 (201)
T ss_dssp             ---GGGHHHHHHHTTC-----------SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--CHHHHHHHH
Confidence               3578999999988           799999999999998743          24788999999764  578999999


Q ss_pred             HHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHH
Q 048113          198 ALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWR  277 (339)
Q Consensus       198 ~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  277 (339)
                      .+|+ .+.          . .+.++.|+.+++++++.++..|+.+|..+..   +         .+++.|.+++.+.++.
T Consensus       129 ~aL~-~~~----------~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~---------~~~~~L~~~l~d~~~~  184 (201)
T 3ltj_A          129 FALG-EIG----------D-ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGF  184 (201)
T ss_dssp             HHHH-HHT----------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHH
T ss_pred             HHHH-HhC----------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHH
Confidence            9999 442          2 4688999999999999999999999999842   2         1578899999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 048113          278 AKNMARDLLLLLRD  291 (339)
Q Consensus       278 ~~~~A~~~L~~l~~  291 (339)
                      ++..|..+|..+..
T Consensus       185 vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          185 ARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987743

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.38  E-value=1.8e-11  Score=118.54  Aligned_cols=259  Identities=10%  Similarity=0.069  Sum_probs=184.2

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113            7 DNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV   85 (339)
Q Consensus         7 ~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~   85 (339)
                      .++.++++.+|..|+.+|.+++.. ... ....-.++.+..+.+++++..|..|+.++..++...+..    .....+|.
T Consensus        94 ~l~~~~~~~vR~~a~~~L~~l~~~~~~~-~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~  168 (588)
T 1b3u_A           94 SLATVEETVVRDKAVESLRAISHEHSPS-DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY  168 (588)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHTTSCHH-HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHH
Confidence            334678889999999999998876 222 122335666667777788889999999999888743321    23346788


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCC
Q 048113           86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQ  165 (339)
Q Consensus        86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~  165 (339)
                      +..++.++++.+|..|+.+|..++..-...  ......+|.+..++.+           ++..++..|+.+|..++..-.
T Consensus       169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d-----------~~~~vr~~a~~~l~~l~~~~~  235 (588)
T 1b3u_A          169 FRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD-----------EQDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC-----------SCHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHhCC
Confidence            888888889999999999999998644322  2235678888888887           789999999999999875321


Q ss_pred             ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHH
Q 048113          166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLL  245 (339)
Q Consensus       166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  245 (339)
                      .  ......+++.+..++.+.  +..++..++.+|+ .+...... ....  ...++.++++++++++.++..|+.+|..
T Consensus       236 ~--~~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~-~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~  307 (588)
T 1b3u_A          236 Q--EDLEALVMPTLRQAAEDK--SWRVRYMVADKFT-ELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             H--HHHHHHTHHHHHHHHTCS--SHHHHHHHHHTHH-HHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHHccCC--CHHHHHHHHHHHH-HHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            1  112234677777777663  5678889988888 45432111 1122  4678999999999999999999999999


Q ss_pred             hhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          246 ICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       246 l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ++...+...+....-...+|.+..++.+.++.++..++++|..++.
T Consensus       308 ~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP  353 (588)
T ss_dssp             HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred             HHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9875443222222334567888888888888888888877766654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.34  E-value=8e-11  Score=119.50  Aligned_cols=266  Identities=15%  Similarity=0.075  Sum_probs=184.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--   79 (339)
                      .++..+.++++++|..|+++|..++......+..  .++++.++..+++.+++++..|+..+..++.. +..+..+..  
T Consensus       219 ~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~~~~~~~  297 (852)
T 4fdd_A          219 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ-PICKDVLVRHL  297 (852)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TTHHHHHTTTH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hhHHHHHHHHH
Confidence            4566677899999999999999999873232322  35788888888889999999999999999983 433332211  


Q ss_pred             cCChHHHHHhh-----------cC-----------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCC
Q 048113           80 SGIVPVLLEVL-----------QC-----------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLAD  137 (339)
Q Consensus        80 ~g~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~  137 (339)
                      ...+|.++..+           ..           .+..++..|..+|..++...+.  .+ -...++.+...+.+    
T Consensus       298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~----  370 (852)
T 4fdd_A          298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFH----  370 (852)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcC----
Confidence            13466666666           22           1124688888999888853321  11 12467788888877    


Q ss_pred             CCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhh--hHHHH
Q 048113          138 DDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDA--LQEIA  215 (339)
Q Consensus       138 ~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~--~~~i~  215 (339)
                             .++.++..|+.+|.+++........-.-.++++.++..+.+.  +..++..|+.+++ .++..-..  .....
T Consensus       371 -------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~-~l~~~~~~~~~~~~~  440 (852)
T 4fdd_A          371 -------HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVRSITCWTLS-RYAHWVVSQPPDTYL  440 (852)
T ss_dssp             -------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHH-HTHHHHHHSCTTTTH
T ss_pred             -------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHH-HHHHHhccchHHHHH
Confidence                   789999999999999987543211111236788888888774  5789999999999 55532111  11122


Q ss_pred             hhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          216 ATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       216 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                        .+.++.|++.+.++++.++..|+++|.+++...+......+  .+.++.|+..+..........+..++..+..
T Consensus       441 --~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          441 --KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence              25778888889888999999999999999865333221211  3577888888887777776667777777764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.29  E-value=3.1e-11  Score=117.62  Aligned_cols=181  Identities=12%  Similarity=0.113  Sum_probs=131.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.+...|.+.++.+|.+|+.++.++...+...+.+.+.++.+..+|+++++.++..|+.+|..++.++++....-...+.
T Consensus       124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~  203 (591)
T 2vgl_B          124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN  203 (591)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence            34778888999999999999999998753333344578899999999999999999999999999965543211112245


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      ++.|+..+...++-.+...+.++..+...++..    ....++.+..++++           .++.++..|++++.++..
T Consensus       204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~-----------~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          204 INKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSH-----------ANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCS-----------STTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcC-----------CChHHHHHHHHHHHHHhh
Confidence            677888887788888888888777766432211    23467788888887           788999999999999874


Q ss_pred             ----CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH
Q 048113          163 ----CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN  202 (339)
Q Consensus       163 ----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n  202 (339)
                          +++....+. ..+.+.|+.++.+   +..++..++.+|..
T Consensus       269 ~~~~~~~~~~~~~-~~~~~~L~~L~~~---d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          269 LLPKDSDYYNMLL-KKLAPPLVTLLSG---EPEVQYVALRNINL  308 (591)
T ss_dssp             SCCBTTBSHHHHH-HHTHHHHHHHTTS---CHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHH-HHHHHHHHHHhcC---CccHHHHHHHHHHH
Confidence                233333332 3456777766642   47888888888883

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.26  E-value=2e-10  Score=116.33  Aligned_cols=314  Identities=10%  Similarity=0.121  Sum_probs=205.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-hHHhh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-IRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~~i~~   79 (339)
                      .+...+.+.+|..|..|+.++..++.. ....+..  ..+++.++..+++.++.+|..++++++.++...+..- ..-.-
T Consensus       373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  452 (861)
T 2bpt_A          373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL  452 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence            455666788999999999999999864 2222211  3578888999999999999999999999987321110 00011


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc------cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL------ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                      ...+|.++..+.++ +.++..+++++.+++..-      .....+  ...++.|++.+.+.+         .+..++..+
T Consensus       453 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d---------~~~~vr~~a  520 (861)
T 2bpt_A          453 PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRID---------NEFNARASA  520 (861)
T ss_dssp             HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSC---------CGGGHHHHH
T ss_pred             HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcC---------cchHHHHHH
Confidence            24578888888775 889999999999987521      112222  356888888887521         346789999


Q ss_pred             HHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcc-------------ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113          154 IATLHNLST-CHQLISPIVSSGVTYCLLQLIHSS-------------EKSSGLTEKAIALLENIVSSSEDALQEIAATCG  219 (339)
Q Consensus       154 ~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g  219 (339)
                      +.+|..+.. .++....... ..++.+++.+.+.             +....++..++.+|.+.+...+.......  ..
T Consensus       521 ~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~  597 (861)
T 2bpt_A          521 FSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DM  597 (861)
T ss_dssp             HHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HH
T ss_pred             HHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HH
Confidence            999999976 3332222222 3666777776532             11234666788888844433333222222  24


Q ss_pred             cHHHHHHHhhcCCh-HHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcch
Q 048113          220 AIRALVETIEEGSP-QCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSR  298 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~  298 (339)
                      .++.++..+++.+. .+++.+..++..++...+......+-  ..+|.|.+.+.+.++.++..|..++..+......  .
T Consensus       598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~  673 (861)
T 2bpt_A          598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--D  673 (861)
T ss_dssp             HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--G
T ss_pred             HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--h
Confidence            67788888888766 88999999998887654333333332  3788899888888888999999999888765321  2


Q ss_pred             hhhhhhHHHHHHHHHHHhcC--cccchHHHHHHHHHHHHh
Q 048113          299 SKQLKNELVEQIMQEIDAEG--DTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       299 ~~~~~~~~~~~i~~~~~~~~--~~~~~~a~~~l~~~v~~~  336 (339)
                      ........+..++..+....  .+++..|...+..++...
T Consensus       674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~  713 (861)
T 2bpt_A          674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence            22223444444444443222  557778888888777654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.25  E-value=1.1e-10  Score=109.60  Aligned_cols=272  Identities=14%  Similarity=0.105  Sum_probs=186.4

Q ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHHHH-HHHHH--hcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhh
Q 048113            3 EMLMDNLLNG--ERETQIQAANELGKLSRRQ-KHKLV--ERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKI   75 (339)
Q Consensus         3 ~~Lv~~L~s~--~~~~~~~a~~~L~~l~~~~-~~~i~--~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~   75 (339)
                      +.|+..+.++  ++..+..|+.+|..++... ...+.  -..+++.+...++++  ++.+|..|++++.++....+.+-.
T Consensus       131 ~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~  210 (462)
T 1ibr_B          131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD  210 (462)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4577788888  9999999999999999862 11111  134777888888887  799999999999987652121110


Q ss_pred             -HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           76 -RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        76 -~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                       .....-.++.+...+.+++++++..++.+|..+......  ...+ ..+.++.++..++.           .+..++..
T Consensus       211 ~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~-----------~~~~v~~~  278 (462)
T 1ibr_B          211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS-----------DIDEVALQ  278 (462)
T ss_dssp             SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC-----------SSHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC-----------CchHHHHH
Confidence             111111466677777788899999999999999853322  2222 11677888888877           78999999


Q ss_pred             HHHHHHhhcCCC------------------CChHHHHh---cCcHHHHHHHhhcc-----ccCchHHHHHHHHHHHhhcC
Q 048113          153 AIATLHNLSTCH------------------QLISPIVS---SGVTYCLLQLIHSS-----EKSSGLTEKAIALLENIVSS  206 (339)
Q Consensus       153 a~~~L~nLs~~~------------------~~~~~i~~---~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~n~l~~  206 (339)
                      |+..+..++...                  .....+++   ...+|.+++.+.+.     +++...+..|..+|. .++.
T Consensus       279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~-~l~~  357 (462)
T 1ibr_B          279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM-LLAT  357 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH-HHHH
Confidence            999988887532                  01111221   23566677777542     122467788888888 4443


Q ss_pred             CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchh-HHHHHHhcCChHHHHHhhhcCCHHHHHHHHHH
Q 048113          207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDK-YRSSILKEGVMPGLLQLSVDGTWRAKNMARDL  285 (339)
Q Consensus       207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~  285 (339)
                      .-.  ..+.  ..+++.+...+.+++...++.|+.++..++.....+ ....  -..++|.++..+.+.++.+|..|+++
T Consensus       358 ~~~--~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--l~~~~~~l~~~l~d~~~~Vr~~a~~~  431 (462)
T 1ibr_B          358 CCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQAMPTLIELMKDPSVVVRDTAAWT  431 (462)
T ss_dssp             HTT--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT--TTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             hcc--HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            221  1233  246777778888888999999999999999754321 1111  15689999999999999999999999


Q ss_pred             HHHHhccC
Q 048113          286 LLLLRDCS  293 (339)
Q Consensus       286 L~~l~~~~  293 (339)
                      |..++..-
T Consensus       432 l~~~~~~~  439 (462)
T 1ibr_B          432 VGRICELL  439 (462)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHhc
Confidence            99998743

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.21  E-value=3.9e-09  Score=106.99  Aligned_cols=315  Identities=13%  Similarity=0.092  Sum_probs=206.3

Q ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchh-
Q 048113            3 EMLMDNLLNG--ERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNK-   74 (339)
Q Consensus         3 ~~Lv~~L~s~--~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~-   74 (339)
                      +.|+..+.++  ++..|..++.++..++.. ....+..  ..+++.+...+.++  ++.+|..|++++..+...-+.+- 
T Consensus       131 ~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~  210 (876)
T 1qgr_A          131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD  210 (876)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577788888  999999999999999976 3333332  44667777778776  68999999999999876322211 


Q ss_pred             hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-c-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-N-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      ........++.+...+.+++++++..++.+|..+..... . ... .....++.++..+.+           .++.++..
T Consensus       211 ~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~-----------~~~~v~~~  278 (876)
T 1qgr_A          211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKS-----------DIDEVALQ  278 (876)
T ss_dssp             SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHH-HTTTHHHHHHHHHTC-----------SSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhcC-----------CchHHHHH
Confidence            111112357777778878888999999999999985332 2 222 233678888887776           78899999


Q ss_pred             HHHHHHhhcCCC-------------------CChHHHH--hcCcHHHHHHHhhcc-----ccCchHHHHHHHHHHHhhcC
Q 048113          153 AIATLHNLSTCH-------------------QLISPIV--SSGVTYCLLQLIHSS-----EKSSGLTEKAIALLENIVSS  206 (339)
Q Consensus       153 a~~~L~nLs~~~-------------------~~~~~i~--~~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~n~l~~  206 (339)
                      |+..+.+++...                   .....+.  -...++.+++.+...     +++...+..|..+|. .++.
T Consensus       279 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~-~l~~  357 (876)
T 1qgr_A          279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM-LLAT  357 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHH-HHHH
Confidence            999988886531                   0001110  023566777777532     123467777777777 4543


Q ss_pred             CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHH
Q 048113          207 SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLL  286 (339)
Q Consensus       207 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L  286 (339)
                      ...  ..+.  ..+++.+...+.+.+..+++.++.++..++....++..... -...+|.|+..+.+.++.++..|+++|
T Consensus       358 ~~~--~~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l  432 (876)
T 1qgr_A          358 CCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTV  432 (876)
T ss_dssp             HHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HCc--HhhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            221  1223  24667777778888899999999999999976542211111 234899999999999999999999999


Q ss_pred             HHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113          287 LLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       287 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      ..++............-...++.++..+ .+..+++..|...+..++...
T Consensus       433 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~~~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          433 GRICELLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HHHHHHCGGGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCchhcccHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHh
Confidence            9998753210001122334445444443 233556666777777776543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.17  E-value=3.6e-10  Score=111.85  Aligned_cols=208  Identities=12%  Similarity=0.126  Sum_probs=150.6

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcC--ccc
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSC--LEN  114 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~--~~~  114 (339)
                      .+.|.++++.|++++++.|..|+.+|.+|+. ++..+..+...|+|+.++. +|.+++.+++..|+++|.||+..  .+.
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3456678888999999999999999999998 7999999999999887654 78888999999999999999964  355


Q ss_pred             hHHHHhcchHHHHHHHhcCCCC-CCCC--ccCCC-------CHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHh
Q 048113          115 KLEIASSGAIQRLVEILNGDLA-DDDN--SYGRI-------SVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLI  183 (339)
Q Consensus       115 ~~~i~~~g~i~~Lv~ll~~~~~-~~~~--~~~~~-------~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll  183 (339)
                      +..+...|++++|..++++... ....  .....       -.++..+++.+|++||. +++....+...|.++.|+..|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            7788899999999999864200 0000  00000       12355678899999987 556667888889999999998


Q ss_pred             hcccc-CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHH--HHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          184 HSSEK-SSGLTEKAIALLENIVSSSEDALQEIAATCGAIR--ALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       184 ~~~~~-~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                      .+.+. ..++...|+.+|.+....+++....+.+ .+...  .++..+...+...+..++++|.|+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            65432 3578899999999433445566666665 45322  2222233344455677889999874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.16  E-value=2.7e-10  Score=112.71  Aligned_cols=197  Identities=11%  Similarity=0.066  Sum_probs=148.7

Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH-HhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE-ILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      +.+.+++..|+++++..|..|+++|.||+.++..+..+...++|..++. +|.+           .+.+++..|+++|.|
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-----------~~~~Vr~~A~gaLrn  102 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-----------NNIDSRAAGWEILKV  102 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-----------SCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-----------CCHHHHHHHHHHHHH
Confidence            3455677889999999999999999999998888888888998888765 5666           799999999999999


Q ss_pred             hcCC--CCChHHHHhcCcHHHHHHHhhcccc------------C-------chHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113          160 LSTC--HQLISPIVSSGVTYCLLQLIHSSEK------------S-------SGLTEKAIALLENIVSSSEDALQEIAATC  218 (339)
Q Consensus       160 Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~------------~-------~~~~~~a~~~L~n~l~~~~~~~~~i~~~~  218 (339)
                      |+..  .+.+..++..|++++|..+++....            .       ..+...++.+|.+++....+....+.. .
T Consensus       103 L~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~  181 (684)
T 4gmo_A          103 LAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-K  181 (684)
T ss_dssp             HHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-C
T ss_pred             HHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-c
Confidence            9874  4678899999999999999865210            0       123456677777433445666667776 7


Q ss_pred             CcHHHHHHHhhcC---ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHh--hhcCCHHHHHHHHHHHHHHh
Q 048113          219 GAIRALVETIEEG---SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQL--SVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       219 g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~l--l~~~~~~~~~~A~~~L~~l~  290 (339)
                      +.++.|+..|.+.   ...++..|+.+|..++.++.+ ..+.+.+.+....+..+  +...+...+..++++|.|+.
T Consensus       182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLK-VGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHH-HHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            9999999988643   367899999999999988754 66777776644332222  23344445778889998875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.15  E-value=4.5e-09  Score=102.84  Aligned_cols=261  Identities=13%  Similarity=0.106  Sum_probs=173.4

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP   84 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~   84 (339)
                      |.+-|.++++.+|..|+++|+++...  . + -..+++.+..+|++.++.+|..|+.++.++...+|+...     +.++
T Consensus       112 l~kDL~~~n~~vr~lAL~~L~~i~~~--~-~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~  182 (618)
T 1w63_A          112 IKNDLNHSTQFVQGLALCTLGCMGSS--E-M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLP  182 (618)
T ss_dssp             HHHHHSCSSSHHHHHHHHHHHHHCCH--H-H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGG
T ss_pred             HHHhcCCCCHhHHHHHHHHHHhcCCH--H-H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHH
Confidence            55667788999999999999888743  1 1 135678888999999999999999999999986554332     6788


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhcCccc-hHHHHhcchHHHHHHHhcCCC---CCCCCc-cCCCCHHHHHHHHHHHHh
Q 048113           85 VLLEVLQCQSTTLIELTVAAMLILSSCLEN-KLEIASSGAIQRLVEILNGDL---ADDDNS-YGRISVQAKIDAIATLHN  159 (339)
Q Consensus        85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~---~~~~~~-~~~~~~~~~~~a~~~L~n  159 (339)
                      .+..+|.+.++.++..|+.+|..++..++. ...+  ...+|.++++|.+..   .-.+.. .+..++-.+...+.+|..
T Consensus       183 ~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~  260 (618)
T 1w63_A          183 ATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI  260 (618)
T ss_dssp             GTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence            888999999999999999999999865432 1122  256888888775310   000000 112478888889999999


Q ss_pred             hcCCCCChHHHHhcCcHHHHHHHhhccc----cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHH
Q 048113          160 LSTCHQLISPIVSSGVTYCLLQLIHSSE----KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQC  235 (339)
Q Consensus       160 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~----~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  235 (339)
                      ++..+...    .....+.|..++...+    .+..+...|+.++. .+...+.    +..  .++..|..++.++++.+
T Consensus       261 l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~-~l~~~~~----l~~--~a~~~L~~~L~~~d~~v  329 (618)
T 1w63_A          261 LGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIM-DIKSESG----LRV--LAINILGRFLLNNDKNI  329 (618)
T ss_dssp             HTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHH-HSCCCHH----HHH--HHHHHHHHHHTCSSTTT
T ss_pred             hCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-hcCCCHH----HHH--HHHHHHHHHHhCCCCch
Confidence            88643211    1234455555553211    12356666777777 4544332    221  35677777787777888


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          236 KEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       236 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      +..|+.+|..++...+     .+. ....+.++..+.+.+..++..|..+|..+.+..
T Consensus       330 r~~aL~~L~~i~~~~p-----~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~  381 (618)
T 1w63_A          330 RYVALTSLLKTVQTDH-----NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN  381 (618)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHHHHhhCH-----HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence            8888888887775421     112 124556666777777777777777777776654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.14  E-value=6e-09  Score=101.97  Aligned_cols=292  Identities=12%  Similarity=0.105  Sum_probs=199.3

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      .+.+...|.+.++.+|.+|+.++.++...+...+  .+.++.+..+|.+.++.++..|+.+|..++..+++....+  ..
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~  219 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RK  219 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HH
Confidence            3567888899999999999999999988633222  2678888889999999999999999999998544432223  25


Q ss_pred             ChHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113           82 IVPVLLEVLQC---------------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS  146 (339)
Q Consensus        82 ~i~~Lv~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~  146 (339)
                      .+|.++.+|.+               +++-.+...+.+|..+...++..    .....+.|..++....     ...+.+
T Consensus       220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~-----~~~~~~  290 (618)
T 1w63_A          220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTE-----TSKNVG  290 (618)
T ss_dssp             THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSC-----CSSTHH
T ss_pred             HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccc-----cccchH
Confidence            78888887753               36778888889999988654321    1224555555554210     000035


Q ss_pred             HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113          147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE  226 (339)
Q Consensus       147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~  226 (339)
                      ..+...|++++.++...+.    +.. .+++.|..++.+.  +..++..|+.+|. .+...   ....+.  ...+.++.
T Consensus       291 ~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~--d~~vr~~aL~~L~-~i~~~---~p~~~~--~~~~~i~~  357 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNN--DKNIRYVALTSLL-KTVQT---DHNAVQ--RHRSTIVD  357 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCS--STTTHHHHHHHHH-HHHHH---HHHHHG--GGHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCC--CCchHHHHHHHHH-HHHhh---CHHHHH--HHHHHHHH
Confidence            6788899999998754322    222 4678888888874  5788999999998 44432   223443  46778889


Q ss_pred             HhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHH
Q 048113          227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNEL  306 (339)
Q Consensus       227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~  306 (339)
                      .+.+++..++..|+.+|..++....  . ..     .++.|.+.+.+.+...+..+...+..++..-.  .    .....
T Consensus       358 ~l~d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~--~----~~~~~  423 (618)
T 1w63_A          358 CLKDLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYA--P----SKRWH  423 (618)
T ss_dssp             GGGSSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC--C----CHHHH
T ss_pred             HccCCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC--c----cHHHH
Confidence            9999999999999999999986532  2 22     35778888888999999999999988876321  0    11233


Q ss_pred             HHHHHHHHHhcCcccchHHHHHHHHHH
Q 048113          307 VEQIMQEIDAEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       307 ~~~i~~~~~~~~~~~~~~a~~~l~~~v  333 (339)
                      +..++..+...|+.++..+-..+..++
T Consensus       424 v~~ll~lL~~~~~~v~~~~~~~l~~ii  450 (618)
T 1w63_A          424 IDTIMRVLTTAGSYVRDDAVPNLIQLI  450 (618)
T ss_dssp             HHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            444444444445444444444444443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.13  E-value=1.7e-09  Score=109.55  Aligned_cols=315  Identities=11%  Similarity=0.102  Sum_probs=197.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHH--HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-hHHhh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKL--VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-IRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i--~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-~~i~~   79 (339)
                      .+...+.+.+|.+|..|+.++..++.+ ....+  .-..+++.++..++++++.+|..|+++|.+++...+..- ..-.-
T Consensus       370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l  449 (876)
T 1qgr_A          370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL  449 (876)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred             HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence            455667789999999999999998865 21111  124578899999999999999999999999998533210 00011


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc----------------chHHHHhcchHHHHHHHhcCCCCCCCCccC
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE----------------NKLEIASSGAIQRLVEILNGDLADDDNSYG  143 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  143 (339)
                      ...++.|+..+.++ +.++..++++|.+++..-.                ....+  ...++.|+..+.....       
T Consensus       450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~-------  519 (876)
T 1qgr_A          450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG-------  519 (876)
T ss_dssp             HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS-------
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCc-------
Confidence            24677888888775 8899999999999884311                11111  3578888888876310       


Q ss_pred             CCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhcc---------ccC----chHHHHHHHHHHHhhcCCH-
Q 048113          144 RISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSS---------EKS----SGLTEKAIALLENIVSSSE-  208 (339)
Q Consensus       144 ~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~---------~~~----~~~~~~a~~~L~n~l~~~~-  208 (339)
                       ++..++..++.++..+... +....... ...++.++..+...         +.+    .+++..++.++...+...+ 
T Consensus       520 -~~~~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~  597 (876)
T 1qgr_A          520 -HQNNLRSSAYESLMEIVKNSAKDCYPAV-QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH  597 (876)
T ss_dssp             -CSTTHHHHHHHHHHHHHHTCCSTTHHHH-HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred             -chhhHHHHHHHHHHHHHHHCchhhHHHH-HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh
Confidence             2346777888888888653 33222222 24566666665531         111    2345667777773333333 


Q ss_pred             hhhHHHHhhCCcHHHHHHHhhcCC--hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHH
Q 048113          209 DALQEIAATCGAIRALVETIEEGS--PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDL  285 (339)
Q Consensus       209 ~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~  285 (339)
                      .......  ...++.++.++++.+  ..+++.++.++..++...+......+-  ..+|.|...+.+. ++.++..|.++
T Consensus       598 ~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vr~~a~~~  673 (876)
T 1qgr_A          598 QDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNYAEYQVCLAAVGL  673 (876)
T ss_dssp             HHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             hhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcCcchHHHHHHHHHH
Confidence            2222233  246788888888754  478899999998887643222222222  3678888888886 89999999999


Q ss_pred             HHHHhccCCCcchhhhhhhHHHHHHHHHHHh--cCcccchHHHHHHHHHHHHh
Q 048113          286 LLLLRDCSSFGSRSKQLKNELVEQIMQEIDA--EGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       286 L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~a~~~l~~~v~~~  336 (339)
                      +..|......  +-.......+..++..+..  ...+++..+...+..++..+
T Consensus       674 l~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~  724 (876)
T 1qgr_A          674 VGDLCRALQS--NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI  724 (876)
T ss_dssp             HHHHHHHHGG--GGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--hhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh
Confidence            9888764320  1112224444444444432  13467778888888877654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.13  E-value=3.1e-09  Score=99.56  Aligned_cols=310  Identities=13%  Similarity=0.117  Sum_probs=198.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCC-cchhhHHhh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGS-ERNKIRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~-~~~~~~i~~   79 (339)
                      .|+..|.+.++.+ ..++.++..++.. ... -...+.++.|+..+.++  ++..+..|+.+|..++... +..-... -
T Consensus        94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~  170 (462)
T 1ibr_B           94 YVLQTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-S  170 (462)
T ss_dssp             HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-H
T ss_pred             HHHHHhCCCCchh-hHHHHHHHHHHHHhccc-cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-H
Confidence            4566677777677 7788888888765 221 01367888899999888  8999999999999999732 2211111 1


Q ss_pred             cCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCcc-c-hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLE-N-KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~-~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      ...++.++..+.++  ++.++..|+.++.++...-. . .......-.++.+...+.+           .+..++..++.
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~vr~~~~~  239 (462)
T 1ibr_B          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-----------PDTRVRVAALQ  239 (462)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-----------SSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----------CCHHHHHHHHH
Confidence            24678888999887  78999999999998764211 1 0001111245666666665           78999999999


Q ss_pred             HHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHH------------------HHh
Q 048113          156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQE------------------IAA  216 (339)
Q Consensus       156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~------------------i~~  216 (339)
                      +|..++. .++.-......++++.++..+++.  ++.++..++..+. .++........                  +.+
T Consensus       240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (462)
T 1ibr_B          240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS-NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK  316 (462)
T ss_dssp             HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHH-HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHH-HHHHHHHHHHHhcccccccCCCccchhHHHHH
Confidence            9999975 322111112225677777777663  5788888888877 45433211000                  100


Q ss_pred             --hCCcHHHHHHHhhc-------CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 048113          217 --TCGAIRALVETIEE-------GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLL  287 (339)
Q Consensus       217 --~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~  287 (339)
                        -...+|.+++.+..       ++..++..|+.+|..++...+...    . ..++|.+.+.+.+.++..|..|+.++.
T Consensus       317 ~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~----~-~~~~~~l~~~l~~~~~~~r~aal~~l~  391 (462)
T 1ibr_B          317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPDWRYRDAAVMAFG  391 (462)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH----H-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHH----H-HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence              01355666666643       234678889999999886543211    1 246778888888999999999999999


Q ss_pred             HHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113          288 LLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      .++.+.... .-...-...++.++..+.-....++..|...|..+...+
T Consensus       392 ~l~~~~~~~-~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          392 CILEGPEPS-QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HTSSSSCTT-TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHhcCCcHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            998754310 111122344554444443233567888888888887655

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.13  E-value=2.9e-09  Score=107.71  Aligned_cols=303  Identities=12%  Similarity=0.139  Sum_probs=192.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCc-chhhHHhhcCChHHHHHhhc
Q 048113           13 ERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSE-RNKIRIVKSGIVPVLLEVLQ   91 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~~i~~~g~i~~Lv~lL~   91 (339)
                      ++..|..|..+|..++......+. ...++.+...+.+.+...++.|+.+++.++.+.. ..-.... ...++.++..+.
T Consensus       344 ~~~~r~~a~~~L~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~  421 (861)
T 2bpt_A          344 DWNVSMSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMN  421 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGG
T ss_pred             cCcHHHHHHHHHHHHHHHccHhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcC
Confidence            467899999999999876211111 2345566667778899999999999999998532 2111122 247888999999


Q ss_pred             CCChhHHHHHHHHHHHHhcCccch--HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-C----
Q 048113           92 CQSTTLIELTVAAMLILSSCLENK--LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-H----  164 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nLs~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~----  164 (339)
                      ++++.++..+++++..++..-...  ..-.-...++.+++.+++           . +.++..|+++|.+++.. .    
T Consensus       422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-----------~-~~v~~~a~~al~~l~~~~~~~~~  489 (861)
T 2bpt_A          422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-----------H-PKVATNCSWTIINLVEQLAEATP  489 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-----------C-HHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-----------C-hHHHHHHHHHHHHHHHhcccccc
Confidence            899999999999999988531110  000123467888888866           4 88999999999998763 1    


Q ss_pred             CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-------------
Q 048113          165 QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-------------  231 (339)
Q Consensus       165 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-------------  231 (339)
                      +...... ..+++.|++.+.+.+.+..++..++.+++......+........  ..++.+++.+...             
T Consensus       490 ~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~  566 (861)
T 2bpt_A          490 SPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDA  566 (861)
T ss_dssp             CGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred             hhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhH
Confidence            1111111 24577888888754333678888888888444334333333332  4667777776531             


Q ss_pred             --ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH-HHHHHHHHHHHHHhccCCCcchhhhhhhHHHH
Q 048113          232 --SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW-RAKNMARDLLLLLRDCSSFGSRSKQLKNELVE  308 (339)
Q Consensus       232 --~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~  308 (339)
                        ...++..++.+|..++...+......+  ...++.+...+.+.++ .+++.+..++..++.....  .....-...++
T Consensus       567 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~  642 (861)
T 2bpt_A          567 QSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSP  642 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence              345677888898888865443222111  2467778888888776 8889999988888764321  12122234444


Q ss_pred             HHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113          309 QIMQEIDAEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       309 ~i~~~~~~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      .++..+..+..+++..|..++..++..+
T Consensus       643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          643 YLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             HHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            4444443334555666777776666543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.11  E-value=1.1e-08  Score=99.58  Aligned_cols=254  Identities=12%  Similarity=0.084  Sum_probs=180.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP   84 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~   84 (339)
                      ++.++.+.+...|.-+.-++..++....+..  .-++..+.+.|+++++.+|..|+++|+++..  ++....     .++
T Consensus        54 vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~  124 (591)
T 2vgl_B           54 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEY-----LCE  124 (591)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHH-----HHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHH-----HHH
Confidence            5566678888888888777777766422221  2345677777888999999999999998874  333222     357


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC
Q 048113           85 VLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH  164 (339)
Q Consensus        85 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~  164 (339)
                      .+.+++.++++.+|..|+.++.++....+.  .+.+.+.++.+..+|.+           .++.++..|+.+|..++...
T Consensus       125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d-----------~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIAD-----------SNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSC-----------SCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCC-----------CChhHHHHHHHHHHHHHhhC
Confidence            899999999999999999999999864332  23345789999999987           89999999999999998754


