Citrus Sinensis ID: 048118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY
Secondary Structure (PSIPRED)
cccccEEccccccccccEEEEEEccccccEEEEccccccEEEEEcccccccccEEcEEcccccccEEEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccccEEEEEEcccccccEEEEEEccccEEEEEccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEccEEEEEEccccccEEEEEEcccccEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccccEEEEEEEccccEEEEEcccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccc
Coil and Loop (DISEMBL)
MAEGLVLKGTMRAHTDMVTAIatpidnsdmivtasRDKSIIVWHLTKEEKTYGVArrrltghshfvqdvvlssdgqfvghtKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECkytiqegdahtewvscvrfspntlqptivsaswDRTVKVWNLSNCKLRATLaghtgyvntvavspdgslcasggkdgVILLWDLaegkrlysldAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEaekseattatttikkkniyctslnwsvdgstlfsgytdgvirVWGIGRY
Flexible Loop (DISEMBL)
MAEGLVLKGTMRAHTDMVTAiatpidnsdmiVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVafsidnrqivsasrdRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDlkteaekseattatttikkkniycTSLNWsvdgstlfsgytdgvirVWGIGRY
Low Complexity Region (SEG)
MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLkteaekseattatttikkkNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY
Disordered region (IsUnstruct)
******LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL**********TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG**
Disordered Region (DISOPRED)
MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY
Disordered Region (DISEMBL)
MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY
Disordered Region (DISPRO)
****LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
O24076	325	Guanine nucleotide-bindin	N/A	no	0.993	0.926	0.840	1e-156
Q39836	325	Guanine nucleotide-bindin	yes	no	0.993	0.926	0.831	1e-155
O24456	327	Guanine nucleotide-bindin	yes	no	0.996	0.923	0.804	1e-150
Q9LV28	326	Guanine nucleotide-bindin	no	no	0.996	0.926	0.795	1e-150
Q9C4Z6	326	Guanine nucleotide-bindin	no	no	0.996	0.926	0.795	1e-150
Q39336	327	Guanine nucleotide-bindin	N/A	no	0.996	0.923	0.801	1e-149
P93340	326	Guanine nucleotide-bindin	N/A	no	0.986	0.917	0.766	1e-143
P49026	326	Guanine nucleotide-bindin	N/A	no	0.986	0.917	0.763	1e-142
P49027	334	Guanine nucleotide-bindin	yes	no	0.950	0.862	0.656	1e-121
P25387	318	Guanine nucleotide-bindin	N/A	no	0.960	0.915	0.645	1e-119

>sp|O24076|GBLP_MEDSA Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1

 Score =  552 bits (1422), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/327 (84%), Positives = 289/327 (88%), Gaps = 26/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVL+GTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+WHLTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+T QPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDLKTEA+   A    TT KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAD--AAIGGDTTTKKKVIYCTS 298

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 299 LNWSADGSTLFSGYTDGVVRVWGIGRY 325

Plays a role in hormone-mediated cell division.
Medicago sativa (taxid: 3879)

>sp|Q39836|GBLP_SOYBN Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1

 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/327 (83%), Positives = 286/327 (87%), Gaps = 26/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVLKGTMRAHTD+VTAIATPIDNSDMIVTASRD+SII+WHLTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLKGTMRAHTDVVTAIATPIDNSDMIVTASRDRSIILWHLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA+ +         KKK IYCTS
Sbjct: 241 CFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSG--GGNANKKKVIYCTS 298

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV RVW IGRY
Sbjct: 299 LNWSADGSTLFSGYTDGVARVWAIGRY 325

Glycine max (taxid: 3847)

>sp|O24456|GBLPA_ARATH Guanine nucleotide-binding protein subunit beta-like protein A OS=Arabidopsis thaliana GN=RACK1A PE=1 SV=2

 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/328 (80%), Positives = 286/328 (87%), Gaps = 26/328 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVLKGTMRAHTDMVTAIATPIDN+D+IV+ASRDKSII+W LTK++K YGVA+RRLT
Sbjct: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFV+DVVLSSDGQF                        VGHTKDVLSVAFS+DNRQI
Sbjct: 61  GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155
           VSASRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSASWD+TVKVWN
Sbjct: 121 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 180

Query: 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA 215
           LSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHA
Sbjct: 181 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 240

Query: 216 LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT 275
           LCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDLK EAEK++ +    T K+K IYCT
Sbjct: 241 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT-KRKVIYCT 299

Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           SLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct: 300 SLNWSADGSTLFSGYTDGVIRVWGIGRY 327

Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV28|GPLPC_ARATH Guanine nucleotide-binding protein subunit beta-like protein C OS=Arabidopsis thaliana GN=RACK1C PE=2 SV=1

 Score =  531 bits (1367), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/327 (79%), Positives = 283/327 (86%), Gaps = 25/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVLKG MRAHTD+VTAIATPIDNSD+IVTASRDKSII+W LTK++K+YGVA+RRLT
Sbjct: 1   MAEGLVLKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFV+DVVLSSDGQF                        VGHTKDVLSVAFS DNRQI
Sbjct: 61  GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTI EGD H EWVSCVRFSPNTL PTIVSASWD+TVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
            NCKLR +L GH+GY+NTVAVSPDGSLCASGGKDGVILLWDLAEGK+LYSL+AG++IH+L
Sbjct: 181 QNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SI+IWDLESKS+VEDLKVDLK+EAEK+E    T   +KK IYCTS
Sbjct: 241 CFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKSEAEKNEGGVGTGN-QKKVIYCTS 299

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 300 LNWSADGSTLFSGYTDGVVRVWGIGRY 326

Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C4Z6|GPLPB_ARATH Guanine nucleotide-binding protein subunit beta-like protein B OS=Arabidopsis thaliana GN=RACK1B PE=2 SV=1

 Score =  529 bits (1363), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/327 (79%), Positives = 282/327 (86%), Gaps = 25/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVLKGTM AHTDMVTAIATP+DNSD+IVT+SRDKSII+W LTKE+K+YGVA+RR+T
Sbjct: 1   MAEGLVLKGTMCAHTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFS DNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTI E D H EWVSCVRFSPNTL PTIVSASWD+TVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
            NCKLR TLAGH+GY+NTVAVSPDGSLCASGGKDGVILLWDLAEGK+LYSL+AG++IH+L
Sbjct: 181 QNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SI+IWDLESKS+VEDLKVDLK EAEK++ +T     K K IYCTS
Sbjct: 241 CFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKAEAEKTDGSTGIGN-KTKVIYCTS 299

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DG+TLFSGYTDGVIRVWGIGRY
Sbjct: 300 LNWSADGNTLFSGYTDGVIRVWGIGRY 326

Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39336|GBLP_BRANA Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1

 Score =  528 bits (1361), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/328 (80%), Positives = 285/328 (86%), Gaps = 26/328 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVLKGTMRAHTDMVTAIATPIDNSD IV+ASRDKSIIVW LTK++K+YGV +RRLT
Sbjct: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDTIVSASRDKSIIVWKLTKDDKSYGVRQRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFV+DVVLSSDGQF                        VGHTKDVLSVAFS+DNRQI
Sbjct: 61  GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155
           VSASRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSAS D+TVKVWN
Sbjct: 121 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASCDKTVKVWN 180

Query: 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA 215
           LSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHA
Sbjct: 181 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 240

Query: 216 LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT 275
           LCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDLK EAEKS+  + T   K+K IYCT
Sbjct: 241 LCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDG-SGTAATKRKVIYCT 299

Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           SLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct: 300 SLNWSADGSTLFSGYTDGVIRVWGIGRY 327

Brassica napus (taxid: 3708)

>sp|P93340|GBLP_NICPL Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  509 bits (1310), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/325 (76%), Positives = 275/325 (84%), Gaps = 26/325 (8%)

Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GTMRAHTD VTAIATP+DNSDMIVT+SRDKSIIVW LTK+   YGV RRRLTGH
Sbjct: 4   ESLVLRGTMRAHTDWVTAIATPVDNSDMIVTSSRDKSIIVWSLTKDGPQYGVPRRRLTGH 63

Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
            HFVQDVVLSSDG                        +FVGHTKDVLSVAFS DNRQIVS
Sbjct: 64  GHFVQDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSADNRQIVS 123

Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158
           ASRD++I+LWNTLGECKY IQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+N
Sbjct: 124 ASRDKSIRLWNTLGECKYIIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTN 183

Query: 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218
           CKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCF
Sbjct: 184 CKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCF 243

Query: 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN 278
           SPNRYWLCAATE SIKIWDLESK+IV+DLKVDLK E+E S   TA+   K K IYCTSL 
Sbjct: 244 SPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASG--KNKVIYCTSLG 301

Query: 279 WSVDGSTLFSGYTDGVIRVWGIGRY 303
           WS DGSTLFSGYTDG+IRVWGIGR+
Sbjct: 302 WSADGSTLFSGYTDGLIRVWGIGRF 326

May have a role in cell division.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P49026|GBLP_TOBAC Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1

 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/325 (76%), Positives = 275/325 (84%), Gaps = 26/325 (8%)

Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GTMRAHTD VTAIAT +DNSDMIVT+SRDKSIIVW +TK+   YGV RRRLTGH
Sbjct: 4   ESLVLRGTMRAHTDWVTAIATAVDNSDMIVTSSRDKSIIVWSITKDGPQYGVPRRRLTGH 63

Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
            HFVQDVVLSSDG                        +FVGHTKDVLSVAFS+DNRQIVS
Sbjct: 64  GHFVQDVVLSSDGMFALSGSWDGELRLWDLQAGTTARRFVGHTKDVLSVAFSVDNRQIVS 123

Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158
           ASRD++I+LWNTLGECKYTIQ+GD+H++WVSCVRFSPN LQPTIVS SWDRTVK+WNL+N
Sbjct: 124 ASRDKSIRLWNTLGECKYTIQDGDSHSDWVSCVRFSPNNLQPTIVSGSWDRTVKIWNLTN 183

Query: 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218
           CKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCF
Sbjct: 184 CKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCF 243

Query: 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN 278
           SPNRYWLCAATE SIKIWDLESKSIV+DLKVDLK E+E S   TA+   K K IYCTSL+
Sbjct: 244 SPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASG--KNKVIYCTSLS 301

Query: 279 WSVDGSTLFSGYTDGVIRVWGIGRY 303
           WS DGSTLFSGYTDG+IRVWGI RY
Sbjct: 302 WSADGSTLFSGYTDGLIRVWGIDRY 326

May have a role in cell division.

Nicotiana tabacum (taxid: 4097)

>sp|P49027|GBLPA_ORYSJ Guanine nucleotide-binding protein subunit beta-like protein A OS=Oryza sativa subsp. japonica GN=RACK1A PE=1 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/338 (65%), Positives = 244/338 (72%), Gaps = 50/338 (14%)

Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKT---------YG 53
           E LVL G M  H D+VTAIATPIDNS  IV++SRDKS++VW LT   +          YG
Sbjct: 6   ESLVLAGVMHGHNDVVTAIATPIDNSPFIVSSSRDKSLLVWDLTNPVQNVGEGAGASEYG 65

Query: 54  VARRRLTGHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAF 89
           V  RRLTGHSHFVQDVVLSSDGQF                        VGH KDVLSVAF
Sbjct: 66  VPFRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLSTGVTTRRFVGHDKDVLSVAF 125

Query: 90  SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA----HTEWVSCVRFSPNTLQPTIVSA 145
           S+DNRQIVSASRDRTIKLWNTLGECKYTI         H  WVSCVRFSPNT QPTIVS 
Sbjct: 126 SVDNRQIVSASRDRTIKLWNTLGECKYTIGGDLGGGEGHNGWVSCVRFSPNTFQPTIVSG 185

Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 205
           SWDRTVKVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLY
Sbjct: 186 SWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLY 245

Query: 206 SLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATT 265
           SLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++              
Sbjct: 246 SLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVS----------- 294

Query: 266 TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
             K + +YCTSLNWS DGSTL++GYTDG IR++ I  +
Sbjct: 295 --KNQMLYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330

Component of the RACK1 regulatory proteins that functions in innate immunity by interacting with multiple proteins in the RAC1 immune complex. Acts as positive regulator of reactive oxygen species (ROS) production and is required for resistance against rice blast (M.grisea) infection.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P25387|GBLP_CHLRE Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 244/327 (74%), Gaps = 36/327 (11%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL 59
           MAE L L+ T++ HT+ VTAIATP+D +S+ +++ASRDKS++VW L + E  YG AR+ L
Sbjct: 1   MAETLTLRATLKGHTNWVTAIATPLDPSSNTLLSASRDKSVLVWELERSESNYGYARKAL 60

Query: 60  TGHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQ 95
            GHSHFVQDVV+SSDGQF                        VGHTKDVLSVAFS+DNRQ
Sbjct: 61  RGHSHFVQDVVISSDGQFCLTGSWDGTLRLWDLNTGTTTRRFVGHTKDVLSVAFSVDNRQ 120

Query: 96  IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155
           IVS SRD+TIKLWNTLGECKYTI E + HTEWVSCVRFSP T  P IVS  WD+ VKVWN
Sbjct: 121 IVSGSRDKTIKLWNTLGECKYTIGEPEGHTEWVSCVRFSPMTTNPIIVSGGWDKMVKVWN 180

Query: 156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA 215
           L+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLYSLDAG VIH 
Sbjct: 181 LTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAGDVIHC 240

Query: 216 LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT 275
           LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +    ++K++             YC 
Sbjct: 241 LCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCV 289

Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGIGR 302
           SL WS DGSTL+SGYTDG IRVW +G 
Sbjct: 290 SLAWSADGSTLYSGYTDGQIRVWAVGH 316

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
357521565	325	Guanine nucleotide-binding protein subun	0.993	0.926	0.844	1e-155
388497028	325	unknown [Medicago truncatula]	0.993	0.926	0.844	1e-155
449439103	327	PREDICTED: guanine nucleotide-binding pr	1.0	0.926	0.831	1e-155
3023847	325	RecName: Full=Guanine nucleotide-binding	0.993	0.926	0.840	1e-155
212292267	324	Rack [Phaseolus vulgaris]	0.990	0.925	0.840	1e-154
225456096	327	PREDICTED: guanine nucleotide-binding pr	1.0	0.926	0.847	1e-154
258406674	324	RACK1 [Phaseolus vulgaris]	0.990	0.925	0.837	1e-154
255577354	328	receptor for activated protein kinase C,	1.0	0.923	0.838	1e-154
224121218	328	predicted protein [Populus trichocarpa]	0.993	0.917	0.821	1e-154
359806172	325	uncharacterized protein LOC100778205 [Gl	0.993	0.926	0.834	1e-154

>gi|357521565|ref|XP_003631071.1| Guanine nucleotide-binding protein subunit beta-like protein [Medicago truncatula] gi|355525093|gb|AET05547.1| Guanine nucleotide-binding protein subunit beta-like protein [Medicago truncatula]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/327 (84%), Positives = 290/327 (88%), Gaps = 26/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVL+GTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+WHLTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDLKTEA+   A    TT KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAD--AAIGGDTTTKKKVIYCTS 298

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 299 LNWSADGSTLFSGYTDGVVRVWGIGRY 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497028|gb|AFK36580.1| unknown [Medicago truncatula]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/327 (84%), Positives = 289/327 (88%), Gaps = 26/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVL+GTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+WHLTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG +IHAL
Sbjct: 181 TNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGFIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDLKTEA+   A    TT KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAD--AAIGGDTTTKKKVIYCTS 298

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 299 LNWSADGSTLFSGYTDGVVRVWGIGRY 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439103|ref|XP_004137327.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Cucumis sativus] gi|449497541|ref|XP_004160431.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Cucumis sativus]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/327 (83%), Positives = 288/327 (88%), Gaps = 24/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVL+GTMRAHTDMVTAIATPIDNSDMIVT+SRDKSII+W LTKEEKTYGV +RRL 
Sbjct: 1   MAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIIMWRLTKEEKTYGVPQRRLN 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGH+KDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGNTSRRFVGHSKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSPNTLQPTIVSASWD+TVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDLKTEAEK++ T A T  K K IYCTS
Sbjct: 241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTS 300

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           L+WS DGSTLF GYTDGV+RVWGIGRY
Sbjct: 301 LSWSADGSTLFGGYTDGVVRVWGIGRY 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3023847|sp|O24076.1|GBLP_MEDSA RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein gi|2385376|emb|CAA69934.1| G protein beta subunit-like [Medicago sativa subsp. x varia]

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/327 (84%), Positives = 289/327 (88%), Gaps = 26/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVL+GTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+WHLTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+T QPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTPQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDLKTEA+   A    TT KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAD--AAIGGDTTTKKKVIYCTS 298

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 299 LNWSADGSTLFSGYTDGVVRVWGIGRY 325

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212292267|gb|ACJ24167.1| Rack [Phaseolus vulgaris]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/327 (84%), Positives = 288/327 (88%), Gaps = 27/327 (8%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVLKGTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+W LTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLKGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWQLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+ DAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDSDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA   + TT   T KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA---DGTTGGNTNKKKVIYCTS 297

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVW IGRY
Sbjct: 298 LNWSADGSTLFSGYTDGVVRVWAIGRY 324

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456096|ref|XP_002281279.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein isoform 1 [Vitis vinifera] gi|359491001|ref|XP_003634197.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein isoform 2 [Vitis vinifera] gi|147784318|emb|CAN61810.1| hypothetical protein VITISV_026180 [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/327 (84%), Positives = 290/327 (88%), Gaps = 24/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAE LVL+GTMRAHTDMVTAIATPIDNSDMIVT+SRDKSII+WHLTK++KTYGV RRRLT
Sbjct: 1   MAETLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWHLTKDDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFS+DNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSVDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+ DAH++WVSCVRFSPN LQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDADAHSDWVSCVRFSPNNLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLRATLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA+IHAL
Sbjct: 181 TNCKLRATLAGHGGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSE TT T   K K IYCTS
Sbjct: 241 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEDTTTTAKKKGKIIYCTS 300

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           L+WS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 301 LSWSADGSTLFSGYTDGVVRVWGIGRY 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|258406674|gb|ACV72060.1| RACK1 [Phaseolus vulgaris]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/327 (83%), Positives = 288/327 (88%), Gaps = 27/327 (8%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAEGLVL+GTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+W LTKE+KTYGV RRRLT
Sbjct: 1   MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWQLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+ DAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDSDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA   + TT   T KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA---DGTTGGNTNKKKVIYCTS 297

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVW IGRY
Sbjct: 298 LNWSADGSTLFSGYTDGVVRVWAIGRY 324

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577354|ref|XP_002529557.1| receptor for activated protein kinase C, putative [Ricinus communis] gi|223530969|gb|EEF32826.1| receptor for activated protein kinase C, putative [Ricinus communis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/328 (83%), Positives = 288/328 (87%), Gaps = 25/328 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MAE L+L GTMRAHTD VTAIATPIDNSDMIVTASRDKSII+W L K+EKTYGVA RRLT
Sbjct: 1   MAERLILLGTMRAHTDQVTAIATPIDNSDMIVTASRDKSIILWKLIKDEKTYGVAHRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGVSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH +WVSCVRFSPNTLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHNDWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY+LDAGAVIHAL
Sbjct: 181 TNCKLRCTLAGHGGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYNLDAGAVIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATT-ATTTIKKKNIYCT 275
           CFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDLK EAEKS+ +T A+T  KKKNIYCT
Sbjct: 241 CFSPNRYWLCAATENSIKIWDLESKSIVEDLKVDLKAEAEKSDGSTVASTGAKKKNIYCT 300

Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           SL+W+ DGSTLFSGYTDGVIRVWGIGR+
Sbjct: 301 SLSWNADGSTLFSGYTDGVIRVWGIGRF 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121218|ref|XP_002318528.1| predicted protein [Populus trichocarpa] gi|222859201|gb|EEE96748.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/325 (82%), Positives = 287/325 (88%), Gaps = 24/325 (7%)

Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E L+L+GTMRAHTD VTAIATPIDN+DMIV+ASRDKSII+WHLTK+EKTYGVARRRLTGH
Sbjct: 4   ETLILRGTMRAHTDQVTAIATPIDNTDMIVSASRDKSIILWHLTKDEKTYGVARRRLTGH 63

Query: 63  SHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQIVS 98
           SHFVQDVVLSSDGQF                        VGHTKDVLSVAFS DNRQIVS
Sbjct: 64  SHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVSARRFVGHTKDVLSVAFSFDNRQIVS 123

Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158
           ASRD+TIKLWNTLGECKYTIQE ++HT+WVSCVRFSP+TLQPTIVSASWD+TVKVWNL+N
Sbjct: 124 ASRDKTIKLWNTLGECKYTIQEAESHTDWVSCVRFSPSTLQPTIVSASWDKTVKVWNLTN 183

Query: 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218
           CKLR+TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK+LYSLDAGAVI+ALCF
Sbjct: 184 CKLRSTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGAVINALCF 243

Query: 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN 278
           SPNRYWLCAATE SIKIWDLESK +V+DLKVDLK EAEKSE TTAT    KK IYCTSLN
Sbjct: 244 SPNRYWLCAATENSIKIWDLESKMVVDDLKVDLKAEAEKSEGTTATAVSTKKKIYCTSLN 303

Query: 279 WSVDGSTLFSGYTDGVIRVWGIGRY 303
           WS DGSTLFSGYTDGVIRVWG+GRY
Sbjct: 304 WSADGSTLFSGYTDGVIRVWGVGRY 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806172|ref|NP_001241455.1| uncharacterized protein LOC100778205 [Glycine max] gi|255645048|gb|ACU23023.1| unknown [Glycine max]

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/327 (83%), Positives = 288/327 (88%), Gaps = 26/327 (7%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           MA+ LVL+GTMRAHTD+VTAIATPIDNSDMIVTASRDKSII+WHLTKE+KTYGV RRRLT
Sbjct: 1   MADNLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLT 60

Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFVQDVVLSSDGQF                        VGHTKDVLSVAFSIDNRQI
Sbjct: 61  GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQI 120

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VSASRDRTIKLWNTLGECKYTIQ+GDAH++WVSCVRFSP+TLQPTIVSASWDRTVKVWNL
Sbjct: 121 VSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNL 180

Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHAL
Sbjct: 181 TNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHAL 240

Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS 276
           CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA+ +  T      KKK IYCTS
Sbjct: 241 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADAT--TGGGNPNKKKVIYCTS 298

Query: 277 LNWSVDGSTLFSGYTDGVIRVWGIGRY 303
           LNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct: 299 LNWSSDGSTLFSGYTDGVVRVWGIGRY 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2194060	327	ATARCA "AT1G18080" [Arabidopsi	0.759	0.703	0.823	2.8e-137
TAIR|locus:2008159	326	RACK1B_AT "AT1G48630" [Arabido	0.759	0.705	0.809	4e-136
TAIR|locus:2092707	326	RACK1C_AT "AT3G18130" [Arabido	0.749	0.696	0.811	1.7e-135
ZFIN|ZDB-GENE-990415-89	317	gnb2l1 "guanine nucleotide bin	0.702	0.671	0.675	2e-102
UNIPROTKB|O42249	317	gnb2l1 "Guanine nucleotide-bin	0.702	0.671	0.671	3.2e-102
UNIPROTKB|G8JL27	320	GNB2L1 "Guanine nucleotide-bin	0.702	0.665	0.657	1.1e-101
UNIPROTKB|P63247	317	GNB2L1 "Guanine nucleotide-bin	0.702	0.671	0.657	1.1e-101
UNIPROTKB|P63243	317	GNB2L1 "Guanine nucleotide-bin	0.702	0.671	0.657	1.1e-101
UNIPROTKB|F1PLR0	317	GNB2L1 "Uncharacterized protei	0.702	0.671	0.657	1.1e-101
UNIPROTKB|P63244	317	GNB2L1 "Guanine nucleotide-bin	0.702	0.671	0.657	1.1e-101

TAIR|locus:2194060 ATARCA "AT1G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1013 (361.7 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
 Identities = 191/232 (82%), Positives = 202/232 (87%)

Query:    73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCV 131
             S  +FVGHTKDVLSVAFS+DNRQIVSASRDRTIKLWNTLGECKYTI EG + H +WVSCV
Sbjct:    97 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV 156

Query:   132 RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191
             RFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDG
Sbjct:   157 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG 216

Query:   192 VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL 251
             V+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL
Sbjct:   217 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDL 276

Query:   252 XXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
                                 IYCTSLNWS DGSTLFSGYTDGVIRVWGIGRY
Sbjct:   277 KAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006417 "regulation of translation" evidence=IGI

GO:0009845 "seed germination" evidence=IGI

GO:0042254 "ribosome biogenesis" evidence=IGI

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010476 "gibberellin mediated signaling pathway" evidence=IMP

TAIR|locus:2008159 RACK1B_AT "AT1G48630" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 4.0e-136, Sum P(2) = 4.0e-136
 Identities = 187/231 (80%), Positives = 199/231 (86%)

Query:    73 SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVR 132
             S  +FVGHTKDVLSVAFS DNRQIVSASRDRTIKLWNTLGECKYTI E D H EWVSCVR
Sbjct:    97 STRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVR 156

Query:   133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
             FSPNTL PTIVSASWD+TVKVWNL NCKLR TLAGH+GY+NTVAVSPDGSLCASGGKDGV
Sbjct:   157 FSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGV 216

Query:   193 ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLX 252
             ILLWDLAEGK+LYSL+AG++IH+LCFSPNRYWLCAATE SI+IWDLESKS+VEDLKVDL 
Sbjct:   217 ILLWDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLK 276

Query:   253 XXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
                                IYCTSLNWS DG+TLFSGYTDGVIRVWGIGRY
Sbjct:   277 AEAEKTDGSTGIGNKTKV-IYCTSLNWSADGNTLFSGYTDGVIRVWGIGRY 326

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0048364 "root development" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006417 "regulation of translation" evidence=IGI

GO:0009845 "seed germination" evidence=IGI

GO:0042254 "ribosome biogenesis" evidence=IGI

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0001510 "RNA methylation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2092707 RACK1C_AT "AT3G18130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
 Identities = 185/228 (81%), Positives = 198/228 (86%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVSASRDRTIKLWNTLGECKYTI EGD H EWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSP 159

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             NTL PTIVSASWD+TVKVWNL NCKLR +L GH+GY+NTVAVSPDGSLCASGGKDGVILL
Sbjct:   160 NTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILL 219

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDLAEGK+LYSL+AG++IH+LCFSPNRYWLCAATE SI+IWDLESKS+VEDLKVDL    
Sbjct:   220 WDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKSEA 279

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
                             IYCTSLNWS DGSTLFSGYTDGV+RVWGIGRY
Sbjct:   280 EKNEGGVGTGNQKKV-IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 326

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0048364 "root development" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0009845 "seed germination" evidence=IGI

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-990415-89 gnb2l1 "guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1" [Danio rerio (taxid:7955)]

 Score = 803 (287.7 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 152/225 (67%), Positives = 171/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYTIQ+ D+HTEWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLGVCKYTIQD-DSHTEWVSCVRFSP 158

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   159 NSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD G  I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ D+    
Sbjct:   219 WDLNEGKHLYTLDGGDTINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQDIITTN 278

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD +IRVW +
Sbjct:   279 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLIRVWQV 312

GO:0001525 "angiogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:2000114 "regulation of establishment of cell polarity" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

GO:2000543 "positive regulation of gastrulation" evidence=IMP

UNIPROTKB|O42249 gnb2l1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Oreochromis niloticus (taxid:8128)]

 Score = 798 (286.0 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 151/225 (67%), Positives = 172/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYTIQ+ + HTEWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLGVCKYTIQD-EGHTEWVSCVRFSP 158

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   159 NSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD+G VI+ALCFSPNRYWLCAAT  SIKIWDLE K IV++L+ ++    
Sbjct:   219 WDLNEGKHLYTLDSGDVINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTN 278

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD +IRVW +
Sbjct:   279 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLIRVWQV 312

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

UNIPROTKB|G8JL27 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Gallus gallus (taxid:9031)]

 Score = 794 (284.6 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 148/225 (65%), Positives = 172/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSP
Sbjct:   103 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSP 161

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   162 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 221

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++    
Sbjct:   222 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 281

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD ++RVW +
Sbjct:   282 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLVRVWQV 315

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050765 "negative regulation of phagocytosis" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|P63247 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Gallus gallus (taxid:9031)]

 Score = 794 (284.6 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 148/225 (65%), Positives = 172/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSP 158

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++    
Sbjct:   219 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD ++RVW +
Sbjct:   279 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLVRVWQV 312

GO:0007165 "signal transduction" evidence=TAS

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050765 "negative regulation of phagocytosis" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

UNIPROTKB|P63243 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Bos taurus (taxid:9913)]

 Score = 794 (284.6 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 148/225 (65%), Positives = 172/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSP 158

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++    
Sbjct:   219 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD ++RVW +
Sbjct:   279 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLVRVWQV 312

GO:0030971 "receptor tyrosine kinase binding" evidence=ISS

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=ISS

GO:0050765 "negative regulation of phagocytosis" evidence=ISS

GO:0043547 "positive regulation of GTPase activity" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0001891 "phagocytic cup" evidence=ISS

GO:0042169 "SH2 domain binding" evidence=ISS

GO:0005080 "protein kinase C binding" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0032464 "positive regulation of protein homooligomerization" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0043204 "perikaryon" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

UNIPROTKB|F1PLR0 GNB2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 794 (284.6 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 148/225 (65%), Positives = 172/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSP 158

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++    
Sbjct:   219 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD ++RVW +
Sbjct:   279 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLVRVWQV 312

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0050765 "negative regulation of phagocytosis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

UNIPROTKB|P63244 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Homo sapiens (taxid:9606)]

 Score = 794 (284.6 bits), Expect = 1.1e-101, Sum P(2) = 1.1e-101
 Identities = 148/225 (65%), Positives = 172/225 (76%)

Query:    76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
             +FVGHTKDVLSVAFS DNRQIVS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSP
Sbjct:   100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSP 158

Query:   136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
             N+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +L
Sbjct:   159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218

Query:   196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXX 255
             WDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++    
Sbjct:   219 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278