Q ss_pred             -CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113          165 -QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL  243 (339)
Q Consensus       165 -~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  243 (339)
                       +....-...+.+..|++.+.+.  ++-.+...+.++. .+...++   ...  ...++.+..++++.++.+...|+.++
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~-~l~~~~~---~~~--~~~l~~l~~~l~~~~~~V~~ea~~~i  263 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLS-NYNPKDD---REA--QSICERVTPRLSHANSAVVLSAVKVL  263 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHH-TSCCCSH---HHH--HHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred             CCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHH-HhCCCCh---HHH--HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence             3211111124566777777654  3556677778888 5543321   111  24677788888888999999999999


Q ss_pred             HHhhcc---CchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          244 LLICKS---CRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       244 ~~l~~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ..+...   +++..+ .+ -..+.++|+.++. +++.+|..|+..|..+..
T Consensus       264 ~~l~~~~~~~~~~~~-~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~  311 (591)
T 2vgl_B          264 MKFLELLPKDSDYYN-ML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQ  311 (591)
T ss_dssp             HHSCCSCCBTTBSHH-HH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCHHHHH-HH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence            998742   222122 22 2346788887664 788999999998888865

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.86  E-value=3.3e-08  Score=104.14  Aligned_cols=227  Identities=15%  Similarity=0.112  Sum_probs=155.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchh-----hHH
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNK-----IRI   77 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-----~~i   77 (339)
                      .|+..|.+.++.+|..|+.+|..++.. ....  -..+++.|+..+.++++.+|..|+.+|..++...+...     ..-
T Consensus        52 ~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~  129 (1230)
T 1u6g_C           52 MILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN  129 (1230)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence            466777889999999999999999875 2111  13466778888888888999999999999886432210     111


Q ss_pred             hhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           78 VKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                      .-...+|.|+..+. ++++..+..|+.++..++..  +.....  -...++.++..+.+           .++.++..|+
T Consensus       130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~-----------~~~~vR~~a~  196 (1230)
T 1u6g_C          130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTS-----------PRLAVRKRTI  196 (1230)
T ss_dssp             HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGC-----------SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcC-----------CcHHHHHHHH
Confidence            12357899999998 57889999999999998842  111111  14467778888877           6889999999


Q ss_pred             HHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC-CHhhhHHHHhhCCcHHHHHHHhhcCCh
Q 048113          155 ATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS-SEDALQEIAATCGAIRALVETIEEGSP  233 (339)
Q Consensus       155 ~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~  233 (339)
                      .+|..++......  + -...++.++..+.+.. +...+..++.++. .+.. .+..-....  ...++.+++.+.+.++
T Consensus       197 ~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~-~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~  269 (1230)
T 1u6g_C          197 IALGHLVMSCGNI--V-FVDLIEHLLSELSKND-SMSTTRTYIQCIA-AISRQAGHRIGEYL--EKIIPLVVKFCNVDDD  269 (1230)
T ss_dssp             HHHHHHTTTC-------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHH-HHHHHSSGGGTTSC--TTHHHHHHHHHSSCCT
T ss_pred             HHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC-chhHHHHHHHHHH-HHHHHhHHHHHHHH--HHHHHHHHHHhcCCCH
Confidence            9999998643221  1 1246888888887642 2344555666666 3322 221111111  3678899999988888


Q ss_pred             HHHHHHHHHHHHhhccCch
Q 048113          234 QCKEHAVAILLLICKSCRD  252 (339)
Q Consensus       234 ~~~~~a~~~L~~l~~~~~~  252 (339)
                      .+++.++.++..++...+.
T Consensus       270 ~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          270 ELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             TTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHChH
Confidence            8999999999888875443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.83  E-value=1.3e-06  Score=85.40  Aligned_cols=264  Identities=13%  Similarity=0.112  Sum_probs=174.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.+-|.++++.+|..|+++|+++....    .-..+++.+.+.|  .+.++.+|..|+.++..+...+|+   .+...+.
T Consensus       116 l~kDl~~~n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~  188 (621)
T 2vgl_A          116 IKNDLASRNPTFMGLALHCIANVGSRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDW  188 (621)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSC
T ss_pred             HHHhcCCCCHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhH
Confidence            344567889999999999998886431    1235677888888  888999999999999999985443   2223588


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHH----HHhcCC-CCCCCCc-cCCCCHHHHHHHHHH
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLV----EILNGD-LADDDNS-YGRISVQAKIDAIAT  156 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv----~ll~~~-~~~~~~~-~~~~~~~~~~~a~~~  156 (339)
                      ++.+..+|.++++.++..|+.++..++..++.  .+  ...+|.++    +++... .+..+.. ++..++-.+...+..
T Consensus       189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l  264 (621)
T 2vgl_A          189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL  264 (621)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH
Confidence            99999999988999999999999998864432  11  12344444    444321 0000000 112267788889999


Q ss_pred             HHhhcCCC--CChHHHHhcCcHHHHHHHhhccc---------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113          157 LHNLSTCH--QLISPIVSSGVTYCLLQLIHSSE---------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALV  225 (339)
Q Consensus       157 L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~---------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv  225 (339)
                      |..++..+  +.+..+.+  .++.++..+.+.+         ....+...|..++. .+...++    +..  .++..|.
T Consensus       265 l~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~-~l~~~~~----~~~--~~~~~L~  335 (621)
T 2vgl_A          265 LQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLII-HHDSEPN----LLV--RACNQLG  335 (621)
T ss_dssp             GGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHH-HHCCCHH----HHH--HHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHH-hcCCcHH----HHH--HHHHHHH
Confidence            98887632  33333333  3444443332211         01256666777777 5553332    222  3667888


Q ss_pred             HHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhcc
Q 048113          226 ETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       226 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~  292 (339)
                      .++.++++.++..++.+|..++...+.  ...+  ....+.++..+. +.++.++..|..+|..+.+.
T Consensus       336 ~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          336 QFLQHRETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHhcCCCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            889888899999999999999876532  1222  235677777777 88899999999999888754

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.79  E-value=9.3e-07  Score=86.37  Aligned_cols=262  Identities=13%  Similarity=0.122  Sum_probs=173.7

Q ss_pred             cHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            2 EEMLMDNL--LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         2 ~~~Lv~~L--~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      .+.+...|  .+.++.+|.+|+-++..+...+...+...+.++.+.++|.+.++.++..|+.++..++..++...     
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----  222 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----  222 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----
Confidence            45677888  78999999999999999988644444345899999999999999999999999999988544321     


Q ss_pred             cCChHHHHHhhc----CC-------------ChhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCCCCC
Q 048113           80 SGIVPVLLEVLQ----CQ-------------STTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLADDDN  140 (339)
Q Consensus        80 ~g~i~~Lv~lL~----~~-------------~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~  140 (339)
                      ...+|.+++.|.    .+             ++-.+...+..|..+...++  .+..+.  +.++.++..+.... .++ 
T Consensus       223 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~-ks~-  298 (621)
T 2vgl_A          223 KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP-KSK-  298 (621)
T ss_dssp             TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC-SCS-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc-ccc-
Confidence            123455554332    21             35577777777777664322  122221  23444443322100 000 


Q ss_pred             ccCCC--CHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhC
Q 048113          141 SYGRI--SVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATC  218 (339)
Q Consensus       141 ~~~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~  218 (339)
                      ...+.  ...+...++.++..+...++...     .++..|..++.+.  +..++..++..|. .+....... ..+.  
T Consensus       299 ~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~--~~niry~aL~~l~-~l~~~~~~~-~~~~--  367 (621)
T 2vgl_A          299 KVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHR--ETNLRYLALESMC-TLASSEFSH-EAVK--  367 (621)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCS--CHHHHHHHHHHHH-HHTTCTTTH-HHHH--
T ss_pred             cccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCC--CcchHHHHHHHHH-HHHhccCcH-HHHH--
Confidence            00001  23788889999998863222111     3567788888753  5789999999999 555443222 2333  


Q ss_pred             CcHHHHHHHhh-cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIE-EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .....++..|+ +++..++..++.+|..++..  . ..+.     ++..|.+.+.+.+...+..++..+..++.
T Consensus       368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~-Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          368 THIETVINALKTERDVSVRQRAVDLLYAMCDR--S-NAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--H-HHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--h-hHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            46788888888 88899999999999999854  2 2232     46677788888888888888887777763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.63  E-value=2.7e-07  Score=79.16  Aligned_cols=174  Identities=16%  Similarity=0.154  Sum_probs=131.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVE---RGIIAPLISMLC-SQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~---~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.+.+.+.+.+|..|..|+..|..+...+.. +..   ..+++.|...+. +.+..++..|+.++..|+..-.   ..+.
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~---~~~~   93 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA---KRFS   93 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG---GGGH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---hhHH
Confidence            4578889999999999999999999876111 111   234666777784 8899999999999999997321   1222


Q ss_pred             --hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           79 --KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        79 --~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                        -...+|.++..+.++.+.++..+..+|..+......      ...++.+...+++           .++.++..++..
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~-----------~~~~vr~~~l~~  156 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSN-----------KNPSVKSETALF  156 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC-----------SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC-----------CChHHHHHHHHH
Confidence              124789999999999999999999999999865432      2367888898988           799999999999


Q ss_pred             HHhhc-CC-CC--ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          157 LHNLS-TC-HQ--LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       157 L~nLs-~~-~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      |..+. .. ++  ....+ . ..++.|+.++.+.  ..+++..|..+++
T Consensus       157 l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~--~~~VR~~A~~~l~  201 (242)
T 2qk2_A          157 IARALTRTQPTALNKKLL-K-LLTTSLVKTLNEP--DPTVRDSSAEALG  201 (242)
T ss_dssp             HHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSS--CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence            99964 33 22  12222 2 5788899999764  5788999988888

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.59  E-value=5.3e-07  Score=94.99  Aligned_cols=272  Identities=12%  Similarity=0.128  Sum_probs=176.3

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS  120 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  120 (339)
                      ++.|+.-+.+.|+++|..|...|.+....+...-..-.....++.|++.|.++++.+|..|+.+|.+++..-.. ..  -
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~--~   84 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ--V   84 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH--H
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH--H
Confidence            55677778889999999999999887653211100011224678899999988999999999999999863322 11  1


Q ss_pred             cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCC-----hHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113          121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQL-----ISPIVSSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~-----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      ...++.|+..+.+           .++.+|..|+.+|..++. ....     ...-.-...+|.|+..+.+. ++...+.
T Consensus        85 ~~i~~~Ll~~l~d-----------~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~  152 (1230)
T 1u6g_C           85 ETIVDTLCTNMLS-----------DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQL  152 (1230)
T ss_dssp             HHHHHHHHHHTTC-----------SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHH
T ss_pred             HHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHH
Confidence            2357778888777           677889999999998865 2221     01112235788888888742 2568889


Q ss_pred             HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC
Q 048113          195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG  274 (339)
Q Consensus       195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~  274 (339)
                      .|+.++.+.+...+..-....  ...++.++..+.++++.++..|+.++..++...+..    + -...++.|++.+.+.
T Consensus       153 ~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~  225 (1230)
T 1u6g_C          153 EALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKN  225 (1230)
T ss_dssp             HHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccC
Confidence            999999943321111111111  235677777788888999999999999998764331    2 234688888877654


Q ss_pred             C-HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113          275 T-WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       275 ~-~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      + +..+..|+.++..+......  .....-...++.++..+.-+.++++..|...+..++..+
T Consensus       226 ~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          226 DSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             CSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             CchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence            3 35667788888877764321  111122455666555554445777888888887776643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.53  E-value=9.3e-07  Score=75.71  Aligned_cols=186  Identities=11%  Similarity=0.170  Sum_probs=135.7

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc-CCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113           42 APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIAS  120 (339)
Q Consensus        42 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  120 (339)
                      +.+.+.+++.+...|..|+..|..+..+.+.....- -...++.|...+. +++..++..|+.++..|+..-...-.-.-
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            347788889999999999999999988533211100 1245777888885 88999999999999999842211111112


Q ss_pred             cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHH
Q 048113          121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALL  200 (339)
Q Consensus       121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L  200 (339)
                      ...++.++..+.+           .+..++..|..+|.++......      ...++.+...+++.  +..++..++..|
T Consensus        97 ~~ilp~ll~~l~d-----------~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~--~~~vr~~~l~~l  157 (242)
T 2qk2_A           97 SACVPSLLEKFKE-----------KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNK--NPSVKSETALFI  157 (242)
T ss_dssp             HHHHHHHHHGGGC-----------CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCC--ChHHHHHHHHHH
Confidence            4478899999988           7899999999999999764321      13567788888764  578999999999


Q ss_pred             HHhhcCC-Hh-hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113          201 ENIVSSS-ED-ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       201 ~n~l~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                      ...+... ++ .-.....  ..++.|+.++.+.++.++..|..++..++..
T Consensus       158 ~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          158 ARALTRTQPTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             HHHHTTCCGGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            9445554 32 1122332  4789999999999999999999999998854

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.52  E-value=5.4e-06  Score=76.64  Aligned_cols=236  Identities=14%  Similarity=0.099  Sum_probs=158.8

Q ss_pred             HHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHhhcCC--hHHHHHhhcC---------------C--ChhHHHHHH
Q 048113           43 PLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIVKSGI--VPVLLEVLQC---------------Q--STTLIELTV  102 (339)
Q Consensus        43 ~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~--i~~Lv~lL~~---------------~--~~~~~~~a~  102 (339)
                      .++..|.. ++.+.+..++++|..|.. .+..|..+.+.++  +|.++.++..               .  ..+++-+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            34555554 245667789999999999 7999999987643  6777654431               1  245678899


Q ss_pred             HHHHHHhcCccchHHHHhcchH--HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCC-CCh----H-HHHhcC
Q 048113          103 AAMLILSSCLENKLEIASSGAI--QRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCH-QLI----S-PIVSSG  174 (339)
Q Consensus       103 ~~L~nLs~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~-~~~----~-~i~~~g  174 (339)
                      .++|-|+..++..+.+.+.+..  +.|+.+++..          ...++..-++.+|.|+.... ...    . .++..+
T Consensus       250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s----------~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~  319 (480)
T 1ho8_A          250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT----------IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN  319 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC----------CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHcc
Confidence            9999999988776767666644  7888888774          67899999999999997643 222    2 233344


Q ss_pred             cHHHHHHHhhc-cccCchHHHHH---------------------HHHHHHhhcCCHhhhH---------HHHh-hCCcHH
Q 048113          175 VTYCLLQLIHS-SEKSSGLTEKA---------------------IALLENIVSSSEDALQ---------EIAA-TCGAIR  222 (339)
Q Consensus       175 ~i~~Lv~ll~~-~~~~~~~~~~a---------------------~~~L~n~l~~~~~~~~---------~i~~-~~g~i~  222 (339)
                      + +++++.|.. ...++++.+.-                     ..+....+...|..+.         ++.+ ....+.
T Consensus       320 ~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk  398 (480)
T 1ho8_A          320 A-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFR  398 (480)
T ss_dssp             H-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHH
T ss_pred             c-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHH
Confidence            4 455555543 33344444321                     1111112233333322         1211 123578


Q ss_pred             HHHHHhhc----------CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          223 ALVETIEE----------GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       223 ~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .|+++|++          .++.+..-||.=+..++...|. +|..+.+.|+=..+++++.+.++.++..|..+++-+-.
T Consensus       399 ~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          399 QLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999974          2466777788888888888765 78888888999999999999999999999999976644

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.51  E-value=1.5e-05  Score=66.35  Aligned_cols=180  Identities=16%  Similarity=0.181  Sum_probs=139.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS   80 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~   80 (339)
                      .|..+|...|+.++..|+.+|.++.+.   .-+...=...++.++.++++.+..+...|+++|..|-.+.|-....+.. 
T Consensus        37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K-  115 (265)
T 3b2a_A           37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK-  115 (265)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence            467788899999999999999999886   2222333668899999999999999999999999999987776666654 


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                       .+.+|..++.++++-++++++..+..+.-....+.      .+..+.+++.+           .+..++..|+++|.++
T Consensus       116 -l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~S-----------kd~~vK~agl~~L~ei  177 (265)
T 3b2a_A          116 -AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVS-----------PDLYTKVAGFCLFLNM  177 (265)
T ss_dssp             -HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTC-----------SSHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhC-----------CChhHHHHHHHHHHHh
Confidence             35778999999999999999999999943333333      67888889966           8999999999999999


Q ss_pred             cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC
Q 048113          161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS  206 (339)
Q Consensus       161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~  206 (339)
                      +...+....+  .+++.-+-.++++.  ++.+++.|+.++.+.++.
T Consensus       178 a~~S~D~~i~--~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          178 LNSSADSGHL--TLILDEIPSLLQND--NEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGGCSSCCCG--GGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTS
T ss_pred             hcccCCHHHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC
Confidence            8743322211  12344566777764  689999999999954443

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.43  E-value=1.8e-05  Score=65.76  Aligned_cols=225  Identities=12%  Similarity=0.059  Sum_probs=158.7

Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-hH
Q 048113           38 RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-KL  116 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~  116 (339)
                      .+.+..|..+|.+.|+.++.+|+.+|..+-+.-+..-....-...++.++.++.++++.+...|+.+|..|..+.+- ..
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45788899999999999999999999999985333333333346889999999999999999999999999865543 33


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                      .+  .-.+..|.+++.+           +++-.+..|+..|..+......+      +++..+..++.+  ++..++..+
T Consensus       112 ~y--~Kl~~aL~dlik~-----------~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S--kd~~vK~ag  170 (265)
T 3b2a_A          112 TF--LKAAKTLVSLLES-----------PDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS--PDLYTKVAG  170 (265)
T ss_dssp             HH--HHHHHHHHHHTTS-----------CCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC--SSHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcC-----------CCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC--CChhHHHHH
Confidence            33  1257788888887           89999999999999993322222      346678888855  367889999


Q ss_pred             HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHH-Hhh-hcC
Q 048113          197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLL-QLS-VDG  274 (339)
Q Consensus       197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~-~ll-~~~  274 (339)
                      +.+|. +++...+... +.  .+.+..+-++|++.++.+++.|+.++..+...+-.+  +.+-+--.+...+ .+. ..+
T Consensus       171 l~~L~-eia~~S~D~~-i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~--~~~~~~~~~~~~v~~l~~~~~  244 (265)
T 3b2a_A          171 FCLFL-NMLNSSADSG-HL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE--NVKIELLKISRIVDGLVYREG  244 (265)
T ss_dssp             HHHHH-HHGGGCSSCC-CG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS--CCHHHHHHHHHHHHHGGGCSS
T ss_pred             HHHHH-HhhcccCCHH-HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH--hHHHHHHHHHHHHHHHHHhcC
Confidence            99999 5554332221 12  246667778899999999999999999998763110  1111111122222 233 567


Q ss_pred             CHHHHHHHHHHHHHH
Q 048113          275 TWRAKNMARDLLLLL  289 (339)
Q Consensus       275 ~~~~~~~A~~~L~~l  289 (339)
                      .|.++.+|-.+...+
T Consensus       245 ~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          245 APIIRLKAKKVSDLI  259 (265)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            888888876655443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.41  E-value=3.8e-08  Score=76.11  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=93.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.|+..|.++++.+|..|++.|..+.         ...++.|+.+|+++++.+|..|+++|.++..           .++
T Consensus        15 ~~l~~~L~~~~~~vR~~A~~~L~~~~---------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a   74 (131)
T 1te4_A           15 VPRGSHMADENKWVRRDVSTALSRMG---------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERA   74 (131)
T ss_dssp             ------CCSSCCCSSSSCCSSTTSCS---------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhC---------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHH
Confidence            45777888889999999988887653         1237999999999999999999999998864           125


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      ++.|+..+.++++.++..|+++|.++.          +..+++.|+.++++           .++.++..|+.+|..+
T Consensus        75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d-----------~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           75 VEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAET-----------GTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTS-----------CCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHhC
Confidence            899999999999999999999998875          23478999999987           7889999999988753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.34  E-value=0.00023  Score=71.42  Aligned_cols=235  Identities=16%  Similarity=0.084  Sum_probs=138.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC--------HHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113           11 NGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQD--------YEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      ++++.++.-|+-+|..+..+++.     .++..|...|.+++        +.++..|+..|+....++.  +.     .+
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~e-----ev  473 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NI-----EV  473 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CH-----HH
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CH-----HH
Confidence            67788899999999888766322     14667777777655        6788888888888765422  11     24


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      ++.|..++.+++...++.|+.+|..+-....+..      +++.|+..+.+.          .+.+++..++..|..+..
T Consensus       474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~----------~~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQET----------QHGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHC----------SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhcc----------CcHHHHHHHHHHHHhhhC
Confidence            5678888887777677777777766543333222      345555544432          455566666666655533


Q ss_pred             -CCCChHHHHh-----------c----------------CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHH
Q 048113          163 -CHQLISPIVS-----------S----------------GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEI  214 (339)
Q Consensus       163 -~~~~~~~i~~-----------~----------------g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i  214 (339)
                       .++....+++           .                .+|+.|++.+.++. ++.++..|+.+|+ .+....      
T Consensus       538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLG-lI~~g~------  609 (963)
T 4ady_A          538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALG-FVLLRD------  609 (963)
T ss_dssp             TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHH-HHTSSS------
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHH-hhccCC------
Confidence             2221111100           0                13455555554432 3456666666666 433221      


Q ss_pred             HhhCCcHHHHHHHh-hcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          215 AATCGAIRALVETI-EEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       215 ~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                         ...++.++++| ++.++.++..++.+|..++...+.   ..     ++..|..+.++.++.++..|+.+|..+-..
T Consensus       610 ---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---~~-----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          610 ---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---QS-----AIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             ---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---HH-----HHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence               23456666644 345677777777777777655432   11     355677777777777777777777776543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.29  E-value=4.8e-06  Score=71.72  Aligned_cols=186  Identities=10%  Similarity=0.111  Sum_probs=132.1

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHH---Hh-cCChHHHHHHh-ccCCHHHHHHHHHHHHHhccCCc-chh
Q 048113            2 EEMLMDNLLNGERETQIQAANELGK-LSRRQKHKL---VE-RGIIAPLISML-CSQDYEAIEAALLSLLSLACGSE-RNK   74 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~-l~~~~~~~i---~~-~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~-~~~   74 (339)
                      .+-+...+.|.+|..|..|+..|.. +..++.+..   .+ ...+..|...+ ++.+..++..|+.++..++.+-. ..-
T Consensus        18 ~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f   97 (249)
T 2qk1_A           18 PKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF   97 (249)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             ChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            3456778899999999999999999 875422211   11 23466777778 67899999999999999997421 111


Q ss_pred             h-HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           75 I-RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        75 ~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      . .. ..-.+|.++..+.+..+.++..+..++..+.. .++....-.=...++.|...+++           .++.++..
T Consensus        98 ~~~y-~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-----------k~~~vk~~  165 (249)
T 2qk1_A           98 SKDY-VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-----------KTPQIRME  165 (249)
T ss_dssp             CHHH-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-----------SSHHHHHH
T ss_pred             cHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-----------CChHHHHH
Confidence            1 11 12368899999988888999999898888875 22211100011368899999988           79999999


Q ss_pred             HHHHHHhhcCCCCC-hHHH---HhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          153 AIATLHNLSTCHQL-ISPI---VSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       153 a~~~L~nLs~~~~~-~~~i---~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ++.+|..+...... -..+   +....+|.|.+++.+.  +..++..|..++.
T Consensus       166 al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~  216 (249)
T 2qk1_A          166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFA  216 (249)
T ss_dssp             HHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence            99999998763322 1222   2246899999999774  5789999998888

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.20  E-value=2.9e-05  Score=71.78  Aligned_cols=232  Identities=14%  Similarity=0.126  Sum_probs=150.2

Q ss_pred             HHHHHcC-CCHHHHHHHHHHHHHHHHH--HHHHHHhcC--ChHHHHHHhcc---------------C--CHHHHHHHHHH
Q 048113            5 LMDNLLN-GERETQIQAANELGKLSRR--QKHKLVERG--IIAPLISMLCS---------------Q--DYEAIEAALLS   62 (339)
Q Consensus         5 Lv~~L~s-~~~~~~~~a~~~L~~l~~~--~~~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~A~~~   62 (339)
                      +...|.+ ++...+--++.+|..+...  +|..|.+.+  .++.++.+++.               +  ..+++.+++.+
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~  251 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL  251 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence            4445544 3455566788888888775  888887643  36666544331               1  35678999999


Q ss_pred             HHHhccCCcchhhHHhhcCCh--HHHHHhhcCCC-hhHHHHHHHHHHHHhcCcc-c-----hHHHHhcchHHHHHHHhcC
Q 048113           63 LLSLACGSERNKIRIVKSGIV--PVLLEVLQCQS-TTLIELTVAAMLILSSCLE-N-----KLEIASSGAIQRLVEILNG  133 (339)
Q Consensus        63 L~~Ls~~~~~~~~~i~~~g~i--~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~-~-----~~~i~~~g~i~~Lv~ll~~  133 (339)
                      ++.|+. +++....+...+..  +.|+.++.... +.+.+.++.++.|+..... .     ++.+...++ +++++.|+.
T Consensus       252 iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          252 IWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999 67777888777754  67777777654 5688889999999987542 1     223333445 456665544


Q ss_pred             -CCCCCCCccCCCCHHHHH---------------------HHHHHHHh-hcCCCC---------ChHHHHhc--CcHHHH
Q 048113          134 -DLADDDNSYGRISVQAKI---------------------DAIATLHN-LSTCHQ---------LISPIVSS--GVTYCL  179 (339)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~---------------------~a~~~L~n-Ls~~~~---------~~~~i~~~--g~i~~L  179 (339)
                       +.         .++++..                     ........ |.=+|.         |...+-+.  ..+..|
T Consensus       330 rk~---------~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L  400 (480)
T 1ho8_A          330 RKY---------SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQL  400 (480)
T ss_dssp             SCC---------SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHH
T ss_pred             CCC---------CcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHH
Confidence             33         2332222                     12222221 111221         22233332  367889


Q ss_pred             HHHhhcc--------ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          180 LQLIHSS--------EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       180 v~ll~~~--------~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      +++|.+.        +.++....-||.=++..+...|++|..+-+ -|+=..+.+++.+++++++.+|+.|+..+..
T Consensus       401 ~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          401 IELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999742        224566666776677566678888877665 8999999999999999999999999877654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.17  E-value=4.9e-05  Score=65.32  Aligned_cols=191  Identities=10%  Similarity=0.116  Sum_probs=131.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHH-hccCCcchhhHHhh-cCChHHHHHhh-cCCChhHHHHHHHHHHHHhcCc---cch-
Q 048113           43 PLISMLCSQDYEAIEAALLSLLS-LACGSERNKIRIVK-SGIVPVLLEVL-QCQSTTLIELTVAAMLILSSCL---ENK-  115 (339)
Q Consensus        43 ~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~---~~~-  115 (339)
                      .+-+.+.+.+...|..|+..|.. +..++++....-.+ ...+..|.+.+ ...+..++..|+.++..++..-   ... 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34567788999999999999999 87643432210111 13477788888 6778899999999999998421   111 


Q ss_pred             HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHH
Q 048113          116 LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       116 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      ..  ....+|.++..+.+           ....++..+..+|..++.. ++....-.=...++.|+..|++.  ...+++
T Consensus       100 ~y--~~~llp~ll~~l~d-----------kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~  164 (249)
T 2qk1_A          100 DY--VSLVFTPLLDRTKE-----------KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRM  164 (249)
T ss_dssp             HH--HHHHHHHHHHGGGC-----------CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHH
T ss_pred             HH--HHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHH
Confidence            21  13368899999988           6888999988888888762 22111100012577888888774  478999


Q ss_pred             HHHHHHHHhhcCCHh---hhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhcc
Q 048113          195 KAIALLENIVSSSED---ALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       195 ~a~~~L~n~l~~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                      .++..|...+...+.   .-...+. ...+|.|.+++.+.++.++..|..++..++..
T Consensus       165 ~al~~l~~~~~~~~~~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          165 ECTQLFNASMKEEKDGYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             HHHHHHHHHHHHCCSCSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999998844433332   1112231 46899999999999999999999999888743

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.17  E-value=3.2e-07  Score=70.83  Aligned_cols=120  Identities=16%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113           37 ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL  116 (339)
Q Consensus        37 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~  116 (339)
                      ....++.++.+|+++++.+|..|+++|..+..  +          .++.|+.+|.++++.++..|+++|.++..      
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            45678889999999999999999888876543  1          26999999999999999999999987652      


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                          ...++.|+..+++           .++.++..|+++|.++..          ..+++.|..++++.  +..++..|
T Consensus        72 ----~~a~~~L~~~L~d-----------~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~--~~~vr~~A  124 (131)
T 1te4_A           72 ----ERAVEPLIKLLED-----------DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG--TGFARKVA  124 (131)
T ss_dssp             ----HHHHHHHHHHHHH-----------CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC--CTHHHHHH
T ss_pred             ----HHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHH
Confidence                3468999999988           799999999999999852          24688999999763  57888888


Q ss_pred             HHHHH
Q 048113          197 IALLE  201 (339)
Q Consensus       197 ~~~L~  201 (339)
                      ..+|.
T Consensus       125 ~~aL~  129 (131)
T 1te4_A          125 VNYLE  129 (131)
T ss_dssp             HHHGG
T ss_pred             HHHHH
Confidence            88776

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.14  E-value=0.00019  Score=71.94  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc-
Q 048113           14 RETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ-   91 (339)
Q Consensus        14 ~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~-   91 (339)
                      +.+|..|+-.|+....+ .     +..++..|..++.+++...++.|+.+|+.+-.+....       .++..|+..+. 
T Consensus       451 ~~ir~gAaLGLGla~~GS~-----~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e  518 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSA-----NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQE  518 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCC-----CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhc
Confidence            45555666666554322 1     1124566777777777666667777777653322211       12344444332 


Q ss_pred             CCChhHHHHHHHHHHHHhcCccc-hHHHH---------------------------hcchHHHHHHHhcCCCCCCCCccC
Q 048113           92 CQSTTLIELTVAAMLILSSCLEN-KLEIA---------------------------SSGAIQRLVEILNGDLADDDNSYG  143 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nLs~~~~~-~~~i~---------------------------~~g~i~~Lv~ll~~~~~~~~~~~~  143 (339)
                      ..+..++..++..|..+....+. .+.+.                           +...|+.|+..+.++         
T Consensus       519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---------  589 (963)
T 4ady_A          519 TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---------  589 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---------
T ss_pred             cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---------
Confidence            33455666666666655432211 11110                           112577777777654         


Q ss_pred             CCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113          144 RISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA  223 (339)
Q Consensus       144 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~  223 (339)
                       .+..++..|+.+|..+...++        ..++.++.+|..+. ++.++..+..+|+ +++....      . ..++..
T Consensus       590 -~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~-d~~VR~gAalALG-li~aGn~------~-~~aid~  651 (963)
T 4ady_A          590 -SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSH-NAHVRCGTAFALG-IACAGKG------L-QSAIDV  651 (963)
T ss_dssp             -SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCS-CHHHHHHHHHHHH-HHTSSSC------C-HHHHHH
T ss_pred             -CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcC-CHHHHHHHHHHHH-HhccCCC------c-HHHHHH
Confidence             577889999999988765432        25777887766543 5788999999999 5554322      1 247888


Q ss_pred             HHHHhhcCChHHHHHHHHHHHHhhccCch
Q 048113          224 LVETIEEGSPQCKEHAVAILLLICKSCRD  252 (339)
Q Consensus       224 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~  252 (339)
                      |..++.+.+..++..|+.+|..+.....+
T Consensus       652 L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          652 LDPLTKDPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence            88888888999999999999998765433

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.13  E-value=2.8e-05  Score=70.02  Aligned_cols=244  Identities=7%  Similarity=-0.018  Sum_probs=148.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113            6 MDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV   85 (339)
Q Consensus         6 v~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~   85 (339)
                      ++++.+.|.+.+.-.--++.+++..... +  -=++..+.+-++++++-+|..|+++|+++...  +--+     ...+.
T Consensus        74 ~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~  143 (355)
T 3tjz_B           74 TKLFQSNDPTLRRMCYLTIKEMSCIAED-V--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERY  143 (355)
T ss_dssp             HGGGGCCCHHHHHHHHHHHHHHTTTSSC-G--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCHHH-H--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHH
Confidence            4566677777777666666665543100 0  12455566777888999999999999999882  2222     24566


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCC
Q 048113           86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQ  165 (339)
Q Consensus        86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~  165 (339)
                      +-+.|.+.++.++..|+.+...|....+  +.+  .++++.+-+++.+           .++-+..+|+.+|..+...+.
T Consensus       144 lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v--~~~~~~l~~ll~d-----------~n~~V~~~Al~lL~ei~~~d~  208 (355)
T 3tjz_B          144 MKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV--KRWVNEAQEAASS-----------DNIMVQYHALGLLYHVRKNDR  208 (355)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH--HTTHHHHHHHTTC-----------SSHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHhcC-----------CCccHHHHHHHHHHHHHhhch
Confidence            7788889999999999999998875443  323  3689999999988           799999999999999976431