Query:   256 XXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               CTSL WS DG TLF+GYTD ++RVW +
Sbjct:   279 SKAEPPQ-----------CTSLAWSADGQTLFAGYTDNLVRVWQV 312

GO:0007049 "cell cycle" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0090003 "regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0043204 "perikaryon" evidence=IEA

GO:0005102 "receptor binding" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0030496 "midbody" evidence=IDA

GO:0043025 "neuronal cell body" evidence=ISS

GO:0042169 "SH2 domain binding" evidence=IDA

GO:0030971 "receptor tyrosine kinase binding" evidence=IDA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=IDA

GO:0051726 "regulation of cell cycle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP;IDA

GO:0030335 "positive regulation of cell migration" evidence=IDA

GO:0043547 "positive regulation of GTPase activity" evidence=IDA

GO:0001891 "phagocytic cup" evidence=IDA

GO:0050765 "negative regulation of phagocytosis" evidence=IMP

GO:0008200 "ion channel inhibitor activity" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IMP

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93134	GBLP_BIOGL	No assigned EC number	0.5938	0.9438	0.9050	N/A	no
O42249	GBLP_ORENI	No assigned EC number	0.6049	0.9504	0.9085	yes	no
O42248	GBLP_DANRE	No assigned EC number	0.6080	0.9504	0.9085	yes	no
P49027	GBLPA_ORYSJ	No assigned EC number	0.6568	0.9504	0.8622	yes	no
P49026	GBLP_TOBAC	No assigned EC number	0.7630	0.9867	0.9171	N/A	no
Q4R7Y4	GBLP_MACFA	No assigned EC number	0.5956	0.9504	0.9085	N/A	no
O18640	GBLP_DROME	No assigned EC number	0.5692	0.9504	0.9056	yes	no
P46800	GBLP_DICDI	No assigned EC number	0.5142	0.9405	0.8662	yes	no
Q21215	GBLP_CAEEL	No assigned EC number	0.5319	0.9537	0.8892	yes	no
Q39836	GBLP_SOYBN	No assigned EC number	0.8318	0.9933	0.9261	yes	no
Q10281	GBLP_SCHPO	No assigned EC number	0.5276	0.9570	0.9235	yes	no
O24076	GBLP_MEDSA	No assigned EC number	0.8409	0.9933	0.9261	N/A	no
O24456	GBLPA_ARATH	No assigned EC number	0.8048	0.9966	0.9235	yes	no
P38011	GBLP_YEAST	No assigned EC number	0.4079	0.9339	0.8871	yes	no
Q39336	GBLP_BRANA	No assigned EC number	0.8018	0.9966	0.9235	N/A	no
Q9LV28	GPLPC_ARATH	No assigned EC number	0.7951	0.9966	0.9263	no	no
P93340	GBLP_NICPL	No assigned EC number	0.7661	0.9867	0.9171	N/A	no
Q01369	GBLP_NEUCR	No assigned EC number	0.5709	0.9504	0.9113	N/A	no
P63243	GBLP_BOVIN	No assigned EC number	0.5956	0.9504	0.9085	yes	no
P62884	GBLP_LEIIN	No assigned EC number	0.4210	0.9075	0.8814	yes	no
P25387	GBLP_CHLRE	No assigned EC number	0.6452	0.9603	0.9150	N/A	no
P63247	GBLP_CHICK	No assigned EC number	0.5956	0.9504	0.9085	yes	no
P63246	GBLP_PIG	No assigned EC number	0.5956	0.9504	0.9085	yes	no
P63245	GBLP_RAT	No assigned EC number	0.5956	0.9504	0.9085	yes	no
P63244	GBLP_HUMAN	No assigned EC number	0.5956	0.9504	0.9085	yes	no
Q9C4Z6	GPLPB_ARATH	No assigned EC number	0.7951	0.9966	0.9263	no	no
P68040	GBLP_MOUSE	No assigned EC number	0.5956	0.9504	0.9085	yes	no
Q25306	GBLP_LEIMA	No assigned EC number	0.4210	0.9075	0.8814	yes	no
Q25189	GBLP_HYDVU	No assigned EC number	0.5969	0.9504	0.9085	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XII0164	hypothetical protein (328 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•	•				0.702
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•	•				0.699
	estExt_fgenesh4_pg.C_LG_X1707	RecName- Full=60S acidic ribosomal protein P0; (321 aa)				•			•		0.622
	estExt_fgenesh4_pm.C_LG_VIII0253	RecName- Full=60S acidic ribosomal protein P0; (323 aa)				•					0.618
	eugene3.00190574	SubName- Full=Putative uncharacterized protein; (132 aa)				•	•				0.604
	estExt_Genewise1_v1.C_LG_XIII3119	SubName- Full=Putative uncharacterized protein; (131 aa)				•	•				0.603
	eugene3.00011799	RecName- Full=60S ribosomal protein L6; (232 aa)				•					0.534
	grail3.0040004901	SubName- Full=Putative uncharacterized protein; (159 aa)				•	•				0.531
	estExt_fgenesh4_kg.C_LG_II0054	SubName- Full=Putative uncharacterized protein; (159 aa)				•	•				0.530
	estExt_fgenesh4_pg.C_LG_IX0938	RecName- Full=60S ribosomal protein L6; (232 aa)				•					0.522

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-70
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-42
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-24
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  218 bits (557), Expect = 5e-70
 Identities = 117/319 (36%), Positives = 160/319 (50%), Gaps = 58/319 (18%)

Query: 7   LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
           L+ T++ HT  VT +A    +  ++ T S D +I VW L   E       R L GH+  V
Sbjct: 1   LRRTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGELL-----RTLKGHTGPV 54

Query: 67  QDVVLSSDGQ------------------------FVGHTKDVLSVAFSIDNRQIVSASRD 102
           +DV  S+DG                           GHT  V SVAFS D R + S+SRD
Sbjct: 55  RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 103 RTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161
           +TIK+W+   G+C  T++    HT+WV+ V FSP+     + S+S D T+K+W+L   K 
Sbjct: 115 KTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKC 169

Query: 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSP 220
            ATL GHTG VN+VA SPDG    S   DG I LWDL+ GK L +L      ++++ FSP
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229

Query: 221 NRYWLCAATE-QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW 279
           + Y L + +E  +I++WDL +   V                     T+       TSL W
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECV--------------------QTLSGHTNSVTSLAW 269

Query: 280 SVDGSTLFSGYTDGVIRVW 298
           S DG  L SG  DG IR+W
Sbjct: 270 SPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  146 bits (371), Expect = 4e-42
 Identities = 75/213 (35%), Positives = 109/213 (51%), Gaps = 36/213 (16%)

Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
           T+  HT  V+++A    +  ++ ++SRDK+I VW +   +         L GH+ +V  V
Sbjct: 88  TLTGHTSYVSSVA-FSPDGRILSSSSRDKTIKVWDVETGKCLT-----TLRGHTDWVNSV 141

Query: 70  VLSSDGQFV------------------------GHTKDVLSVAFSIDNRQIVSASRDRTI 105
             S DG FV                        GHT +V SVAFS D  +++S+S D TI
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 106 KLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT 164
           KLW+   G+C  T++    H   V+ V FSP+     + S S D T++VW+L   +   T
Sbjct: 202 KLWDLSTGKCLGTLR---GHENGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGECVQT 256

Query: 165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
           L+GHT  V ++A SPDG   ASG  DG I +WD
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  108 bits (270), Expect = 1e-26
 Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 50/295 (16%)

Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
           T+  HTD V+++A   D   +I + S D +I +W L+  +                    
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST--------------- 237

Query: 70  VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS 129
                    GH+  V+S +FS D   + S S D TI+LW+ L      ++    H+  V 
Sbjct: 238 -------LSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWD-LRSSSSLLRTLSGHSSSVL 288

Query: 130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASG 187
            V FSP+     + S S D TV++W+L   KL +  TL GH G V++++ SPDGSL  SG
Sbjct: 289 SVAFSPDG--KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 188 G-KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVE 245
           G  DG I LWDL  GK L +L+  + + ++ FSP+   +   +T+ ++++WDL + S++ 
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL- 405

Query: 246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                                +       TSL++S DG +L SG +D  IR+W +
Sbjct: 406 -------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  101 bits (251), Expect = 4e-24
 Identities = 93/297 (31%), Positives = 137/297 (46%), Gaps = 49/297 (16%)

Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
              +R H D +T+IA   D    +++ S D +I +W L   EK        L G      
Sbjct: 58  SLLLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS----LEGL----- 107

Query: 68  DVVLSSDGQFVGHTKDVLSVAF-SIDNRQIVSA--SRDRTIKLWNTLGECKYTIQEGDAH 124
                       H   V  +A  S D   I+ A  S D T+KLW+     K  I+  + H
Sbjct: 108 ------------HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-LIRTLEGH 154

Query: 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-L 183
           +E V+ + FSP+        +S D T+K+W+L   K  +TLAGHT  V+++A SPDG  L
Sbjct: 155 SESVTSLAFSPDGKLL-ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213

Query: 184 CASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPN-RYWLCAATEQSIKIWDLESK 241
            ASG  DG I LWDL+ GK L S  +G +      FSP+       +++ +I++WDL S 
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273

Query: 242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
           S +                     T+   +    S+ +S DG  L SG +DG +R+W
Sbjct: 274 SSL-------------------LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  101 bits (251), Expect = 5e-24
 Identities = 79/243 (32%), Positives = 115/243 (47%), Gaps = 26/243 (10%)

Query: 62  HSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG 121
            S  +  +   S     GH   + S+AFS D   ++S S D TIKLW+     K      
Sbjct: 46  LSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE 105

Query: 122 DAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNC-KLRATLAGHTGYVNTVAVSP 179
             H   VS +  S       ++++S  D TVK+W+LS   KL  TL GH+  V ++A SP
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 180 DGSLCASGG-KDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYW--LCAATEQSIKI 235
           DG L ASG   DG I LWDL  GK L +L      + +L FSP+        +++ +I++
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Query: 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI 295
           WDL +  ++                    +T+   +    S  +S DGS L SG +DG I
Sbjct: 226 WDLSTGKLL-------------------RSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265

Query: 296 RVW 298
           R+W
Sbjct: 266 RLW 268

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 23/38 (60%), Positives = 25/38 (65%)

Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
           +L  TL GHTG V +VA SPDG   ASG  DG I LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query: 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
            KL  TL GHTG V +VA SPDG+L ASG  DG + +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 25/190 (13%)

Query: 78  VGHTKDVLSVAFS-IDNRQIVSASRDRTIKLWNTLGE-----CKYTIQEGDAHTEWVSCV 131
           +G    ++ VAF+  D +++ +AS D TI  W    E         I     HT+ V  V
Sbjct: 72  LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV 131

Query: 132 RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG 191
            F P+ +   + SA  D  V VW++   K    +  H+  + ++  + DGSL  +  KD 
Sbjct: 132 SFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190

Query: 192 VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL----------CAATEQ-SIKIWD--- 237
            + + D  +G  + S++A    HA   S    W           C+ ++Q  I +WD   
Sbjct: 191 KLNIIDPRDGTIVSSVEA----HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246

Query: 238 LESKSIVEDL 247
           + S     DL
Sbjct: 247 MASPYSTVDL 256

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 109
             GHT  V SVAFS D   + S S D T+++W+
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 109
             GHT  V SVAFS D + + S S D TIKLW+
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 112 GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155
           G+   T++    HT  V+ V FSP+     + S S D TV+VW+
Sbjct: 1   GKLLRTLK---GHTGPVTSVAFSPD--GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 112 GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN 155
           GE   T++    HT  V+ V FSP+     + S S D T+K+W+
Sbjct: 2   GELLKTLK---GHTGPVTSVAFSPD--GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 35/235 (14%)

Query: 75  GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAH---TEWVSC 130
           G  +  +  V ++ F  D     +A  ++ IK++    EC+  I++G D H    E  S 
Sbjct: 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIF----ECESIIKDGRDIHYPVVELASR 532

Query: 131 VRFSP----NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCA 185
            + S     + ++  + S++++  V+VW+++  +L   +  H   V ++  S  D +L A
Sbjct: 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLA 592

Query: 186 SGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN--RYWLCAATEQSIKIWDLESKSI 243
           SG  DG + LW + +G  + ++   A I  + F     R     + +  +  +DL +   
Sbjct: 593 SGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-- 650

Query: 244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
               K+ L T    S+  +                  VD STL S  TD  +++W
Sbjct: 651 ----KLPLCTMIGHSKTVSYVRF--------------VDSSTLVSSSTDNTLKLW 687

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0296	399	consensus Angio-associated migratory cell protein	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
KOG4328	498	consensus WD40 protein [Function unknown]	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.78
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1273	405	consensus WD40 repeat protein [General function pr	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.65
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG1188	376	consensus WD40 repeat protein [General function pr	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.62
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG1334	559	consensus WD40 repeat protein [General function pr	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.55
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.54
KOG1963	792	consensus WD40 repeat protein [General function pr	99.53
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.53
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.53
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
KOG2139	445	consensus WD40 repeat protein [General function pr	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.47
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.47
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.38
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.38
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.36
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
PRK03629	429	tolB translocation protein TolB; Provisional	99.34
PRK05137	435	tolB translocation protein TolB; Provisional	99.33
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
KOG1334	559	consensus WD40 repeat protein [General function pr	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.28
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.27
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.18
KOG2315	566	consensus Predicted translation initiation factor	99.18
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.14
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.13
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.09
KOG2315	566	consensus Predicted translation initiation factor	99.09
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.08
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
PRK00178	430	tolB translocation protein TolB; Provisional	99.02
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.0
COG4946	668	Uncharacterized protein related to the periplasmic	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
PRK04792	448	tolB translocation protein TolB; Provisional	98.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.93
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.91
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.91
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.91
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.9
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.89
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.87
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.87
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.86
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.85
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.84
COG4946	668	Uncharacterized protein related to the periplasmic	98.8
KOG2314	698	consensus Translation initiation factor 3, subunit	98.8
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.76
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.76
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.75
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.75
PRK04043	419	tolB translocation protein TolB; Provisional	98.75
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.68
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.65
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.65
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.6
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.59
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.57
PRK04043	419	tolB translocation protein TolB; Provisional	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.52
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.46
KOG2695	425	consensus WD40 repeat protein [General function pr	98.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.42
KOG2695	425	consensus WD40 repeat protein [General function pr	98.42
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.37
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.37
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.35
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.29
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.23
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.16
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.03
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.02
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.99
KOG2314	698	consensus Translation initiation factor 3, subunit	97.93
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.9
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.81
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.79
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.77
PRK02888	635	nitrous-oxide reductase; Validated	97.72
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.68
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.65
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.63
KOG3621	726	consensus WD40 repeat-containing protein [General	97.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.58
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.51
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.43
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.33
KOG3621	726	consensus WD40 repeat-containing protein [General	97.32
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.27
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.97
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.95
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.9
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.9
COG3391	381	Uncharacterized conserved protein [Function unknow	96.81
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.62
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.61
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.5
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.48
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.45
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.44
PRK13616	591	lipoprotein LpqB; Provisional	96.37
KOG2444	238	consensus WD40 repeat protein [General function pr	96.36
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.36
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.22
KOG2395	644	consensus Protein involved in vacuole import and d	96.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.01
KOG2444	238	consensus WD40 repeat protein [General function pr	96.0
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.95
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.94
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.9
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.78
PRK13616	591	lipoprotein LpqB; Provisional	95.74
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.59
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.58
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.37
PHA02713	557	hypothetical protein; Provisional	95.36
COG3391	381	Uncharacterized conserved protein [Function unknow	95.32
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.29
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.01
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.78
KOG2395	644	consensus Protein involved in vacuole import and d	94.77
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.64
PHA02713	557	hypothetical protein; Provisional	94.5
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.36
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.19
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.05
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.96
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.88
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.2
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.95
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.79
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.7
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.61
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.4
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.36
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.02
PHA03098	534	kelch-like protein; Provisional	91.86
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.09
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.87
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.31
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.9
PRK13684	334	Ycf48-like protein; Provisional	89.82
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.43
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.4
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.14
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.08
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.9
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.8
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.77
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.97
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.84
KOG2247	615	consensus WD40 repeat-containing protein [General	87.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.02
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.49
PRK10115	686	protease 2; Provisional	86.28
PF14727	418	PHTB1_N: PTHB1 N-terminus	85.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	85.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.99
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.88
PHA03098	534	kelch-like protein; Provisional	84.78
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	84.58
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.48
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.23
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	83.26
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	82.84
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	81.35
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.16
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	80.95
COG5167	776	VID27 Protein involved in vacuole import and degra	80.8
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.28