Q ss_pred             ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh-HHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHH
Q 048113          166 LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL-QEIAATCGAIRALVETIEEGSPQCKEHAVAILL  244 (339)
Q Consensus       166 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  244 (339)
                        .      .+..|+..+..+.-..+  ..-+..+. .+......- ...  ....++.+...|++.++.+.-.|+.++.
T Consensus       209 --~------a~~kLv~~l~~~~l~~~--~~q~~llr-~l~~~~~~d~~~~--~~~~~~~l~~~L~~~~~aVvyEa~k~I~  275 (355)
T 3tjz_B          209 --L------AVSKMISKFTRHGLKSP--FAYCMMIR-VASRQLEDEDGSR--DSPLFDFIESCLRNKHEMVVYEAASAIV  275 (355)
T ss_dssp             --H------HHHHHHHHHHSSCCSCH--HHHHHHHH-HHTCC-------------------CCCCCSSHHHHHHHHHHHT
T ss_pred             --H------HHHHHHHHHhcCCCcCh--HHHHHHHH-HHHHhccccchhh--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence              1      45556666654211012  12222333 332221111 111  1356677777788889999999999998


Q ss_pred             HhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          245 LICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       245 ~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      .+...+ .   . . -..++..|..++.++++.+|..|+..|..+....
T Consensus       276 ~l~~~~-~---~-~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~  318 (355)
T 3tjz_B          276 NLPGCS-A---K-E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH  318 (355)
T ss_dssp             C-----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred             hccCCC-H---H-H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence            886532 1   1 1 1345777888899999999999999888777644

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.12  E-value=0.00014  Score=64.04  Aligned_cols=182  Identities=12%  Similarity=0.127  Sum_probs=133.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHH-HHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh-
Q 048113            4 MLMDNLLNGERETQIQAANELGK-LSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK-   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~-l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~-   79 (339)
                      .+++.|.+++...+..++..|+. +..+  ....|++.+++..|+......+.+.+..++++|.+|=. ...+...+++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~  200 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence            46778888999999999999999 5554  88889999999999999999999999999999999998 5777766664 


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhc--------c--hHHHHHHHhcCCCCCCCCccCCCCHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASS--------G--AIQRLVEILNGDLADDDNSYGRISVQ  148 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~--------g--~i~~Lv~ll~~~~~~~~~~~~~~~~~  148 (339)
                      ...|..+..++.+.+..+...|+.+|..+.... .+...+.+.        |  -.+.|+.+|+..+        +.+.+
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~--------~~D~e  272 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKN--------GADPE  272 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT--------SCCHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccC--------CCCHH
Confidence            467899999999888889999999999998644 344433321        1  2779999998321        17899


Q ss_pred             HHHHHHHHHHhhcC-CC--CChHHHH----hcCcHHHHHHHhhccccCchHHH
Q 048113          149 AKIDAIATLHNLST-CH--QLISPIV----SSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       149 ~~~~a~~~L~nLs~-~~--~~~~~i~----~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      ++.+|+..+-.+-. .+  +.+..+.    +.|.-..+.+.|.+...+.++++
T Consensus       273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            99999888776633 23  2233333    23544455555655322334443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.10  E-value=0.0002  Score=72.52  Aligned_cols=296  Identities=11%  Similarity=0.090  Sum_probs=187.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc--hhhHHhhcC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSER--NKIRIVKSG   81 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~~~i~~~g   81 (339)
                      ++..+..++...+..|+..+..+..+ ........+.+..|.+.+.+....  +.|+.++..++...+.  .-+.+ -.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~   95 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQ   95 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHT
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHH
Confidence            44555554556667777777776653 111112236677777777665333  8999999999964322  11221 125


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      .+|.++....+....++..|..++..+.. .++...    ...+|.|+..+++.          .....+..|+.++..|
T Consensus        96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~----------~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVET----------NKWQEKIAILAAFSAM  161 (986)
T ss_dssp             THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccc----------cchHHHHHHHHHHHHH
Confidence            78888888888888899888877777663 333222    34799999999773          5799999999999999


Q ss_pred             cCCCCChHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113          161 STCHQLISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH  238 (339)
Q Consensus       161 s~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  238 (339)
                      +...  ...+...  ..||.+...+-+.  ..++...|..++. .+|..-.|+.    -..++|.|++-+.+++.  ...
T Consensus       162 ~~~~--~~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~-~~~~~~~n~d----~~~~~~~~~~~~~~p~~--~~~  230 (986)
T 2iw3_A          162 VDAA--KDQVALRMPELIPVLSETMWDT--KKEVKAAATAAMT-KATETVDNKD----IERFIPSLIQCIADPTE--VPE  230 (986)
T ss_dssp             HHHS--HHHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHH-HHGGGCCCTT----TGGGHHHHHHHHHCTTH--HHH
T ss_pred             HHHh--HHHHHHhccchhcchHhhcccC--cHHHHHHHHHHHH-HHHhcCCCcc----hhhhHHHHHHHhcChhh--hHH
Confidence            8643  3444333  6788888888775  4788888888888 5554444432    14689999999988743  233


Q ss_pred             HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH--h
Q 048113          239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID--A  316 (339)
Q Consensus       239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~  316 (339)
                      ++..|..-++-..-+. ..+  +=.+|.|.+=+...+...+++++.+..|+++.-+.    ......-++.++..+.  .
T Consensus       231 ~~~~l~~~tfv~~v~~-~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~----~~~~~~f~~~l~p~~~~~~  303 (986)
T 2iw3_A          231 TVHLLGATTFVAEVTP-ATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED----PQVIAPFLGKLLPGLKSNF  303 (986)
T ss_dssp             HHHHHTTCCCCSCCCH-HHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC----HHHHHHHHTTTHHHHHHHT
T ss_pred             HHHHhhcCeeEeeecc-hhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC----HHHHhhhhhhhhhHHHHHh
Confidence            4444433332211100 111  01356666667778999999999999999997642    1223334444444443  2


Q ss_pred             c---CcccchHHHHHHHHHHHH
Q 048113          317 E---GDTVAGTTLRLVEEMIAK  335 (339)
Q Consensus       317 ~---~~~~~~~a~~~l~~~v~~  335 (339)
                      +   ..++|+.|.+.+..+...
T Consensus       304 ~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          304 ATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHHh
Confidence            3   366677777777776554

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.08  E-value=0.0002  Score=63.07  Aligned_cols=184  Identities=13%  Similarity=0.139  Sum_probs=132.9

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHH-hccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-
Q 048113           42 APLISMLCSQDYEAIEAALLSLLS-LACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-  119 (339)
Q Consensus        42 ~~Lv~lL~~~~~~~~~~A~~~L~~-Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-  119 (339)
                      ..+++-|.+++...+..++..|.. ++. +.+.-..|+..||+..|+++....+...+.+++.++.+|..+...-.-|+ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~-D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQE-DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHT-CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhc-chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            445666777788889999999998 776 78999999999999999999999999999999999999998777654444 


Q ss_pred             hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhc-C---------cHHHHHHHhhcc-c
Q 048113          120 SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSS-G---------VTYCLLQLIHSS-E  187 (339)
Q Consensus       120 ~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~-g---------~i~~Lv~ll~~~-~  187 (339)
                      ...+|..+..++.+           ....+...|+..|..++.. +.+...+.++ .         -++.|+.+|++. .
T Consensus       200 ~~~fI~~lyslv~s-----------~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~  268 (339)
T 3dad_A          200 HSDTIQWLYTLCAS-----------LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG  268 (339)
T ss_dssp             CHHHHHHHHHGGGC-----------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS
T ss_pred             CHHHHHHHHHHHcC-----------ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC
Confidence            66799999999987           7899999999999999874 4454433332 1         377999999731 1


Q ss_pred             cCchHHHHHHHHHHHhhcCCH--hhhHHHH---hhCCcHHHHHHHhhcC--ChHHHH
Q 048113          188 KSSGLTEKAIALLENIVSSSE--DALQEIA---ATCGAIRALVETIEEG--SPQCKE  237 (339)
Q Consensus       188 ~~~~~~~~a~~~L~n~l~~~~--~~~~~i~---~~~g~i~~Lv~lL~~~--~~~~~~  237 (339)
                      .+.+++.+|+..+-..+...+  +.+..+.   +..|.=..+.++++..  ++..++
T Consensus       269 ~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          269 ADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            357888887765543333322  3233333   2234444555566653  344443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.03  E-value=0.001  Score=53.22  Aligned_cols=215  Identities=13%  Similarity=0.155  Sum_probs=150.2

Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccc
Q 048113           36 VERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLEN  114 (339)
Q Consensus        36 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~  114 (339)
                      .+...+..++.+|+++-..+|.+|+..+..++...++-.+.+.     ..|+-++.. ....+....+.+++.++...+.
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            4566788899999999999999999999999997666555543     446666554 4555555566888888753321


Q ss_pred             hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113          115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLT  193 (339)
Q Consensus       115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  193 (339)
                        .|  .+.+|.+..=.+-           ++++.+.+...+|..+.. +|+...     +++.-+..++.++  +..-+
T Consensus       104 --~v--~~vVp~lfanyri-----------gd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk--d~~Dk  161 (253)
T 2db0_A          104 --LV--KSMIPVLFANYRI-----------GDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK--NREDK  161 (253)
T ss_dssp             --HH--HHHHHHHHHHSCC-----------CSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS--SHHHH
T ss_pred             --HH--HhhHHHHHHHHhc-----------CCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC--ChHHH
Confidence              11  2245655555555           799999999999999877 555333     3456678888864  33323


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc
Q 048113          194 EKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD  273 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~  273 (339)
                      ..|+.    .+..-.+|..+.+.  -++|.|..+|.+++.-++..|+.+|.+++..++ +.|+.+.      .-++-+.+
T Consensus       162 l~aLn----Fi~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-klRkii~------~kl~e~~D  228 (253)
T 2db0_A          162 LTALN----FIEAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLND-KLRKVVI------KRLEELND  228 (253)
T ss_dssp             HHHHH----HHHTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-HHHHHHH------HHHHHCCC
T ss_pred             HHHHH----HHHHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-HHHHHHH------HHHHHhcC
Confidence            34444    44455566666663  689999999999999999999999999998864 4777543      34445667


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 048113          274 GTWRAKNMARDLLLLLR  290 (339)
Q Consensus       274 ~~~~~~~~A~~~L~~l~  290 (339)
                      .+..++......|..+.
T Consensus       229 ~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          229 TSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            77777777666665554

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.93  E-value=9.5e-05  Score=66.57  Aligned_cols=236  Identities=13%  Similarity=0.014  Sum_probs=129.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIV   83 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i   83 (339)
                      |..=+.++++-+|-.|+++|+++... .-     ..+.+.+.+.+.+.++.++..|+-+..+|...+|+.-    + +.+
T Consensus       109 l~kDl~~~N~~iR~lALRtL~~I~~~~m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~  178 (355)
T 3tjz_B          109 LTKDMTGKEDSYRGPAVRALCQITDSTML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWV  178 (355)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTH
T ss_pred             HHhhcCCCcHhHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHH
Confidence            34556789999999999999998743 11     1234445667788999999999999999988655432    2 578


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113           84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC  163 (339)
Q Consensus        84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~  163 (339)
                      +.+-.++.+.++.++.+|+.+|+.+...+.  .      .+.+|+..+....        -.++-.+..-++.+..++..
T Consensus       179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~--------l~~~~~q~~llr~l~~~~~~  242 (355)
T 3tjz_B          179 NEAQEAASSDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHG--------LKSPFAYCMMIRVASRQLED  242 (355)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSC--------CSCHHHHHHHHHHHTCC---
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCC--------CcChHHHHHHHHHHHHhccc
Confidence            889999999999999999999999986541  1      5666676665510        02565666666666665553


Q ss_pred             C--CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          164 H--QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       164 ~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                      +  +..     ...++.+...|++.  ++.+.-.|+.++. .+...+.   ...  ..++..|..++.++++.++..|+.
T Consensus       243 d~~~~~-----~~~~~~l~~~L~~~--~~aVvyEa~k~I~-~l~~~~~---~~~--~~a~~~L~~fLss~d~niryvaLr  309 (355)
T 3tjz_B          243 EDGSRD-----SPLFDFIESCLRNK--HEMVVYEAASAIV-NLPGCSA---KEL--APAVSVLQLFCSSPKAALRYAAVR  309 (355)
T ss_dssp             -------------------CCCCCS--SHHHHHHHHHHHT-C----------------CCCTHHHHHHSSSSSSHHHHHH
T ss_pred             cchhhH-----HHHHHHHHHHHcCC--ChHHHHHHHHHHH-hccCCCH---HHH--HHHHHHHHHHHcCCCchHHHHHHH
Confidence            2  212     23455666667653  5678888888888 5544221   222  345677888888888999999999


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHH
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDL  285 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~  285 (339)
                      .|..+....|..    +.  ..-..+.+++.+++..+...|...
T Consensus       310 ~L~~l~~~~P~~----v~--~~n~~ie~li~d~n~sI~t~Aitt  347 (355)
T 3tjz_B          310 TLNKVAMKHPSA----VT--ACNLDLENLVTDANRSIATLAITT  347 (355)
T ss_dssp             CC------------------------------------------
T ss_pred             HHHHHHHHCcHH----HH--HHHHHHHHHccCCcHhHHHHHHHH
Confidence            998888765432    11  134556677788777776665543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.76  E-value=0.0045  Score=49.61  Aligned_cols=181  Identities=12%  Similarity=0.202  Sum_probs=132.0

Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           81 GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        81 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      ..+..++.+|+.+--.++.+|+..+.+++...+.-.    ...+.+|+-+++.+          +..+......+++..+
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ks----------EaIpltqeIa~a~G~l   97 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKS----------EAIPLTQEIAKAFGQM   97 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHC----------CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhc----------ccCchHHHHHHHHhHH
Confidence            467888999988888899999999999997544311    22577788887663          7888888888888888


Q ss_pred             cC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHH
Q 048113          161 ST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHA  239 (339)
Q Consensus       161 s~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a  239 (339)
                      +. .|+...     +.+|.+..-..-+  +++++.+-..+|......+|+.-      .+++..+..++.+++..-+..|
T Consensus        98 a~i~Pe~v~-----~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~------~~v~rdi~smltskd~~Dkl~a  164 (253)
T 2db0_A           98 AKEKPELVK-----SMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM------ASIVRDFMSMLSSKNREDKLTA  164 (253)
T ss_dssp             HHHCHHHHH-----HHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH------HHHHHHHHHHTSCSSHHHHHHH
T ss_pred             HHhCHHHHH-----hhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH------HHHHHHHHHHhcCCChHHHHHH
Confidence            76 555222     2344444444443  57888888888885555555433      3566778889998887778878


Q ss_pred             HHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          240 VAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       240 ~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      +..+..+..+..   +.   -.-.+|.|..++.+.+.-++..|+..|-+++..++
T Consensus       165 LnFi~alGen~~---~y---v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np  213 (253)
T 2db0_A          165 LNFIEAMGENSF---KY---VNPFLPRIINLLHDGDEIVRASAVEALVHLATLND  213 (253)
T ss_dssp             HHHHHTCCTTTH---HH---HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHhccCc---cc---cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence            777777765532   21   23479999999999999999999999999998654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.72  E-value=0.0027  Score=64.42  Aligned_cols=245  Identities=14%  Similarity=0.138  Sum_probs=164.8

Q ss_pred             HHHHHHHHHHHHH------HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhc
Q 048113           18 IQAANELGKLSRR------QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQ   91 (339)
Q Consensus        18 ~~a~~~L~~l~~~------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~   91 (339)
                      +.|+..+..++..      .--.+  .+.++.++..+.+....++..|-.++..+...-+.+  .+  ..++|.|+..|.
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~  143 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIV  143 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhc
Confidence            7777777777743      11111  257888888888888899998888877777632222  22  456899999887


Q ss_pred             CCC-hhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113           92 CQS-TTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPI  170 (339)
Q Consensus        92 ~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i  170 (339)
                      +.. -..+..|+.++..|+...+......=...||.+...+..           ..+++...|..++..+|..-.|++.-
T Consensus       144 ~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d-----------~k~~v~~~~~~~~~~~~~~~~n~d~~  212 (986)
T 2iw3_A          144 ETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-----------TKKEVKAAATAAMTKATETVDNKDIE  212 (986)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC-----------SSHHHHHHHHHHHHHHGGGCCCTTTG
T ss_pred             cccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc-----------CcHHHHHHHHHHHHHHHhcCCCcchh
Confidence            663 678899999999998644322222235678888888877           68999999999999988755554332


Q ss_pred             HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113          171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       171 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  250 (339)
                         ..+|.|++.+.+++   + ...|+..|+ ..+--.+.-.....  =.+|-|.+-|...+..++..++.++-|+|.--
T Consensus       213 ---~~~~~~~~~~~~p~---~-~~~~~~~l~-~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          213 ---RFIPSLIQCIADPT---E-VPETVHLLG-ATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             ---GGHHHHHHHHHCTT---H-HHHHHHHHT-TCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred             ---hhHHHHHHHhcChh---h-hHHHHHHhh-cCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence               46899999998742   2 555666666 33322222222221  24677778888888889999999999999732


Q ss_pred             --chhHHHHHHhcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhc
Q 048113          251 --RDKYRSSILKEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       251 --~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~  291 (339)
                        +...+. + --..+|.|.+... -.+|++|+.|..++..|.+
T Consensus       283 ~~~~~~~~-f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          283 EDPQVIAP-F-LGKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             CCHHHHHH-H-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhh-h-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence              222111 1 1346666666544 3689999888888877744

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.43  E-value=0.0026  Score=65.18  Aligned_cols=254  Identities=13%  Similarity=0.114  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhc------cCCHHHHHHHHHHHHHhccCCcchhhHHhhc-----CCh
Q 048113           15 ETQIQAANELGKLSRRQKHKLVERGIIAPLISMLC------SQDYEAIEAALLSLLSLACGSERNKIRIVKS-----GIV   83 (339)
Q Consensus        15 ~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~------~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~-----g~i   83 (339)
                      ..|..|...|..++......+.. -+++.+-..+.      +.+...++.|+.+++.++.+ ...+..-...     ...
T Consensus       376 s~R~aa~~~L~~l~~~~~~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~-~~~~~~~~~~~~~~~~l~  453 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEVLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN-GNITNAGVSSTNNLLNVV  453 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBS-SCCBTTBCCCBCTTCCHH
T ss_pred             CcHHHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH-hccccCCcccccccccHH
Confidence            46777888888888762232211 12233333444      45667899999999999863 1111100000     222


Q ss_pred             HH----HHHhhcCC---ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHH
Q 048113           84 PV----LLEVLQCQ---STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIAT  156 (339)
Q Consensus        84 ~~----Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~  156 (339)
                      +.    ++..|.++   .+-+|..|++++..++..-. +.  .-...++.+++.+.+           .+..++..|+.+
T Consensus       454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~--~l~~~l~~l~~~L~d-----------~~~~V~~~A~~A  519 (960)
T 1wa5_C          454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KA--QLIELMPILATFLQT-----------DEYVVYTYAAIT  519 (960)
T ss_dssp             HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HH--HHHHHHHHHHHHTTC-----------SCHHHHHHHHHH
T ss_pred             HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HH--HHHHHHHHHHHHhCC-----------CChhHHHHHHHH
Confidence            32    33445555   78899999999999986421 22  123467788888877           789999999999


Q ss_pred             HHhhcCCC--------C-ChHHHHhc--CcHHHHHHHhhccc------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCC
Q 048113          157 LHNLSTCH--------Q-LISPIVSS--GVTYCLLQLIHSSE------KSSGLTEKAIALLENIVSSSEDALQEIAATCG  219 (339)
Q Consensus       157 L~nLs~~~--------~-~~~~i~~~--g~i~~Lv~ll~~~~------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g  219 (339)
                      |.+++...        + .+..+...  ..++.|+.++....      ...+....|+..+...+.   +.......  .
T Consensus       520 l~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~---~~~~p~~~--~  594 (960)
T 1wa5_C          520 IEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE---DSIQPLFP--Q  594 (960)
T ss_dssp             HHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT---TTTGGGHH--H
T ss_pred             HHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH---HhhhhHHH--H
Confidence            99998632        1 23333221  45666677776530      012223333333331221   11111121  2


Q ss_pred             cHHHHHHHhhc-----CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113          220 AIRALVETIEE-----GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       220 ~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      .++.|+..+..     .++.....+..++..++....++... -.....+|.+..++..........+..++..+.
T Consensus       595 l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          595 LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            34455554432     24556666778887777653222222 233457788888887765555566666665554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.42  E-value=0.00085  Score=62.90  Aligned_cols=239  Identities=15%  Similarity=0.112  Sum_probs=153.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-H----HHHHHhcCChHHHHHHhc--c------C--CHHHHHHHHHHHHHhc
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR-Q----KHKLVERGIIAPLISMLC--S------Q--DYEAIEAALLSLLSLA   67 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~-~----~~~i~~~g~i~~Lv~lL~--~------~--~~~~~~~A~~~L~~Ls   67 (339)
                      |.|+.-|-+..|++|.-|+-+|+.+.+. .    |..-...+..-+|+-.+.  .      +  -..+|+.++++|+.+ 
T Consensus       177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-  255 (800)
T 3oc3_A          177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-  255 (800)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence            5577777899999999999999999876 1    110011233444433322  1      1  237999999999999 


Q ss_pred             cCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH-hcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113           68 CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA-SSGAIQRLVEILNGDLADDDNSYGRIS  146 (339)
Q Consensus        68 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~  146 (339)
                      .+-+..      ..++..|+..+..+.-+++..++-.|..+      +..+. =.+.++.++.-|++           .+
T Consensus       256 ~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D-----------~D  312 (800)
T 3oc3_A          256 YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSS-----------PD  312 (800)
T ss_dssp             TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTC-----------SS
T ss_pred             HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCC-----------cc
Confidence            754432      34555555555777889999999999888      11111 24567788888888           79


Q ss_pred             HHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHH
Q 048113          147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVE  226 (339)
Q Consensus       147 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~  226 (339)
                      .+++..|+.+|.-++ .++....     ++..+-+.|.+-++-..-....+..|+ .++..+..  . ......+|.|.-
T Consensus       313 DDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLA-kL~s~p~~--a-~~dp~LVPRL~P  382 (800)
T 3oc3_A          313 EDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLT-KIYRENPE--L-SIPPERLKDIFP  382 (800)
T ss_dssp             HHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHH-HHHHHCTT--C-CCCSGGGGGTGG
T ss_pred             cHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHH-HHHcCCcc--c-ccChHHHHHHHh
Confidence            999999999999998 3322222     233344444443222233444455555 33333321  1 112467899999


Q ss_pred             HhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH-HHhhhcCCHHHHHHHHHHHH
Q 048113          227 TIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL-LQLSVDGTWRAKNMARDLLL  287 (339)
Q Consensus       227 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~A~~~L~  287 (339)
                      ++.+.-+.++..++.+|..+.  ...          ++..+ ..++-..+++++..+..+-.
T Consensus       383 FLRHtITSVR~AVL~TL~tfL--~~~----------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          383 CFTSPVPEVRTSILNMVKNLS--EES----------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGTCSSHHHHHHHHHHTTTCC--CHH----------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhcCCcHHHHHHHHHHHHHHH--hhh----------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999999999987776  111          23333 34577788888877777664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.011  Score=51.29  Aligned_cols=178  Identities=15%  Similarity=0.120  Sum_probs=118.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HH----HHHH-hc-CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcc--h-h
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QK----HKLV-ER-GIIAPLISMLCSQDYEAIEAALLSLLSLACGSER--N-K   74 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~----~~i~-~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~-~   74 (339)
                      |-+.|.|.+|..|..|+..|..+... .+    .... .. ...+.+-..+.+.+..++..|+.++..++.....  . +
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            56789999999999999999887765 11    1111 12 3445566788888999999999999988763211  1 1


Q ss_pred             --hHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113           75 --IRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI  151 (339)
Q Consensus        75 --~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~  151 (339)
                        ....-...+|.|+. .+.++.+.++..+..++..+.........     .++.+...+.+           .++.++.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~-----------Knpkv~~  157 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK-----------KLPKLIA  157 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC-----------SCHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc-----------cCHHHHH
Confidence              11222346777775 47777888999998888877643332222     35667777777           7999999


Q ss_pred             HHHHHHHhhcCC--CCCh--HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          152 DAIATLHNLSTC--HQLI--SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       152 ~a~~~L~nLs~~--~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      .++..|..+...  ....  ...+. .+++.+..++.+.  +..++..|..++.
T Consensus       158 ~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~--~~~VR~aA~~l~~  208 (278)
T 4ffb_C          158 AAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG--DRNVRSQTMNLIV  208 (278)
T ss_dssp             HHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS--SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC--cHHHHHHHHHHHH
Confidence            999999887431  2211  11111 2445566777764  5899999998888

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.86  E-value=0.018  Score=50.55  Aligned_cols=178  Identities=12%  Similarity=0.102  Sum_probs=106.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHH----HHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR--QKHKLVERGIIAPLI----SMLCS-QDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv----~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      +.+++ +...+.+.-++..+|-+..+  ....+.+.+.-..++    ..+.+ ..+..+..++++++|+.. ++..+..+
T Consensus       108 l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l  185 (304)
T 3ebb_A          108 LWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLM  185 (304)
T ss_dssp             HHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHH
T ss_pred             HHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHH
Confidence            33343 44556667777777766554  333443332223333    33332 356779999999999999 68888877


Q ss_pred             hhc--CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           78 VKS--GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        78 ~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                      ...  .+++.+...+.+++..++..++..++|++.... .+..=.....+..+..++...          .+.+....++
T Consensus       186 ~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~----------~d~EalyR~L  255 (304)
T 3ebb_A          186 MSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV----------QDLEATFRLL  255 (304)
T ss_dssp             HHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC----------CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc----------CCHHHHHHHH
Confidence            653  345555555566688899999999999985211 010000112445555666553          6889999999


Q ss_pred             HHHHhhcCCCCChHHHHhc-CcHHHHHHHhhccccCchHHHH
Q 048113          155 ATLHNLSTCHQLISPIVSS-GVTYCLLQLIHSSEKSSGLTEK  195 (339)
Q Consensus       155 ~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~  195 (339)
                      -+|.+|...+.....+.+. |+-..+-+.... ....++.+.
T Consensus       256 vALGtL~~~~~~~~~lak~l~~~~~v~~~~~~-~~~~kv~~~  296 (304)
T 3ebb_A          256 VALGTLISDDSNAVQLAKSLGVDSQIKKYSSV-SEPAKVSEC  296 (304)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC-CSSHHHHHH
T ss_pred             HHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC-CCchhHHHH
Confidence            9999998765555555555 444333333333 233444433

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.77  E-value=0.21  Score=50.86  Aligned_cols=219  Identities=10%  Similarity=0.122  Sum_probs=127.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHh---ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113           10 LNGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISML---CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV   85 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~   85 (339)
                      .+.+|..+..++.+++.++.. ..   .....++.++..+   .++++.++..++++++.++..-..+.. . -..+++.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~---~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~~  533 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV---NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLPL  533 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS---SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc---hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHHH
Confidence            567899999999999998865 11   0123344444433   335788999999999999873222222 2 2368889


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC
Q 048113           86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC  163 (339)
Q Consensus        86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~  163 (339)
                      ++..|.+  +.++..|+.++.+++..  ++..+.  -...++.|..++.+..         -+...+..+..++..++..
T Consensus       534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~---------~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQI---------HKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTC---------SCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCC---------CChHHHHHHHHHHHHHHhc
Confidence            9988855  78999999999999852  223222  1345666667776521         3577888888888888653


Q ss_pred             C--CChHHHHhcCcHHHHHHHhhc---cccCchHHH---HHHHHHH---HhhcCC-H------------------hhhHH
Q 048113          164 H--QLISPIVSSGVTYCLLQLIHS---SEKSSGLTE---KAIALLE---NIVSSS-E------------------DALQE  213 (339)
Q Consensus       164 ~--~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~---~a~~~L~---n~l~~~-~------------------~~~~~  213 (339)
                      .  +......+ ..++++...+..   ...+++...   ..+.+|+   ..+... +                  .....
T Consensus       601 ~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (963)
T 2x19_B          601 LQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV  679 (963)
T ss_dssp             SCHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH
Confidence            2  22222221 344455544432   111222222   3333333   122211 0                  01111


Q ss_pred             HHhhCCcHHHHHHHhhc--CChHHHHHHHHHHHHhhcc
Q 048113          214 IAATCGAIRALVETIEE--GSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       214 i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~  249 (339)
                      +.  ....+.+..++..  .++.+.+.++.++..+...
T Consensus       680 ~~--~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~  715 (963)
T 2x19_B          680 VL--QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKT  715 (963)
T ss_dssp             HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHh
Confidence            22  2355666666653  4578888888888887643

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.62  E-value=0.076  Score=44.81  Aligned_cols=190  Identities=17%  Similarity=0.102  Sum_probs=133.1

Q ss_pred             CHHHHHHHHHHHHHHHHH--HHHHH--HhcCChHHHHH-Hhcc------C-----CHHHHHHHHHHHHHhccCCcchhhH
Q 048113           13 ERETQIQAANELGKLSRR--QKHKL--VERGIIAPLIS-MLCS------Q-----DYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus        13 ~~~~~~~a~~~L~~l~~~--~~~~i--~~~g~i~~Lv~-lL~~------~-----~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      +++.|..|+..|+.--..  .-..+  ..-|.+..|++ ..+-      +     ...-..+|+..|..++. +|+.|..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            555677776665442221  22222  24666666643 2221      1     12334567777888888 6999999


Q ss_pred             HhhcCChHHHHHhhcCCC-----hhHHHHHHHHHHHHhcCcc--chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHH
Q 048113           77 IVKSGIVPVLLEVLQCQS-----TTLIELTVAAMLILSSCLE--NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQA  149 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~  149 (339)
                      +.++...-.|-++|+..+     +-+|..+++.++.|...++  .-..+.+.+.+|..++.+..           ++.-.
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~-----------GselS  161 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES-----------GSELS  161 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-----------SCHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh-----------ccHHH
Confidence            999999888888887654     4588899999999986443  23344478899999999999           89999


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHhc-C-------cHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          150 KIDAIATLHNLSTCHQLISPIVSS-G-------VTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       150 ~~~a~~~L~nLs~~~~~~~~i~~~-g-------~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                      +..|.-.+..+-.++.+...++.. .       ++..+|.-+... ++..+..+.+++.- -++.++..|..+.+
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYl-RLsdn~rar~aL~~  234 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYL-RLSDNPRAREALRQ  234 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHH-HHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            999999999988787777666653 2       333344444333 46788999999988 79999999988864

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.60  E-value=0.018  Score=54.26  Aligned_cols=241  Identities=13%  Similarity=0.145  Sum_probs=148.6

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhc--CChHHHHHhh--cC-----C---ChhHHHHHHHHHHHH
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKS--GIVPVLLEVL--QC-----Q---STTLIELTVAAMLIL  108 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~--g~i~~Lv~lL--~~-----~---~~~~~~~a~~~L~nL  108 (339)
                      ...|+.-|-++..++|.-|+.+|+.+-+............  +..-.|+-++  +.     +   -..+|+.|+.+|..+
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL  255 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI  255 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence            3456666667899999999999998877432111111111  2233333322  21     1   145899999999888


Q ss_pred             hcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHH-hcCcHHHHHHHhhccc
Q 048113          109 SSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIV-SSGVTYCLLQLIHSSE  187 (339)
Q Consensus       109 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~  187 (339)
                       ..-+..     ..++..|+..+..           ...+++..++-.|..+      .+.+. =.++++.++.-|.+. 
T Consensus       256 -~hLp~e-----~~IL~qLV~~l~~-----------~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-  311 (800)
T 3oc3_A          256 -YPLIGP-----NDIIEQLVGFLDS-----------GDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-  311 (800)
T ss_dssp             -TTTSCS-----CCHHHHHTTGGGC-----------SCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-
T ss_pred             -HhCChh-----HHHHHHHHhhcCC-----------CCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-
Confidence             422222     4556666666666           7899999999999998      11111 135677777777774 


Q ss_pred             cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC-C-hHHHHHHHHHHHHhhccCchhHHHHHHhcCChH
Q 048113          188 KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG-S-PQCKEHAVAILLLICKSCRDKYRSSILKEGVMP  265 (339)
Q Consensus       188 ~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~  265 (339)
                       +++++..|+.+|. -++ .++..      ...+..+.+.|.+- + ..........|..|+..+..    .......+|
T Consensus       312 -DDDVRAVAAetLi-PIA-~p~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a~~dp~LVP  378 (800)
T 3oc3_A          312 -DEDIKLLSAELLC-HFP-ITDSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----LSIPPERLK  378 (800)
T ss_dssp             -SHHHHHHHHHHHT-TSC-CSSTH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----CCCCSGGGG
T ss_pred             -ccHHHHHHHHHhh-hhc-chhhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----cccChHHHH
Confidence             5789999999888 555 22111      12344555555432 1 11223344555666655321    111236899


Q ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-cccchHHHHHHH
Q 048113          266 GLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-DTVAGTTLRLVE  330 (339)
Q Consensus       266 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~l~  330 (339)
                      .|...+++.-+.+|..++.+|..+.            ....+.-+.+.+.+|. +++...+.++|.
T Consensus       379 RL~PFLRHtITSVR~AVL~TL~tfL------------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          379 DIFPCFTSPVPEVRTSILNMVKNLS------------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GTGGGGTCSSHHHHHHHHHHTTTCC------------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999999999886665            2345556666666654 677777777774