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-54  Score=330.16  Aligned_cols=291  Identities=71%  Similarity=1.180  Sum_probs=269.8

Q ss_pred             CccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc----
Q 048118            1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ----   76 (303)
Q Consensus         1 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----   76 (303)
                      |++++.++++|++|++-|+.++..+.+.+.+++++.|.++.+|++...+..++.+.+.+.+|+++|+.+.++++++    
T Consensus         1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS   80 (315)
T KOG0279|consen    1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS   80 (315)
T ss_pred             CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence            8899999999999999999999999889999999999999999999888889999999999999999999998874    


Q ss_pred             --------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118           77 --------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        77 --------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~  136 (303)
                                          |.+|+..|.+++|+++.+++++|+.|++|++|+..+.+++.+... .+.++|.|++|+|+
T Consensus        81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~-~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED-SHREWVSCVRFSPN  159 (315)
T ss_pred             ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC-CCcCcEEEEEEcCC
Confidence                                459999999999999999999999999999999999988877643 34889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEE
Q 048118          137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL  216 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~  216 (303)
                      ...+.++++++|++|++||+++.+....+.+|++.++.+.+||||.++++|+.||.+.+||++.++.++++.....|.++
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl  239 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL  239 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       217 ~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      +|+|+.++|+.+.+..|+|||++++..+.+++.+....           ..+.....+.+++|++||..|+.|..||.|+
T Consensus       240 ~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-----------s~~~~~~~clslaws~dG~tLf~g~td~~ir  308 (315)
T KOG0279|consen  240 CFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-----------SSKAGDPICLSLAWSADGQTLFAGYTDNVIR  308 (315)
T ss_pred             EecCCceeEeeccCCceEEEeccchhhhhhcccccccc-----------ccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence            99999999999999999999999999998887654322           2344567889999999999999999999999


Q ss_pred             EEecccC
Q 048118          297 VWGIGRY  303 (303)
Q Consensus       297 ~w~~~~~  303 (303)
                      +|.+..|
T Consensus       309 v~qv~~~  315 (315)
T KOG0279|consen  309 VWQVAKS  315 (315)
T ss_pred             EEEeecC
Confidence            9999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-42  Score=279.34  Aligned_cols=249  Identities=27%  Similarity=0.438  Sum_probs=217.9

Q ss_pred             ceeecccccccccceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118            4 GLVLKGTMRAHTDMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      +..++.+|++|...|.++.|+|. ...-+|||+.||++++|+.......                       .++.+|..
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-----------------------~~l~gH~~  262 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-----------------------QDLEGHLA  262 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch-----------------------hhhhcchh
Confidence            44677789999999999999997 4568999999999999998653221                       25678999


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      +|..++|+|+|++|+|++.|.+.++||+.....  ...+++|...|.+++|+|++  ..+++|+.|..-++||++++.++
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~i  338 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQPDG--SLAATGGLDSLGRVWDLRTGRCI  338 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccceeEecCCC--ceeeccCccchhheeecccCcEE
Confidence            999999999999999999999999999865432  34457899999999999997  57899999999999999999999


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcC-CCeEEE-EEcCCcEEEEeCC
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSP-NRYWLC-AATEQSIKIWDLE  239 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~-~~~~l~-~~~~~~i~iwd~~  239 (303)
                      ..+.+|..+|.++.|+|+|.+|||||.|++++|||++....+++++. ...|..+.|+| .|++|+ ++.|+.+++|..+
T Consensus       339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence            99999999999999999999999999999999999999988988864 57899999999 466665 5569999999998


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      +...++.                    +.+|..-|.+++.+|++.++++++.|+++++|.
T Consensus       419 ~~~~~ks--------------------LaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  419 TWSPLKS--------------------LAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             Ccccchh--------------------hcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            8876654                    456777789999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-40  Score=263.21  Aligned_cols=259  Identities=31%  Similarity=0.525  Sum_probs=213.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------   76 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------   76 (303)
                      .+.||.++|.++.|+|++ ..+||||.|.++||||+....     +.....+|.++|.++.|+|+++             
T Consensus       110 S~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             ccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            588999999999999965 689999999999999997543     3455678999999999999874             


Q ss_pred             ------------eecccCCEEEEEEee-----CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCC
Q 048118           77 ------------FVGHTKDVLSVAFSI-----DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ  139 (303)
Q Consensus        77 ------------~~~h~~~i~~i~~~~-----~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  139 (303)
                                  +.+|+.-|++++|.|     ..++|++++.||.|+|||+....-  +....+|+.+|+|++|.-+   
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~--~~~lsgHT~~VTCvrwGG~---  258 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--VRTLSGHTASVTCVRWGGE---  258 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--EEEeccCccceEEEEEcCC---
Confidence                        458999999999986     456899999999999999864322  2223579999999999754   


Q ss_pred             CEEEEEeCCCcEEEEECCCce-----------------------------------------------------------
Q 048118          140 PTIVSASWDRTVKVWNLSNCK-----------------------------------------------------------  160 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~~~-----------------------------------------------------------  160 (303)
                      .++.+|+.|++|++|+...++                                                           
T Consensus       259 gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  259 GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence            378888999999999753221                                                           


Q ss_pred             --------------------eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEc
Q 048118          161 --------------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFS  219 (303)
Q Consensus       161 --------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s  219 (303)
                                          ++..+.+|..-|+.+.||||++++|++|.|..|++||.++|+.+.++. +-..|++++|+
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws  418 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS  418 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence                                111234788889999999999999999999999999999999988886 45789999999


Q ss_pred             CCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          220 PNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       220 ~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      .|..+|++ +.|..+++|++++.++..++                    .+|.-.+..++|+|||..+++|+.|..+++|
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DL--------------------pGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDL--------------------PGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeeeecccC--------------------CCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            99766655 56899999999998776543                    3444556789999999999999999999999


Q ss_pred             e
Q 048118          299 G  299 (303)
Q Consensus       299 ~  299 (303)
                      .
T Consensus       479 ~  479 (480)
T KOG0271|consen  479 R  479 (480)
T ss_pred             c
Confidence            4

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=239.11  Aligned_cols=265  Identities=26%  Similarity=0.399  Sum_probs=222.5

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------   76 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------   76 (303)
                      +...++|++|...|+++.|+++. ++++++|.||.+.|||.....|..     -.+..+.+|-..+++|.++        
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~h-----aipl~s~WVMtCA~sPSg~~VAcGGLd  118 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVH-----AIPLPSSWVMTCAYSPSGNFVACGGLD  118 (343)
T ss_pred             eeeEEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEccccccee-----EEecCceeEEEEEECCCCCeEEecCcC
Confidence            44567899999999999999875 689999999999999986544432     2333456666667777653        


Q ss_pred             ----------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc
Q 048118           77 ----------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS  134 (303)
Q Consensus        77 ----------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~  134 (303)
                                            +.+|++-+.++.|-++ .+|+|++.|.++-+||++....  +....+|...|.++.++
T Consensus       119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~--~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ--TQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             ceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE--EEEecCCcccEEEEecC
Confidence                                  4589999999999885 4788999999999999966443  34456899999999999


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC---C
Q 048118          135 PNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG---A  211 (303)
Q Consensus       135 ~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~  211 (303)
                      |.. .+.+++|+.|++.++||++.+.++++|.+|...|++++|.|+|.-|++|++|+++++||++..+.+..+...   .
T Consensus       196 p~~-~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  196 PSD-GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             CCC-CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            953 468999999999999999999999999999999999999999999999999999999999999988877643   5


Q ss_pred             eEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          212 VIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       212 ~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      .|++++||..|.+|. +..|..+.+||.-.++.+..                    +.+|...+.++..+|||..|+|||
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--------------------L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--------------------LAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEE--------------------eeccCCeeEEEEECCCCcEEEecc
Confidence            799999999987664 56789999999876665543                    346777889999999999999999


Q ss_pred             cCCeEEEEe
Q 048118          291 TDGVIRVWG  299 (303)
Q Consensus       291 ~Dg~v~~w~  299 (303)
                      .|-++|+|.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-36  Score=228.05  Aligned_cols=279  Identities=22%  Similarity=0.364  Sum_probs=216.9

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-----
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-----   77 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----   77 (303)
                      ++|.+++.+.+|++.+..++|+|..+..|||||.|..||+|+... ............+|...|+.++++|.+++     
T Consensus         2 ~~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen    2 DRLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             ccceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence            447888899999999999999997556899999999999999874 22222222233468888999999998764     


Q ss_pred             ---------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcC
Q 048118           78 ---------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSP  135 (303)
Q Consensus        78 ---------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~  135 (303)
                                           .||..+|-+++|+++|.+||||+.|++|-+|...... .........|+..|..+.|||
T Consensus        81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence                                 3899999999999999999999999999999875332 223334457888899999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECC---CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe
Q 048118          136 NTLQPTIVSASWDRTVKVWNLS---NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV  212 (303)
Q Consensus       136 ~~~~~~~~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  212 (303)
                      ..  ..|++++.|.+|++|+-.   +..+..++.+|.+.|.+++|+|.|..|++++.|++++||-..+.-   .......
T Consensus       161 t~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~  235 (312)
T KOG0645|consen  161 TE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRA  235 (312)
T ss_pred             Cc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccc
Confidence            63  579999999999999765   346889999999999999999999999999999999999765321   1122456


Q ss_pred             EEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEeec
Q 048118          213 IHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGYT  291 (303)
Q Consensus       213 v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs~  291 (303)
                      ++.++|. ++.+..++.|+.|++|.-...-.-..++.             ....-..|..-++++.|.|. ...|++|+.
T Consensus       236 ~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-------------~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D  301 (312)
T KOG0645|consen  236 LYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNL-------------LAKKEGAHEVDVNSVQWNPKVSNRLASGGD  301 (312)
T ss_pred             eEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHH-------------HHhhhcccccccceEEEcCCCCCceeecCC
Confidence            8889998 77777788899999997542100000100             01112345667899999995 679999999


Q ss_pred             CCeEEEEecc
Q 048118          292 DGVIRVWGIG  301 (303)
Q Consensus       292 Dg~v~~w~~~  301 (303)
                      ||.|++|.+.
T Consensus       302 DG~v~~W~l~  311 (312)
T KOG0645|consen  302 DGIVNFWELE  311 (312)
T ss_pred             CceEEEEEec
Confidence            9999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-37  Score=250.09  Aligned_cols=247  Identities=28%  Similarity=0.460  Sum_probs=206.6

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .+...=-+-..+|....|++++ ..|||||-+|.+++|+.......                       ..+.+|++.|.
T Consensus       166 ~l~~SQ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~-----------------------~~l~gH~~~v~  221 (459)
T KOG0272|consen  166 ELVCSQVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLL-----------------------QTLRGHTSRVG  221 (459)
T ss_pred             hhhhhhccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCccee-----------------------EEEecccccee
Confidence            3333344556788899999764 68999999999999987643211                       14678999999


Q ss_pred             EEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           86 SVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        86 ~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      ++.|+|.  +..+|||+.||++++|++..+.  .+.....|...|..++|||++  .++++++.|.+-++||+.+++...
T Consensus       222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL  297 (459)
T KOG0272|consen  222 AAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELL  297 (459)
T ss_pred             eEEEccCCCccceeeeccCCceeeeccCCCc--chhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhH
Confidence            9999997  5689999999999999987643  234446788889999999997  479999999999999999988777


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCC
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSIKIWDLESK  241 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~  241 (303)
                      ...+|...|.+++|+|||.++++|+.|..-+|||++++.++-.+.. ...|.+++|+|+|+.+|++ .|+.++|||++..
T Consensus       298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r  377 (459)
T KOG0272|consen  298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR  377 (459)
T ss_pred             hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence            7789999999999999999999999999999999999999877754 5689999999999888765 6999999999987


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEEEEec
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +.+.                    .+..|...|+.+.|+| .|.+|+|+|.|+++++|.-
T Consensus       378 ~~ly--------------------~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  378 SELY--------------------TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             ccce--------------------ecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            6543                    2445666678899999 5779999999999999964

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2e-35  Score=222.69  Aligned_cols=246  Identities=24%  Similarity=0.472  Sum_probs=200.9

Q ss_pred             CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------------------eeccc
Q 048118           27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------------------FVGHT   81 (303)
Q Consensus        27 ~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------~~~h~   81 (303)
                      .+-+|+|+|.|.+||||....     |.+.+..++...-|+.+.+.|+++                         |.+|+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~t-----G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALT-----GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             CceEEEeccCcceeeeeehhc-----CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence            456899999999999998753     677888888888888888888763                         45899


Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ..|..+.|..+|++++||++||++||||.+..   ..+..-.+..+|+++..+|+.  ..+++|..+|.|++||+....+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCc---ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEccCCcc
Confidence            99999999999999999999999999998652   222223467889999999985  5799999999999999988766


Q ss_pred             EEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce------EEEec-CCCeEEEEEEcCCCeEEEE-EcCCc
Q 048118          162 RATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR------LYSLD-AGAVIHALCFSPNRYWLCA-ATEQS  232 (303)
Q Consensus       162 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~  232 (303)
                      ...+. .-..+|.++.+.|+|.+++.+...|++++|++...+.      +.+++ ....+..+.+||++++|++ ++|..
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence            55543 3346799999999999999999999999999976542      23333 2456888899999877765 56899


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++||+.++- +..+                  ..++++..++++.+||.|+.||+||++|+.+|+|++.
T Consensus       239 v~iwn~~~~-~kle------------------~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  239 VKIWNTDDF-FKLE------------------LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEEecCCc-eeeE------------------EEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            999999876 2222                  2345677899999999999999999999999999984