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.48  E-value=0.067  Score=54.75  Aligned_cols=220  Identities=10%  Similarity=0.109  Sum_probs=125.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHH--HHHHHHhc-----CChHH----HHHHhccC---CHHHHHHHHHHHHHhccCCcchhhH
Q 048113           11 NGERETQIQAANELGKLSRR--QKHKLVER-----GIIAP----LISMLCSQ---DYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~-----g~i~~----Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      +.+|..+..|+.+++.++.+  ........     ...+.    ++..+.++   ++.+|..|+++++.++..-+  ...
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH
Confidence            67888899999999888743  11100000     22222    23334566   89999999999999998421  221


Q ss_pred             HhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc---------chHHHH--hcchHHHHHHHhcCCCCCCCCccCCC
Q 048113           77 IVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE---------NKLEIA--SSGAIQRLVEILNGDLADDDNSYGRI  145 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~---------~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~  145 (339)
                        -..+++.++..|.++++.++..|+.+|.+++....         .+..+.  -...++.|+.+++..+         +
T Consensus       494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~---------~  562 (960)
T 1wa5_C          494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG---------S  562 (960)
T ss_dssp             --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTC---------C
T ss_pred             --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhcc---------C
Confidence              23467888888888889999999999999986321         233332  2346777778877620         0


Q ss_pred             C-HH--HHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhcc---ccCchHHHHHHHHHHHhhcC--CHhhhHHHHh
Q 048113          146 S-VQ--AKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSS---EKSSGLTEKAIALLENIVSS--SEDALQEIAA  216 (339)
Q Consensus       146 ~-~~--~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~n~l~~--~~~~~~~i~~  216 (339)
                      . .+  ....++.+|..++. ..+....... ..++.|+..+...   +.+......++.+++ .+..  .++....+.+
T Consensus       563 ~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~-~l~~~~~~~~~~~~~~  640 (960)
T 1wa5_C          563 SPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIG-AILNYTQRQNLPLLVD  640 (960)
T ss_dssp             CHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HHHHTSCGGGHHHHHH
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-HHHhcCCcchHHHHHH
Confidence            1 11  22345555555433 2222222211 2455666655431   223445555666666 3332  3444444443


Q ss_pred             hCCcHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 048113          217 TCGAIRALVETIEEGSPQCKEHAVAILLLIC  247 (339)
Q Consensus       217 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  247 (339)
                        ..+|.+...|+.......+.+..++..+.
T Consensus       641 --~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          641 --SMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             --HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence              46788888887765556666666555544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.32  E-value=0.15  Score=43.10  Aligned_cols=195  Identities=16%  Similarity=0.135  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHHHHHhccCCcchhh-HHhhcCChHHHHHhhcC-------CC--hh---HHHHHHHHHHHHhcCccchHHH
Q 048113           52 DYEAIEAALLSLLSLACGSERNKI-RIVKSGIVPVLLEVLQC-------QS--TT---LIELTVAAMLILSSCLENKLEI  118 (339)
Q Consensus        52 ~~~~~~~A~~~L~~Ls~~~~~~~~-~i~~~g~i~~Lv~lL~~-------~~--~~---~~~~a~~~L~nLs~~~~~~~~i  118 (339)
                      +++.|+.|+..|..=-...++-.. ....-|.+..|++=+-+       ++  ..   -..+|+..|-.++++++.|..+
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            455688775554432221222222 23345778777653321       11  11   2356666667778888889989


Q ss_pred             HhcchHHHHHHHhcCCCCCCCCccCCCC---HHHHHHHHHHHHhhcCC--CCChHHHHhcCcHHHHHHHhhccccCchHH
Q 048113          119 ASSGAIQRLVEILNGDLADDDNSYGRIS---VQAKIDAIATLHNLSTC--HQLISPIVSSGVTYCLLQLIHSSEKSSGLT  193 (339)
Q Consensus       119 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~---~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  193 (339)
                      .+....-.|-.+|...+         .+   ...|..++++++.|.+.  ++....+.+.+++|..++.|..+  ++--+
T Consensus        94 l~a~iplyLyPfL~t~s---------k~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G--selSK  162 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVS---------KTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG--SELSK  162 (268)
T ss_dssp             HHTTGGGGTHHHHHCCC---------CSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS--CHHHH
T ss_pred             HHccchHHhhhhhcccc---------CCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc--cHHHH
Confidence            88887777777776632         22   45778899999999873  34556778889999999999986  35556


Q ss_pred             HHHHHHHHHhhcCCHhhhHHHHhhC-------CcHHHHHHH-hhcCChHHHHHHHHHHHHhhccCchhHHHHHHh
Q 048113          194 EKAIALLENIVSSSEDALQEIAATC-------GAIRALVET-IEEGSPQCKEHAVAILLLICKSCRDKYRSSILK  260 (339)
Q Consensus       194 ~~a~~~L~n~l~~~~~~~~~i~~~~-------g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  260 (339)
                      ..|..++. .+-.++.+-..+..+.       .++..+|.- .+.++++.-.+.+.|-..|+.+  +..|+.+..
T Consensus       163 tvAtfIlq-KIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn--~rar~aL~~  234 (268)
T 2fv2_A          163 TVATFILQ-KILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN--PRAREALRQ  234 (268)
T ss_dssp             HHHHHHHH-HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred             HHHHHHHH-HHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence            66777777 4444444444433221       234444443 3457889999999999999876  445666554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.06  E-value=0.39  Score=40.27  Aligned_cols=171  Identities=13%  Similarity=0.146  Sum_probs=107.9

Q ss_pred             HHHHHHHcCCCHH-HHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccC-----------CHHHHHHHHHHHHHh
Q 048113            3 EMLMDNLLNGERE-TQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQ-----------DYEAIEAALLSLLSL   66 (339)
Q Consensus         3 ~~Lv~~L~s~~~~-~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~A~~~L~~L   66 (339)
                      +++|..|++.... ...+-+..|+...+.    --+.| ..+|+..|+..|..-           +...+...+++|+.+
T Consensus         3 ~~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal   81 (233)
T 2f31_A            3 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   81 (233)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence            4567888765322 222223333332232    12233 467888888877531           346788899999999


Q ss_pred             ccCCcchhhHHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--c-hHHHH----------hcchHHHHHHHhc
Q 048113           67 ACGSERNKIRIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--N-KLEIA----------SSGAIQRLVEILN  132 (339)
Q Consensus        67 s~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~ll~  132 (339)
                      .. +..+...+... +++..++..|.++++.++..++..|.-++..+.  + ...|.          +..-...+++.++
T Consensus        82 mn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~  160 (233)
T 2f31_A           82 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  160 (233)
T ss_dssp             TS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHh
Confidence            98 67777777664 789999999999999999999999988886443  4 44443          1223445666665


Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-------hHHHHhcCcHHHHHHHhhcc
Q 048113          133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-------ISPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-------~~~i~~~g~i~~Lv~ll~~~  186 (339)
                      +.          .+.+.+..++..+-.+...++.       |..+...|. ..++..++..
T Consensus       161 ~~----------~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl-~~il~~l~~~  210 (233)
T 2f31_A          161 SG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL-HQVLQELREI  210 (233)
T ss_dssp             TT----------SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH-HHHHHHHHHC
T ss_pred             cC----------ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh-HHHHHHHhcc
Confidence            42          6778888777777777665543       234445564 4444555543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.06  E-value=1.4  Score=44.83  Aligned_cols=137  Identities=13%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc-cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113          145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS-SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA  223 (339)
Q Consensus       145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~  223 (339)
                      .+...++.++.++..++......    ....++.++..+.. ..+++.++..++.+++ ..+..-.......  ..+++.
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~-~~~~~l~~~~~~l--~~vl~~  533 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIG-ALSEWLADHPVMI--NSVLPL  533 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHH-HTHHHHHHCHHHH--TTTHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHH-HHHHHHHhCHHHH--HHHHHH
Confidence            57888999999999997632210    02344555555422 1125678888899998 4544322222444  368889


Q ss_pred             HHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc--CCHHHHHHHHHHHHHHhcc
Q 048113          224 LVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD--GTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       224 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~~  292 (339)
                      ++..|.+  +.++..|+.++.++|...+......+  ...+..|..++..  .+...+.....++..+...
T Consensus       534 l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          534 VLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             HHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence            9988865  88999999999999965332111100  1234445555554  3567788888888777653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.05  E-value=0.62  Score=47.93  Aligned_cols=142  Identities=8%  Similarity=0.040  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHHHHH-HH--HHHHhcCChHHHHHHhcc-----CCHHHHHHHHHHHHHhccCCcchhhHHhhcCCh
Q 048113           12 GERETQIQAANELGKLSRR-QK--HKLVERGIIAPLISMLCS-----QDYEAIEAALLSLLSLACGSERNKIRIVKSGIV   83 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~-~~--~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i   83 (339)
                      .+|..++.++.+++.++.. ..  ..-.=..+++.|+.++.+     ....++..++++++..+.--..+.. + =..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence            5899999999999999875 22  211224566777787753     2334555677888776652111111 1 11244


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh------cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS------SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~------~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      ..|+..+..+++.++..|++++.+++.  .++..+..      ...++.++..+....+       .-....+..+..++
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-------~l~~~~~~~lyeai  613 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTA-------DLQPQQVHTFYKAC  613 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-------TSCHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHH-------hCCHHHHHHHHHHH
Confidence            556666666678899999999999997  34444432      1245544443322000       04666667788888


Q ss_pred             HhhcCCC
Q 048113          158 HNLSTCH  164 (339)
Q Consensus       158 ~nLs~~~  164 (339)
                      ..+....
T Consensus       614 ~~vi~~~  620 (1023)
T 4hat_C          614 GIIISEE  620 (1023)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhC
Confidence            8876643

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.00  E-value=0.35  Score=42.55  Aligned_cols=207  Identities=12%  Similarity=0.072  Sum_probs=152.2

Q ss_pred             hHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chH---HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113           75 IRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKL---EIASSGAIQRLVEILNGDLADDDNSYGRISVQAK  150 (339)
Q Consensus        75 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~---~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~  150 (339)
                      ..+...+.+..|+..|..=+-+.+..+..+..++..... .+.   ..... --+.|..++...          +++++-
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gY----------e~~diA  140 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGY----------ESPEIA  140 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGG----------GSTTTH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhh----------ccchhH
Confidence            345667899999999999899999999999888875432 221   11122 122333344443          456666


Q ss_pred             HHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh--hCCcHHHHHHHh
Q 048113          151 IDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA--TCGAIRALVETI  228 (339)
Q Consensus       151 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~--~~g~i~~Lv~lL  228 (339)
                      ..+-..|+.....+...+.+...+.+..+.+.++.+  .-++...|..++..++..+..-......  ...++...-++|
T Consensus       141 l~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll  218 (341)
T 1upk_A          141 LNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL  218 (341)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence            677777888888888888888888888999998874  5889999999999888888776666654  124567777899


Q ss_pred             hcCChHHHHHHHHHHHHhhccCch-hHHHHHHh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          229 EEGSPQCKEHAVAILLLICKSCRD-KYRSSILK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       229 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      .+++=-++..++..|..+-.+..+ ......+. ..-+..++.++++.+..+|..|-.+...+..++.
T Consensus       219 ~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          219 HSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            998888899999999988765322 12222222 3467788899999999999999999999987664

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.90  E-value=0.7  Score=41.84  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=110.9

Q ss_pred             HHHHHHHcCCCH-HHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHh
Q 048113            3 EMLMDNLLNGER-ETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSL   66 (339)
Q Consensus         3 ~~Lv~~L~s~~~-~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~L   66 (339)
                      +.++..|+++.. +...+.+..|+.-...    --+.|. .+|+..|+..|..           .+...+...+++|+.+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            346777776532 2223344444443333    113344 6778888888752           2457788899999999


Q ss_pred             ccCCcchhhHHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--c-hHHHH----------hcchHHHHHHHhc
Q 048113           67 ACGSERNKIRIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--N-KLEIA----------SSGAIQRLVEILN  132 (339)
Q Consensus        67 s~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~ll~  132 (339)
                      .. +..+...+... ..+..|+..|.++.+.++..++..|.-++..+.  + ...+.          +..-...++..++
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            88 67777777665 789999999999999999999999988886443  3 44333          2234566777776


Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC---h----HHHHhcCcHHHHHHHhhcc
Q 048113          133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL---I----SPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~---~----~~i~~~g~i~~Lv~ll~~~  186 (339)
                      +.          .+.+.+..++..+-.+...++.   |    ..+...|..+.+- -|+..
T Consensus       227 ~~----------~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~-~lr~~  276 (383)
T 3eg5_B          227 SG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELREI  276 (383)
T ss_dssp             TT----------SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH-HHTTS
T ss_pred             cc----------CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHH-HHhcC
Confidence            63          5778888777777767665443   2    3344556555444 46654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.84  E-value=0.1  Score=44.75  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=118.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcC-ChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh--
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQK-HKLVERG-IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV--   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~-~~i~~~g-~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~--   78 (339)
                      +.+...|-+.|+..+.+|+..|......+. ..+...+ .++++.--+.+.++.+...++..|..+...-.+.-..+.  
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            345677778899999999999998776633 3333333 344443234466888888888888776431011001121  


Q ss_pred             h-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 K-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      + .-.+|.|+.-+..+-+.+|..+-.++..+....      .-....+.++.-+++           .+...+..++..+
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ks-----------KN~R~R~e~l~~l  191 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKS-----------KNARQRSECLLVI  191 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGC-----------SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHcc-----------CCHHHHHHHHHHH
Confidence            1 236899999998888888888887776665311      122357778887777           7899999999998


Q ss_pred             HhhcCCCCChHHHHhcCcH---HHHHHHhhccccCchHHHHHHHHHH
Q 048113          158 HNLSTCHQLISPIVSSGVT---YCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       158 ~nLs~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ..+-......    ...++   +.+.+++.+.  +..++..|+.++.
T Consensus       192 ~~li~~~G~~----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lv  232 (266)
T 2of3_A          192 EYYITNAGIS----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLV  232 (266)
T ss_dssp             HHHHHHHCSG----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC----ccccccchHHHHHHHcCC--CHHHHHHHHHHHH
Confidence            8874421111    13467   8999999874  5889999988887

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.82  E-value=1.8  Score=44.00  Aligned_cols=136  Identities=10%  Similarity=-0.006  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHh---hccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcH
Q 048113          145 ISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLI---HSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAI  221 (339)
Q Consensus       145 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll---~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i  221 (339)
                      .+...++.|+.++..++.......    ...++.++.++   ...+.++.++..++.+++ ..+..-........  .++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~-~~~~~l~~~~~~l~--~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMG-SYCNWLMENPAYIP--PAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH-HTHHHHC----CHH--HHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHH-HHHHHHhcCHHHHH--HHH
Confidence            466788999999999876322111    13444455444   211125778888999888 44432111112222  356


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc--CCHHHHHHHHHHHHHHhcc
Q 048113          222 RALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD--GTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       222 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~A~~~L~~l~~~  292 (339)
                      +.|+..| +  +.++..|+.++.++|...+......  -...+..|.+++..  .+...+..+..++..+...
T Consensus       549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~--~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          549 NLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY--ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            6677766 3  7789999999999996543322111  13456666677776  3577888888888777653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.81  E-value=0.12  Score=44.24  Aligned_cols=132  Identities=9%  Similarity=0.046  Sum_probs=97.3

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHH-HHH--HHH--h-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            8 NLLNGERETQIQAANELGKLSRR-QKH--KLV--E-RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         8 ~L~s~~~~~~~~a~~~L~~l~~~-~~~--~i~--~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      .+.+.+..+...++.+|..+... ...  .+.  + .-.+|.|+.-+.+....+|..+-.++..++.-.+..       .
T Consensus        95 r~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~  167 (266)
T 2of3_A           95 RFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------K  167 (266)
T ss_dssp             HTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------H
Confidence            34478999999999999987654 111  111  1 347788898888888889988888877776522222       2


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchH---HHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAI---QRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      +.+.++.-+.+.+...++.++..+..+-......    -..++   +.+.+++.+           .+..+|..|+.++.
T Consensus       168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D-----------~d~~VR~aAl~~lv  232 (266)
T 2of3_A          168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGD-----------KDVNVRNAAINVLV  232 (266)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGC-----------SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcC-----------CCHHHHHHHHHHHH
Confidence            5567888888899999999999998886433222    13467   999999988           89999999999998


Q ss_pred             hhc
Q 048113          159 NLS  161 (339)
Q Consensus       159 nLs  161 (339)
                      .+-
T Consensus       233 e~y  235 (266)
T 2of3_A          233 ACF  235 (266)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.76  E-value=0.69  Score=47.18  Aligned_cols=259  Identities=11%  Similarity=0.029  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh--cCChHHHHH
Q 048113           12 GERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK--SGIVPVLLE   88 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~--~g~i~~Lv~   88 (339)
                      ..+.+|..+++++..++.. ....-.-..+++.|+..++   +.++..|+.++..++...   +..+..  .+.+..+..
T Consensus       518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~---~~~l~p~~~~ll~~l~~  591 (971)
T 2x1g_F          518 LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDC---QLQLKPYADPLLNACHA  591 (971)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHH
Confidence            4889999999999999875 2211011234556666662   678999999999999732   233321  245556667


Q ss_pred             hhcCC--ChhHHHHHHHHHHHHhcCc--cchHHHHhcchHHHHHH----HhcCCCCCCCCccCCCCHHHHHH---HHHHH
Q 048113           89 VLQCQ--STTLIELTVAAMLILSSCL--ENKLEIASSGAIQRLVE----ILNGDLADDDNSYGRISVQAKID---AIATL  157 (339)
Q Consensus        89 lL~~~--~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~----ll~~~~~~~~~~~~~~~~~~~~~---a~~~L  157 (339)
                      ++.++  +...+..+..++..++..-  +.+.... ...+++++.    ++++..         .+.+.+..   ++..|
T Consensus       592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~---------~~~~~~~~~~~~l~~L  661 (971)
T 2x1g_F          592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADS---------KTPAARIRTIFRLNMI  661 (971)
T ss_dssp             HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHH
T ss_pred             HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHH
Confidence            77764  4678888888988887532  2222221 123344443    333310         03333333   33333


Q ss_pred             HhhcC--CC---CC------hH--HHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHH
Q 048113          158 HNLST--CH---QL------IS--PIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRAL  224 (339)
Q Consensus       158 ~nLs~--~~---~~------~~--~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~L  224 (339)
                      ..+..  .+   ++      ..  .-....+++.+..++.....+..+.+.++.++++ ++..-.  ..+   ...++.+
T Consensus       662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~-~~~~~~--~~~---~p~l~~~  735 (971)
T 2x1g_F          662 STLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKH-AITNLR--SSF---QPMLQDL  735 (971)
T ss_dssp             HHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHH--C-----CTHHHHH
T ss_pred             HHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHhhh--hhc---cccHHHH
Confidence            33211  11   00      01  1112357777777776543356889999999984 332110  011   2346666


Q ss_pred             HHHhhcC--ChHHHHHHHHHHHHhhccCch--hHHHHHHh--cCChHHHHHhhhc-------CCHHHHHHHHHHHHHHhc
Q 048113          225 VETIEEG--SPQCKEHAVAILLLICKSCRD--KYRSSILK--EGVMPGLLQLSVD-------GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       225 v~lL~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~--~g~i~~L~~ll~~-------~~~~~~~~A~~~L~~l~~  291 (339)
                      +..+-..  +... ..+++.+..++...+.  .....+.+  ...+.....++..       .+|++++..-..+..+..
T Consensus       736 ~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~  814 (971)
T 2x1g_F          736 CLFIVASFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIK  814 (971)
T ss_dssp             HHHHHHHCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHH
Confidence            6655321  1111 2345555555442222  12222222  1223333444433       267777777777766655


Q ss_pred             cC
Q 048113          292 CS  293 (339)
Q Consensus       292 ~~  293 (339)
                      ..
T Consensus       815 ~~  816 (971)
T 2x1g_F          815 KI  816 (971)
T ss_dssp             SS
T ss_pred             hC
Confidence            44

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.13  Score=44.23  Aligned_cols=141  Identities=11%  Similarity=0.103  Sum_probs=96.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH------HHHH--HHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR------QKHK--LVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKI   75 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~------~~~~--i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~   75 (339)
                      +-..+.+.|..++..++.++..++..      .+..  ..-..+++.|+. .+.+..+.++..|..++..+... .....
T Consensus        60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~-~~~~~  138 (278)
T 4ffb_C           60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSIT  138 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT-SSSSH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-cCcHH
Confidence            34555688999999999999988753      1222  223557777876 47888899999998888777652 21111


Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccch---HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENK---LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKID  152 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~---~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~  152 (339)
                      .     .++.++..+.+.++.++..++..|..+...-..+   ..-.-...++.+.+++.+           .++.+|..
T Consensus       139 ~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d-----------~~~~VR~a  202 (278)
T 4ffb_C          139 Q-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH-----------GDRNVRSQ  202 (278)
T ss_dssp             H-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC-----------SSHHHHHH
T ss_pred             H-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC-----------CcHHHHHH
Confidence            1     2456777788889999999999998876421111   111112345667778877           89999999


Q ss_pred             HHHHHHhhcC
Q 048113          153 AIATLHNLST  162 (339)
Q Consensus       153 a~~~L~nLs~  162 (339)
                      |..++..+-.
T Consensus       203 A~~l~~~ly~  212 (278)
T 4ffb_C          203 TMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.69  E-value=1  Score=39.65  Aligned_cols=202  Identities=13%  Similarity=0.116  Sum_probs=143.0

Q ss_pred             HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhH----Hhh-cCChHHHHHhhcCCChhHHHHHHHHHHH
Q 048113           33 HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIR----IVK-SGIVPVLLEVLQCQSTTLIELTVAAMLI  107 (339)
Q Consensus        33 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~----i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~n  107 (339)
                      ..+...+.+..|+..|..-+-+.|..+..+..++-.....++..    +.. ...+..|+..-+  ++++-..+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            34456788999999888889999999999999988854443322    222 133333333333  34455555566677


Q ss_pred             HhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhc---CcHHHHHHHh
Q 048113          108 LSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSS---GVTYCLLQLI  183 (339)
Q Consensus       108 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~---g~i~~Lv~ll  183 (339)
                      +..++.....+...+.+..+.+.++.           .+-++...|..++..|-. +......+...   .++...-++|
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~-----------~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll  218 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEM-----------STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL  218 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTC-----------SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcC-----------CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence            77777777777788888899999998           799999999999998844 44444444443   3566777888


Q ss_pred             hccccCchHHHHHHHHHHHhhcCCHhhhHHH---HhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113          184 HSSEKSSGLTEKAIALLENIVSSSEDALQEI---AATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       184 ~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i---~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  250 (339)
                      .++  +--.+++++..|+. +-.+..|...+   +....-+..+..+|++.++.+|..|.-+..-+..++
T Consensus       219 ~S~--NYVTkRQSlKLLge-lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          219 HSE--NYVTKRQSLKLLGE-LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             TCS--SHHHHHHHHHHHHH-HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             cCC--cchhHHHHHHHHHH-HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            774  45678899999994 54454444333   333456888899999999999999999988877653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.66  E-value=0.012  Score=50.01  Aligned_cols=64  Identities=13%  Similarity=0.022  Sum_probs=38.1

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHH
Q 048113            7 DNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL   86 (339)
Q Consensus         7 ~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~L   86 (339)
                      .++.++++++|..|+..+               ....+..+++++++.+|..++..|   .               .+.|
T Consensus        57 ~ll~d~~~~VR~~AA~~l---------------~~~~l~~L~~D~~~~VR~~aA~~L---~---------------~~~L  103 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS---------------PVEALTPLIRDSDEVVRRAVAYRL---P---------------REQL  103 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS---------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------SGGG
T ss_pred             HHhcCCCHHHHHHHHHhC---------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------HHHH
Confidence            445667777777777643               123345566666777776666431   1               1346


Q ss_pred             HHhhcCCChhHHHHHHH
Q 048113           87 LEVLQCQSTTLIELTVA  103 (339)
Q Consensus        87 v~lL~~~~~~~~~~a~~  103 (339)
                      ..++..+++.++..++.
T Consensus       104 ~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A          104 SALMFDEDREVRITVAD  120 (244)
T ss_dssp             GGTTTCSCHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHH
Confidence            66667777777776665

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.26  E-value=0.35  Score=42.29  Aligned_cols=184  Identities=11%  Similarity=0.050  Sum_probs=105.6

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChH----HHHHhhcC-CChhHHHHHHHHHHHHhcCccch
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVP----VLLEVLQC-QSTTLIELTVAAMLILSSCLENK  115 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~----~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~  115 (339)
                      +..+.++++. ..+.+-.++..++.+.. ++.....+.+.+.-.    .+...+.+ ..+..+..++++++|+-..+..+
T Consensus       105 l~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          105 LQILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            3455555533 33456667777777777 466655555433222    33344433 24667889999999999888887


Q ss_pred             HHHHhc--chHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchH
Q 048113          116 LEIASS--GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGL  192 (339)
Q Consensus       116 ~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  192 (339)
                      ..+...  ..++.+...+..           .+..++..++..+.|++.. .+.+..=...-+...+..++... .+.+.
T Consensus       183 ~~l~~~~~~il~~~~~~~~~-----------~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~d~Ea  250 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSG-----------SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV-QDLEA  250 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSS-----------CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-CCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC-----------CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-CCHHH
Confidence            766642  244444444444           6889999999999999752 11111000011344455555543 46788


Q ss_pred             HHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc-CChHHHHHH
Q 048113          193 TEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHA  239 (339)
Q Consensus       193 ~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a  239 (339)
                      ...++.+|++++... .....+.+..|+-..+-...+. ..+++.+.+
T Consensus       251 lyR~LvALGtL~~~~-~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~  297 (304)
T 3ebb_A          251 TFRLLVALGTLISDD-SNAVQLAKSLGVDSQIKKYSSVSEPAKVSECC  297 (304)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-hhHHHHHHHcCHHHHHHHHHhCCCchhHHHHH
Confidence            899999999544443 4344444434444433333333 235555543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.15  E-value=1.2  Score=41.07  Aligned_cols=175  Identities=11%  Similarity=-0.000  Sum_probs=105.9

Q ss_pred             cCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHH
Q 048113           50 SQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE  129 (339)
Q Consensus        50 ~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~  129 (339)
                      .+++..+.-|++.+..+.++.|+....     ++..++.++...+..+|..|...|..++.+ +.-..     .+..|++
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence            357888889999998888877776554     456799999999999999999998888876 33332     4778899


Q ss_pred             HhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCH
Q 048113          130 ILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSE  208 (339)
Q Consensus       130 ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~  208 (339)
                      +|+.           +++.-....-.+|..|-. ++.        |.+..|..-+..+  ++.+++.++.-|+..+-.-+
T Consensus       108 lLqt-----------dd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~  166 (507)
T 3u0r_A          108 LLQT-----------DDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLP  166 (507)
T ss_dssp             HTTC-----------CCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSC
T ss_pred             HHhc-----------cchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcc
Confidence            9988           666666666566665544 332        3444555555443  46888888887764442211


Q ss_pred             -hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHH
Q 048113          209 -DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSS  257 (339)
Q Consensus       209 -~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  257 (339)
                       +....-++ .-++..+-+.|++-+..--......|..+-.......++.
T Consensus       167 ~~~l~~E~E-~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe  215 (507)
T 3u0r_A          167 DEVLTKEVE-ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ  215 (507)
T ss_dssp             TTTSCHHHH-HHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH
T ss_pred             hhhccHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH
Confidence             11111111 1234455556655443333334455544443333333333

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.64  E-value=1.7  Score=39.37  Aligned_cols=175  Identities=14%  Similarity=0.157  Sum_probs=110.8

Q ss_pred             HHHHHHHcCCCHHHH-HHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhccC-----------CHHHHHHHHHHHHH
Q 048113            3 EMLMDNLLNGERETQ-IQAANELGKLSRR-----QKHKLVERGIIAPLISMLCSQ-----------DYEAIEAALLSLLS   65 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~-~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~~-----------~~~~~~~A~~~L~~   65 (339)
                      +++|..|++.....+ .+-+..|+...+.     .+.+ . .+|+..|+.+|..-           +...+...+++|+.
T Consensus         7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka   84 (386)
T 2bnx_A            7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA   84 (386)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            456788876543322 1223333332232     3333 3 67788888877521           35678889999999


Q ss_pred             hccCCcchhhHHhhc-CChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc--c-hHHHH----------hcchHHHHHHHh
Q 048113           66 LACGSERNKIRIVKS-GIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE--N-KLEIA----------SSGAIQRLVEIL  131 (339)
Q Consensus        66 Ls~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~--~-~~~i~----------~~g~i~~Lv~ll  131 (339)
                      +.. +..+...+... +++..+...|.++.+.++..++..|..++..+.  + ...|.          +..-...++..+
T Consensus        85 lmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l  163 (386)
T 2bnx_A           85 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  163 (386)
T ss_dssp             HTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHT
T ss_pred             HhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            998 67777766655 789999999999999999999988888886443  4 33332          222455677777


Q ss_pred             cCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-------hHHHHhcCcHHHHHHHhhccccCchH
Q 048113          132 NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-------ISPIVSSGVTYCLLQLIHSSEKSSGL  192 (339)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-------~~~i~~~g~i~~Lv~ll~~~~~~~~~  192 (339)
                      .+.          .+.+.+..++..+-.+...++.       |..+...|..+ ++.-|+... ++.+
T Consensus       164 ~~~----------~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr~~~-~~~L  219 (386)
T 2bnx_A          164 KSG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIE-NEDM  219 (386)
T ss_dssp             STT----------SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCC-CHHH
T ss_pred             HcC----------ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHhccC-ChhH
Confidence            643          6788888777777777665544       34455556444 455555542 3444

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=93.74  E-value=7.1  Score=40.15  Aligned_cols=233  Identities=13%  Similarity=0.067  Sum_probs=114.0

Q ss_pred             ChHHHHHHhccCCHHHHHHHHHHHHHhccC---CcchhhHHhh--cCChHHHHHhhcCCC-------------------h
Q 048113           40 IIAPLISMLCSQDYEAIEAALLSLLSLACG---SERNKIRIVK--SGIVPVLLEVLQCQS-------------------T   95 (339)
Q Consensus        40 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~~i~~--~g~i~~Lv~lL~~~~-------------------~   95 (339)
                      .++.++.....++.++...++.....++..   .+..+..+..  ...++.++..+..++                   .
T Consensus       345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~  424 (1049)
T 3m1i_C          345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES  424 (1049)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence            345555555566778888888777776651   0111222111  123344444432211                   0


Q ss_pred             ---hHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCCh-HHHH
Q 048113           96 ---TLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLI-SPIV  171 (339)
Q Consensus        96 ---~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~  171 (339)
                         ..+..+..+|..++.....  .+ -.-..+.+-+.+.+..         .+...++.++.++..++..-... ..-.
T Consensus       425 d~~~~~~~~~~~L~~l~~~~~~--~~-l~~v~~~l~~~l~~~~---------~~W~~~eaal~algsia~~~~~~~e~~~  492 (1049)
T 3m1i_C          425 DTIQLYKSEREVLVYLTHLNVI--DT-EEIMISKLARQIDGSE---------WSWHNINTLSWAIGSISGTMSEDTEKRF  492 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHH--HH-HHHHHHHHHHHHTSSS---------CCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHccCHH--HH-HHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHHhcccCchhhHHH
Confidence               1233455666666532111  00 0112333334443211         57888999999999887532111 1100


Q ss_pred             hcCcHHHHHHHhhcc---ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          172 SSGVTYCLLQLIHSS---EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       172 ~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                      -..+++.|..+....   .++..++..++.+++ ..+..-........  .+++.+++.+.++++.++..|+.++.++|.
T Consensus       493 l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg-ry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          493 VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG-QYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH-HCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccchHHHHHHHHHHHH-HHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            112333333322210   011222334667777 34332222223332  467778888888889999999999999997


Q ss_pred             cCchhHHHHHHh------cCChHH----HHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          249 SCRDKYRSSILK------EGVMPG----LLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       249 ~~~~~~~~~~~~------~g~i~~----L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ..    +..+..      ...++.    |..++..-+.........++..+..
T Consensus       570 ~~----~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          570 KC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            53    233331      022333    3344444445445555555555544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.36  E-value=0.94  Score=37.89  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             HHHHhcCcHHHHHHHhhccc---------cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113          168 SPIVSSGVTYCLLQLIHSSE---------KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH  238 (339)
Q Consensus       168 ~~i~~~g~i~~Lv~ll~~~~---------~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  238 (339)
                      +.+ ..||+..|+..|....         .+......++.+|. .+..+..+...+..+.+++..|...|.++++.++..
T Consensus        38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLk-almn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~  115 (233)
T 2f31_A           38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK-AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  115 (233)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHH-HHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred             HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH-HHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            344 3577888887775421         12355677888898 777888888888887889999999998889999999


Q ss_pred             HHHHHHHhhccCchhH-HHHHH----------hcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcch----hhhh
Q 048113          239 AVAILLLICKSCRDKY-RSSIL----------KEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSR----SKQL  302 (339)
Q Consensus       239 a~~~L~~l~~~~~~~~-~~~~~----------~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~----~~~~  302 (339)
                      ++..|..+|..+++.+ ...+.          +..-..++++.+. +.+...+......+..+...++.-..    +.++
T Consensus       116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef  195 (233)
T 2f31_A          116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  195 (233)
T ss_dssp             HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            9999998987653212 22222          2234555666665 34555666666666666665542111    2345


Q ss_pred             hhHHHHHHHHHHH
Q 048113          303 KNELVEQIMQEID  315 (339)
Q Consensus       303 ~~~~~~~i~~~~~  315 (339)
                      ..-++..++..+.
T Consensus       196 ~~~Gl~~il~~l~  208 (233)
T 2f31_A          196 MRLGLHQVLQELR  208 (233)
T ss_dssp             HHTTHHHHHHHHH
T ss_pred             HHCChHHHHHHHh
Confidence            5667777777765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=93.25  E-value=1.9  Score=38.16  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=94.5

Q ss_pred             HHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCcc
Q 048113           63 LLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSY  142 (339)
Q Consensus        63 L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  142 (339)
                      |.+|-.++...-.-+++.+|+..+...++.++.++....+..|...|....-+. .--...+|-++..+.-+        
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h--------  336 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIH--------  336 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHC--------
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccC--------
Confidence            445555467778889999999999999999999999999999988876443211 11234678888877654        


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCC-CChHHHHhcCcHHHHHHHhhcccc-----CchHHHHHHHHHHH
Q 048113          143 GRISVQAKIDAIATLHNLSTCH-QLISPIVSSGVTYCLLQLIHSSEK-----SSGLTEKAIALLEN  202 (339)
Q Consensus       143 ~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~~a~~~L~n  202 (339)
                        ++.++.....+.|.|..... ..++..+..|+++.|-+.+..+.+     +..-+..++++++|
T Consensus       337 --~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          337 --PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             --CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             --CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence              78999999999999997654 556666778999999988765422     22334556677774

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.23  E-value=1.4  Score=39.87  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=99.9

Q ss_pred             hHHHHhcCcHHHHHHHhhcc---------ccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          167 ISPIVSSGVTYCLLQLIHSS---------EKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       167 ~~~i~~~g~i~~Lv~ll~~~---------~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      .+.++ .+|+..|+.+|..-         ..+......++.+|. .+-.+..+...+..+..++..|...+.+..+.++.
T Consensus       103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk-almN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~  180 (383)
T 3eg5_B          103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK-AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  180 (383)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH-HHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH-HHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence            34555 66788888888531         112356677888898 67788888888888889999999999999999999


Q ss_pred             HHHHHHHHhhccCc-hhHHHHHHh----------cCChHHHHHhhhc-CCHHHHHHHHHHHHHHhccCCCcchh----hh
Q 048113          238 HAVAILLLICKSCR-DKYRSSILK----------EGVMPGLLQLSVD-GTWRAKNMARDLLLLLRDCSSFGSRS----KQ  301 (339)
Q Consensus       238 ~a~~~L~~l~~~~~-~~~~~~~~~----------~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~~~~----~~  301 (339)
                      .++..|..+|..+. ..+.+.+++          ..-...++..+.+ .+...+..+...+..+...++....+    .+
T Consensus       181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e  260 (383)
T 3eg5_B          181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE  260 (383)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999998764 211232222          2456677777775 46666676677776666655422112    33


Q ss_pred             hhhHHHHHHHHHHH
Q 048113          302 LKNELVEQIMQEID  315 (339)
Q Consensus       302 ~~~~~~~~i~~~~~  315 (339)
                      +..-++..++..+.
T Consensus       261 f~~~Gl~~il~~lr  274 (383)
T 3eg5_B          261 LMRLGLHQVLQELR  274 (383)
T ss_dssp             HHHTTHHHHHHHHT
T ss_pred             HHHCChHHHHHHHh
Confidence            44566666666654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.68  E-value=6.2  Score=36.49  Aligned_cols=119  Identities=19%  Similarity=0.200  Sum_probs=76.6

Q ss_pred             CCChhHHHHHHHHHHHHhc-CccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHH
Q 048113           92 CQSTTLIELTVAAMLILSS-CLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPI  170 (339)
Q Consensus        92 ~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i  170 (339)
                      ++++..+..|+..+..... .++..     ..++..+++++..           ++..+|..|++.|..+|.+ ++...+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcED-----------ed~~IR~qaik~Lp~~ck~-~~i~ki  101 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCED-----------EDVSIRRQAIKELPQFATG-ENLPRV  101 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTC-----------SSHHHHHHHHHHGGGGCCT-TCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhc-----------ccHHHHHHHHHhhHHHhhh-hhhhhH
Confidence            4567888888888887764 44332     2368999999999           8999999999999999998 554444


Q ss_pred             HhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113          171 VSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL  243 (339)
Q Consensus       171 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  243 (339)
                           ++.|+++|+..+  ..-....-.+|..++..++         .+.+..|...+.++++.+++.++.-|
T Consensus       102 -----aDvL~QlLqtdd--~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~~e~~Rer~lkFi  158 (507)
T 3u0r_A          102 -----ADILTQLLQTDD--SAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQGEDIVRERAIKFL  158 (507)
T ss_dssp             -----HHHHHHHTTCCC--HHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhccc--hHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence                 567899998742  2222222222221222222         23445555555555666666665555

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.20  E-value=5.9  Score=35.14  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             HHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhh-cCChH
Q 048113          157 LHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIE-EGSPQ  234 (339)
Q Consensus       157 L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~  234 (339)
                      |.||-. +.+..+-++..+++..+...+...  +.++.+..+..|- .++....-...-.  ...+|-+++.+. +++.+
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp--N~~l~RaG~KLLL-QVSDaksL~~t~L--~e~LPFi~~~i~~h~eDd  340 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP--NNDLIRAGCKLLL-QVSDAKALAKTPL--ENILPFLLRLIEIHPDDE  340 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHH-HHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecC--CcHHHHhhhheee-eecchHHHhhccc--cccchHHHHHhccCCCcc
Confidence            344444 445567789999999999999874  5778888777776 4544332221111  245677777665 57788


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCC-------HHHHHHHHHHHHHHhc----------------
Q 048113          235 CKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGT-------WRAKNMARDLLLLLRD----------------  291 (339)
Q Consensus       235 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~A~~~L~~l~~----------------  291 (339)
                      +.....+.|.|......+ .++..+..|+++.|...+...+       ..-+..|++++.|.-+                
T Consensus       341 vvYSGTGFLSNVVAHKq~-VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGq  419 (619)
T 3c2g_A          341 VIYSGTGFLSNVVAHKQH-VKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGE  419 (619)
T ss_dssp             HHHHHHHHHHHHSTTCHH-HHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSC
T ss_pred             eEEecchHHHHHHhcccc-hHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCc
Confidence            889999999999887644 7888889999999998865432       3335666666544311                


Q ss_pred             ---cCCCcc--hhhhhhhHHHHHHHHHHHhcCccc
Q 048113          292 ---CSSFGS--RSKQLKNELVEQIMQEIDAEGDTV  321 (339)
Q Consensus       292 ---~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~  321 (339)
                         .+++++  ..+.+..+.+.++|..++.||=++
T Consensus       420 r~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv  454 (619)
T 3c2g_A          420 TKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDT  454 (619)
T ss_dssp             CCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CC
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence               011111  124456799999999998888444

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=91.81  E-value=1.9  Score=44.40  Aligned_cols=142  Identities=11%  Similarity=0.025  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCC-hHHHHhcCcHHHHHHHhhccc-cCch--HHHHHHHHHHHhhcCCHhhhHHHHhhCCc
Q 048113          145 ISVQAKIDAIATLHNLSTCHQL-ISPIVSSGVTYCLLQLIHSSE-KSSG--LTEKAIALLENIVSSSEDALQEIAATCGA  220 (339)
Q Consensus       145 ~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~-~~~~--~~~~a~~~L~n~l~~~~~~~~~i~~~~g~  220 (339)
                      .+...++.++.+++.++..... ...-.=..+++.|+.++.... ++.+  ++..++.+++ ..+..-........  ..
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG-ry~~wl~~~~~~L~--~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG-QYPRFLKAHWNFLR--TV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-TCHHHHHHCHHHHH--HH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH-HHHHHHhccHHHHH--HH
Confidence            5799999999999999864422 121111235777888775311 0122  3334557777 33332222223332  35


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHh------cCChHHHHH----hhhcCCHHHHHHHHHHHHHHh
Q 048113          221 IRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILK------EGVMPGLLQ----LSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       221 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~g~i~~L~~----ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      +..|++.+.++++.++..|++++.++|..    ++..+..      ...++.++.    ....-++.....+..++..+.
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~----c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQK----CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH----HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHH----HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            55666666667789999999999999964    3344432      123444433    333356666677777777776


Q ss_pred             ccC
Q 048113          291 DCS  293 (339)
Q Consensus       291 ~~~  293 (339)
                      ...
T Consensus       618 ~~~  620 (1023)
T 4hat_C          618 SEE  620 (1023)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            654

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.41  E-value=0.93  Score=39.28  Aligned_cols=141  Identities=11%  Similarity=0.074  Sum_probs=89.8

Q ss_pred             HHHHcCC------CHHHHHHHHHHHHHHHHH--HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhh
Q 048113            6 MDNLLNG------ERETQIQAANELGKLSRR--QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI   75 (339)
Q Consensus         6 v~~L~s~------~~~~~~~a~~~L~~l~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~   75 (339)
                      .++++++      +.+....|+..|-.++++  +-..|.+  -..+..|+ +..+.++.+++.|++++...-.+||..-.
T Consensus        28 r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~  106 (315)
T 3qml_C           28 RNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVE  106 (315)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHH
Confidence            4556666      556678899999999987  3334443  44444444 34456778999999999999999998877


Q ss_pred             HHhhc--CChHHHHHhhcC-------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113           76 RIVKS--GIVPVLLEVLQC-------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS  146 (339)
Q Consensus        76 ~i~~~--g~i~~Lv~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~  146 (339)
                      .+.+.  ..+..+..-|..       ....++..-+.+|--|..+..   .+ ...++..|.+++....         .+
T Consensus       107 ~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~---------~d  173 (315)
T 3qml_C          107 FINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNN---------KD  173 (315)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTT---------TC
T ss_pred             HHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCC---------CC
Confidence            77664  334444433322       233455666677777766541   11 2345677777776510         37


Q ss_pred             HHHHHHHHHHHHhh
Q 048113          147 VQAKIDAIATLHNL  160 (339)
Q Consensus       147 ~~~~~~a~~~L~nL  160 (339)
                      +.++..++..+..+
T Consensus       174 ~~~k~Kvl~li~d~  187 (315)
T 3qml_C          174 KQLQIKVLELISKI  187 (315)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888777776655

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=90.88  E-value=0.11  Score=44.08  Aligned_cols=62  Identities=11%  Similarity=0.057  Sum_probs=33.4

Q ss_pred             HHHHHhccCCHHHHHHHHHHH-----HHhccC-CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHH
Q 048113           43 PLISMLCSQDYEAIEAALLSL-----LSLACG-SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAA  104 (339)
Q Consensus        43 ~Lv~lL~~~~~~~~~~A~~~L-----~~Ls~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~  104 (339)
                      .|..+++++++.+|..++..+     ..+..+ ++..|..+...-..+.+..++..++..++..++..
T Consensus       126 ~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~  193 (244)
T 1lrv_A          126 QLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  193 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHh
Confidence            344555666666666665531     122221 22334444444334555566677778888777754

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=90.32  E-value=8.6  Score=39.68  Aligned_cols=214  Identities=15%  Similarity=0.121  Sum_probs=123.8

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCC----cchhhHHhh
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGS----ERNKIRIVK   79 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~----~~~~~~i~~   79 (339)
                      ++.-+.+++.+.|..|-..|..+-.       ..+++..+..+|.. .++++|.-|+.+|.+.-...    +.....-++
T Consensus        33 lv~~ly~p~~~~r~qA~~~L~q~q~-------sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR  105 (1073)
T 3gjx_A           33 VVNCLYHGEGAQQRMAQEVLTHLKE-------HPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK  105 (1073)
T ss_dssp             HHHTTTCSSHHHHHHHHHHHHTSSC-------CSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHc-------CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH
Confidence            4444456677777777777765542       34555555555644 48899999999998877621    122222223


Q ss_pred             cCChHHHHHhhcC-----CChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           80 SGIVPVLLEVLQC-----QSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        80 ~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                      ...+..+...-..     .++.++...+.++..++..+ +..    =.+.++-++..++.            ++......
T Consensus       106 ~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~~------------~~~~~~~~  169 (1073)
T 3gjx_A          106 KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASRT------------SESLCQNN  169 (1073)
T ss_dssp             HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHH------------CHHHHHHH
T ss_pred             HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhCC------------CHHHHHHH
Confidence            3344444443222     23455566666776666321 111    13467777777754            45566777


Q ss_pred             HHHHHhhcCC-CC--------C-----hHHHHhcCcHHHHHHH----hhccccCchHHHHHHHHHHHhhcCCHhhhHHHH
Q 048113          154 IATLHNLSTC-HQ--------L-----ISPIVSSGVTYCLLQL----IHSSEKSSGLTEKAIALLENIVSSSEDALQEIA  215 (339)
Q Consensus       154 ~~~L~nLs~~-~~--------~-----~~~i~~~g~i~~Lv~l----l~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~  215 (339)
                      +.+|..|+.. -+        .     +..+.+.  ++.++.+    +.+. .+..+...++.++...++.-+-  ..++
T Consensus       170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~i--~~i~  244 (1073)
T 3gjx_A          170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIPL--GYIF  244 (1073)
T ss_dssp             HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT--HHHH
T ss_pred             HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcCH--HHhc
Confidence            7777777642 11        1     1223332  4444444    4433 3567788888999944443332  3456


Q ss_pred             hhCCcHHHHH-HHhhcCChHHHHHHHHHHHHhhcc
Q 048113          216 ATCGAIRALV-ETIEEGSPQCKEHAVAILLLICKS  249 (339)
Q Consensus       216 ~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~  249 (339)
                      + .+.++.|+ .+|  +++..+..|+.||..+...
T Consensus       245 ~-~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          245 E-TKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             S-SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred             c-chHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence            5 67777774 555  4678999999999998764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.73  E-value=4.2  Score=36.71  Aligned_cols=142  Identities=17%  Similarity=0.122  Sum_probs=92.5

Q ss_pred             cCcHHHHHHHhhcc----c-----cCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHH
Q 048113          173 SGVTYCLLQLIHSS----E-----KSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAIL  243 (339)
Q Consensus       173 ~g~i~~Lv~ll~~~----~-----~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  243 (339)
                      .+|+..|+.+|...    .     .+......++.+|. .+..+..+...+..+.+++..|...|.+.++.++..++..|
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLk-almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL  124 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK-AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  124 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHH-HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH-HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            46777777777432    0     12355677888898 77788888888888788999999999888899999999999


Q ss_pred             HHhhccCchhH-HHHHH----------hcCChHHHHHhhh-cCCHHHHHHHHHHHHHHhccCCCcch----hhhhhhHHH
Q 048113          244 LLICKSCRDKY-RSSIL----------KEGVMPGLLQLSV-DGTWRAKNMARDLLLLLRDCSSFGSR----SKQLKNELV  307 (339)
Q Consensus       244 ~~l~~~~~~~~-~~~~~----------~~g~i~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~----~~~~~~~~~  307 (339)
                      ..+|..+++.+ ...+.          +..-...++.-+. +.+...+..+...+..+...++.-..    +..+..-++
T Consensus       125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL  204 (386)
T 2bnx_A          125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  204 (386)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence            88988654222 22222          2234555666655 44556666666666666665542111    133455566


Q ss_pred             HHHHHHHH
Q 048113          308 EQIMQEID  315 (339)
Q Consensus       308 ~~i~~~~~  315 (339)
                      ..++..+.
T Consensus       205 ~~il~~Lr  212 (386)
T 2bnx_A          205 HQVLQELR  212 (386)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            66665554

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=89.30  E-value=9.6  Score=38.96  Aligned_cols=304  Identities=10%  Similarity=0.035  Sum_probs=146.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CcchhhHHhhcCChHHHH
Q 048113           11 NGERETQIQAANELGKLSRR-QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACG--SERNKIRIVKSGIVPVLL   87 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~~i~~~g~i~~Lv   87 (339)
                      +.++..+..+++++.....- .-..+.+.+.++.+..+|.+  ++++..|+.+|..+...  +++.+..++..=.+...+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~  281 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF  281 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence            46777777888888776654 34455567788888888865  89999999999888764  233343333320111112


Q ss_pred             Hhhc--CCChhHHHHHHHHHHHHh------cCcc------chHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHH
Q 048113           88 EVLQ--CQSTTLIELTVAAMLILS------SCLE------NKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKI  151 (339)
Q Consensus        88 ~lL~--~~~~~~~~~a~~~L~nLs------~~~~------~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~  151 (339)
                      ..+.  ..+.+..+.-+..+..+.      ...+      .+....  -.+.++.++..+..           ++.++..
T Consensus       282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~-----------~~deVs~  350 (980)
T 3ibv_A          282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD-----------DYDETST  350 (980)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC-----------SSHHHHH
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC-----------CchhHHH
Confidence            2122  345555443333332221      1111      011111  13567788888877           5667766


Q ss_pred             HHHHHHHhhcCC----CC---ChHHHHhc--CcHHHHHHHhhcccc----C----ch-----HHHHHHHHHHHhhcC-CH
Q 048113          152 DAIATLHNLSTC----HQ---LISPIVSS--GVTYCLLQLIHSSEK----S----SG-----LTEKAIALLENIVSS-SE  208 (339)
Q Consensus       152 ~a~~~L~nLs~~----~~---~~~~i~~~--g~i~~Lv~ll~~~~~----~----~~-----~~~~a~~~L~n~l~~-~~  208 (339)
                      .++..+..+...    +.   ........  ..++.+++-++.+++    +    ++     -.++.++++...++. .+
T Consensus       351 ~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~  430 (980)
T 3ibv_A          351 AVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDS  430 (980)
T ss_dssp             TTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            666665544321    11   11111110  133333334433211    0    00     122233333312211 11


Q ss_pred             hhhHHHHhhCCcHHHHH-HHhhc---CChHHHHHHHHHHHHhhccCchhHHHHHHhcC----ChHHHHHhhh-----cCC
Q 048113          209 DALQEIAATCGAIRALV-ETIEE---GSPQCKEHAVAILLLICKSCRDKYRSSILKEG----VMPGLLQLSV-----DGT  275 (339)
Q Consensus       209 ~~~~~i~~~~g~i~~Lv-~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g----~i~~L~~ll~-----~~~  275 (339)
                      +..-...  ...+..++ +.+..   .+=...|.++.+|..++...........-+..    .++.|..++.     ...
T Consensus       431 ~~~l~~~--~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h  508 (980)
T 3ibv_A          431 SLFSSYM--YSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH  508 (980)
T ss_dssp             HHHHHHH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC
T ss_pred             HHHHHHH--HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC
Confidence            1111100  01222222 22321   12345688888888887653321111000112    3344555544     567


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH----h--cCcccchHHHHHHHHHHHHh
Q 048113          276 WRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID----A--EGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       276 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~----~--~~~~~~~~a~~~l~~~v~~~  336 (339)
                      +.++..+.+++...++.=.   ..    ...++.++..+.    +  ...+++..|..++..+++..
T Consensus       509 p~V~~~~~~~l~rys~~~~---~~----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          509 PLVQLLYMEILVRYASFFD---YE----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHHHHHHHTGGGGG---TC----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHh---cC----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            8899999999977765322   11    133444444442    1  12567888888888888754

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=89.05  E-value=1.1  Score=34.26  Aligned_cols=73  Identities=11%  Similarity=0.253  Sum_probs=59.8

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|.+-|.++++.++..|+..|-.+..+.+......+.....+..|++++...++.++.+...++...+.
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            3566777778888999999999998888887777677666667788888888888899999999999987764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=88.22  E-value=7.5  Score=40.11  Aligned_cols=157  Identities=13%  Similarity=0.071  Sum_probs=97.0

Q ss_pred             CCHHHHHHHHHHHHHHHHH-HHH-HHHhcCChHHHHHHh----ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113           12 GERETQIQAANELGKLSRR-QKH-KLVERGIIAPLISML----CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV   85 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~-~~~-~i~~~g~i~~Lv~lL----~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~   85 (339)
                      +++..+..+.-+++.+... +.. .......++.+.+++    +..+.+.+..++++|+|+...           ..++.
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~  475 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKK  475 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHH
Confidence            3555666677777777655 211 111223456665544    556788889999999999882           25677


Q ss_pred             HHHhhcC-------CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           86 LLEVLQC-------QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        86 Lv~lL~~-------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      |.+++..       ....++..|+++|.+++...+.+       +-+.+.++..+..         .++++|..|+..|.
T Consensus       476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~---------e~~EvRiaA~~~Lm  539 (1056)
T 1lsh_A          476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVA---------IKSELRIRSCIVFF  539 (1056)
T ss_dssp             HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTT---------SCHHHHHHHHHHHH
T ss_pred             HHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCC---------CChHHHHHHHHHHH
Confidence            7777642       13467888999988887543211       3566788886643         78999999998886


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcC
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSS  206 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~  206 (339)
                      .-  +|.       ...+..+...+... ++..+..-....|. .++.
T Consensus       540 ~t--~P~-------~~~l~~ia~~l~~E-~~~QV~sfv~S~l~-sla~  576 (1056)
T 1lsh_A          540 ES--KPS-------VALVSMVAVRLRRE-PNLQVASFVYSQMR-SLSR  576 (1056)
T ss_dssp             HT--CCC-------HHHHHHHHHHHTTC-SCHHHHHHHHHHHH-HHTT
T ss_pred             HH--CcC-------HHHHHHHHHHHhhC-chHHHHHHHHHHHH-HHHh
Confidence            53  232       12345556666542 34555555556666 3443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=87.04  E-value=1.9  Score=33.78  Aligned_cols=73  Identities=8%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc-CCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD-GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|.+-|+++++.++..|+..|-.+..+.+..+...+.....+..|++++.. .++.++.+...++..-+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            3566777788889999999999999888887777677777777888889888875 578999999998877765

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=87.02  E-value=14  Score=31.92  Aligned_cols=138  Identities=9%  Similarity=0.008  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh-hCCcHHHH
Q 048113          146 SVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA-TCGAIRAL  224 (339)
Q Consensus       146 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~-~~g~i~~L  224 (339)
                      +......|+..|-.+|.+-+.-..|.+.. .+.|-.++.....+..+++.|.++++.-|..+|+....+.+ ...++..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            45567789999999988776666666532 23333333221134678999999999666677777766654 24566666


Q ss_pred             HHHhhc-------CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC--CHHHHHHHHHHHHHHh
Q 048113          225 VETIEE-------GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG--TWRAKNMARDLLLLLR  290 (339)
Q Consensus       225 v~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~A~~~L~~l~  290 (339)
                      ..-|..       .....+..-+++|-.|...+ ...     ...++..|.++....  ++.+|.++..++..+-
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            554433       23455666788888888764 212     245678888887777  9999999999886665

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=86.89  E-value=1.7  Score=33.50  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|.+-|+++++.++..|+..|-.+..+.+..+...+.....+..|++++..      .++.++.+...++..-+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999998888777787778788899999998864      478899999999988775

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=86.62  E-value=2.1  Score=33.08  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh------cCCHHHHHHHHHHHHHHhc
Q 048113          219 GAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV------DGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       219 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~~~~~A~~~L~~l~~  291 (339)
                      .++..|.+-++++++.++..|+..|-.+..+.+..+...+....++..|++++.      ..++.++.+...++..-+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            356777788888999999999999999888887777777777888999999985      3578899999999988775

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=86.18  E-value=5.5  Score=33.16  Aligned_cols=137  Identities=12%  Similarity=0.107  Sum_probs=83.4

Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhcc-CCcchhhHHhhcCChHH
Q 048113            8 NLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLAC-GSERNKIRIVKSGIVPV   85 (339)
Q Consensus         8 ~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~~i~~~g~i~~   85 (339)
                      +..+...++|..|+..|..+ .      .....++.+.. +-.+++-.+++.++.++..++. ..++.        .++.
T Consensus        79 L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~  143 (240)
T 3l9t_A           79 AYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPI  143 (240)
T ss_dssp             HHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHH
T ss_pred             HHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHH
Confidence            33456667788888766555 1      11224444444 3345677899999999988875 23331        5677


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-C
Q 048113           86 LLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-H  164 (339)
Q Consensus        86 Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~  164 (339)
                      +...+.++++.+|..|...+.--+..+..+   .+...+-+++.-+..+          .+.-++....+.|..+++. |
T Consensus       144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D----------~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKED----------VSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             HHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTC----------SCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHhhhCH
Confidence            888888999999998887764322111100   1122223333333332          7888999999999999984 5


Q ss_pred             CChHHHHh
Q 048113          165 QLISPIVS  172 (339)
Q Consensus       165 ~~~~~i~~  172 (339)
                      +-...+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444444

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=86.01  E-value=6.2  Score=40.74  Aligned_cols=127  Identities=14%  Similarity=0.157  Sum_probs=88.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhcc-------CCHHHHHHHHHHHHHhccCCcchhhH
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCS-------QDYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      .|.+.+.+++.+.+..++++|+|+-.        ...++.|..++..       ....++..|+++|+.++...|..   
T Consensus       444 ~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---  512 (1056)
T 1lsh_A          444 LLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---  512 (1056)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred             HHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---
Confidence            34555567788888889999988763        3456777777642       24578889999999999743222   


Q ss_pred             HhhcCChHHHHHhhc--CCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           77 IVKSGIVPVLLEVLQ--CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                           +-+.+.++..  ..++++|..|+..|..  .+++       ...+..+...+..+          .+..+.....
T Consensus       513 -----v~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~-------~~~l~~ia~~l~~E----------~~~QV~sfv~  568 (1056)
T 1lsh_A          513 -----VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-------VALVSMVAVRLRRE----------PNLQVASFVY  568 (1056)
T ss_dssp             -----HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-------HHHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred             -----HHHHHHHHhcCCCCChHHHHHHHHHHHH--HCcC-------HHHHHHHHHHHhhC----------chHHHHHHHH
Confidence                 2245777774  3478899888777643  2222       12477888888775          6889999999


Q ss_pred             HHHHhhcCCCC
Q 048113          155 ATLHNLSTCHQ  165 (339)
Q Consensus       155 ~~L~nLs~~~~  165 (339)
                      ..|.+++....
T Consensus       569 S~l~sla~s~~  579 (1056)
T 1lsh_A          569 SQMRSLSRSSN  579 (1056)
T ss_dssp             HHHHHHTTCCS
T ss_pred             HHHHHHHhcCC
Confidence            99999987543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=85.57  E-value=16  Score=38.17  Aligned_cols=211  Identities=11%  Similarity=0.052  Sum_probs=117.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHh--ccCCHHHHHHHHHHHHHhccC-----CcchhhHHhhcCChH
Q 048113           12 GERETQIQAANELGKLSRRQKHKLVERGIIAPLISML--CSQDYEAIEAALLSLLSLACG-----SERNKIRIVKSGIVP   84 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~-----~~~~~~~i~~~g~i~   84 (339)
                      .+.+.|..|-..|..+-.       ..+.+..+...|  .+.++.+|.-|+..|.+....     +++.+..+ +...+.
T Consensus        25 ~~~~~r~~Ae~~L~~~~~-------~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~   96 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKE-------KCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVME   96 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHH-------HCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHH
T ss_pred             CChHHHHHHHHHHHHHHh-------CchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHH
Confidence            367778888888877643       223555555544  345889999999999987642     22333333 223333


Q ss_pred             HHHHhhcC---CChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           85 VLLEVLQC---QSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        85 ~Lv~lL~~---~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      .+...-..   .++.++...+.++..++..+ +..    =.+.++.|++++++            ++..+..++.+|..|
T Consensus        97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~------------~~~~~e~~L~iL~~L  160 (1204)
T 3a6p_A           97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ------------GETQTELVMFILLRL  160 (1204)
T ss_dssp             HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT------------CHHHHHHHHHHHHHH
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC------------CHHHHHHHHHHHHHH
Confidence            33332111   34667888888888877532 211    14578888888866            455677788888887


Q ss_pred             cCC---CCC----hH-----HHHhc--CcHHHHHHHhhcc-----------------ccCchHHHHHHHHHHHhhcCCHh
Q 048113          161 STC---HQL----IS-----PIVSS--GVTYCLLQLIHSS-----------------EKSSGLTEKAIALLENIVSSSED  209 (339)
Q Consensus       161 s~~---~~~----~~-----~i~~~--g~i~~Lv~ll~~~-----------------~~~~~~~~~a~~~L~n~l~~~~~  209 (339)
                      +..   .+.    +.     .+.+.  .+++.+..++.+.                 ..+..+...++.++.+.+...+.
T Consensus       161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~  240 (1204)
T 3a6p_A          161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM  240 (1204)
T ss_dssp             HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred             HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH
Confidence            532   111    11     12222  2233333444321                 01234666777777733222222


Q ss_pred             hhHHHHhhC-CcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113          210 ALQEIAATC-GAIRALVETIEEGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       210 ~~~~i~~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  250 (339)
                        ..+.+.. ..++.+..++.  ++.++..|+.+|..+....
T Consensus       241 --~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          241 --SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             --HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             --HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence              1222211 25555555544  4678889999999888643

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=85.17  E-value=2.1  Score=33.86  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=60.3

Q ss_pred             cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113          220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~  291 (339)
                      ++..|.+-|+++++.++..|+..|-.+..+++..+...+.....+..|++++..      .++.++.+++.++..-+.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            567788888899999999999999888888777677777778899999999862      468899999999988775

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=84.54  E-value=40  Score=34.78  Aligned_cols=219  Identities=9%  Similarity=0.036  Sum_probs=126.1

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcC-CChhHHHHHHHHHHHHhcC-----ccc
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQC-QSTTLIELTVAAMLILSSC-----LEN  114 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~-----~~~  114 (339)
                      +..++..+-+++++.|..|-..|..+-. +++..         +.+..+|.+ .++.++..|+.+|.+....     ++.
T Consensus        30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw---------~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e   99 (1073)
T 3gjx_A           30 LDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW---------TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN   99 (1073)
T ss_dssp             HHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH---------HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH---------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence            4445555555677788888888887777 45443         333344443 4788999999999887642     111


Q ss_pred             hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC--CCCChHHHHhcCcHHHHHHHhhccccCchH
Q 048113          115 KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST--CHQLISPIVSSGVTYCLLQLIHSSEKSSGL  192 (339)
Q Consensus       115 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  192 (339)
                      ...-.+...+..+.+.-.++.      ....++.++...+.++..+..  .++.=     .+.++.++..+..+   ...
T Consensus       100 ~~~~LR~~Ll~~l~~~~~~~~------~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~---~~~  165 (1073)
T 3gjx_A          100 QCEGIKKYVVGLIIKTSSDPT------CVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTS---ESL  165 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHTCGG------GGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHC---HHH
T ss_pred             HHHHHHHHHHHHHHHHccCcc------ccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCC---HHH
Confidence            122223344555554432210      000256677777777777764  23321     24667777777642   344


Q ss_pred             HHHHHHHHHHhhcCC----H-----hh-----hHHHHhhCCcHHHHHHH----hhc-CChHHHHHHHHHHHHhhccCchh
Q 048113          193 TEKAIALLENIVSSS----E-----DA-----LQEIAATCGAIRALVET----IEE-GSPQCKEHAVAILLLICKSCRDK  253 (339)
Q Consensus       193 ~~~a~~~L~n~l~~~----~-----~~-----~~~i~~~~g~i~~Lv~l----L~~-~~~~~~~~a~~~L~~l~~~~~~~  253 (339)
                      ....+.+|. .++..    .     ..     +..+..   -++.++.+    |+. .++.+...++.++..+...-+. 
T Consensus       166 ~~~~L~IL~-~L~EEV~d~~~~~l~~~r~~~lk~~L~~---~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-  240 (1073)
T 3gjx_A          166 CQNNMVILK-LLSEEVFDFSSGQITQVKAKHLKDSMCN---EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-  240 (1073)
T ss_dssp             HHHHHHHHH-HHHHHHTTSHHHHBCHHHHHHHHHHHHH---TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-
T ss_pred             HHHHHHHHH-HHHHHHHhcccccccHHHHHHHHHHHHH---HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-
Confidence            555666665 44322    0     01     122222   13444443    433 4677777788888888876543 


Q ss_pred             HHHHHHhcCChHHHH-HhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          254 YRSSILKEGVMPGLL-QLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       254 ~~~~~~~~g~i~~L~-~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                        ..+.+.+.++.|+ ..+  .++..+..|+.+|..+...
T Consensus       241 --~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          241 --GYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             --HHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred             --HHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence              4577788888774 555  4788999999999887653

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=81.65  E-value=22  Score=29.60  Aligned_cols=141  Identities=13%  Similarity=0.028  Sum_probs=89.8

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-
Q 048113           84 PVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-  162 (339)
Q Consensus        84 ~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-  162 (339)
                      +..-.+.+++..++|..|+..|..+ .  .      ....++.+...+..+          .+-.+++.+..++..++. 
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D----------~~WrVre~lA~a~~~~~~~  134 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKD----------NNWRVQEVLAKAFDEFCKK  134 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGC----------SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCC----------CCccHHHHHHHHHHHHHHh
Confidence            3444555667788999999988776 2  1      122566666634332          789999999999999874 