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.1e-36  Score=258.31  Aligned_cols=262  Identities=29%  Similarity=0.438  Sum_probs=209.2

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcc--ccce-eeeeecCCCcceEEEEeCC-----CCceecccCCEEE
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEK--TYGV-ARRRLTGHSHFVQDVVLSS-----DGQFVGHTKDVLS   86 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~--~~~~-~~~~~~~~~~~i~~~~~~~-----~~~~~~h~~~i~~   86 (303)
                      ...++|..|++++ .++|-|-.|..|++|.+.+...  .... ......--+.-+..-....     ...+.||+++|+.
T Consensus       378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            3568899999776 4899999999999999874210  0000 0000000000000000111     1237799999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      +.|+|+.++|++|+.|+++|+|.+....-  .....+|..+|..+.|+|.+  .+|++++.|++-++|.....++.+.+.
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             eeecccccceeeccCCcceeeeeccccee--EEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence            99999999999999999999999865433  23335899999999999986  589999999999999998888899999


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV  244 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~  244 (303)
                      +|.+.|.|+.|+|+..++++||.|++||+||+.+|..++.+. +..+|.+++|||.|.+|+++ .|+.|.+||+.+++++
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            999999999999999999999999999999999999988875 46799999999999888765 5899999999999887


Q ss_pred             eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..+.                    +|...+.++.||.+|..||+|+.|..|++||+-
T Consensus       613 ~~l~--------------------~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  613 KQLK--------------------GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             hhhh--------------------cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            6544                    334456889999999999999999999999973

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5e-35  Score=251.68  Aligned_cols=255  Identities=28%  Similarity=0.454  Sum_probs=197.2

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ...++.||.++|+..+|+|++ ++|++||.|+++|+|.+....                  +++     .|.||..+|+.
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s------------------~~V-----~y~GH~~PVwd  498 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS------------------CLV-----IYKGHLAPVWD  498 (707)
T ss_pred             eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccce------------------eEE-----EecCCCcceee
Confidence            344689999999999999985 799999999999999875321                  111     36789999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      +.|+|-|-+|||++.|++.++|....  ........+|...+.|++|||+.  .++++|+.|.++|+||..++..++.|.
T Consensus       499 V~F~P~GyYFatas~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~  574 (707)
T KOG0263|consen  499 VQFAPRGYYFATASHDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFT  574 (707)
T ss_pred             EEecCCceEEEecCCCceeeeeeccc--CCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEec
Confidence            99999999999999999999998643  22333345788889999999996  689999999999999999999999999


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV  244 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~  244 (303)
                      +|.++|++++|||+|++|++|+.||.|++||+..+..+..+ .+...+.++.|+.+|.+|+++ .|++|++||+......
T Consensus       575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999999999999999999999999999998887765 457889999999999877765 6899999998643222


Q ss_pred             eee-eeccc--cccccc-cCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          245 EDL-KVDLK--TEAEKS-EATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       245 ~~~-~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      ..+ .+...  ...... ........+..+...+..+.|...+-.|++|
T Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  655 LNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            000 00000  000001 1111223344445566778887666555555

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.2e-35  Score=233.12  Aligned_cols=260  Identities=22%  Similarity=0.338  Sum_probs=212.1

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee--------------
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV--------------   78 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------------   78 (303)
                      .-+..|+.|.|.|++ +.|+||+..|.+.+|+.....     ..-.+++|..+|+...+++++.+.              
T Consensus        94 Kvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fn-----FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFN-----FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             ccccceeeEEEcCCC-ceeEeecccccEEEecCceee-----HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence            334578999999986 579999999999999874321     122357899999999999887532              


Q ss_pred             ----------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118           79 ----------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD  148 (303)
Q Consensus        79 ----------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d  148 (303)
                                .|...|.+++|+|+...|+||+.|+.|+|||........+  ..+|.-.|.+++|||..  ..+++++.|
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~k--gLiasgskD  243 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPTK--GLIASGSKD  243 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCcc--ceeEEccCC
Confidence                      4558999999999999999999999999999753221111  14677789999999974  589999999


Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCC--CeEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPN--RYWL  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l  225 (303)
                      ..|++||.+++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++.+.++++. +...+.++.|+|-  +.+.
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft  323 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT  323 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence            999999999999999999999999999999999999999999999999999877777775 5678999999995  4455


Q ss_pred             EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          226 CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       226 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .++.||.|..|.+...+.+..+.                   ..|...+++++|+|-|..|++|+.|.++++|.-+
T Consensus       324 sgg~Dgsvvh~~v~~~~p~~~i~-------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  324 SGGSDGSVVHWVVGLEEPLGEIP-------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eccCCCceEEEeccccccccCCC-------------------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            66789999999986333222111                   2344567999999999999999999999999654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-33  Score=218.90  Aligned_cols=264  Identities=30%  Similarity=0.548  Sum_probs=224.6

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce--------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF--------   77 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------   77 (303)
                      .+...+.+|.-+|+.+-++|.. -.+++++.|.+|++||....+     ..+.+.+|...+.++.+...|++        
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~-----~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl  172 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGE-----LERSLRGHTDSVFDISFDASGKYLATCSSDL  172 (406)
T ss_pred             CchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchh-----hhhhhhccccceeEEEEecCccEEEecCCcc
Confidence            5566788999999999999875 588999999999999997643     24567788888888887766542        


Q ss_pred             -----------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC
Q 048118           78 -----------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP  140 (303)
Q Consensus        78 -----------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  140 (303)
                                       .+|...|.+++|-|.|.++++++.|.+|+.|+...  .+.+....+|.+++..++.+.++  .
T Consensus       173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DG--t  248 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDG--T  248 (406)
T ss_pred             chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCe--e
Confidence                             48999999999999999999999999999999854  23344446788999999998876  5


Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCC---------------CCEEEEEeCCCeEEEEeCCCCceEE
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD---------------GSLCASGGKDGVILLWDLAEGKRLY  205 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~v~iwd~~~~~~~~  205 (303)
                      .+++++.|..+++|-+.++++...+++|.-+|.+++|-|.               ++++.+++.|++|++||+.++.++.
T Consensus       249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence            7899999999999999999888999999999999998653               2589999999999999999999999


Q ss_pred             Eec-CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          206 SLD-AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       206 ~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                      ++. +...|+.++|+|.|+++++ +.|+++++||+++++.++.+.                    .+..++++++|+.+.
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------------ah~hfvt~lDfh~~~  388 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------------AHEHFVTSLDFHKTA  388 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------------------CCcceeEEEecCCCC
Confidence            985 5789999999999977765 568899999999987765443                    356788999999999


Q ss_pred             CEEEEeecCCeEEEEe
Q 048118          284 STLFSGYTDGVIRVWG  299 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~  299 (303)
                      ++++||+-|.++++|-
T Consensus       389 p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  389 PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceEEeccccceeeeee
Confidence            9999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.5e-33  Score=226.89  Aligned_cols=237  Identities=24%  Similarity=0.386  Sum_probs=193.7

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..|++++|+-+ +..||||+.||.+++|+....      ...                  .+..|+++|.++.|+..|.+
T Consensus       236 kdVT~L~Wn~~-G~~LatG~~~G~~riw~~~G~------l~~------------------tl~~HkgPI~slKWnk~G~y  290 (524)
T KOG0273|consen  236 KDVTSLDWNND-GTLLATGSEDGEARIWNKDGN------LIS------------------TLGQHKGPIFSLKWNKKGTY  290 (524)
T ss_pred             CCcceEEecCC-CCeEEEeecCcEEEEEecCch------hhh------------------hhhccCCceEEEEEcCCCCE
Confidence            57999999965 478999999999999987521      111                  24469999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV  175 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  175 (303)
                      +++++.|+++.+||......++.  ...|+.+-..+.|-.+   ..|++++.|+.|+++.+....+..++.+|.++|.++
T Consensus       291 ilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al  365 (524)
T KOG0273|consen  291 ILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL  365 (524)
T ss_pred             EEeccCCccEEEEeccCceEEEe--eeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence            99999999999999865544332  2345555455666544   369999999999999998888999999999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCC----------eEEEEEcCCcEEEEeCCCCcee
Q 048118          176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR----------YWLCAATEQSIKIWDLESKSIV  244 (303)
Q Consensus       176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~----------~~l~~~~~~~i~iwd~~~~~~~  244 (303)
                      .|+|.+.+|+++|.|++++||+.........+.. ...|+.+.|+|.+          .+++++.|+.+++||+..+..+
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i  445 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI  445 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence            9999999999999999999999877666555543 4578888898853          3456778999999999887654


Q ss_pred             eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .                    .+.+|...+.+++|||+|+++|+|+-||.|++|++..
T Consensus       446 ~--------------------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  446 H--------------------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             E--------------------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            3                    3556777889999999999999999999999998743

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-32  Score=232.02  Aligned_cols=265  Identities=26%  Similarity=0.441  Sum_probs=203.8

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +....+|-..+++++++|++ .++|||+.||.|++||...     +.|..                  .|..|+..|+.+
T Consensus       343 VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S-----gfC~v------------------TFteHts~Vt~v  398 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS-----GFCFV------------------TFTEHTSGVTAV  398 (893)
T ss_pred             eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC-----ceEEE------------------EeccCCCceEEE
Confidence            33567899999999999975 6999999999999999854     34433                  345688999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-cEEEEECCCceeEEEEc
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLRATLA  166 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~  166 (303)
                      +|+..|..+++.+.||+||.||+.....+.... .+......|++..|.+  ..+++|+.|. .|.+|+++++++...+.
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft-~P~p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT-SPEPIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeecccceeeeec-CCCceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecCeeeehhc
Confidence            999999999999999999999985433222211 1234456788888876  3455566554 59999999999999999


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCcee
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIV  244 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~  244 (303)
                      +|.++|.+++|+|.+..|+++|.|.+|++||+-.. ..+-++...+-+..++|+|+|.-+|+++ ||+|.+||.+.+...
T Consensus       476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence            99999999999999999999999999999998644 3445667778899999999997777665 999999999877665


Q ss_pred             eeeee--ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          245 EDLKV--DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..+..  ++.......+..+...  ....-..+.+++|+||+.+++|+..+.|.+|++.
T Consensus       556 ~~IdgrkD~~~gR~~~D~~ta~~--sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  556 GSIDGRKDLSGGRKETDRITAEN--SAKGKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             ccccchhhccccccccceeehhh--cccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence            44332  2222222222222211  1223456889999999999999999999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=215.85  Aligned_cols=272  Identities=26%  Similarity=0.420  Sum_probs=224.7

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------   76 (303)
                      .+.+.+.+|.+=|-+|++.|.+ ..|+||+.|++++|||++.     +.....+++|-..+..+.+++...         
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat-----g~LkltltGhi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT-----GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc-----CeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence            4566789999999999999975 7999999999999999986     345667888888888888887543         


Q ss_pred             ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118           77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT  141 (303)
Q Consensus        77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  141 (303)
                                     |-||-+.|++++.+|.-..|+||+.|..+||||.+..  ..+....+|..+|..+.+.|-.  +.
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~d--pq  291 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTD--PQ  291 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCC--Cc
Confidence                           4599999999999999999999999999999998653  3344456799999999988754  46


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSP  220 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~  220 (303)
                      +++|+.|++|++||++.++...++..|+..+.+++.+|....||+++.| .++-|++..+..+..+. ....+++++.+.
T Consensus       292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns  370 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS  370 (460)
T ss_pred             eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc
Confidence            9999999999999999999999999999999999999999899999877 58999999998877764 356789999999


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          221 NRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       221 ~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      |+.+++++..|.|.+||++++--.........+....            ....+.+.+|.-.|..|++|..|.+|++|.-
T Consensus       371 D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~------------sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  371 DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE------------SEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             CceEEEcCCceEEEEEecCcCcccccccccccCCccc------------cccceeEEeecccCceEEeccCCcceEEEec
Confidence            9999999999999999999886554432222221111            1123456778888999999999999999964

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-33  Score=239.61  Aligned_cols=272  Identities=28%  Similarity=0.448  Sum_probs=202.0

Q ss_pred             ceeeccccc-ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc------c------------eee--------
Q 048118            4 GLVLKGTMR-AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY------G------------VAR--------   56 (303)
Q Consensus         4 ~~~~~~~~~-~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~------~------------~~~--------   56 (303)
                      .+.+.+.+. +|.++|+++.|++++ .||||||.|+.|+||.+...+...      .            .+.        
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence            356667777 999999999999875 699999999999999875511100      0            000        


Q ss_pred             eee----cC-CCcce----EEEEeC--CCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCC
Q 048118           57 RRL----TG-HSHFV----QDVVLS--SDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAH  124 (303)
Q Consensus        57 ~~~----~~-~~~~i----~~~~~~--~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~  124 (303)
                      ...    .+ ++..+    ....+.  |-..|.||++.|..+.|+.++ +|++++.|++||||++.. .+...+    .|
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----~H  408 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----SH  408 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE----ec
Confidence            000    00 00000    000011  112478999999999999876 788999999999999853 344333    48


Q ss_pred             ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118          125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL  204 (303)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  204 (303)
                      ++.|+|++|+|.+ ..+|++|+-|+.+|+|++...+...-... ...|++++|.|+|+..++|+.+|.+++|+....+..
T Consensus       409 ndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  409 NDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             CCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            8999999999976 46899999999999999987776554333 478999999999999999999999999998876554


Q ss_pred             EEec---------CCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118          205 YSLD---------AGAVIHALCFSPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       205 ~~~~---------~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (303)
                      ..+.         ....|+.+.|.|..  .+|+++.|.+|+|||.+..+++.+++-....                 ...
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-----------------~SQ  549 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-----------------SSQ  549 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC-----------------Ccc
Confidence            3331         12379999999875  4899999999999999888887766532111                 111


Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          274 CTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       274 ~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                       ....|+.||++|++|+.|.-|++|+..
T Consensus       550 -~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  550 -ISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             -eeeeEccCCCEEEEeecCceEEEEeCC
Confidence             346788999999999999999999963

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=231.09  Aligned_cols=246  Identities=22%  Similarity=0.442  Sum_probs=200.5

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ++.++.+|++.|+++.|.|....+|++||.|+.|+||+.-...    .+.+                  .|.+|..+|..
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~lr------------------tf~gH~k~Vrd  263 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RCLR------------------TFKGHRKPVRD  263 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----ceeh------------------hhhcchhhhhh
Confidence            4557999999999999999667899999999999999986422    1111                  46789999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      ++|+++|..|++++.|+.|++||+.... ...+.    -...+.|++|+|++ +..+++|+.|+.|+.||+++++.++++
T Consensus       264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             hhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHH
Confidence            9999999999999999999999986432 22222    23357899999987 678999999999999999999999999


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--------------------------------c-----
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--------------------------------D-----  208 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------------------------~-----  208 (303)
                      ..|-+.|..+.|-++++.++++++|+.++||+.+.+-.+..+                                .     
T Consensus       339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence            999999999999999999999999999999998654221110                                0     