Q ss_pred             -CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHH
Q 048113          163 -CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVA  241 (339)
Q Consensus       163 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~  241 (339)
                       .++.        .++.+.....+.  +..+++.|...+. --+..+..+   .+..-.++.|-.+..+++..++.....
T Consensus       135 ~~pe~--------~l~~~~~W~~d~--n~~VRR~Ase~~r-pW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan  200 (240)
T 3l9t_A          135 IEYKK--------ALPIIDEWLKSS--NLHTRRAATEGLR-IWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGN  200 (240)
T ss_dssp             HCTTT--------THHHHHHHHHCS--SHHHHHHHHHHTC-SGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred             cCHHH--------HHHHHHHHhcCC--CHHHHHHHHHhhH-HHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHH
Confidence             4441        566777777774  5777777766543 211111100   010113444444556678999999999


Q ss_pred             HHHHhhccCchhHHHH
Q 048113          242 ILLLICKSCRDKYRSS  257 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~  257 (339)
                      +|..++..+|+-.+..
T Consensus       201 ~LrD~SK~~Pd~V~~~  216 (240)
T 3l9t_A          201 ALRDISKKFPDLVKIE  216 (240)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHhhhCHHHHHHH
Confidence            9999999876644443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.001
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-05

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 8/198 (4%)

Query: 3   EMLMDNLLNGERETQIQAANELGKL---SRRQKHKLVERGIIAPLISMLCSQDYEAIEAA 59
              +  L + + + Q   A  +          K ++ + G I  L+ +L S +    +AA
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 60  LLSLLSLACGSERNKIRIVKSGIVPVLLEV-LQCQSTTLIELTVAAMLILSSCLENKLEI 118
             +L +L   S  NK+   +   +   + +  +  +  + +     +  LSS  E K E+
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 119 ASSGAIQRLVEIL----NGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSG 174
            +         ++         + + S   +  +   +A   L NLS+       + +  
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 175 VTYCLLQLIHSSEKSSGL 192
                L     +  ++  
Sbjct: 185 GLIDSLMAYVQNCVAASR 202

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 40  IIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIE 99
            I   +  L SQD +        +       E  K ++ + G +  L+++L+  +  + +
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 100 LTVAAMLILS-SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH 158
               A+  L      NKLE      I+  V +L      +           +      L 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAE----------IQKQLTGLLW 112

Query: 159 NLSTCHQLISPIVSSGVTYCLLQLIH-------------SSEKSSGLTEKAIALLENIVS 205
           NLS+  +L   +++  +     ++I                     +   A   L N+ S
Sbjct: 113 NLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL-S 171

Query: 206 SSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMP 265
           S++   Q +    G I +L+  ++      +    ++   +C      YR          
Sbjct: 172 SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231

Query: 266 GLLQLSVD 273
            L   + +
Sbjct: 232 QLEYNARN 239

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 25/245 (10%), Positives = 70/245 (28%), Gaps = 11/245 (4%)

Query: 8   NLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLA 67
           N +        +   E+    R+ ++                ++  + +       L   
Sbjct: 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269

Query: 68  CGSERNKIRIVKSGIVPVLLEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQR 126
             + +    +  S  +   L ++   +    +E    A+  L++             + +
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS-----GMSQ 324

Query: 127 LVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS- 185
           L+ +    L          +        + L N+S    L   + +         L    
Sbjct: 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384

Query: 186 --SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE-GSPQCKEHAVAI 242
             +  S  +   A   + N+++S     ++  +    +  ++       SP+  E A  +
Sbjct: 385 GNTSNSEDILSSACYTVRNLMASQPQLAKQYFS-SSMLNNIINLCRSSASPKAAEAARLL 443

Query: 243 LLLIC 247
           L  + 
Sbjct: 444 LSDMW 448

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 1/107 (0%)

Query: 27  LSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86
           L   Q    +    I  L  +L  +D   +  A + +  L+         +    +V  +
Sbjct: 5   LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64

Query: 87  LEVLQ-CQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILN 132
           +  +Q          T   +  LS   E  L I  SG I  LV++L 
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG 111

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 70  SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVE 129
                 +   S        V   +   ++E    A+ IL+  + N++ I     I   V+
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467

Query: 130 ILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKS 189
           +L                  +  A   L  L+   +    I + G T  L +L+HS  ++
Sbjct: 468 LLYSP-----------IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS--RN 514

Query: 190 SGLTEKAIALLENI 203
            G+   A A+L  +
Sbjct: 515 EGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 42  APLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELT 101
                +   +  E +E    +L  LA     N+I I     +P+ +++L      +  + 
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVA 480

Query: 102 VAAMLILSSCLENKLEIASSGAIQRLVEILN 132
              +  L+   E    I + GA   L E+L+
Sbjct: 481 AGVLCELAQDKEAAEAIEAEGATAPLTELLH 511

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 45/208 (21%), Positives = 72/208 (34%), Gaps = 16/208 (7%)

Query: 51  QDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQST-TLIELTVAAMLILS 109
              E    AL  L S    +E  +  +     +PV++++L   S   LI+ TV  +  L+
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384

Query: 110 SCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKI-----------DAIATLH 158
            C  N   +   GAI RLV++L     D          Q +                 LH
Sbjct: 385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 444

Query: 159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATC 218
            L+        I         +QL++S      +   A  +L  +    E A  E     
Sbjct: 445 ILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQDKEAA--EAIEAE 500

Query: 219 GAIRALVETIEEGSPQCKEHAVAILLLI 246
           GA   L E +   +     +A A+L  +
Sbjct: 501 GATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 24/281 (8%)

Query: 27  LSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVL 86
           LS     +    G++  L+ +L S D   +  A   L +L C + +NK+ + + G +  L
Sbjct: 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313

Query: 87  LEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRIS 146
           +  +            A   +      ++    +  A++       G        +    
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH----YGLPVVVKLLHPPSH 369

Query: 147 VQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAI--------- 197
                  +  + NL+ C    +P+   G    L+QL+  + + +                
Sbjct: 370 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429

Query: 198 ALLENIVSSSEDALQEIA---------ATCGAIRALVETIEEGSPQCKEHAVAILLLICK 248
             +E IV     AL  +A              I   V+ +       +  A  +L  + +
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489

Query: 249 SCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLL 289
               +   +I  EG    L +L           A  +L  +
Sbjct: 490 D--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 3   EMLMDNLLNGERETQIQAANELGKLSRRQKHK----LVERGIIAPLISMLCSQDYEAI-E 57
           E ++  + +   E+Q+QA     KL  R+K      ++  G+I   +S L   D   I  
Sbjct: 16  EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQF 75

Query: 58  AALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLE 117
            +  +L ++A G+      +V  G +P  + +L      + E  V A+  ++       +
Sbjct: 76  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135

Query: 118 I 118
           +
Sbjct: 136 L 136

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 11/221 (4%)

Query: 41  IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKI-RIVKSGIVPVLLEVLQCQSTTLIE 99
           +  ++  + S + E+   A  +   L    ++  I  I+++G++P  +  L     + I+
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 100 LTVAAML--ILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL 157
              A  L  I S   E    +   GAI   +           + +  IS QA        
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFIS-------LLASPHAHISEQAVWALGNIA 127

Query: 158 HNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT 217
            + S    L+    +      LL +   S  + G        L N+  +   A   + A 
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA-PPLDAV 186

Query: 218 CGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSI 258
              +  LV  +    P+    +   +  +     ++    +
Sbjct: 187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 227

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 34/204 (16%), Positives = 76/204 (37%), Gaps = 8/204 (3%)

Query: 4   MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSL 63
            L+           ++A   +   +  Q  K+++ G +A   S+L +      + A  ++
Sbjct: 237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 296

Query: 64  LSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAM--LILSSCLENKLEIASS 121
            ++  G +    ++V  G+VP L+ VL        +    A+        +E  + +   
Sbjct: 297 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 356

Query: 122 GAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQ 181
           G I+ L+ +L+      D    ++ + A  +       L    +L   I   G    +  
Sbjct: 357 GIIEPLMNLLS----AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 412

Query: 182 LIHSSEKSSGLTEKAIALLENIVS 205
           L     +S  + + ++ L+E   S
Sbjct: 413 LQRHENES--VYKASLNLIEKYFS 434

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 1   MEEMLMDNLLNGERETQIQAANELGKLSR----RQKHKLVERGIIAPLISMLCSQDYEAI 56
           +   L+  L   + +TQ +AA  +   +      Q   LV  GII PL+++L ++D + I
Sbjct: 315 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 374

Query: 57  EAALLSLLSLA------CGSERNKIRIVKSGIVPVLLEVLQCQSTTLIEL 100
           +  L ++ ++         +E+  I I + G +  +  + + ++ ++ + 
Sbjct: 375 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 424

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.86
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.3
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.21
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.05
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.04
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.97
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.89
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.84
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.83
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.82
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.7
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.55
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.37
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.37
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.33
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.32
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.23
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.98
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.39
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.79
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.34
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.6
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	94.16
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.07
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.89
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.94
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.24
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	87.91
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	87.48
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	87.16
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	82.01

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.7e-29  Score=234.30  Aligned_cols=328  Identities=16%  Similarity=0.221  Sum_probs=272.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHH
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRI   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i   77 (339)
                      |.++..|.|++++.+..|+.+++++...    ....+.+.|++|.|+++|++ ++++++..|+++|.+++.++++.+..+
T Consensus        16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i   95 (434)
T d1q1sc_          16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV   95 (434)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHh
Confidence            5678999999999999999999998764    35788999999999999965 578899999999999998778889999


Q ss_pred             hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCC----------------
Q 048113           78 VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDN----------------  140 (339)
Q Consensus        78 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~----------------  140 (339)
                      .+.|++|.|+.+|.++++++++.|+++|.|++.+. ..+..+.+.|+++.++.++..+......                
T Consensus        96 ~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  175 (434)
T d1q1sc_          96 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  175 (434)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             hhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999755 5578888999999999998775322110                


Q ss_pred             --------------------ccCCCCHHHHHHHHHHHHhhcCCCC-ChHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113          141 --------------------SYGRISVQAKIDAIATLHNLSTCHQ-LISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       141 --------------------~~~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                                          -..+.+++++..++++|.+++..+. ....+.+.|+++.|++++.++  +.+++..++.+
T Consensus       176 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~--~~~~~~~al~~  253 (434)
T d1q1sc_         176 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRA  253 (434)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHH
T ss_pred             cccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc--hhhhhhchhhh
Confidence                                0466789999999999999988654 455667789999999999875  57899999999


Q ss_pred             HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHH
Q 048113          200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAK  279 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  279 (339)
                      +.|.+..+++.+..+.+ .|+++.++.+++++++.+++.++++|.+++.... ..+..+.+.|++|.++.++.++++.++
T Consensus       254 l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         254 IGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhHHhhhhHHHHHHHh-ccccchHHHhhcccchhhhHHHHHHHhhhccccc-hhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99544556667777887 8999999999999999999999999999998653 467788899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Q 048113          280 NMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       280 ~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~  334 (339)
                      ..|++++.++...............+.++.++..+..+++++...+...+..+..
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999876542222223456677777776655556666667777766654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.2e-29  Score=236.16  Aligned_cols=310  Identities=16%  Similarity=0.210  Sum_probs=261.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh-cCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE-RGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|++++..++..|+.++.+++.+  .+..+.. .|+++.|+.+|++ +++++++.|+.+|.+|+. +++++..++
T Consensus        20 p~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~   98 (529)
T d1jdha_          20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIF   98 (529)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHH
Confidence            5789999999999999999999999975  6666665 6789999999965 578999999999999998 799999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|++|.|+++|.+++++++..|+++|.|++.+. ..+..+.+.|+++.|++++++           ++++++..++.+|
T Consensus        99 ~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L  167 (529)
T d1jdha_          99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAITTDCL  167 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-----------CCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-----------cChHHHHHHHHHH
Confidence            9999999999999999999999999999999654 457788899999999999998           7999999999999


Q ss_pred             HhhcCC-CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      .+++.. ++.+..+.+.|+++.|+.++..++ ...++..+..++. +++.+++++..+.+ .|+++.|+.++.++++.++
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~-~ls~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~  244 (529)
T d1jdha_         168 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLK-VLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHH
T ss_pred             HHHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHh-hhhccccccchhhh-hhhhhhHHHHhcccchhhh
Confidence            999874 566778888999999999998753 5788899999999 78999999999997 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-  315 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-  315 (339)
                      ..+++++.+++....    ......|+++.|++++.++++.++..|+++|.+|+..++. ........++++.++..+. 
T Consensus       245 ~~a~~~l~~ls~~~~----~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~Li~~l~~  319 (529)
T d1jdha_         245 QNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             HHHHHHHHHHHTTCT----TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH-HHHHHHHTTHHHHHHHHHHH
T ss_pred             hhhhhHHHhcccccc----chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH-HHHHHHHhhhHHHHHHHHHh
Confidence            999999999985432    2223357899999999999999999999999999875431 0122335677777777665 


Q ss_pred             -hcCcccchHHHHHHHHH
Q 048113          316 -AEGDTVAGTTLRLVEEM  332 (339)
Q Consensus       316 -~~~~~~~~~a~~~l~~~  332 (339)
                       .+.+++.+.|...|..+
T Consensus       320 ~~~~~~~~~~a~~aL~~l  337 (529)
T d1jdha_         320 AGDREDITEPAICALRHL  337 (529)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             hhcchhHHHHHHHHhhcc
Confidence             33355566666555443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1e-26  Score=220.16  Aligned_cols=316  Identities=16%  Similarity=0.194  Sum_probs=261.0

Q ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLN-GERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s-~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+.+|.+ .+++.+..|+++|.+++.+   ....+.+.|+++.++.+|.+++.+++..|+++|++++..++..+..+.
T Consensus       122 ~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~  201 (503)
T d1wa5b_         122 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL  201 (503)
T ss_dssp             HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            567888874 5788999999999999874   667788999999999999999999999999999999997889999999


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCcc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|+++.|+.++.+.++.++..++++|.|++.... ........++++.|+.++.+           .+++++..++++|
T Consensus       202 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~-----------~d~~~~~~~~~~l  270 (503)
T d1wa5b_         202 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-----------MDTETLVDACWAI  270 (503)
T ss_dssp             HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-----------CCHHHHHHHHHHH
T ss_pred             hhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcc-----------ccHHHHHHHHHHH
Confidence            99999999999999999999999999999997543 34444567899999999998           7999999999999


Q ss_pred             HhhcCCC-CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLSTCH-QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      .+++... +....+.+.|+++.++.++.++  +..+...++.+++|.+...+.....+.+ .|+++.|..+++++++.++
T Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~l~nl~~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~i~  347 (503)
T d1wa5b_         271 SYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIK  347 (503)
T ss_dssp             HHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred             HhhccCCchhhhhhhhhhhhhhhhhcccCC--chhhhhhHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHhcCCCHHHH
Confidence            9998754 5567788999999999999875  5788999999999544555555566665 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcc-hhh-hhhhHHHHHHHHHH
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGS-RSK-QLKNELVEQIMQEI  314 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~-~~~~~~~~~i~~~~  314 (339)
                      ..+++++.|++..++ .....+.+.|++|.++.++.++++.++..|+++|.++...+.... ... .+..+.+..++..+
T Consensus       348 ~~~~~~l~nl~~~~~-~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L  426 (503)
T d1wa5b_         348 KEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL  426 (503)
T ss_dssp             HHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHhhccH-HHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHh
Confidence            999999999998764 477888899999999999999999999999999999987543110 112 23456666666655


Q ss_pred             HhcCcccchHHHHHHHHHH
Q 048113          315 DAEGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       315 ~~~~~~~~~~a~~~l~~~v  333 (339)
                      .....++...+...+..+.
T Consensus       427 ~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         427 EIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            4444444445555555554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.7e-26  Score=213.89  Aligned_cols=314  Identities=16%  Similarity=0.222  Sum_probs=252.2

Q ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLN-GERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s-~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+++|.+ .++++|..|+++|.+++..   .+..+.+.|+++.++.+|+++++++++.|+++|.+++.+++..+..+.
T Consensus        59 ~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  138 (434)
T d1q1sc_          59 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVI  138 (434)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            578888864 5688999999999999864   788899999999999999999999999999999999987777788888


Q ss_pred             hcCChHHHHHhhc-----------------------------------------------CCChhHHHHHHHHHHHHhcC
Q 048113           79 KSGIVPVLLEVLQ-----------------------------------------------CQSTTLIELTVAAMLILSSC  111 (339)
Q Consensus        79 ~~g~i~~Lv~lL~-----------------------------------------------~~~~~~~~~a~~~L~nLs~~  111 (339)
                      +.|+++.++.++.                                               +++++++..+++++.+++..
T Consensus       139 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~  218 (434)
T d1q1sc_         139 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  218 (434)
T ss_dssp             HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh
Confidence            8888777766553                                               33356677888888888865


Q ss_pred             cc-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCC-CCChHHHHhcCcHHHHHHHhhccccC
Q 048113          112 LE-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTC-HQLISPIVSSGVTYCLLQLIHSSEKS  189 (339)
Q Consensus       112 ~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~  189 (339)
                      ++ ....+.+.|+++.|++++.+           .+..++..++.+|.+++.. ++.+..+.+.|+++.++.++.++  +
T Consensus       219 ~~~~~~~~~~~~~~~~Lv~ll~~-----------~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~  285 (434)
T d1q1sc_         219 PNERIEMVVKKGVVPQLVKLLGA-----------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--K  285 (434)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTC-----------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--S
T ss_pred             hhhhHHHHhhcccchhccccccc-----------chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc--c
Confidence            54 35566788999999999998           7999999999999999874 46678889999999999999875  5


Q ss_pred             chHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHH
Q 048113          190 SGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQ  269 (339)
Q Consensus       190 ~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~  269 (339)
                      .+++..++.+|+|.+...++.+..+.+ .|+++.+++++.++++.++..|++++.+++.....+....+.+.|++++|++
T Consensus       286 ~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~  364 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  364 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHhhhccccchhHHHHhh-hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence            789999999999544456666777776 8999999999999999999999999999998765556677889999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHHhccCCCcchh----hhhh-hHHHHHHHHHHH-hcCcccchHHHHHHHH
Q 048113          270 LSVDGTWRAKNMARDLLLLLRDCSSFGSRS----KQLK-NELVEQIMQEID-AEGDTVAGTTLRLVEE  331 (339)
Q Consensus       270 ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~----~~~~-~~~~~~i~~~~~-~~~~~~~~~a~~~l~~  331 (339)
                      ++.+.++.++..++++|.+|....+.....    ..+. .++++ .+..+. .+.++++..|..+++.
T Consensus       365 ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         365 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHH-HHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHH-HHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999998876532110011    1122 22333 345554 4557778888887764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-26  Score=217.74  Aligned_cols=314  Identities=15%  Similarity=0.154  Sum_probs=262.9

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCS-QDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      .++..+.+++++.+..|+..++++...    ..+.+++.|+++.|+.++++ .+++++..|+++|.+++.+++.....+.
T Consensus        80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~  159 (503)
T d1wa5b_          80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV  159 (503)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            467778899999999999999987643    56788999999999999985 4788999999999999997788888899


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcC-ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHH
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSC-LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATL  157 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L  157 (339)
                      +.|+++.++.+|.+++.+++..|+++|+|++.. +.++..+.+.|+++.|+.++.+           .+..++..++++|
T Consensus       160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-----------~~~~~~~~~~~~l  228 (503)
T d1wa5b_         160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-----------NKPSLIRTATWTL  228 (503)
T ss_dssp             HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-----------CCHHHHHHHHHHH
T ss_pred             hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-----------CCHHHHHHHHHHH
Confidence            999999999999999999999999999999975 4668889999999999999988           7889999999999


Q ss_pred             HhhcCCCCC-hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHH
Q 048113          158 HNLSTCHQL-ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCK  236 (339)
Q Consensus       158 ~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  236 (339)
                      +|++..... .......|+++.|+.++.+.  +.+++..++++|.+.....++....+.+ .|+++.++.++.++++.++
T Consensus       229 ~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~  305 (503)
T d1wa5b_         229 SNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQ  305 (503)
T ss_dssp             HHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHH
T ss_pred             HHHhcCCccchHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhh
Confidence            999986543 44445668999999999875  5788999999999444455666677776 8999999999999999999


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHh
Q 048113          237 EHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDA  316 (339)
Q Consensus       237 ~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  316 (339)
                      ..++.++.+++.... .....+.+.|+++.|..++.++++.++..++++|.+++.+++.. .......+.+..++..+..
T Consensus       306 ~~al~~l~nl~~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~-~~~i~~~~~l~~li~~l~~  383 (503)
T d1wa5b_         306 TPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ-IQAVIDANLIPPLVKLLEV  383 (503)
T ss_dssp             HHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH-HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHH-HHHHHHccccchhHHhccc
Confidence            999999999998754 36677888999999999999999999999999999998765421 1223346677777777754


Q ss_pred             cCcccchHHHHHHHHHH
Q 048113          317 EGDTVAGTTLRLVEEMI  333 (339)
Q Consensus       317 ~~~~~~~~a~~~l~~~v  333 (339)
                      ...+++..|-..+.++.
T Consensus       384 ~~~~v~~~a~~~l~nl~  400 (503)
T d1wa5b_         384 AEYKTKKEACWAISNAS  400 (503)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHH
Confidence            55566666766666554

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.4e-27  Score=223.41  Aligned_cols=275  Identities=20%  Similarity=0.186  Sum_probs=241.4

Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLL-NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~-s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.|+..|. +++++.+..|+.+|.+++.+  ++..+.+.|+++.|+.+|++++++++..|+++|.+++.+++..+..+.+
T Consensus        62 ~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~  141 (529)
T d1jdha_          62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL  141 (529)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHh
Confidence            56777886 57889999999999999976  8899999999999999999999999999999999999987888889999


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      .|++|.|+.+|++++++++..++++|.+++..+ ..+..+.+.|+++.|+.++..+          ....++..++.++.
T Consensus       142 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----------~~~~~~~~~~~~l~  211 (529)
T d1jdha_         142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------TYEKLLWTTSRVLK  211 (529)
T ss_dssp             HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----------CCHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhh----------hhHHHHHHHHHHHh
Confidence            999999999999999999999999999999755 4577788999999999999774          67889999999999


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEH  238 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  238 (339)
                      +++.+++++..+++.|+++.|+.++.++  +..+...+++++. +++......  ... .|+++.|+++++++++.+++.
T Consensus       212 ~ls~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~l~-~ls~~~~~~--~~~-~~~i~~Lv~ll~~~~~~~~~~  285 (529)
T d1jdha_         212 VLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLR-NLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTC  285 (529)
T ss_dssp             HHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHH-HHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhccccccchhhhhhhhhhHHHHhccc--chhhhhhhhhHHH-hccccccch--hhh-hhcchhhhhhcccccHHHHHH
Confidence            9999999999999999999999999875  5788999999999 666543322  222 478999999999999999999


Q ss_pred             HHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh--cCCHHHHHHHHHHHHHHhccCC
Q 048113          239 AVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV--DGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       239 a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      ++++|++++..++ ..+..+.+.|+++.|+.++.  +.++.+++.|+.+|++++....
T Consensus       286 a~~~L~~l~~~~~-~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         286 AAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             HHHHHHHHTTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HHHHHHhhccchh-HHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            9999999997654 47788889999999999874  4568889999999999987543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-25  Score=204.76  Aligned_cols=287  Identities=17%  Similarity=0.124  Sum_probs=235.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      +.||++|.+++++++..|+++|++++.+   +|..+.+.|+||.|+++|++++++++..|+++|.+|+.++++++..+.+
T Consensus         5 p~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~   84 (457)
T d1xm9a1           5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6899999999999999999999999964   9999999999999999999999999999999999999878999999999


Q ss_pred             cCChHHHHHhhcC-CChhHHHHHHHHHHHHhcCccchHH-----------------------------------------
Q 048113           80 SGIVPVLLEVLQC-QSTTLIELTVAAMLILSSCLENKLE-----------------------------------------  117 (339)
Q Consensus        80 ~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~-----------------------------------------  117 (339)
                      .|+++.|+.++.+ .+++++..++++|.+++..+..+..                                         
T Consensus        85 ~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~  164 (457)
T d1xm9a1          85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT  164 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHH
T ss_pred             CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHH
Confidence            9999999998865 4788999999999999875543211                                         


Q ss_pred             ----------------HHhcchHHHHHHHhcCCCCCC---C---------------------------------------
Q 048113          118 ----------------IASSGAIQRLVEILNGDLADD---D---------------------------------------  139 (339)
Q Consensus       118 ----------------i~~~g~i~~Lv~ll~~~~~~~---~---------------------------------------  139 (339)
                                      +...|+++.++.++++.....   .                                       
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (457)
T d1xm9a1         165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK  244 (457)
T ss_dssp             HHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------
T ss_pred             HHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHH
Confidence                            112466788877765320000   0                                       


Q ss_pred             ---------------------C------c-------------------cCCCCHHHHHHHHHHHHhhcCCCCC------h
Q 048113          140 ---------------------N------S-------------------YGRISVQAKIDAIATLHNLSTCHQL------I  167 (339)
Q Consensus       140 ---------------------~------~-------------------~~~~~~~~~~~a~~~L~nLs~~~~~------~  167 (339)
                                           .      .                   ..+.++.....+..++.+++.....      +
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  324 (457)
T d1xm9a1         245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ  324 (457)
T ss_dssp             ---------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH
T ss_pred             HhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHH
Confidence                                 0      0                   1345677888899999999875432      3


Q ss_pred             HHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcC------ChHHHHHHHH
Q 048113          168 SPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEG------SPQCKEHAVA  241 (339)
Q Consensus       168 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~a~~  241 (339)
                      ..+.+.|+++.|++++.+.  +.+++..++.+++ +++.+++++..+.+  ++++.++.+|...      ++.++..+++
T Consensus       325 ~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~l~-~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         325 LIGLKEKGLPQIARLLQSG--NSDVVRSGASLLS-NMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHH-HHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHhhhcCc--cHHHHHHHHHHHH-HHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence            4455679999999999875  5789999999999 78999999888764  6899999998642      3568899999


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHHHHHHhccCCC
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDLLLLLRDCSSF  295 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~  295 (339)
                      +|.+++..++. .++.+.+.|+++.|+.++++. ++.+++.|+.+|.+|..+.+.
T Consensus       400 ~L~~l~~~~~~-~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         400 TVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            99999987654 788999999999999998764 688999999999999877653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.5e-22  Score=181.94  Aligned_cols=262  Identities=17%  Similarity=0.161  Sum_probs=204.9

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhc-CccchHH
Q 048113           39 GIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSS-CLENKLE  117 (339)
Q Consensus        39 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~  117 (339)
                      +.||.|+++|++++++++..|+++|.+||.+++++|..+.+.|+||.|+++|.+++++++..|+++|.||+. +++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            478999999999999999999999999999889999999999999999999999999999999999999995 5567899


Q ss_pred             HHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhc------------
Q 048113          118 IASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHS------------  185 (339)
Q Consensus       118 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~------------  185 (339)
                      +.+.|+++.|++++.+.          .++.++..|+++|++++..+..+......|+.+.+..++..            
T Consensus        82 i~~~g~v~~li~~l~~~----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  151 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRT----------GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMS  151 (457)
T ss_dssp             HHHTTCHHHHHHHHTTC----------CCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-------
T ss_pred             HHHCCChHHHHHHHhcc----------CcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhh
Confidence            99999999999999774          68899999999999999988887777665544443333321            


Q ss_pred             -cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhc----------------------------------
Q 048113          186 -SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEE----------------------------------  230 (339)
Q Consensus       186 -~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~----------------------------------  230 (339)
                       ...+..++..++.++. .++.+++++.......|+++.++.++++                                  
T Consensus       152 ~~~~~~~v~~~a~~~l~-~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  230 (457)
T d1xm9a1         152 REVVDPEVFFNATGCLR-NLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY  230 (457)
T ss_dssp             --CCCHHHHHHHHHHHH-HHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred             cccccHHHHHHHHHHHH-HHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence             1124677888888888 6787777777666545666666665532                                  


Q ss_pred             -----------------------------------------------------------------CChHHHHHHHHHHHH
Q 048113          231 -----------------------------------------------------------------GSPQCKEHAVAILLL  245 (339)
Q Consensus       231 -----------------------------------------------------------------~~~~~~~~a~~~L~~  245 (339)
                                                                                       .++..++.+.+++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~  310 (457)
T d1xm9a1         231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN  310 (457)
T ss_dssp             HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence                                                                             122334455666666


Q ss_pred             hhccCch----hHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHH
Q 048113          246 ICKSCRD----KYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEI  314 (339)
Q Consensus       246 l~~~~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~  314 (339)
                      ++.....    ..+..+.+.|++|.|++++.++++.++..+++++.+|+.+..   .++.+...+++.++..+
T Consensus       311 l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~---~~~~i~~~~i~~li~~L  380 (457)
T d1xm9a1         311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL---LHRVMGNQVFPEVTRLL  380 (457)
T ss_dssp             HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG---GHHHHHHHTHHHHHHTT
T ss_pred             HhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh---HHHHHHHhhHHHHHHHH
Confidence            6654321    123445568999999999999999999999999999998765   45556666666666554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.3e-21  Score=164.31  Aligned_cols=193  Identities=15%  Similarity=0.130  Sum_probs=170.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHH
Q 048113           11 NGERETQIQAANELGKLSRR--QKHKLVERGIIAPLIS-MLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLL   87 (339)
Q Consensus        11 s~~~~~~~~a~~~L~~l~~~--~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv   87 (339)
                      +.+.+.+..|+..|.+++.+  ++..+...|+++.++. ++++++++++..|+++|++++.+++..+..+.+.|++|.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            45678899999999999976  8889999999999986 78899999999999999999998888999999999999999


Q ss_pred             HhhcC-CChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CC
Q 048113           88 EVLQC-QSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CH  164 (339)
Q Consensus        88 ~lL~~-~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~  164 (339)
                      +++.+ +++.++..++++|.+++.+. +++..+...|+++.|++++++           .+..++..++.+|++++. ++
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~-----------~~~~~~~~a~~~L~~l~~~~~  176 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----------QVQKLKVKSAFLLQNLLVGHP  176 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----------SCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc-----------CchHHHHHHHHHHHHHHhccH
Confidence            99975 57889999999999999655 567888899999999999999           899999999999999986 67


Q ss_pred             CChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          165 QLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       165 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                      +.+..+.+.|+++.|+.++.++  +.++++.|+.+|.++...++..+..+..
T Consensus       177 ~~~~~~~~~~~v~~L~~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         177 EHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             GGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHHhhhHHHHHHHHcCC--CHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8899999999999999999875  5789999999999555556666666553

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.6e-21  Score=165.74  Aligned_cols=202  Identities=15%  Similarity=0.150  Sum_probs=174.5

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHH-hhcCCChhHHHHHHHHHHHHhcCc-cchHHHHh
Q 048113           43 PLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLE-VLQCQSTTLIELTVAAMLILSSCL-ENKLEIAS  120 (339)
Q Consensus        43 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~  120 (339)
                      .......+.+.+.+..|+.+|.+|+. +.+++..+...|+++.++. ++++++++++..|+.+|.+++.++ .++..+.+
T Consensus        21 ~~~~~~~~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~   99 (264)
T d1xqra1          21 TAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG   99 (264)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHhhcCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445577899999999999998 7899999999999999886 788889999999999999999754 56888889


Q ss_pred             cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHH
Q 048113          121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIAL  199 (339)
Q Consensus       121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  199 (339)
                      .|++|.|++++.+.          .++.++..++.+|.+++. ++.++..+.+.|+++.|++++.+.  +..++..++.+
T Consensus       100 ~~~i~~Lv~lL~~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~  167 (264)
T d1xqra1         100 LGALRKLLRLLDRD----------ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFL  167 (264)
T ss_dssp             TTHHHHHHHHHHHC----------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHH
T ss_pred             cCchHHHHHHhhcC----------CCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHH
Confidence            99999999999764          688999999999999997 456778889999999999999885  57899999999


Q ss_pred             HHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHH
Q 048113          200 LENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSIL  259 (339)
Q Consensus       200 L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  259 (339)
                      |.|.+...++.+..+.+ .|+++.|+.+++++++.+++.++++|.+|+..++. .+..+.
T Consensus       168 L~~l~~~~~~~~~~~~~-~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~-~~~~~~  225 (264)
T d1xqra1         168 LQNLLVGHPEHKGTLCS-MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECR  225 (264)
T ss_dssp             HHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred             HHHHHhccHHHHHHHHH-hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence            99666678888989987 89999999999999999999999999999987655 344444

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.9e-11  Score=111.09  Aligned_cols=303  Identities=11%  Similarity=0.169  Sum_probs=204.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.+..++.+.++.+|..|+..+..++............++.+..+++++++.+|..|+.++..++...+..   -...-.
T Consensus       167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i  243 (588)
T d1b3ua_         167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALV  243 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHT
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH---HHHHHH
Confidence            35666778899999999999999998861122234566777888889999999999999999887632221   122336


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST  162 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~  162 (339)
                      +|.+..++.+++..+|..++.+|.++...-.  ..+.....++.+..++.+           .+.+++..|+.++..++.
T Consensus       244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d-----------~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKD-----------CEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTC-----------SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhc-----------cchHHHHHHHHHHHHHHH
Confidence            7888889888899999999999999875222  123345678999999988           799999999999999876


Q ss_pred             C--CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          163 C--HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       163 ~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      .  ........-...++.+...+.+.  +..++..+..++. .++.. -+.....  ...++.+..++++.++.++..+.
T Consensus       311 ~l~~~~~~~~~~~~i~~~l~~~~~d~--~~~vr~~~~~~l~-~~~~~-~~~~~~~--~~l~p~l~~~l~d~~~~v~~~~~  384 (588)
T d1b3ua_         311 NLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIM-GLSPI-LGKDNTI--EHLLPLFLAQLKDECPEVRLNII  384 (588)
T ss_dssp             TSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGG-GGHHH-HCHHHHH--HHTHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhhhhhhhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHh-hhhhc-cchhHHH--HHHHHHHHHHHHhhhhhhhhHHH
Confidence            3  33333333346777788887764  4667777666666 33311 1122222  24678888899988888998888


Q ss_pred             HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcC-c
Q 048113          241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEG-D  319 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~  319 (339)
                      .++..+....+.   .. .....+|.+..++.+.+++++..+..++..++..-.    .+... +.+..++.....|. .
T Consensus       385 ~~l~~~~~~~~~---~~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~----~~~~~-~~l~~~l~~~l~D~~~  455 (588)
T d1b3ua_         385 SNLDCVNEVIGI---RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG----VEFFD-EKLNSLCMAWLVDHVY  455 (588)
T ss_dssp             TTCHHHHHHSCH---HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC----GGGCC-HHHHHHHHHGGGCSSH
T ss_pred             HHHHHHHhhcch---hh-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC----hHhHH-HHHHHHHHhhccCCch
Confidence            877776643222   11 123467888888889999999999888888875321    11122 22333322222333 5


Q ss_pred             ccchHHHHHHHHHHHHh
Q 048113          320 TVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       320 ~~~~~a~~~l~~~v~~~  336 (339)
                      .++..|.+.|..++..+
T Consensus       456 ~VR~~A~~~L~~l~~~~  472 (588)
T d1b3ua_         456 AIREAATSNLKKLVEKF  472 (588)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence            55666777776666543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.7e-10  Score=107.04  Aligned_cols=293  Identities=10%  Similarity=0.110  Sum_probs=175.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      .+...+.++++++|..|+..+..++..    .+....-...++.+...+++.++.++..++.++..++...+  .. -..
T Consensus       285 ~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~--~~-~~~  361 (588)
T d1b3ua_         285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--KD-NTI  361 (588)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HH-HHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc--hh-HHH
Confidence            344444555555555555555555443    22222223444555555555555555555555544443100  00 111


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           80 SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        80 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      ...+|.+...+.+++++++..+...+..+...-....  .....++.+..++.+           .++.++..++.++..
T Consensus       362 ~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d-----------~~~~~r~~~~~~l~~  428 (588)
T d1b3ua_         362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAED-----------AKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTC-----------SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhh--hhhHHHHHHHHHHhc-----------ccHHHHHHHHHHHHH
Confidence            2345666666766677777766666555543111111  123456777777777           789999999999988


Q ss_pred             hcCC--CCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHH
Q 048113          160 LSTC--HQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKE  237 (339)
Q Consensus       160 Ls~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  237 (339)
                      ++..  .+.    ......+.+..++.+.  ...++..|+.+|+ .+.... +.....  ...++.+.+++.+++...+.
T Consensus       429 l~~~~~~~~----~~~~l~~~l~~~l~D~--~~~VR~~A~~~L~-~l~~~~-~~~~~~--~~i~~~l~~~~~~~~~~~R~  498 (588)
T d1b3ua_         429 LAGQLGVEF----FDEKLNSLCMAWLVDH--VYAIREAATSNLK-KLVEKF-GKEWAH--ATIIPKVLAMSGDPNYLHRM  498 (588)
T ss_dssp             HHHHHCGGG----CCHHHHHHHHHGGGCS--SHHHHHHHHHHHH-HHHHHH-CHHHHH--HHTHHHHHHTTTCSCHHHHH
T ss_pred             HHHHcChHh----HHHHHHHHHHhhccCC--chhHHHHHHHHHH-HHHHHh-CcHHHH--HHHHHHHHHHhcCCCHHHHH
Confidence            8642  111    1122455667777664  4788889999988 443221 111122  34778888888888888899


Q ss_pred             HHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhc
Q 048113          238 HAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAE  317 (339)
Q Consensus       238 ~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  317 (339)
                      .++.++..+....+    ........+|.|.+++.+..+.+|..|+.+|..+...-.   . + .-...+..+++.+.-|
T Consensus       499 ~~~~~l~~l~~~~~----~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~---~-~-~~~~~i~~~l~~L~~D  569 (588)
T d1b3ua_         499 TTLFCINVLSEVCG----QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD---N-S-TLQSEVKPILEKLTQD  569 (588)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC---H-H-HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcC----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---c-H-hHHHHHHHHHHHHcCC
Confidence            99999888875422    223445689999999999999999999999999876543   1 1 2233445555555444


Q ss_pred             C-cccchHHHHHHHH
Q 048113          318 G-DTVAGTTLRLVEE  331 (339)
Q Consensus       318 ~-~~~~~~a~~~l~~  331 (339)
                      . .+++.-|...+..
T Consensus       570 ~d~dVr~~A~~al~~  584 (588)
T d1b3ua_         570 QDVDVKYFAQEALTV  584 (588)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            3 5678877777654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.2e-08  Score=82.42  Aligned_cols=224  Identities=11%  Similarity=0.057  Sum_probs=155.5

Q ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            2 EEMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         2 ~~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      ++.|+..|.++++.+|..|+.+|..+.        ...+++.|+.++++.++.++..|+.+|..+... ......     
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~-----   86 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDN-----   86 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHH-----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccc-----
Confidence            467899999999999999999997653        244679999999999999999999999998763 222222     


Q ss_pred             ChHHHHH-hhcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhh
Q 048113           82 IVPVLLE-VLQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNL  160 (339)
Q Consensus        82 ~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nL  160 (339)
                      .++.+.. +++++++.++..++.+|.++.......    ....++.+...+.+           .++.++..++.++...
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d-----------~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFD-----------KSTNVRRATAFAISVI  151 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcC-----------cchHHHHHHHHHHhhc
Confidence            1333444 566778999999999999887544321    12357777777777           7888998888887764


Q ss_pred             cCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHH
Q 048113          161 STCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAV  240 (339)
Q Consensus       161 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~  240 (339)
                      .          +...++.+..++...  +......+..++. ......         ...++.++..+.+.+..++..+.
T Consensus       152 ~----------~~~~~~~l~~l~~~~--~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  209 (276)
T d1oyza_         152 N----------DKATIPLLINLLKDP--NGDVRNWAAFAIN-INKYDN---------SDIRDCFVEMLQDKNEEVRIEAI  209 (276)
T ss_dssp             -------------CCHHHHHHHHTCS--SHHHHHHHHHHHH-HHTCCC---------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             c----------hHHHHHHHHHhcccc--cchhhhhHHHHHH-hhhccc---------cccchhhhhhhhhhhhhhhhhhc
Confidence            3          234567777777664  3556666666666 332221         12445567777777888888877


Q ss_pred             HHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHh
Q 048113          241 AILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLR  290 (339)
Q Consensus       241 ~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~  290 (339)
                      .++..+..            ..++|.|++.+.+.  .++..|+.+|..+.
T Consensus       210 ~al~~~~~------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig  245 (276)
T d1oyza_         210 IGLSYRKD------------KRVLSVLCDELKKN--TVYDDIIEAAGELG  245 (276)
T ss_dssp             HHHHHTTC------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHC
T ss_pred             cccchhhh------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcC
Confidence            77766532            12577787777643  46777888877663

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.6e-08  Score=100.40  Aligned_cols=273  Identities=12%  Similarity=0.058  Sum_probs=162.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      .+...+.+++|..|..|+.+++.++.+....+..  ..+++.++..++++++.+|..|+++|+.++.........-.-..
T Consensus       399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~  478 (888)
T d1qbkb_         399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP  478 (888)
T ss_dssp             HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTT
T ss_pred             HHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            4456677899999999999999888652222222  34678888899999999999999999998863211111112346


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhcC--ccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSSC--LENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .++.++..+.++++.++..|+++|.++...  +...+.+  ...++.++..+..           .....+..+..++..
T Consensus       479 ~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~-----------~~~~~~~~~~~al~~  545 (888)
T d1qbkb_         479 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSK-----------YQHKNLLILYDAIGT  545 (888)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTT-----------CCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhh-----------hhHHHHHHHHHHHHH
Confidence            788899999999999999999999999742  2222221  3467778888877           455666666666666


Q ss_pred             hcC---CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHh--------
Q 048113          160 LST---CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETI--------  228 (339)
Q Consensus       160 Ls~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL--------  228 (339)
                      ++.   ..-....+.+ ..++.+.........+.......+.++................  ..++.+++++        
T Consensus       546 l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~  622 (888)
T d1qbkb_         546 LADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE--PVYQRCVNLVQKTLAQAM  622 (888)
T ss_dssp             HHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHH--HHHHHHHHHHHHHHHHHH
Confidence            543   2222222222 2445555554432222333334444444211111111111110  0111222211        


Q ss_pred             ----h-----cCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhcc
Q 048113          229 ----E-----EGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       229 ----~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~  292 (339)
                          .     .........+..++..+...-+....+.+.....++.+...+.+.++.++..|..++..++..
T Consensus       623 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~  695 (888)
T d1qbkb_         623 LNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA  695 (888)
T ss_dssp             HHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence                1     123445556666666665433332334444456788888889999999999999988777654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=2.4e-07  Score=83.30  Aligned_cols=275  Identities=13%  Similarity=0.081  Sum_probs=184.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHH--HHHHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhh
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRR--QKHKLVE--RGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVK   79 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~--~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~   79 (339)
                      .+...|.++++.....+...+..++..  ......+  ......+-.+..+++.+.+..|++++..+.. .++.|..+..
T Consensus       126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~  204 (477)
T d1ho8a_         126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWL  204 (477)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHT
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHH
Confidence            345556666777777777777777653  1111111  1122333344466788899999999999999 6889988865


Q ss_pred             c--CChHHHHHhhcC-----------------CChhHHHHHHHHHHHHhcCccchHHHHhc--chHHHHHHHhcCCCCCC
Q 048113           80 S--GIVPVLLEVLQC-----------------QSTTLIELTVAAMLILSSCLENKLEIASS--GAIQRLVEILNGDLADD  138 (339)
Q Consensus        80 ~--g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~  138 (339)
                      .  ..++.|+.+|..                 .+.+++-+++.++|-|+.+++....+.+.  +.|+.|+.+++..    
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s----  280 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT----  280 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC----
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhh----
Confidence            3  457777777643                 12467889999999999887776666655  4699999999774    


Q ss_pred             CCccCCCCHHHHHHHHHHHHhhcCCCC--C----hHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHH----------
Q 048113          139 DNSYGRISVQAKIDAIATLHNLSTCHQ--L----ISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLEN----------  202 (339)
Q Consensus       139 ~~~~~~~~~~~~~~a~~~L~nLs~~~~--~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n----------  202 (339)
                            ...++..-++.+|.|+...+.  +    ...++..++.+.+-.+......++++.+. +..|..          
T Consensus       281 ------~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lT  353 (477)
T d1ho8a_         281 ------IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQD-ISNLKEILENEYQELT  353 (477)
T ss_dssp             ------CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCC
T ss_pred             ------hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcC
Confidence                  688999999999999986432  2    23455666665554444443334554432 222211          


Q ss_pred             ------------hhcCCHhhh-HHHH--------h-hCCcHHHHHHHhhc----------CChHHHHHHHHHHHHhhccC
Q 048113          203 ------------IVSSSEDAL-QEIA--------A-TCGAIRALVETIEE----------GSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       203 ------------~l~~~~~~~-~~i~--------~-~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~  250 (339)
                                  .|...|..+ +.+=        + ....+..|+++|++          .++.+..-||.=+..++...
T Consensus       354 sfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~  433 (477)
T d1ho8a_         354 SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL  433 (477)
T ss_dssp             HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHC
Confidence                        222333333 1121        1 12347899999973          24556667777788899887


Q ss_pred             chhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          251 RDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       251 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      |. +|..+.+.|+=..+++++.+.++.++..|..+++-+-.
T Consensus       434 P~-gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         434 PE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             TT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            65 78888889998999999999999999999999977644

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.8e-07  Score=92.64  Aligned_cols=321  Identities=12%  Similarity=0.081  Sum_probs=184.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHh
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIV   78 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~   78 (339)
                      +.|+..+.+.++.+|..|+++|++++..    .... .-..+++.++..+.++++.++..|+++|.+++......-....
T Consensus       439 ~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~  517 (888)
T d1qbkb_         439 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL  517 (888)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            4577888899999999999999999875    1122 2356888889988899999999999999999863221111111


Q ss_pred             hcCChHHHHHhhcCCChhHHHHHHHHHHHHhc---CccchHHHHhcchHHHHHHHhcCCCCCCCC---------------
Q 048113           79 KSGIVPVLLEVLQCQSTTLIELTVAAMLILSS---CLENKLEIASSGAIQRLVEILNGDLADDDN---------------  140 (339)
Q Consensus        79 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~---~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~---------------  140 (339)
                       ...++.++..+.......+..+..++..++.   ..-.+..+. ...++.+...+.....++..               
T Consensus       518 -~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~  595 (888)
T d1qbkb_         518 -AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL  595 (888)
T ss_dssp             -HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Confidence             2356677777777665555555555554442   111111110 01122222221110000000               


Q ss_pred             ----------------------------------ccCCCCHHHHHHHHHHHHhhcC-CCCChHH-HHhcCcHHHHHHHhh
Q 048113          141 ----------------------------------SYGRISVQAKIDAIATLHNLST-CHQLISP-IVSSGVTYCLLQLIH  184 (339)
Q Consensus       141 ----------------------------------~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~-i~~~g~i~~Lv~ll~  184 (339)
                                                        .....+.+....++.++..+.. ....... +.....++.+...++
T Consensus       596 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~  675 (888)
T d1qbkb_         596 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ  675 (888)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC
Confidence                                              0011233444455555555543 2222223 333356667777777


Q ss_pred             ccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCCh
Q 048113          185 SSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVM  264 (339)
Q Consensus       185 ~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i  264 (339)
                      +.  +..++..|..+++......+..-....+  .+++.+++.|++....++.++++++..++...+...+..+  ..++
T Consensus       676 ~~--~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~il  749 (888)
T d1qbkb_         676 DK--MPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVL  749 (888)
T ss_dssp             CS--SHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HHHH
T ss_pred             CC--ChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHH
Confidence            64  5788888888887333333333333332  3667777777777888999999999999876544333221  2478


Q ss_pred             HHHHHhhhcC--CHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHH-hcCcccchHHHHHHHHHHH
Q 048113          265 PGLLQLSVDG--TWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEID-AEGDTVAGTTLRLVEEMIA  334 (339)
Q Consensus       265 ~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~a~~~l~~~v~  334 (339)
                      +.|+++++++  ...++++++.++..|....+.  .-...-...+......+. ++.++-+..|-+.+-.+|+
T Consensus       750 ~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~--~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~  820 (888)
T d1qbkb_         750 HQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ--EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS  820 (888)
T ss_dssp             HHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH--HHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH--HHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence            8888888764  355889999999877664321  000011233334444443 3344445667777777765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=6e-07  Score=75.59  Aligned_cols=200  Identities=10%  Similarity=0.029  Sum_probs=145.3

Q ss_pred             hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchH
Q 048113           37 ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKL  116 (339)
Q Consensus        37 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~  116 (339)
                      +......|+++|+++++.+|..|+.+|..+..           ..+++.|+.+++++++.++..|+.+|..+........
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence            45667789999999999999999999987754           1357999999999999999999999999876554433


Q ss_pred             HHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHH
Q 048113          117 EIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKA  196 (339)
Q Consensus       117 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  196 (339)
                      .     .++.+...+.++          .++.++..++.+|.+++.......    ...++.+...+.+.  +..++..+
T Consensus        86 ~-----~~~~l~~~~l~d----------~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~--~~~vr~~a  144 (276)
T d1oyza_          86 N-----VFNILNNMALND----------KSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDK--STNVRRAT  144 (276)
T ss_dssp             H-----HHHHHHHHHHHC----------SCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCS--CHHHHHHH
T ss_pred             c-----hHHHHHHHHhcC----------CChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCc--chHHHHHH
Confidence            2     244555544332          799999999999999876432211    13456677777663  46777777


Q ss_pred             HHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCH
Q 048113          197 IALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTW  276 (339)
Q Consensus       197 ~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  276 (339)
                      +.+++ ..          .. ...++.+..++.+.+...+..+..++..+......          ..+.+...+.+.+.
T Consensus       145 ~~~l~-~~----------~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  202 (276)
T d1oyza_         145 AFAIS-VI----------ND-KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD----------IRDCFVEMLQDKNE  202 (276)
T ss_dssp             HHHHH-TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH----------HHHHHHHHTTCSCH
T ss_pred             HHHHh-hc----------ch-HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc----------cchhhhhhhhhhhh
Confidence            77777 22          12 56788899999888888888888887777654321          35556777788888


Q ss_pred             HHHHHHHHHHHHHh
Q 048113          277 RAKNMARDLLLLLR  290 (339)
Q Consensus       277 ~~~~~A~~~L~~l~  290 (339)
                      .++..+..++..+.
T Consensus       203 ~~~~~~~~al~~~~  216 (276)
T d1oyza_         203 EVRIEAIIGLSYRK  216 (276)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             hhhhhhccccchhh
Confidence            88888877776653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.8e-06  Score=76.16  Aligned_cols=292  Identities=14%  Similarity=0.131  Sum_probs=176.7

Q ss_pred             HHHHHHcC--CCHHHHHHHHHHHHHHHHH-HHHHH--HhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhh-
Q 048113            4 MLMDNLLN--GERETQIQAANELGKLSRR-QKHKL--VERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKI-   75 (339)
Q Consensus         4 ~Lv~~L~s--~~~~~~~~a~~~L~~l~~~-~~~~i--~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~-   75 (339)
                      .++..+.+  .++..+..++.++..+... ....+  .....++.++..+.++  +.+++..|+.++..+....+.... 
T Consensus       131 ~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  210 (458)
T d1ibrb_         131 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK  210 (458)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            45566654  4567778888888888765 11111  1133567777777653  678999999999999874333221 


Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDA  153 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a  153 (339)
                      ........+.+...+.+++++++..++.++..+......  ...+ .....+.+...+.+           .+..++..|
T Consensus       211 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~-----------~~~~~~~~a  278 (458)
T d1ibrb_         211 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS-----------DIDEVALQG  278 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC-----------SSHHHHHHH
T ss_pred             HHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcc-----------ccHHHHHHH
Confidence            222234566777788888999999999999998753321  2211 22233444555556           688888888


Q ss_pred             HHHHHhhcCCC-----------------CCh----HHHHhcCcHHHHHHHhhcc-----ccCchHHHHHHHHHHHhhcCC
Q 048113          154 IATLHNLSTCH-----------------QLI----SPIVSSGVTYCLLQLIHSS-----EKSSGLTEKAIALLENIVSSS  207 (339)
Q Consensus       154 ~~~L~nLs~~~-----------------~~~----~~i~~~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~n~l~~~  207 (339)
                      +..+..++...                 ...    ....-...++.+...+.+.     +....++..+..++. .++..
T Consensus       279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~-~l~~~  357 (458)
T d1ibrb_         279 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM-LLATC  357 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHH-HHHHh
Confidence            88887775211                 000    0001112334444444321     112345666666666 34321


Q ss_pred             HhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 048113          208 EDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLL  287 (339)
Q Consensus       208 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~  287 (339)
                      ...  .+..  ..++.+.+.+++++...++.|+.+|..++.....+.... .-...+|.++..+++.++.+|..|+++|.
T Consensus       358 ~~~--~~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~  432 (458)
T d1ibrb_         358 CED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVG  432 (458)
T ss_dssp             TTT--THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             ccH--hhhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            111  1221  345666777888889999999999999986432211111 12457899999999999999999999998


Q ss_pred             HHhccCCCcchhhhhhhHHHHHHHHHHHhcC
Q 048113          288 LLRDCSSFGSRSKQLKNELVEQIMQEIDAEG  318 (339)
Q Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  318 (339)
                      .++..-.    ........++.++..+ ++|
T Consensus       433 ~i~~~~~----~~~~~~~~l~~ll~~l-l~g  458 (458)
T d1ibrb_         433 RICELLP----EAAINDVYLAPLLQCL-IEG  458 (458)
T ss_dssp             HHHHHGG----GGCCSTTTHHHHHHHH-HCC
T ss_pred             HHHHHhh----cccchhhHHHHHHHHH-hCc
Confidence            8876432    1223345566666655 444

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.6e-06  Score=86.57  Aligned_cols=272  Identities=12%  Similarity=0.115  Sum_probs=167.6

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccchHHHHh
Q 048113           41 IAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLENKLEIAS  120 (339)
Q Consensus        41 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  120 (339)
                      |..|++-+.+.|+++|..|+.-|.+.-..+...-..-....+++.|++.|+++++++|..|+.+|..+...-+...   -
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H
Confidence            4566777889999999999987776443111111111122468899999999999999999999999986433211   1


Q ss_pred             cchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CC---CCh--HHHHhcCcHHHHHHHhhccccCchHHH
Q 048113          121 SGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CH---QLI--SPIVSSGVTYCLLQLIHSSEKSSGLTE  194 (339)
Q Consensus       121 ~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~---~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~  194 (339)
                      ...++.|+..+.+           .+...+..+..+|..+.. .+   .+.  ...+-...++.+...+.+. .+..++.
T Consensus        82 ~~l~~~L~~~l~~-----------~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~  149 (1207)
T d1u6gc_          82 ETIVDTLCTNMLS-----------DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQL  149 (1207)
T ss_dssp             HHHHHHHHHHTTC-----------SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHH
T ss_pred             HHHHHHHHHHhcC-----------CchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC-CCHHHHH
Confidence            3467778877766           566677777777766532 11   111  1111112344444544443 2467788


Q ss_pred             HHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh-c
Q 048113          195 KAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV-D  273 (339)
Q Consensus       195 ~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~  273 (339)
                      .++.++...+...+..-....  ...++.++..+.++++.++..|+.+|..++...+..     .-...++.+++.+. +
T Consensus       150 ~al~~l~~l~~~~g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~-----~~~~~~~~ll~~l~~~  222 (1207)
T d1u6gc_         150 EALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI-----VFVDLIEHLLSELSKN  222 (1207)
T ss_dssp             HHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHccC
Confidence            888888843332222111111  235667777788888999999999999998764331     11345777776554 4


Q ss_pred             CCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCcccchHHHHHHHHHHHHh
Q 048113          274 GTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       274 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~l~~~v~~~  336 (339)
                      .+...+..+..++..++.....  .....-...++.++..+..+.+++++.|...+..++...
T Consensus       223 ~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         223 DSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             CSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence            4555666777788777765432  122223455565655555667888888888888887653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.5e-07  Score=91.10  Aligned_cols=264  Identities=13%  Similarity=0.182  Sum_probs=173.2

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR---QKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      |++.+.+.|++.|.-|+..|.+....   ..+.-....+++.|+..|++.++++|..|+++|..+....++..   . ..
T Consensus         8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~   83 (1207)
T d1u6gc_           8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ET   83 (1207)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HH
T ss_pred             HHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HH
Confidence            56778899999999998877765432   11111123467889999999999999999999999988533321   1 23


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHHhc--Ccc--c--hHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHH
Q 048113           82 IVPVLLEVLQCQSTTLIELTVAAMLILSS--CLE--N--KLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIA  155 (339)
Q Consensus        82 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~--~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~  155 (339)
                      .++.|+..+.+++...+..+..+|..+..  ...  .  -....-...++.+...+.+.          .+..++..++.
T Consensus        84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~----------~~~~v~~~al~  153 (1207)
T d1u6gc_          84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ----------EDVSVQLEALD  153 (1207)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC----------SCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC----------CCHHHHHHHHH
Confidence            56778887777777788888777766542  111  1  11111233556666666553          68889999999


Q ss_pred             HHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCC-HhhhHHHHhhCCcHHHHHHHhhc-CC
Q 048113          156 TLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSS-EDALQEIAATCGAIRALVETIEE-GS  232 (339)
Q Consensus       156 ~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~-~~~~~~i~~~~g~i~~Lv~lL~~-~~  232 (339)
                      +|..+.. .+..-... ...+++.++..+.+.  ...++..|+.+|+ .+... +.   ...  ...++.+++.+.. .+
T Consensus       154 ~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~--~~~vR~~A~~~l~-~l~~~~~~---~~~--~~~~~~ll~~l~~~~~  224 (1207)
T d1u6gc_         154 IMADMLSRQGGLLVNF-HPSILTCLLPQLTSP--RLAVRKRTIIALG-HLVMSCGN---IVF--VDLIEHLLSELSKNDS  224 (1207)
T ss_dssp             HHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCS--SHHHHHHHHHHHH-HHTTTC-------C--TTHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCC--CHHHHHHHHHHHH-HHHHHCCH---HHH--HHHHHHHHHHHccCCC
Confidence            9998855 33221111 113566677777764  5778999999999 55433 22   111  3567788876654 44


Q ss_pred             hHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccC
Q 048113          233 PQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCS  293 (339)
Q Consensus       233 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  293 (339)
                      ...+..++.++..++...+.....  .-...+|.+.+.+.+.++.+++.+..++..+....
T Consensus       225 ~~~~~~~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         225 MSTTRTYIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             SCSCTTHHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHcchhhHH--HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence            556666777888887654432111  11467899999999999999999999998886644

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.2e-05  Score=75.81  Aligned_cols=314  Identities=11%  Similarity=0.112  Sum_probs=181.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcC
Q 048113            5 LMDNLLNGERETQIQAANELGKLSRR-QKHKLV--ERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSG   81 (339)
Q Consensus         5 Lv~~L~s~~~~~~~~a~~~L~~l~~~-~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g   81 (339)
                      +...+.+.++..+..++..+..+... ....+.  -...++.++..+.++++.++..|+++++.++...   ...+....
T Consensus       374 ~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~  450 (861)
T d2bpta1         374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV---AESIDPQQ  450 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH---GGGSCTTT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHh---chhhhhHH
Confidence            34556788999999999999888764 222111  1346788899999999999999999999988731   22222334


Q ss_pred             ChHHHHHhhc---CCChhHHHHHHHHHHHHhc--CccchHHHH--hcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           82 IVPVLLEVLQ---CQSTTLIELTVAAMLILSS--CLENKLEIA--SSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        82 ~i~~Lv~lL~---~~~~~~~~~a~~~L~nLs~--~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                      .++.++..+.   ..++..+..+++++.++..  .+.....+.  -...+..++.......         .+..++..+.
T Consensus       451 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~  521 (861)
T d2bpta1         451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID---------NEFNARASAF  521 (861)
T ss_dssp             THHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC---------CGGGHHHHHH
T ss_pred             hhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhh---------hhHHHHHHHH
Confidence            4444444332   3456777888888877753  221111111  2235666666665421         4566788888


Q ss_pred             HHHHhhcC-CCCChHH-HHhc--CcHHHHHHHhhcccc---------CchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcH
Q 048113          155 ATLHNLST-CHQLISP-IVSS--GVTYCLLQLIHSSEK---------SSGLTEKAIALLENIVSSSEDALQEIAATCGAI  221 (339)
Q Consensus       155 ~~L~nLs~-~~~~~~~-i~~~--g~i~~Lv~ll~~~~~---------~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i  221 (339)
                      .++..+.. .++.... +...  ...+.+...+.....         ...+...+..++.......+.......+  ..+
T Consensus       522 ~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~l~  599 (861)
T d2bpta1         522 SALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLM  599 (861)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH--HHH
Confidence            88888765 3332222 2111  122233333322110         0122333334444222222222222221  345


Q ss_pred             HHHHHHhhcC-ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhh
Q 048113          222 RALVETIEEG-SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSK  300 (339)
Q Consensus       222 ~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~  300 (339)
                      +.+.+.+... +..+++.++.++..++...+....+.+-  ..+|.|...+.+.++.++..|..++..++.....  ...
T Consensus       600 ~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~--~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~--~~~  675 (861)
T d2bpta1         600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFR  675 (861)
T ss_dssp             HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGH
T ss_pred             HHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH--HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH--HhH
Confidence            6666666654 4667888888888887654443333322  3788899999999999999999999888765421  222


Q ss_pred             hhhhHHHHHHHHHHHhcC--cccchHHHHHHHHHHHHh
Q 048113          301 QLKNELVEQIMQEIDAEG--DTVAGTTLRLVEEMIAKL  336 (339)
Q Consensus       301 ~~~~~~~~~i~~~~~~~~--~~~~~~a~~~l~~~v~~~  336 (339)
                      ....+.++.++..+....  ..++..+..++.+++..+
T Consensus       676 ~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~  713 (861)
T d2bpta1         676 RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            233455666666554322  455777888888777654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.33  E-value=3.5e-08  Score=72.17  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHh
Q 048113           10 LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEV   89 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~l   89 (339)
                      .++|+.+|..|+++|..+         ....++.|+..|+++++.+|..|+++|+.+..           .+.++.|+.+
T Consensus         2 ~D~~~~VR~~A~~aL~~~---------~~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~   61 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRM---------GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKL   61 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSC---------SSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh---------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhh
Confidence            455666666666666543         24578899999999999999999999987654           2357899999


Q ss_pred             hcCCChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           90 LQCQSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        90 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      |.++++.++..|+.+|..+.          ..+.++.|..++++           .++.++..|+.+|.
T Consensus        62 l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d-----------~~~~vr~~A~~aL~  109 (111)
T d1te4a_          62 LEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAET-----------GTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTS-----------CCTHHHHHHHHHGG
T ss_pred             hccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcC-----------CCHHHHHHHHHHHH
Confidence            99999999999999997763          34568888899988           78999999998874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.7e-05  Score=69.51  Aligned_cols=277  Identities=13%  Similarity=0.144  Sum_probs=167.6

Q ss_pred             cCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHHhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCcc
Q 048113           38 RGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRIVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLE  113 (339)
Q Consensus        38 ~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~  113 (339)
                      .+.++.+...+.++  ++..+..++.++..++.........-.....++.++..+.++  +.+++..++.++.++.....
T Consensus       126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            46777888877653  667888888998888763222222222234577788887654  56789999999998875432


Q ss_pred             ch--HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhcCcHHHHHHHhhccccCc
Q 048113          114 NK--LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSSGVTYCLLQLIHSSEKSS  190 (339)
Q Consensus       114 ~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~  190 (339)
                      ..  .........+.+..++.+           .+++++..++.+|..+.. .++.-.........+.+...+.+.  ++
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~  272 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQC-----------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--ID  272 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTC-----------SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcC-----------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cH
Confidence            21  112223356666777777           799999999999999865 333221112222333344444443  46


Q ss_pred             hHHHHHHHHHHHhhcCCHhhh----------------------HHHHhhCCcHHHHHHHhhc-------CChHHHHHHHH
Q 048113          191 GLTEKAIALLENIVSSSEDAL----------------------QEIAATCGAIRALVETIEE-------GSPQCKEHAVA  241 (339)
Q Consensus       191 ~~~~~a~~~L~n~l~~~~~~~----------------------~~i~~~~g~i~~Lv~lL~~-------~~~~~~~~a~~  241 (339)
                      .++..++..+. .++......                      ....  ....+.+.+.+.+       ++..++..+..
T Consensus       273 ~~~~~a~~~l~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~  349 (458)
T d1ibrb_         273 EVALQGIEFWS-NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGV  349 (458)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH--HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHH--HHHhhhHHhhhhcchhhhccccccHHHHHHH
Confidence            77777777776 343211100                      0011  1223444444432       12346777888


Q ss_pred             HHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCCCcchhhhhhhHHHHHHHHHHHhcCccc
Q 048113          242 ILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSSFGSRSKQLKNELVEQIMQEIDAEGDTV  321 (339)
Q Consensus       242 ~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  321 (339)
                      ++..++...+.....     ..++.+.+.+++.++..|+.|..+|..++...... ..+......++.++..+.-....+
T Consensus       350 ~l~~l~~~~~~~~~~-----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~V  423 (458)
T d1ibrb_         350 CLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLIELMKDPSVVV  423 (458)
T ss_dssp             HHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-TTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHhccHhhhh-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHh-HHHHHHHHHHHHHHHHhCCCCHHH
Confidence            888887654433222     25677778888999999999999999998653210 122233455555555443344677


Q ss_pred             chHHHHHHHHHHHHh
Q 048113          322 AGTTLRLVEEMIAKL  336 (339)
Q Consensus       322 ~~~a~~~l~~~v~~~  336 (339)
                      |..|...|..+...+
T Consensus       424 R~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         424 RDTAAWTVGRICELL  438 (458)
T ss_dssp             HHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998887665