Q ss_pred             ------------CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEE
Q 048118          209 ------------AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT  275 (303)
Q Consensus       209 ------------~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (303)
                                  ....-..+.|||||.+|+++ ++|.+++||+++.+++..++                    .+...|.
T Consensus       419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--------------------ah~~~ci  478 (503)
T KOG0282|consen  419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--------------------AHDQPCI  478 (503)
T ss_pred             ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--------------------cCCcceE
Confidence                        01123458899999877766 59999999999988876554                    3445678


Q ss_pred             EEEEcCCCC-EEEEeecCCeEEEEe
Q 048118          276 SLNWSVDGS-TLFSGYTDGVIRVWG  299 (303)
Q Consensus       276 ~~~~sp~~~-~l~~gs~Dg~v~~w~  299 (303)
                      .+.|+|... .||+|+.||.|++|+
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            899999865 899999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.5e-31  Score=215.67  Aligned_cols=262  Identities=43%  Similarity=0.690  Sum_probs=208.6

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC------------
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG------------   75 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------   75 (303)
                      +.++++|.+.|+++.|+|++ +++++++.|+.+++|++....     ....+..|...+..+.+.+++            
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i   75 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI   75 (289)
T ss_pred             chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence            34678999999999999874 689999999999999987543     122333444555555555443            


Q ss_pred             ------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           76 ------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        76 ------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                  .+..|...|.++.|++++.++++++.|+.|++|+.......  .....|...+.+++|+|+.  ..++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~--~~l~  151 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL--TTLRGHTDWVNSVAFSPDG--TFVA  151 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE--EEeccCCCcEEEEEEcCcC--CEEE
Confidence                        13467778999999999889998888999999998632221  2223567789999999973  4666


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCC
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNR  222 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~  222 (303)
                      +++.++.|++||+++++....+..|...+.++.|+|+++.+++++.|+.+++||++.++.+..+ .....+.+++|+|++
T Consensus       152 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  231 (289)
T cd00200         152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG  231 (289)
T ss_pred             EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence            6667999999999988888888888889999999999999999999999999999988887777 455689999999998


Q ss_pred             eEEEEEc-CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          223 YWLCAAT-EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       223 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .+++++. ++.|++||+++++.+..+.                    .+...+.+++|+|++.+|++++.||.+++|+
T Consensus       232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         232 YLLASGSEDGTIRVWDLRTGECVQTLS--------------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCCcEEEEEcCCceeEEEcc--------------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8887777 9999999998766554332                    2233467899999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.9e-33  Score=220.62  Aligned_cols=221  Identities=26%  Similarity=0.481  Sum_probs=178.2

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.||.++|.+++|+|+|.+|+||+.|.++|+||+..+.-  ....+.|..+|.|++|+|++  ..+++|+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDg--k~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDG--KKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCc--chhhccccCCeEEEec
Confidence            3569999999999999999999999999999999865432  23345799999999999997  4699999999999999


Q ss_pred             CCCcee-EEEEcCCCCCeeEEEECC-----CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE
Q 048118          156 LSNCKL-RATLAGHTGYVNTVAVSP-----DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       156 ~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  228 (303)
                      .++++. -..+.+|...|++++|.|     .+++|++++.||.|+|||+..++++..+. +..+|.++.|-.++.+..++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS  265 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS  265 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence            988764 467899999999999965     56799999999999999999999888775 46789999998888888888


Q ss_pred             cCCcEEEEeCCCCceeeeeeecc--------cc-----------cccc-----------------------------cc-
Q 048118          229 TEQSIKIWDLESKSIVEDLKVDL--------KT-----------EAEK-----------------------------SE-  259 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~~~~~~~~~--------~~-----------~~~~-----------------------------~~-  259 (303)
                      .|+.|++|+...+++..+++-+.        +.           ....                             .+ 
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            89999999998877766654211        00           0000                             00 


Q ss_pred             ----------CccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          260 ----------ATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       260 ----------~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                ...+.....+|...++.+.||||++++|++|-|..|++|+-
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                      00011123456667899999999999999999999999974

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.3e-31  Score=209.77  Aligned_cols=264  Identities=18%  Similarity=0.321  Sum_probs=196.8

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      ++..|+++|++++.+| +.++++|||.|...-+|++..++..                       ..+.+|++.|+++.|
T Consensus        59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~-----------------------~eltgHKDSVt~~~F  114 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA-----------------------GELTGHKDSVTCCSF  114 (399)
T ss_pred             ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce-----------------------eEecCCCCceEEEEE
Confidence            6899999999999999 5689999999999999999765411                       145789999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~  168 (303)
                      +.+|.+||||+.+|.|+||+..... ...+.   ..-..+..++|||..  ..++.|+.||++.+|.+.++...+.+.+|
T Consensus       115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh  189 (399)
T KOG0296|consen  115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGH  189 (399)
T ss_pred             ccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCC
Confidence            9999999999999999999975432 22222   223458889999964  57899999999999999888888889999


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--------------C---------e-------------
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--------------A---------V-------------  212 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~---------~-------------  212 (303)
                      +.++++=.|.|+|+.++++..||+|++||+.+++++..+...              .         .             
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            999999999999999999999999999999999887665310              0         0             


Q ss_pred             ----------------EEEEEEcC---CCeEEEE-EcCCcEEEEeCCCCceeeeeee-------ccccc------ccc--
Q 048118          213 ----------------IHALCFSP---NRYWLCA-ATEQSIKIWDLESKSIVEDLKV-------DLKTE------AEK--  257 (303)
Q Consensus       213 ----------------v~~~~~s~---~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~-------~~~~~------~~~--  257 (303)
                                      +.++.+.|   .-.+.|+ +-||+|.|||+...++......       .+.+.      ...  
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~  349 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGK  349 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCce
Confidence                            00011111   1122222 3478899999866544332211       11010      000  


Q ss_pred             -----ccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          258 -----SEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       258 -----~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                           ........+..+|...+.+++.+|+.++++|+|.|++.++|++.+
T Consensus       350 v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~~  399 (399)
T KOG0296|consen  350 VRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVPN  399 (399)
T ss_pred             EEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecCC
Confidence                 011112345567888889999999999999999999999998753

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.3e-31  Score=218.06  Aligned_cols=269  Identities=20%  Similarity=0.342  Sum_probs=218.9

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC--------
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG--------   75 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------   75 (303)
                      ++.....+..|...++-..++|.+ .++|+|-..|+||||+....+...   ...++....+|.++.|+.++        
T Consensus        48 ~~~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiL---Knef~v~aG~I~Di~Wd~ds~RI~avGE  123 (603)
T KOG0318|consen   48 NPASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHIL---KNEFQVLAGPIKDISWDFDSKRIAAVGE  123 (603)
T ss_pred             CccceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceee---eeeeeecccccccceeCCCCcEEEEEec
Confidence            334455678888889999999985 699999999999999987644322   23344445667777777654        


Q ss_pred             ------------------ceecccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118           76 ------------------QFVGHTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        76 ------------------~~~~h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~  136 (303)
                                        .+.||...|++++|-|... +++||+.|+.|-+|+-  .+.+.......|...|+|++|+|+
T Consensus       124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG--PPFKFk~s~r~HskFV~~VRysPD  201 (603)
T KOG0318|consen  124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG--PPFKFKSSFREHSKFVNCVRYSPD  201 (603)
T ss_pred             CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeC--CCeeeeecccccccceeeEEECCC
Confidence                              3569999999999998754 7999999999999973  333333344568889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeEEEEc---CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--
Q 048118          137 TLQPTIVSASWDRTVKVWNLSNCKLRATLA---GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--  211 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--  211 (303)
                      +  ..+++.+.||.+.+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+...+.++..+.  
T Consensus       202 G--~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v  279 (603)
T KOG0318|consen  202 G--SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV  279 (603)
T ss_pred             C--CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence            7  579999999999999999999888887   899999999999999999999999999999999999988886543  


Q ss_pred             ---eEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE
Q 048118          212 ---VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS  288 (303)
Q Consensus       212 ---~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~  288 (303)
                         .+.+ -|. .+.++.++-+|.|.+++....+.+                    ..+.+|.-.++++..+|++++|.+
T Consensus       280 ~dqqvG~-lWq-kd~lItVSl~G~in~ln~~d~~~~--------------------~~i~GHnK~ITaLtv~~d~~~i~S  337 (603)
T KOG0318|consen  280 EDQQVGC-LWQ-KDHLITVSLSGTINYLNPSDPSVL--------------------KVISGHNKSITALTVSPDGKTIYS  337 (603)
T ss_pred             hceEEEE-EEe-CCeEEEEEcCcEEEEecccCCChh--------------------heecccccceeEEEEcCCCCEEEe
Confidence               3433 344 678889999999999998766533                    235667777899999999999999


Q ss_pred             eecCCeEEEEeccc
Q 048118          289 GYTDGVIRVWGIGR  302 (303)
Q Consensus       289 gs~Dg~v~~w~~~~  302 (303)
                      |+.||.|.-|+++.
T Consensus       338 gsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  338 GSYDGHINSWDSGS  351 (603)
T ss_pred             eccCceEEEEecCC
Confidence            99999999999863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-31  Score=231.94  Aligned_cols=252  Identities=31%  Similarity=0.514  Sum_probs=201.8

Q ss_pred             ccccccc-ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            8 KGTMRAH-TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         8 ~~~~~~h-~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ...+..| ...|+++.|++++ +.+++++.|+.+++|+......   ..                  ...+.+|...|..
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~---~~------------------~~~l~~h~~~v~~  208 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS---NL------------------LRELSGHTRGVSD  208 (456)
T ss_pred             eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc---hh------------------hccccccccceee
Confidence            4445554 6889999999876 5699999999999998843221   00                  0123578899999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      ++|+|+++++++++.|++|++||.... ........+|...|.+++|+|.+  ..+++|+.|++|++||++++++...+.
T Consensus       209 ~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  209 VAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             eEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeee
Confidence            999999999999999999999998332 22333445899999999999987  589999999999999999999999999


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEecC--CC-eEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDA--GA-VIHALCFSPNRYWLCAA-TEQSIKIWDLES  240 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~--~~-~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  240 (303)
                      +|.+.|++++|++++++|++++.|+.|++||+.+++  ++..+..  .. +++.++|+|++.++.++ .|+.+++||++.
T Consensus       286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS  365 (456)
T ss_pred             ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence            999999999999999999999999999999999988  3444432  22 68999999998766554 577999999998


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++.+..+..+...                 ...+.+...++.+.++.+|+.|+.|.+|+++
T Consensus       366 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  366 GKSVGTYTGHSNL-----------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             CcceeeecccCCc-----------------ceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            8777665533211                 0112334457899999999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.4e-32  Score=231.87  Aligned_cols=248  Identities=29%  Similarity=0.421  Sum_probs=204.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .++||.+.|.++.....+ .+|+|||.|.++++|.++++..+.                   .+-.+..+|++.|.++++
T Consensus       360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~-------------------~~~a~~~gH~~svgava~  419 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKS-------------------LCVAQANGHTNSVGAVAG  419 (775)
T ss_pred             EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchh-------------------hhhhhhcccccccceeee
Confidence            478999999999844343 699999999999999984432111                   111346789999999999


Q ss_pred             eeCC-CEEEEEeCCCcEEEEecCC--ceeeee-----ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           90 SIDN-RQIVSASRDRTIKLWNTLG--ECKYTI-----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        90 ~~~~-~~l~t~~~d~~i~vw~~~~--~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      +..+ ..|+++|.|+++++|++..  +....+     .....|...|+|++.+|+.  ..+++|+.|.+.++|++.....
T Consensus       420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l  497 (775)
T KOG0319|consen  420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRL  497 (775)
T ss_pred             cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC--ceEEecccccceeeecccCceE
Confidence            7654 5899999999999999854  111111     1234678889999999986  5899999999999999998899


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCAATEQSIKIWDLE  239 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~  239 (303)
                      ..++.+|...|+++.|+|..+.++++|.|++|+||.+.+..++.++. +...|..+.|-.++ +++.+++||-|++||++
T Consensus       498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99999999999999999999999999999999999999999999997 56778888886665 67778899999999999


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      +...+..+                    ..|+-.+++++-+|...+++||+.||.+.+|.
T Consensus       578 t~eC~~tl--------------------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  578 TNECEMTL--------------------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             chhhhhhh--------------------hhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            88765543                    34566788999999999999999999999994

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.3e-32  Score=224.22  Aligned_cols=265  Identities=19%  Similarity=0.332  Sum_probs=203.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------------
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------------   76 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------   76 (303)
                      |.+|...|.++++.|.+. .|+|||-|-+|++||++.+...+.-.+...++..+.|+.+.+++++.              
T Consensus       163 l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             ccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence            778999999999999875 69999999999999998776554444555667778888888887653              


Q ss_pred             ----------------------eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCc--eeeee--ecCCCCccceE
Q 048118           77 ----------------------FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGE--CKYTI--QEGDAHTEWVS  129 (303)
Q Consensus        77 ----------------------~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~--~~~~~--~~~~~~~~~i~  129 (303)
                                            -+||...+++-+|+|.. +.|+|++.|+++|+|++...  ....+  ....+..-.+.
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence                                  13899999999999975 57999999999999997532  11111  11223344578


Q ss_pred             EEEEcCCCCCCEEEEEeCCCcEEEEECCCcee---EEEEcCCCC--CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-e
Q 048118          130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL---RATLAGHTG--YVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-R  203 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~  203 (303)
                      .++|+|++  ..+++|+.||+|++|+..+...   ...-..|..  .|+++.||++|++|++-+.|+++++||++..+ +
T Consensus       322 sC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  322 SCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             eeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence            89999987  4699999999999999754322   122245766  89999999999999999999999999998654 4


Q ss_pred             EEEe---cCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118          204 LYSL---DAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       204 ~~~~---~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (303)
                      +...   .....-..++|||+..++.+++       .|.+.+||..+-+.+..+.+.                    ...
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--------------------~aS  459 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--------------------TAS  459 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--------------------Cce
Confidence            4332   2234566789999988776653       467999998877766554432                    234


Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          274 CTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       274 ~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      |..+.|+|.-+.|++|+.||++++|
T Consensus       460 vv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  460 VVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             EEEEeecchhhheeeecCCCceEEE
Confidence            5678899999999999999999887

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.4e-30  Score=212.82  Aligned_cols=270  Identities=23%  Similarity=0.400  Sum_probs=210.7

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce---------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF---------   77 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------   77 (303)
                      -+|++-||...|+++.|-|..+=+++|||.|+++.||+=.+.     .....+..|+.+|+++.++|++.+         
T Consensus       139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            357889999999999999999989999999999999975432     223456789999999999998752         


Q ss_pred             ------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee------------------ee----
Q 048118           78 ------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK------------------YT----  117 (303)
Q Consensus        78 ------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~------------------~~----  117 (303)
                                        .+|++.|++++|+||+++++|+++|++++|||......                  ++    
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence                              28999999999999999999999999999999632100                  00    


Q ss_pred             -------------------eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE-----------E----
Q 048118          118 -------------------IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-----------A----  163 (303)
Q Consensus       118 -------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~-----------~----  163 (303)
                                         .....+|+..|+++..+|++  ..+++|+.||.|.-|+...+..-           .    
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence                               11123688889999999987  57999999999999986432100           0    