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.3e-05  Score=77.59  Aligned_cols=268  Identities=13%  Similarity=0.139  Sum_probs=169.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhhHH---
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKIRI---   77 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~~i---   77 (339)
                      +.|...+.|.|+++|..|-..|..+..++.     .+.+..|...+.+.  +.++|..|+-.|++.-.........-   
T Consensus         8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~-----~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~   82 (861)
T d2bpta1           8 QLLENSILSPDQNIRLTSETQLKKLSNDNF-----LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ   82 (861)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence            344455668999999999999988775421     23456677777553  67889999999988765322111100   


Q ss_pred             -----h----hcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-c-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCC
Q 048113           78 -----V----KSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-E-NKLEIASSGAIQRLVEILNGDLADDDNSYGRIS  146 (339)
Q Consensus        78 -----~----~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~  146 (339)
                           .    ....-..++..+.++++.++..++.++..++..+ + ++.    ...++.|+..+.+.          .+
T Consensus        83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~----------~~  148 (861)
T d2bpta1          83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAE----------QP  148 (861)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTT----------SC
T ss_pred             hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCC----------Cc
Confidence                 0    0112345677778888999999999998887432 1 110    24678888888773          56


Q ss_pred             HHHHHHHHHHHHhhcCCCCC-hHHHHhc--CcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHH
Q 048113          147 VQAKIDAIATLHNLSTCHQL-ISPIVSS--GVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRA  223 (339)
Q Consensus       147 ~~~~~~a~~~L~nLs~~~~~-~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~  223 (339)
                      ...+..|+.+|..++..-.. ...+...  ..+..+++.+.+...+..++..++.++.+.+...+.+-.........++.
T Consensus       149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (861)
T d2bpta1         149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV  228 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence            77888899999988753221 1111111  23444555555444457888899999985444444322111111346677


Q ss_pred             HHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHH-HHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          224 LVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGL-LQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       224 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      +...++++++.++..+..++..++...+......+.+  .+..+ .....+.++.++..+..++..++.
T Consensus       229 l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999986544333222222  33333 344667788899888888876654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=3e-05  Score=69.46  Aligned_cols=228  Identities=12%  Similarity=0.098  Sum_probs=152.1

Q ss_pred             cCCCHHHHHHHHHHHHHHHHH--HHHHHHh--cCChHHHHHHhcc-----------------CCHHHHHHHHHHHHHhcc
Q 048113           10 LNGERETQIQAANELGKLSRR--QKHKLVE--RGIIAPLISMLCS-----------------QDYEAIEAALLSLLSLAC   68 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~--~~~~i~~--~g~i~~Lv~lL~~-----------------~~~~~~~~A~~~L~~Ls~   68 (339)
                      .+++.+.+.-++.++..+...  +|..|..  ...++.|+..|..                 ...+++.+++-+++.|+.
T Consensus       175 ~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  254 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF  254 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT
T ss_pred             cccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc
Confidence            567778888888999888775  8887743  4466666666643                 134788999999999999


Q ss_pred             CCcchhhHHhhc--CChHHHHHhhcCCC-hhHHHHHHHHHHHHhcCcc--c----hHHHHhcchHHHHHHHhcCCCCCCC
Q 048113           69 GSERNKIRIVKS--GIVPVLLEVLQCQS-TTLIELTVAAMLILSSCLE--N----KLEIASSGAIQRLVEILNGDLADDD  139 (339)
Q Consensus        69 ~~~~~~~~i~~~--g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~--~----~~~i~~~g~i~~Lv~ll~~~~~~~~  139 (339)
                       +++....+.+.  +.++.|+.++.... +.+.+.++.++.|+.....  +    ...+...++++.+-.+...+.    
T Consensus       255 -~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~----  329 (477)
T d1ho8a_         255 -NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKY----  329 (477)
T ss_dssp             -SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCC----
T ss_pred             -CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCC----
Confidence             78888888876  45999999987654 5588888899999986432  1    233445565555444444443    


Q ss_pred             CccCCCCHHHHH---------------------HHHHHHH-hhcCCCCC---------hHHHHhc--CcHHHHHHHhhc-
Q 048113          140 NSYGRISVQAKI---------------------DAIATLH-NLSTCHQL---------ISPIVSS--GVTYCLLQLIHS-  185 (339)
Q Consensus       140 ~~~~~~~~~~~~---------------------~a~~~L~-nLs~~~~~---------~~~i~~~--g~i~~Lv~ll~~-  185 (339)
                           .++++..                     ....+.. +|.=+|..         ...+-+.  ..+..|+++|++ 
T Consensus       330 -----~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~  404 (477)
T d1ho8a_         330 -----SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  404 (477)
T ss_dssp             -----SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhc
Confidence                 2333222                     1111111 22112221         1222222  357889999973 


Q ss_pred             -------cccCchHHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 048113          186 -------SEKSSGLTEKAIALLENIVSSSEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICK  248 (339)
Q Consensus       186 -------~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  248 (339)
                             .++++.+...||.=++..+-..|.+|..+-+ -|+=..+.+++.++++.++.+|+.|+..+..
T Consensus       405 ~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         405 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                   1224556666776677566678888877765 7999999999999999999999999887754

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=0.00035  Score=67.44  Aligned_cols=273  Identities=14%  Similarity=0.110  Sum_probs=163.0

Q ss_pred             HHHHHHcCC--CHHHHHHHHHHHHHHHHH-HHHHHHh--cCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcchhh-
Q 048113            4 MLMDNLLNG--ERETQIQAANELGKLSRR-QKHKLVE--RGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERNKI-   75 (339)
Q Consensus         4 ~Lv~~L~s~--~~~~~~~a~~~L~~l~~~-~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~-   75 (339)
                      .|+..+.++  ++..+..++.++..++.+ ....+..  ..+++.++..+.+.  +.+++..|+.++.++.......-. 
T Consensus       132 ~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  211 (876)
T d1qgra_         132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK  211 (876)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            455666543  467788899999999887 3333333  44677788877554  578899999998887663222111 


Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-cchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-ENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                      .....-.++.+...+.+++++++..++.++..+.... +.-.........+.+...+..           .+.+++..++
T Consensus       212 ~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~  280 (876)
T d1qgra_         212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-----------DIDEVALQGI  280 (876)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC-----------SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-----------ccHHHHHHHH
Confidence            1111224566777788889999999999999988533 222222223344455555655           6777777777


Q ss_pred             HHHHhhcCCC-----------------C----ChHHHHhcCcHHHHHHHhhccc-----cCchHHHHHHHHHHHhhcCCH
Q 048113          155 ATLHNLSTCH-----------------Q----LISPIVSSGVTYCLLQLIHSSE-----KSSGLTEKAIALLENIVSSSE  208 (339)
Q Consensus       155 ~~L~nLs~~~-----------------~----~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~n~l~~~~  208 (339)
                      ..+..++...                 .    ..........++.+...+....     +...++..+..++. .++...
T Consensus       281 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~-~l~~~~  359 (876)
T d1qgra_         281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM-LLATCC  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHH-HHHHHh
Confidence            7666654311                 0    0011111123344444443321     12235666666666 443221


Q ss_pred             hhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 048113          209 DALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLL  288 (339)
Q Consensus       209 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~  288 (339)
                      ..  .+..  -.++.+.+.+.+++...++.++.++..+.......... -.-...++.+...+.+.++.++..|.+++..
T Consensus       360 ~~--~~~~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~  434 (876)
T d1qgra_         360 ED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (876)
T ss_dssp             GG--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hh--hhhh--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            11  1111  13344455556677888888888888887653332111 1223578899999999999999999999988


Q ss_pred             HhccC
Q 048113          289 LRDCS  293 (339)
Q Consensus       289 l~~~~  293 (339)
                      +++.-
T Consensus       435 ~~~~~  439 (876)
T d1qgra_         435 ICELL  439 (876)
T ss_dssp             HHHHC
T ss_pred             HHHHc
Confidence            87643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.98  E-value=3.4e-06  Score=61.08  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCC
Q 048113            3 EMLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIRIVKSGI   82 (339)
Q Consensus         3 ~~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~   82 (339)
                      +.|+..|.++++.+|..|+++|.++.        ..+.++.|..+|+++++.++..|+++|+.+..           .+.
T Consensus        25 ~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-----------~~~   85 (111)
T d1te4a_          25 EPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERV   85 (111)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc-----------cch
Confidence            56888999999999999999997654        23457889999999999999999999998754           235


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHH
Q 048113           83 VPVLLEVLQCQSTTLIELTVAAM  105 (339)
Q Consensus        83 i~~Lv~lL~~~~~~~~~~a~~~L  105 (339)
                      ++.|..+++++++.++..|+.+|
T Consensus        86 ~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          86 RAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHH
Confidence            78899999999999999988876

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.0004  Score=66.94  Aligned_cols=259  Identities=11%  Similarity=0.061  Sum_probs=163.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCcch-hhHH---------
Q 048113           10 LNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ--DYEAIEAALLSLLSLACGSERN-KIRI---------   77 (339)
Q Consensus        10 ~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~-~~~i---------   77 (339)
                      .|+|.+.|..|-..|..+..++.     .|.+..|...+.+.  +.++|..|+-.|.|.-..+... +...         
T Consensus        11 ~s~d~~~r~~Ae~~L~~~~~~~~-----~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~   85 (876)
T d1qgra_          11 VSPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA   85 (876)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred             hCcCHHHHHHHHHHHHHHHhcCh-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCH
Confidence            47899999999999998876421     34556677766543  5789999999998876522211 1110         


Q ss_pred             -hhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc-c-chHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           78 -VKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL-E-NKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        78 -~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                       .+...-..++..+.+++. .+..++.++..++..+ + +.    =.+.++.|.+.+.+++         .+...+..++
T Consensus        86 ~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~---------~~~~~~~~~l  151 (876)
T d1qgra_          86 NARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPN---------STEHMKESTL  151 (876)
T ss_dssp             HHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTT---------CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccc----cHHHHHHHHHHhcCCC---------CcHHHHHHHH
Confidence             011233467777776654 3445667777766432 1 11    1367999999887642         4678888899


Q ss_pred             HHHHhhcCCCCChHHHHh--cCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhh--HHHHhhCCcHHHHHHHhhc
Q 048113          155 ATLHNLSTCHQLISPIVS--SGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDAL--QEIAATCGAIRALVETIEE  230 (339)
Q Consensus       155 ~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~--~~i~~~~g~i~~Lv~lL~~  230 (339)
                      .+|..++..-.. ..+..  ...++.++..+.+.+.+.+++..++.++.+.+......-  ....  .-.++.+...+++
T Consensus       152 ~~l~~i~~~~~~-~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~--~~i~~~l~~~~~~  228 (876)
T d1qgra_         152 EAIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEATQC  228 (876)
T ss_dssp             HHHHHHHHHSCH-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHHHHHHHHhcC
Confidence            999988752211 11111  246778888887654456788888888884443333221  1111  2345667777788


Q ss_pred             CChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          231 GSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       231 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      +++.++..++.++..++...+..... .......+.+.....+..+.++..+...+..++.
T Consensus       229 ~~~~v~~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         229 PDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSGGGCHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            88999999999999998765443322 2333445556666777888888777776665543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.071  Score=44.45  Aligned_cols=203  Identities=12%  Similarity=0.078  Sum_probs=153.7

Q ss_pred             HHhhcCChHHHHHhhcCCChhHHHHHHHHHHHHhcCccc-h----HHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHH
Q 048113           76 RIVKSGIVPVLLEVLQCQSTTLIELTVAAMLILSSCLEN-K----LEIASSGAIQRLVEILNGDLADDDNSYGRISVQAK  150 (339)
Q Consensus        76 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-~----~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~  150 (339)
                      .+...+.+..|+..|..-+-+.+..++.+..++.....+ +    ..+...  -+.|..+++..          +++++-
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gy----------e~~eiA  131 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGY----------ESPEIA  131 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGG----------GSTTTH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhc----------CCcchh
Confidence            456678899999999999999999999999998864322 2    222221  13333344443          566677


Q ss_pred             HHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHhh--CCcHHHHHHHh
Q 048113          151 IDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAAT--CGAIRALVETI  228 (339)
Q Consensus       151 ~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~~--~g~i~~Lv~lL  228 (339)
                      ..+-..|....+.+...+.+.....+..+.+.++.+  .-++...|..++..++..++.........  ..++....++|
T Consensus       132 l~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL  209 (330)
T d1upka_         132 LNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL  209 (330)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh
Confidence            777777888888988899999998899999999874  58899999999998889888766666542  24667778899


Q ss_pred             hcCChHHHHHHHHHHHHhhccCchhHHHHH---Hh-cCChHHHHHhhhcCCHHHHHHHHHHHHHHhccCC
Q 048113          229 EEGSPQCKEHAVAILLLICKSCRDKYRSSI---LK-EGVMPGLLQLSVDGTWRAKNMARDLLLLLRDCSS  294 (339)
Q Consensus       229 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~-~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  294 (339)
                      .+++=-++..++..|..+-.+...  ...|   +. ..-+..++.++++.+..+|..|-.+.+.+..++.
T Consensus       210 ~s~NYVtrRqSlKLLgelLldr~N--~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         210 HSENYVTKRQSLKLLGELLLDRHN--FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHSGGG--HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhH--HHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence            988888899999999998765332  2333   22 3467788899999999999999999999988765

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.79  E-value=0.002  Score=52.40  Aligned_cols=101  Identities=13%  Similarity=0.070  Sum_probs=61.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHH-----HHHHH----HHHHHHhcCChHHHHHHhccCCHHHHHHHHHH-----HHHhccC
Q 048113            4 MLMDNLLNGERETQIQAANELG-----KLSRR----QKHKLVERGIIAPLISMLCSQDYEAIEAALLS-----LLSLACG   69 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~-----~l~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~-----L~~Ls~~   69 (339)
                      .|..+++++++++|..|+..|.     .+..+    .|......=..+.|..+++++++.++..++..     |..+..+
T Consensus        70 ~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D  149 (233)
T d1lrva_          70 ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRD  149 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTC
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcC
Confidence            4667778888888888876542     22222    44444443345666777777777777777653     3333332


Q ss_pred             -CcchhhHHhhcCChHHHHHhhcCCChhHHHHHHHH
Q 048113           70 -SERNKIRIVKSGIVPVLLEVLQCQSTTLIELTVAA  104 (339)
Q Consensus        70 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~  104 (339)
                       ++..|..+...-+.+.|..+++.+++.++..++..
T Consensus       150 ~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         150 EDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             SCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence             33445555555556666667777777777766644

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.34  E-value=0.0087  Score=48.45  Aligned_cols=62  Identities=10%  Similarity=-0.007  Sum_probs=32.2

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHH-----HHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHH
Q 048113          221 IRALVETIEEGSPQCKEHAVAIL-----LLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMAR  283 (339)
Q Consensus       221 i~~Lv~lL~~~~~~~~~~a~~~L-----~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~  283 (339)
                      .+.|..++++.++.++..++..|     ..+..+.....|....+. ..+.+++.+.+.++.+++.|.
T Consensus       164 ~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         164 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence            34556666666777776666432     233333333344444332 234455555666666666554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.62  Score=38.58  Aligned_cols=202  Identities=13%  Similarity=0.116  Sum_probs=147.3

Q ss_pred             HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCcchhhH----Hhhc-CChHHHHHhhcCCChhHHHHHHHHHHH
Q 048113           33 HKLVERGIIAPLISMLCSQDYEAIEAALLSLLSLACGSERNKIR----IVKS-GIVPVLLEVLQCQSTTLIELTVAAMLI  107 (339)
Q Consensus        33 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~~----i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~n  107 (339)
                      ..+...+.+..|+..|..-+-+.|..++.+..++-.....++..    +... .++..|+....  ++++-..+-..|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHH
Confidence            34456788999999888889999999999999998865555432    3332 34444444433  44555566567777


Q ss_pred             HhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcC-CCCChHHHHhc---CcHHHHHHHh
Q 048113          108 LSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLST-CHQLISPIVSS---GVTYCLLQLI  183 (339)
Q Consensus       108 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~---g~i~~Lv~ll  183 (339)
                      +...+.....|........+.+.++.           ++-++...|..++..+-. ++.....+...   ..+....++|
T Consensus       141 cik~e~lak~iL~s~~f~~fF~yv~~-----------~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL  209 (330)
T d1upka_         141 CIRHEPLAKIILWSEQFYDFFRYVEM-----------STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL  209 (330)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTC-----------SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHccHHHHHHHHHHcC-----------CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh
Confidence            77788777778888889999999999           799999999999998854 54444444443   3566777888


Q ss_pred             hccccCchHHHHHHHHHHHhhcCCHhhhHHH---HhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccC
Q 048113          184 HSSEKSSGLTEKAIALLENIVSSSEDALQEI---AATCGAIRALVETIEEGSPQCKEHAVAILLLICKSC  250 (339)
Q Consensus       184 ~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i---~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  250 (339)
                      .++  +--.+++++..|+. +-.+..|...+   +....-+..+..+|++.+..++-.|..+..-+..++
T Consensus       210 ~s~--NYVtrRqSlKLLge-lLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         210 HSE--NYVTKRQSLKLLGE-LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             TCS--SHHHHHHHHHHHHH-HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             cCC--chHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            774  45678899999994 54455554443   333456788899999999999999999988887764

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=1.1  Score=37.77  Aligned_cols=169  Identities=14%  Similarity=0.142  Sum_probs=110.1

Q ss_pred             HHHHHHcCCCH-HHHHHHHHHHHHHHHH-----HHHHHHhcCChHHHHHHhcc-----------CCHHHHHHHHHHHHHh
Q 048113            4 MLMDNLLNGER-ETQIQAANELGKLSRR-----QKHKLVERGIIAPLISMLCS-----------QDYEAIEAALLSLLSL   66 (339)
Q Consensus         4 ~Lv~~L~s~~~-~~~~~a~~~L~~l~~~-----~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~L   66 (339)
                      +.|..|+++-. +.....+..|+.-.+.     .+. | ..+|+..|+.+|..           .+...+...+++|..+
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~-F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkal   83 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQT-F-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   83 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHH-H-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHH-H-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Confidence            46777776533 3233333333332333     333 3 45677777776641           1356788899999999


Q ss_pred             ccCCcchhhHHhh-cCChHHHHHhhcCCChhHHHHHHHHHHHHhcCc---cchHHHH----------hcchHHHHHHHhc
Q 048113           67 ACGSERNKIRIVK-SGIVPVLLEVLQCQSTTLIELTVAAMLILSSCL---ENKLEIA----------SSGAIQRLVEILN  132 (339)
Q Consensus        67 s~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~~~~~i~----------~~g~i~~Lv~ll~  132 (339)
                      .. +..+...+.+ .+++..++..|.++.+.++..|..+|..++..+   .+...+.          +.+-...+++-++
T Consensus        84 mn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~  162 (343)
T d2bnxa1          84 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  162 (343)
T ss_dssp             TS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred             hc-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHh
Confidence            99 6777666655 588999999999999999999999998888532   2333332          2345667777776


Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCC-------hHHHHhcCcHHHHHHHhhcc
Q 048113          133 GDLADDDNSYGRISVQAKIDAIATLHNLSTCHQL-------ISPIVSSGVTYCLLQLIHSS  186 (339)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~-------~~~i~~~g~i~~Lv~ll~~~  186 (339)
                      +.          .+.+.+..++..+-.+....+.       |..+..+|.. .++..|+..
T Consensus       163 ~~----------~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~-~il~~l~~~  212 (343)
T d2bnxa1         163 SG----------TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELREI  212 (343)
T ss_dssp             TT----------SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTTC
T ss_pred             cc----------ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChH-HHHHHHHcc
Confidence            64          5788888888777777665443       3445566644 555666654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=1.4  Score=41.85  Aligned_cols=259  Identities=12%  Similarity=0.133  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cCChHHHH-HHhc--cCCHHHHHHHHHHHHHhccCCcchhhHHhh----cCChHHH
Q 048113           16 TQIQAANELGKLSRRQKHKLVE--RGIIAPLI-SMLC--SQDYEAIEAALLSLLSLACGSERNKIRIVK----SGIVPVL   86 (339)
Q Consensus        16 ~~~~a~~~L~~l~~~~~~~i~~--~g~i~~Lv-~lL~--~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~----~g~i~~L   86 (339)
                      .+..|...+..++......+..  ...+...+ ....  +.+...++.+...++.++............    ....+.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4555666666666652222111  11111122 2222  246677788888888776521111110000    1122223


Q ss_pred             H----HhhcC---CChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHh
Q 048113           87 L----EVLQC---QSTTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHN  159 (339)
Q Consensus        87 v----~lL~~---~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~n  159 (339)
                      .    ..+.+   ..+.++..+++++...+.... ...  -...++.++..|++           .+..++..|+.++..
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~-~~~--~~~~~~~l~~~L~~-----------~~~~V~~~a~~al~~  522 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ--LIELMPILATFLQT-----------DEYVVYTYAAITIEK  522 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH--HHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc-HHH--HHHHHHHHHHHhCC-----------CchhHHHHHHHHHHH
Confidence            2    23333   345688888888888775332 121  13578899999988           789999999999999


Q ss_pred             hcCCCCCh---------HHHHh--cCcHHHHHHHhhccccCc-h--HHHHHHHHHHHhhcCCHhhhHHHHhhCCcHHHHH
Q 048113          160 LSTCHQLI---------SPIVS--SGVTYCLLQLIHSSEKSS-G--LTEKAIALLENIVSSSEDALQEIAATCGAIRALV  225 (339)
Q Consensus       160 Ls~~~~~~---------~~i~~--~g~i~~Lv~ll~~~~~~~-~--~~~~a~~~L~n~l~~~~~~~~~i~~~~g~i~~Lv  225 (339)
                      ++......         ..+..  ...++.++..+....... .  ....++.++...+...++.......  ..++.|+
T Consensus       523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~--~i~~~l~  600 (959)
T d1wa5c_         523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFI  600 (959)
T ss_dssp             HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHH
T ss_pred             HHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            87532211         11111  023445555554422111 1  1122444444222111111111111  2334444


Q ss_pred             HHhh----cC-ChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcCCHHHHHHHHHHHHHHhc
Q 048113          226 ETIE----EG-SPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       226 ~lL~----~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~A~~~L~~l~~  291 (339)
                      ..+.    ++ ++........++..+....+...... .....+|.+...+..........+..++..+..
T Consensus       601 ~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            4432    22 35555566666666654332322222 334567888777776666666666776665544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.07  E-value=1  Score=37.75  Aligned_cols=153  Identities=14%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHHHHH-HHH-HHHhcCChHHHHHHh----ccCCHHHHHHHHHHHHHhccCCcchhhHHhhcCChHH
Q 048113           12 GERETQIQAANELGKLSRR-QKH-KLVERGIIAPLISML----CSQDYEAIEAALLSLLSLACGSERNKIRIVKSGIVPV   85 (339)
Q Consensus        12 ~~~~~~~~a~~~L~~l~~~-~~~-~i~~~g~i~~Lv~lL----~~~~~~~~~~A~~~L~~Ls~~~~~~~~~i~~~g~i~~   85 (339)
                      +++..+..+.-+++.+... +.. .-.....++.+..++    +.++.+.+..++++|+|+..  +         +.++.
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~  207 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKK  207 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHH
Confidence            3566666666666666654 111 001122344444443    34566666777778877754  2         23566


Q ss_pred             HHHhhcCC-------ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHH
Q 048113           86 LLEVLQCQ-------STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAIATLH  158 (339)
Q Consensus        86 Lv~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~  158 (339)
                      |.+++...       +..++..|+++|.+++..++.+       +.+.+..++.+..         .++++|..|..+|.
T Consensus       208 l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~---------e~~EvRiaA~~~lm  271 (336)
T d1lsha1         208 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVA---------IKSELRIRSCIVFF  271 (336)
T ss_dssp             HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTT---------SCHHHHHHHHHHHH
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCC---------CChHHHHHHHHHHH
Confidence            66666431       3557778888877776544311       3455666665543         67788887777765


Q ss_pred             hhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHH
Q 048113          159 NLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLE  201 (339)
Q Consensus       159 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  201 (339)
                      ..  .|.       ...+..+...+.. +++.++..-....|.
T Consensus       272 ~t--~P~-------~~~l~~i~~~l~~-E~~~QV~sfv~S~l~  304 (336)
T d1lsha1         272 ES--KPS-------VALVSMVAVRLRR-EPNLQVASFVYSQMR  304 (336)
T ss_dssp             HT--CCC-------HHHHHHHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred             hc--CCC-------HHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            52  222       1134455666644 234555555556666

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.89  E-value=0.73  Score=38.78  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHhccC-------CHHHHHHHHHHHHHhccCCcchhhH
Q 048113            4 MLMDNLLNGERETQIQAANELGKLSRRQKHKLVERGIIAPLISMLCSQ-------DYEAIEAALLSLLSLACGSERNKIR   76 (339)
Q Consensus         4 ~Lv~~L~s~~~~~~~~a~~~L~~l~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~~~~~~~~   76 (339)
                      .+......++.+.+..++++|+|+-        ..+.++.|..++.+.       +..+|..|.++|+.++..++..   
T Consensus       176 ~l~~~~~~~~~~~~~~~LkaLGN~g--------~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~---  244 (336)
T d1lsha1         176 LLSQSSDRAKEEEIVLALKALGNAG--------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---  244 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHT--------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---
T ss_pred             HHHHhhcccchHHHHHHHHHHhccC--------CHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH---
Confidence            3344455777777888888888764        245677777777542       5789999999999998843321   


Q ss_pred             HhhcCChHHHHHhhcCC--ChhHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHhcCCCCCCCCccCCCCHHHHHHHH
Q 048113           77 IVKSGIVPVLLEVLQCQ--STTLIELTVAAMLILSSCLENKLEIASSGAIQRLVEILNGDLADDDNSYGRISVQAKIDAI  154 (339)
Q Consensus        77 i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~  154 (339)
                           +.+.+.+++.+.  +.++|..|...|...  . +..      ..+..+...+..+          .+..+.....
T Consensus       245 -----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--~-P~~------~~l~~i~~~l~~E----------~~~QV~sfv~  300 (336)
T d1lsha1         245 -----VQEIVLPIFLNVAIKSELRIRSCIVFFES--K-PSV------ALVSMVAVRLRRE----------PNLQVASFVY  300 (336)
T ss_dssp             -----HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--C-CCH------HHHHHHHHHHTTC----------SCHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCCCChHHHHHHHHHHHhc--C-CCH------HHHHHHHHHHHhC----------cHHHHHHHHH
Confidence                 224466666544  678888887777552  2 221      2477888888765          7899999999


Q ss_pred             HHHHhhcCCC
Q 048113          155 ATLHNLSTCH  164 (339)
Q Consensus       155 ~~L~nLs~~~  164 (339)
                      ..|.+++.+.
T Consensus       301 S~l~~la~s~  310 (336)
T d1lsha1         301 SQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhCC
Confidence            9999998743

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.94  E-value=0.36  Score=46.26  Aligned_cols=139  Identities=11%  Similarity=0.094  Sum_probs=98.9

Q ss_pred             HHHHHHHhcCCCCCCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHh
Q 048113          124 IQRLVEILNGDLADDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENI  203 (339)
Q Consensus       124 i~~Lv~ll~~~~~~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~  203 (339)
                      ++.+..+|...          -+++.++.|-.-|..+..++         |....|++++.+...+..++..|+-.|.|.
T Consensus         4 ~~~l~~ll~~s----------~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~   64 (959)
T d1wa5c_           4 LETVAKFLAES----------VIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNF   64 (959)
T ss_dssp             HHHHHHHHHHT----------TSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC----------CChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            46677777663          57778888998898886665         577888888887654567888888888865


Q ss_pred             hcC-----------CHhhhHHHHhhCCcHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh
Q 048113          204 VSS-----------SEDALQEIAATCGAIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV  272 (339)
Q Consensus       204 l~~-----------~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~  272 (339)
                      +..           .++.|..+.      ..|+..+.++++.++...+.++..++..+.++..     -+.+|.|.+.+.
T Consensus        65 i~~~W~~~~~~~~i~~e~k~~Ik------~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~  133 (959)
T d1wa5c_          65 IKRKWVDENGNHLLPANNVELIK------KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLS  133 (959)
T ss_dssp             HHHHSBCSSSCBSSCHHHHHHHH------HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCC
T ss_pred             HHHhcccccccCCCCHHHHHHHH------HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhC
Confidence            532           123333333      3456666667788888888898888764322111     257888999999


Q ss_pred             cCCHHHHHHHHHHHHHHhcc
Q 048113          273 DGTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       273 ~~~~~~~~~A~~~L~~l~~~  292 (339)
                      ++++..+..+..+|..+.+.
T Consensus       134 s~~~~~~~~~L~~l~~i~k~  153 (959)
T d1wa5c_         134 NDDMVTNKGVLTVAHSIFKR  153 (959)
T ss_dssp             SSCTTHHHHHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            88888889999999888753

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.24  E-value=6.2  Score=32.82  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             Ccchh-hHHhhcCChHHHHHhhcC----C-------ChhHHHHHHHHHHHHhcCccchHHHH-hcchHHHHHHHhcCCCC
Q 048113           70 SERNK-IRIVKSGIVPVLLEVLQC----Q-------STTLIELTVAAMLILSSCLENKLEIA-SSGAIQRLVEILNGDLA  136 (339)
Q Consensus        70 ~~~~~-~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~  136 (339)
                      ++..+ ..| ..+|+..|+.+|..    +       +......++.+|..+..+..+...+. ..+++..++..+.+   
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s---  109 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP---  109 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT---
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCC---
Confidence            34333 344 66788888887631    1       13467788899999988777755554 66899999998888   


Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhhcCCCCChHHHHhcCcHHHHHHHhhccccCchHHHHHHHHHHHhhcCCHhhhHHHHh
Q 048113          137 DDDNSYGRISVQAKIDAIATLHNLSTCHQLISPIVSSGVTYCLLQLIHSSEKSSGLTEKAIALLENIVSSSEDALQEIAA  216 (339)
Q Consensus       137 ~~~~~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n~l~~~~~~~~~i~~  216 (339)
                              ..+.++..|...|..+|..+++.      ++                 ...++.++. ..       ....+
T Consensus       110 --------~~~~tr~~a~elL~~lc~~~~~~------~g-----------------~~~vL~Al~-~~-------~~~~e  150 (343)
T d2bnxa1         110 --------AVPNMMIDAAKLLSALCILPQPE------DM-----------------NERVLEAMT-ER-------AEMDE  150 (343)
T ss_dssp             --------TSHHHHHHHHHHHHHHHTCCSST------TH-----------------HHHHHHHHH-HH-------HHHHT
T ss_pred             --------CchHHHHHHHHHHHHHHhccCCC------ch-----------------HHHHHHHHH-HH-------HHhcC
Confidence                    79999999999999998743211      11                 122222232 11       11122


Q ss_pred             hCCcHHHHHHHhhcCC-hHHHHHHHHHHHHhhccCch-----hHHHHHHhcCChHHHHHhhhcCCHHH
Q 048113          217 TCGAIRALVETIEEGS-PQCKEHAVAILLLICKSCRD-----KYRSSILKEGVMPGLLQLSVDGTWRA  278 (339)
Q Consensus       217 ~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~g~i~~L~~ll~~~~~~~  278 (339)
                       .+-+..+++.+++++ ...+..+...+-.+....+.     ..|..+...|..+.+-++-...++.+
T Consensus       151 -~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         151 -VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             -SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             -CCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence             456677777776543 44444333333333332221     35566667787777776655556554

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.62  Score=33.91  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhc
Q 048113          220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~  291 (339)
                      ++..|-+-++++++..+..|+..|-.+..+.+..+...+.....+..|++++..      .++.++.+...++...+.
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            566677778889999999999999888888777788888888899999999863      468899999999988766

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.48  E-value=0.62  Score=34.00  Aligned_cols=72  Identities=11%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhcC-CHHHHHHHHHHHHHHhc
Q 048113          220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVDG-TWRAKNMARDLLLLLRD  291 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~A~~~L~~l~~  291 (339)
                      ++..|.+-|+++++.++..|+..|-.+..+++......+...+.+..|.+++.+. +..++.+...++...+.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            5677777888899999999999999988887776777777788899999988665 66789999999988765

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=1.2  Score=32.40  Aligned_cols=72  Identities=21%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhh------cCCHHHHHHHHHHHHHHhc
Q 048113          220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSV------DGTWRAKNMARDLLLLLRD  291 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~~~~~A~~~L~~l~~  291 (339)
                      ++..|-+-|.++++.++..|+..|-.+..+++..+...+...+++..|++++.      ..+..++.+...++..-+.
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            46667777888999999999999999998888888888888999999999985      3567899999999977654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.01  E-value=1.6  Score=31.82  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             cHHHHHHHhhcCChHHHHHHHHHHHHhhccCchhHHHHHHhcCChHHHHHhhhc------CCHHHHHHHHHHHHHHhcc
Q 048113          220 AIRALVETIEEGSPQCKEHAVAILLLICKSCRDKYRSSILKEGVMPGLLQLSVD------GTWRAKNMARDLLLLLRDC  292 (339)
Q Consensus       220 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~A~~~L~~l~~~  292 (339)
                      ++..|-+-++++++..+..|+..|-.+..+.+..+...+.....+..|++++..      .++.++.+...+++.-+..
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~  118 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence            556677777888999999999999988888777788888888899999999864      3678999999999888763