Q ss_pred             ----------------E------------------------------------------EcCCC--------CCeeEEEE
Q 048118          164 ----------------T------------------------------------------LAGHT--------GYVNTVAV  177 (303)
Q Consensus       164 ----------------~------------------------------------------~~~~~--------~~i~~~~~  177 (303)
                                      .                                          ++.+.        -...++++
T Consensus       372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv  451 (603)
T KOG0318|consen  372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV  451 (603)
T ss_pred             cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence                            0                                          00111        01347889


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCc---eEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecccc
Q 048118          178 SPDGSLCASGGKDGVILLWDLAEGK---RLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLKT  253 (303)
Q Consensus       178 ~~~~~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~  253 (303)
                      +|++..+++|+.|+.|++|.+....   ......+...+.+++|||++.+|+++. .+.+.+||+.+++...        
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~--------  523 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT--------  523 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec--------
Confidence            9999999999999999999998654   234456788999999999999888775 6889999998876521        


Q ss_pred             ccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                                 .....|...+.+++|+|++.+|||||-|-+|.+|++.+
T Consensus       524 -----------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  524 -----------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             -----------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence                       11233566788999999999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-30  Score=221.21  Aligned_cols=270  Identities=26%  Similarity=0.459  Sum_probs=209.2

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeC----------
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS----------   72 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------   72 (303)
                      .++.+.+++.+|-+.|++|.|+.+ .++|++||.|.+.++|.+.....   .....+.+|..+|-...+.          
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvs  208 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVS  208 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEe
Confidence            467788899999999999999965 68999999999999998864332   1222333444333221111          


Q ss_pred             CCCc----------------------------------------------------------------------------
Q 048118           73 SDGQ----------------------------------------------------------------------------   76 (303)
Q Consensus        73 ~~~~----------------------------------------------------------------------------   76 (303)
                      .+|.                                                                            
T Consensus       209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~  288 (893)
T KOG0291|consen  209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE  288 (893)
T ss_pred             cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence            0000                                                                            


Q ss_pred             e---------ecc-----cCCEEEEEEeeCCCEEEEEeCC-CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118           77 F---------VGH-----TKDVLSVAFSIDNRQIVSASRD-RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT  141 (303)
Q Consensus        77 ~---------~~h-----~~~i~~i~~~~~~~~l~t~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  141 (303)
                      +         .-|     ..+|..++|+..|.++|.|+.- |.+.||+...+. + +..+.+|...+.+++++|++  .+
T Consensus       289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-Y-VlKQQgH~~~i~~l~YSpDg--q~  364 (893)
T KOG0291|consen  289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-Y-VLKQQGHSDRITSLAYSPDG--QL  364 (893)
T ss_pred             eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-e-eeeccccccceeeEEECCCC--cE
Confidence            0         001     1346667777777777766543 677777765442 2 22345788889999999997  58


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--eEEEEEEc
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHALCFS  219 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~s  219 (303)
                      +++|+.||.|++||...+-|..++..|+..|+.+.|+..|+.+++++.||+|+.||+......+++..+.  ...+++..
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            9999999999999999999999999999999999999999999999999999999999988888876554  45678888


Q ss_pred             CCCeEEEEEcCC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          220 PNRYWLCAATEQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       220 ~~~~~l~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      |.|.++++++..  .|++|++++|+++..+                    .+|...+.+++|+|++..|++||.|.+||+
T Consensus       445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiL--------------------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  445 PSGELVCAGAQDSFEIFVWSVQTGQLLDIL--------------------SGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             CCCCEEEeeccceEEEEEEEeecCeeeehh--------------------cCCCCcceeeEEccccCeEEeccccceEEE
Confidence            889888777643  5999999999987654                    456777888999999999999999999999


Q ss_pred             Eec
Q 048118          298 WGI  300 (303)
Q Consensus       298 w~~  300 (303)
                      ||+
T Consensus       505 W~i  507 (893)
T KOG0291|consen  505 WDI  507 (893)
T ss_pred             EEe
Confidence            997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-30  Score=200.08  Aligned_cols=205  Identities=30%  Similarity=0.495  Sum_probs=172.3

Q ss_pred             CceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceee---eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           75 GQFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKY---TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        75 ~~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      +.+.+|++.|+.++..+. ...+++++.|+.+.+|++......   ......+|+..|..+..++++  .+++++++|++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~   86 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT   86 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence            457789999999998876 568999999999999998654222   244456789999999999986  57999999999


Q ss_pred             EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--C-CCeEEEEEEcCC--CeEE
Q 048118          151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--A-GAVIHALCFSPN--RYWL  225 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~-~~~v~~~~~s~~--~~~l  225 (303)
                      +++||+.+++..+.|.+|...|.+++|+|+.+.+++|+.|.++++||.... +.+++.  . ...|.++.|+|.  ..++
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence            999999999999999999999999999999999999999999999998754 444543  2 578999999998  4444


Q ss_pred             -EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          226 -CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       226 -~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                       .++.|+.+++||+++.++...                    +.+|..+++.+++||||.+.++|+.||.+.+||++.
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~--------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTT--------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EEccCCceEEEEccCCcchhhc--------------------cccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence             456799999999998776432                    345677889999999999999999999999999863

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-31  Score=197.16  Aligned_cols=243  Identities=21%  Similarity=0.386  Sum_probs=198.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.+|.++|.++.++.++ +|.+||++|.++++|+...+     .++.                  .|.+|-.+|..++.
T Consensus        12 ~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg-----~lik------------------tYsghG~EVlD~~~   67 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRG-----ALIK------------------TYSGHGHEVLDAAL   67 (307)
T ss_pred             eecccccceEEEEEccCC-CEEEEcCCCceEEeeccccc-----ceee------------------eecCCCceeeeccc
Confidence            578899999999999874 79999999999999986432     2222                  46788889999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC--ceeEEEEcC
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--CKLRATLAG  167 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--~~~~~~~~~  167 (303)
                      +.+...|++|+.|+.+.+||....  ........|...|+.++|+.+.  ..+++|+.|.++++||.+.  .++++.+..
T Consensus        68 s~Dnskf~s~GgDk~v~vwDV~TG--kv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQilde  143 (307)
T KOG0316|consen   68 SSDNSKFASCGGDKAVQVWDVNTG--KVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDE  143 (307)
T ss_pred             cccccccccCCCCceEEEEEcccC--eeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhh
Confidence            999999999999999999998653  2344556889999999999765  5799999999999999876  456777777


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeee
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~  246 (303)
                      ....|.++.++  +..+++|+.||+++.||++.|+.... -.+.+|++++|+++++ .|+++-++.+++.|-+++++++.
T Consensus       144 a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s  220 (307)
T KOG0316|consen  144 AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS  220 (307)
T ss_pred             hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence            78889999886  46789999999999999998875322 2367899999999985 66777899999999999999887


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++-+.+                  ..+=...+++.....+++||+||.|.+||+-
T Consensus       221 YkGhkn------------------~eykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  221 YKGHKN------------------MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             hccccc------------------ceeeeeeeecccceeEEeccCCceEEEEEec
Confidence            664321                  1222456677777899999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-31  Score=210.21  Aligned_cols=265  Identities=23%  Similarity=0.385  Sum_probs=208.6

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee----------
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV----------   78 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------   78 (303)
                      ..+..|.+.|+-+.|++++ .+|||++.|.+..+|+...+..  .....++.+|..+|..+.|+|+.++.          
T Consensus       218 qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            4688999999999999765 7999999999999999876543  23456678999999999999997653          


Q ss_pred             ---------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           79 ---------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        79 ---------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                     +|...+.+++|.|||..+++|+.|+++..||+.++........  ....|.+++..+++.  .++
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv--r~~~v~dlait~Dgk--~vl  370 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV--RDPKVHDLAITYDGK--YVL  370 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc--ccceeEEEEEcCCCc--EEE
Confidence                           4456899999999999999999999999999987654433221  234588999999873  677


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEc
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFS  219 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s  219 (303)
                      ..+.|..|++|+..+...+..+. ...+|+++.+|.+++++++.-.+..+.+||++....+..+..    ...|++ ||-
T Consensus       371 ~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFg  448 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFG  448 (519)
T ss_pred             EEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-ccC
Confidence            78899999999987655444333 346899999999999999999999999999997665555432    234554 343


Q ss_pred             C-CCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEE
Q 048118          220 P-NRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIR  296 (303)
Q Consensus       220 ~-~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~  296 (303)
                      - +..++ .++.|++|+||+.++++++..+                    .+|...|+.++|+|..+ ++|+||+||+||
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~sgkll~~L--------------------sGHs~~vNcVswNP~~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRISGKLLAVL--------------------SGHSKTVNCVSWNPADPEMFASASDDGTIR  508 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccCCceeEee--------------------cCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence            3 22444 4556999999999999887654                    45566788999999875 799999999999


Q ss_pred             EEeccc
Q 048118          297 VWGIGR  302 (303)
Q Consensus       297 ~w~~~~  302 (303)
                      +|.+++
T Consensus       509 IWg~~~  514 (519)
T KOG0293|consen  509 IWGPSD  514 (519)
T ss_pred             EecCCc
Confidence            999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3e-30  Score=210.43  Aligned_cols=244  Identities=22%  Similarity=0.377  Sum_probs=203.1

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .++.+|..|+++|+++.|+.. +.+|++++.|+++.+||..+++...                       ++.-|+.+-.
T Consensus       267 ~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q-----------------------~f~~~s~~~l  322 (524)
T KOG0273|consen  267 NLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQ-----------------------QFEFHSAPAL  322 (524)
T ss_pred             hhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEEE-----------------------eeeeccCCcc
Confidence            356679999999999999975 5799999999999999986543221                       2333555555


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      .+.|-.+. -|++++.|+.|+|+.+... +..++   .+|...|.++.|+|.+  .+|++++.|+++++|......+...
T Consensus       323 DVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~  396 (524)
T KOG0273|consen  323 DVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHD  396 (524)
T ss_pred             ceEEecCc-eEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhh
Confidence            67776543 6889999999999987432 22222   3588999999999986  5899999999999999888888888


Q ss_pred             EcCCCCCeeEEEECCCC---------CEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEc-CCcE
Q 048118          165 LAGHTGYVNTVAVSPDG---------SLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAAT-EQSI  233 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i  233 (303)
                      +..|+..|..+.|+|.|         ..+++++.|++|++||+..+.++.++ .+..+|++++|+|++.+++.++ |+.|
T Consensus       397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V  476 (524)
T KOG0273|consen  397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV  476 (524)
T ss_pred             hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence            99999999999999875         46899999999999999999999998 7789999999999998888765 9999


Q ss_pred             EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .+|+.+++++++.+.-                     ...+..++|+-+|.+|..+-.||.+++-|+
T Consensus       477 ~iws~~~~~l~~s~~~---------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  477 HIWSTKTGKLVKSYQG---------------------TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             EeccccchheeEeecC---------------------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            9999999998876531                     234678999999999999999999999886

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=4.7e-29  Score=232.84  Aligned_cols=278  Identities=21%  Similarity=0.309  Sum_probs=198.4

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCc---cccceeeeeecCCCcceEEEEeCCC-----------
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE---KTYGVARRRLTGHSHFVQDVVLSSD-----------   74 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~-----------   74 (303)
                      +.+..|...|++++|+|++ +++|||+.|++|++|+.....   .....+...+.+ ...+..+.+++.           
T Consensus       477 ~~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~D  554 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFE  554 (793)
T ss_pred             ccccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCC
Confidence            4566799999999999875 699999999999999975311   000011111121 223444444331           


Q ss_pred             C--------------ceecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCC
Q 048118           75 G--------------QFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ  139 (303)
Q Consensus        75 ~--------------~~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  139 (303)
                      +              .+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.........  . +...+.++.|++.. .
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--~-~~~~v~~v~~~~~~-g  630 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI--K-TKANICCVQFPSES-G  630 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE--e-cCCCeEEEEEeCCC-C
Confidence            1              2458999999999997 7889999999999999998643222111  1 22458899996543 3


Q ss_pred             CEEEEEeCCCcEEEEECCCce-eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC------ceEEEec-CCC
Q 048118          140 PTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG------KRLYSLD-AGA  211 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~-~~~  211 (303)
                      ..+++|+.|+.|++||+++.+ ....+.+|...|..+.|. ++.+|++++.|++|++||++.+      ..+..+. +..
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~  709 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN  709 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence            579999999999999998765 456778899999999997 6789999999999999999743      3455554 345


Q ss_pred             eEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          212 VIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       212 ~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      .+..++|+|++.++++ +.|+.|++|+......+..........       ........+...+.+++|+|++.+|++|+
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP-------VSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc-------ccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence            6888999998876655 469999999987654332222110000       00011223445688999999999999999


Q ss_pred             cCCeEEEEec
Q 048118          291 TDGVIRVWGI  300 (303)
Q Consensus       291 ~Dg~v~~w~~  300 (303)
                      .||.|++|++
T Consensus       783 ~dG~I~i~~~  792 (793)
T PLN00181        783 STGNIKILEM  792 (793)
T ss_pred             CCCcEEEEec
Confidence            9999999986

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.1e-30  Score=218.12  Aligned_cols=251  Identities=24%  Similarity=0.437  Sum_probs=207.4

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      +.+.+.+..|.+.|.+|.++|..+ .++++-..|.+.||+..+.....               +        +.-..-+|
T Consensus         3 l~~krk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVk---------------s--------feV~~~Pv   58 (794)
T KOG0276|consen    3 LDFKRKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVK---------------S--------FEVSEVPV   58 (794)
T ss_pred             chhhhHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeee---------------e--------eeecccch
Confidence            345566778999999999999865 78888889999999987543211               1        11234577


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-ceeEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRA  163 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~~~  163 (303)
                      .++.|-+-..++++|+.|..||||+..+.++  +...++|.+.|+|++.||.  .+++++++.|-.|++||-++ ..+.+
T Consensus        59 Ra~kfiaRknWiv~GsDD~~IrVfnynt~ek--V~~FeAH~DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~wa~~q  134 (794)
T KOG0276|consen   59 RAAKFIARKNWIVTGSDDMQIRVFNYNTGEK--VKTFEAHSDYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENEWACEQ  134 (794)
T ss_pred             hhheeeeccceEEEecCCceEEEEeccccee--eEEeeccccceeeeeecCC--CCeEEecCCccEEEEeeccCceeeee
Confidence            8888988889999999999999999866443  4556789999999999997  47999999999999999865 47889


Q ss_pred             EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCC---eEEEEEcCCcEEEEeC
Q 048118          164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR---YWLCAATEQSIKIWDL  238 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~---~~l~~~~~~~i~iwd~  238 (303)
                      ++.+|.-.|.+++|+| |.+.|++++.|++|+||.+.+..+.+++.. ...|+++.|-+.+   .++.++.|..|++||.
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            9999999999999999 667999999999999999998888888864 5679999998876   5666677889999999


Q ss_pred             CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          239 ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                      ++...+..+                    .+|..-+..+.|+|.-+.+++||+||+||+|.-..|
T Consensus       215 Qtk~CV~TL--------------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  215 QTKSCVQTL--------------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             chHHHHHHh--------------------hcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            887665543                    445555677899999999999999999999987665

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=221.63  Aligned_cols=248  Identities=28%  Similarity=0.486  Sum_probs=196.5

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      +...+.+|...|..++|+|++ .++++++.|++|++||+.....    ...                  .+.+|...|++
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~----~~~------------------~l~gH~~~v~~  251 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR----NLK------------------TLKGHSTYVTS  251 (456)
T ss_pred             hhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe----EEE------------------EecCCCCceEE
Confidence            455678999999999999986 5999999999999999943211    111                  35689999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEEE
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRAT  164 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~  164 (303)
                      ++|+|+++++++|+.|++|++||+....  .......|...|.+++|++++  ..+++++.|+.|++||+.++.  +...
T Consensus       252 ~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  252 VAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             EEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccCCceEEEEECCCC--CEEEEcCCCccEEEEECCCCceeeeec
Confidence            9999999999999999999999987522  223335788899999999986  578999999999999999988  5567


Q ss_pred             EcCCCCC--eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CC--eEEEEEEcCCCeEEE-EEcCCcEEEEe
Q 048118          165 LAGHTGY--VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GA--VIHALCFSPNRYWLC-AATEQSIKIWD  237 (303)
Q Consensus       165 ~~~~~~~--i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~--~v~~~~~s~~~~~l~-~~~~~~i~iwd  237 (303)
                      +.++...  ++.+.|+|++.++++++.|+.+++||+..+..+..+..  ..  .+.+...++.+.++. ++.|+.|++||
T Consensus       328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            7766555  99999999999999999999999999998877666532  11  333445566776654 55699999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeecccc-ceeEEEEEEcCCCCEEEEee--cCCeEEEEecc
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKK-NIYCTSLNWSVDGSTLFSGY--TDGVIRVWGIG  301 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~l~~gs--~Dg~v~~w~~~  301 (303)
                      +.++..+..+.                    ++ ...+..++++|...++++++  .|+.+++|...
T Consensus       408 ~~s~~~~~~l~--------------------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  408 SSSGGILQRLE--------------------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCccchhhhhc--------------------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            98765544332                    22 33446788999999999998  79999999753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=3.3e-29  Score=193.86  Aligned_cols=260  Identities=22%  Similarity=0.336  Sum_probs=200.1

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------   76 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------   76 (303)
                      .+.+|++.|+.+.|+|++ .+|||||.|..|-+|+....++.    ...+.+|+++|-.+.+.+++.             
T Consensus        42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN----~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCEN----FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccc----eeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            477899999999999965 68999999999999997655433    234457888887777766542             


Q ss_pred             -----------eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE
Q 048118           77 -----------FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS  144 (303)
Q Consensus        77 -----------~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  144 (303)
                                 +++|..-|+.++-+.-| .++.+++.|++++|||.+...-  ++. ......++++.|...+.  .+.+
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--~~t-~~~kyqltAv~f~d~s~--qv~s  191 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--IKT-FENKYQLTAVGFKDTSD--QVIS  191 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch--hhc-cccceeEEEEEeccccc--ceee
Confidence                       34677777777744333 4677788888888888754321  111 12345688999988763  5889


Q ss_pred             EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC---ce-EEEecC-----CCeEEE
Q 048118          145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---KR-LYSLDA-----GAVIHA  215 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~-~~~~~~-----~~~v~~  215 (303)
                      |+-|+.|++||++.+.....+.+|.++|+.+..+|+|.++++-+-|.++++||++..   ++ +..+..     +...-.
T Consensus       192 ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            999999999999999999999999999999999999999999999999999999753   32 444332     123445


Q ss_pred             EEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118          216 LCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       216 ~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      ++|+|++..+. .+.|..+++||..+..++..                    +.+|..-++.++|+|..+.|.+++.|.+
T Consensus       272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--------------------lpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYK--------------------LPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             eeccCCCCccccccccceEEEeecccccEEEE--------------------cCCcceeEEEeeecCCCcEEEEeccCce
Confidence            78999987664 56799999999987766543                    3456667889999999999999999999


Q ss_pred             EEEEe
Q 048118          295 IRVWG  299 (303)
Q Consensus       295 v~~w~  299 (303)
                      |.+=.
T Consensus       332 i~lge  336 (338)
T KOG0265|consen  332 IYLGE  336 (338)
T ss_pred             eEeec
Confidence            98743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=4.1e-29  Score=190.50  Aligned_cols=261  Identities=21%  Similarity=0.352  Sum_probs=198.6

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      |.||..+++.|.++.++ ++|.||+.|.+..+|-...++..                       |.|.||++.|++++.+
T Consensus         6 l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerl-----------------------Gty~GHtGavW~~Did   61 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERL-----------------------GTYDGHTGAVWCCDID   61 (327)
T ss_pred             cccCccccceEEecCCC-cEEEEecCCCCceEEEecCCcee-----------------------eeecCCCceEEEEEec
Confidence            45699999999999765 79999999999999976444321                       4688999999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-----eCCCcEEEEECC-------C
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-----SWDRTVKVWNLS-------N  158 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~dg~i~iwd~~-------~  158 (303)
                      -+.++++||++|.++++||..........   .-..+|..+.|++++  .+++..     +..+.|.++|++       .
T Consensus        62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~---k~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s  136 (327)
T KOG0643|consen   62 WDSKHLITGSADQTAKLWDVETGKQLATW---KTNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDS  136 (327)
T ss_pred             CCcceeeeccccceeEEEEcCCCcEEEEe---ecCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence            99999999999999999998643222221   234568889999986  333333     334679999987       3


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCe-EEEEEcCCcEEE
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRY-WLCAATEQSIKI  235 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~~~i~i  235 (303)
                      .++...+..+...++.+-|.|-++.|++|.+||.|.+||+++++.+..-  .+...|+.++++++.. ++.++.|..-++
T Consensus       137 ~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence            4556777778889999999999999999999999999999998665443  3456899999999985 456667999999


Q ss_pred             EeCCCCceeeeeeeccc----------------cccccccCccce-------------------eeccccceeEEEEEEc
Q 048118          236 WDLESKSIVEDLKVDLK----------------TEAEKSEATTAT-------------------TTIKKKNIYCTSLNWS  280 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~s  280 (303)
                      ||.++-++++.+....-                ...+..+.++..                   ...++|...+++++|+
T Consensus       217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            99998877776643210                011111111110                   1234566778999999


Q ss_pred             CCCCEEEEeecCCeEEEEec
Q 048118          281 VDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       281 p~~~~l~~gs~Dg~v~~w~~  300 (303)
                      |+|+..++|+.||.||+.-.
T Consensus       297 PdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             CCCcccccCCCCceEEEEEe
Confidence            99999999999999998643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=8.2e-31  Score=198.10  Aligned_cols=245  Identities=20%  Similarity=0.305  Sum_probs=201.6

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      -++++++|+++|+....+.+ .-+-|+++.|-+-++||.-.+...     .                   -..|+.-|..
T Consensus        51 wigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdel-----h-------------------sf~hkhivk~  105 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDEL-----H-------------------SFEHKHIVKA  105 (334)
T ss_pred             cEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhh-----h-------------------hhhhhheeee
Confidence            36789999999999888854 456899999999999997543221     1                   1247888999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      ++|+.+..+|+||+.++.+||||++... -.......|+..|..+-|....  ..+++.+.|+.||+||.++++.++++.
T Consensus       106 ~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  106 VAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             EEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEe
Confidence            9999999999999999999999986432 2333446788889998887754  468888999999999999999888876


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceee
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      - +.+|+++.++++|++|.++ ..+.|+.||..+...++.......|.+.+++|+. .+++++.|..++.||..+++.+.
T Consensus       183 ~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  183 F-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             c-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence            4 5689999999999887554 5678999999999999998888899999999986 55666789999999999987665


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .+                   .++|...+.++.|+|+|...++||+||+||+|..
T Consensus       261 ~~-------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  261 SY-------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ec-------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            32                   2455667788999999999999999999999975

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.7e-28  Score=212.81  Aligned_cols=256  Identities=21%  Similarity=0.287  Sum_probs=181.8

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-CCC
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI-DNR   94 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~-~~~   94 (303)
                      ..|......+++ ..+++++.+.....|+......   +.  .+.. .+.+.    .....+.+|.+.|.+++|+| ++.
T Consensus        21 ~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~---v~--~~~~-~G~~~----~~~~~l~GH~~~V~~v~fsP~d~~   89 (493)
T PTZ00421         21 LNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTA---VL--KHTD-YGKLA----SNPPILLGQEGPIIDVAFNPFDPQ   89 (493)
T ss_pred             eccccccccCCC-CCcEeECCceEEEEEecCCceE---Ee--eccc-cccCC----CCCceEeCCCCCEEEEEEcCCCCC
Confidence            344444444443 3478888888888997643210   00  0000 00000    00113678999999999999 788


Q ss_pred             EEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118           95 QIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      +|++++.|+.|++||+.....     ..+.....|...|.+++|+|.. ...+++++.|+.|++||+.+++....+.+|.
T Consensus        90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~  168 (493)
T PTZ00421         90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHS  168 (493)
T ss_pred             EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence            999999999999999854211     1122335688899999999975 3579999999999999999998888899999


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--CeEEEEEEcCCCe-EEEEE----cCCcEEEEeCCCCc
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRY-WLCAA----TEQSIKIWDLESKS  242 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~-~l~~~----~~~~i~iwd~~~~~  242 (303)
                      ..|.+++|+|++.+|++++.|++|++||+++++.+..+...  .....+.|.+++. +++++    .|+.|++||+++..
T Consensus       169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999999999999999999999999999999888776432  2344567888754 44443    36899999997643


Q ss_pred             e-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEeccc
Q 048118          243 I-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIGR  302 (303)
Q Consensus       243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~~  302 (303)
                      . +.....                   .....+....|+|++.+|++|+ .||.|++||+..
T Consensus       249 ~p~~~~~~-------------------d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        249 SPYSTVDL-------------------DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CceeEecc-------------------CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            2 111000                   0011223456899999998887 599999999853

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-30  Score=193.06  Aligned_cols=241  Identities=25%  Similarity=0.428  Sum_probs=189.4

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-CC
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-NR   94 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-~~   94 (303)
                      +..+.|+|++..++.+++++.||++++||....++                      |-..++.|+.+|.++.|++. +.
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----------------------Pi~~~kEH~~EV~Svdwn~~~r~  118 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----------------------PIHKFKEHKREVYSVDWNTVRRR  118 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCc----------------------chhHHHhhhhheEEeccccccce
Confidence            67889999999999999999999999999653221                      11256789999999999985 56


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118           95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT  174 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  174 (303)
                      .+++++.|++|++|+.....  .+....+|+.-|...+|+|.. .+.+++++.|+.+++||++..-....+..|...|.+
T Consensus       119 ~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~  195 (311)
T KOG0277|consen  119 IFLTSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC  195 (311)
T ss_pred             eEEeeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence            78899999999999964322  233356788899999999975 578999999999999999764334448889999999


Q ss_pred             EEECC-CCCEEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCCC-eEEEE-EcCCcEEEEeCCCCceeeeeee
Q 048118          175 VAVSP-DGSLCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPNR-YWLCA-ATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       175 ~~~~~-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      +.|+. +.+.+++|+.|+.|++||++.- .++..+. ++..|+.+.|||.. .+|++ +-|-++++||...+.-..+   
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e---  272 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE---  272 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh---
Confidence            99987 6678999999999999999864 4555553 35689999999984 45554 4589999999874432110   


Q ss_pred             ccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEeecCCeEEEEec
Q 048118          250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs~Dg~v~~w~~  300 (303)
                                      +...|..++-.++||+. ..++|+++-|+.+.+|+.
T Consensus       273 ----------------~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 ----------------TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ----------------hhhccceEEeccccccccCceeeecccccceeeecc
Confidence                            12235667788999985 569999999999999984

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=189.18  Aligned_cols=225  Identities=25%  Similarity=0.419  Sum_probs=181.8

Q ss_pred             eeeecCCCcceEEEEeCCCCcee-------------cc-----------cCCEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 048118           56 RRRLTGHSHFVQDVVLSSDGQFV-------------GH-----------TKDVLSVAFSIDNRQIVSASRDRTIKLWNTL  111 (303)
Q Consensus        56 ~~~~~~~~~~i~~~~~~~~~~~~-------------~h-----------~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~  111 (303)
                      ++.+.+|.+.|++..|+++.+..             .+           ..=|-.++|+|.|.++|.|+.|+.+.||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            46677888888888877765421             11           1125678888888888888888888888875


Q ss_pred             Ccee----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC-CCCEEEE
Q 048118          112 GECK----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCAS  186 (303)
Q Consensus       112 ~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  186 (303)
                      ....    ........|+..+.|+.|-++.   .+++++.|.+.-+||+++++....|.+|.+.|.+++++| +++.|++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~---~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN---HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCC---ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence            3211    1223345789999999998853   699999999999999999999999999999999999999 9999999


Q ss_pred             EeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccce
Q 048118          187 GGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT  264 (303)
Q Consensus       187 ~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (303)
                      |+-|+..++||++.+..+++|.. .+-|++++|.|+|.-+++ +.|+.+++||+|..+.+..+..               
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---------------  269 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---------------  269 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---------------
Confidence            99999999999999999999864 678999999999976655 5588999999998776654431               


Q ss_pred             eeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          265 TTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       265 ~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                         ......+++++||-.|++|+.|..|.++.+||.-
T Consensus       270 ---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  270 ---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             ---CcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence               1123346889999999999999999999999963

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=205.62  Aligned_cols=244  Identities=25%  Similarity=0.416  Sum_probs=196.6

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      ..++|.+++|+|..+.-+|+.+. -.+.||+....+..                       ..+......+.+++|-.||
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------------k~~srFk~~v~s~~fR~DG   80 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------------KTFSRFKDVVYSVDFRSDG   80 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------------hhHHhhccceeEEEeecCC
Confidence            33689999999977754555444 36888876543211                       0122245678999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN  173 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  173 (303)
                      ++++.|+..|.|+++|...  +........|+.++..+.|+|.+ ...+++|+.|+.+++||+.+......+.+|++.|.
T Consensus        81 ~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR  157 (487)
T KOG0310|consen   81 RLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR  157 (487)
T ss_pred             eEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence            9999999999999999543  22233446789999999999986 35788999999999999998887668999999999


Q ss_pred             EEEECCCC-CEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118          174 TVAVSPDG-SLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       174 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      +.+|+|.. ..+++||.||+|++||.+.. ..+.+++++.+|.++.+-|.|..++++..+.+++||+-+|...-.     
T Consensus       158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~-----  232 (487)
T KOG0310|consen  158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT-----  232 (487)
T ss_pred             eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh-----
Confidence            99999955 47899999999999999977 788899999999999999999999999999999999985543211     


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                                    ....|.-.++++++..++..|++|+-||.|++||+++|
T Consensus       233 --------------~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  233 --------------SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             --------------hhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence                          12235556788999999999999999999999999887

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.2e-29  Score=194.97  Aligned_cols=277  Identities=19%  Similarity=0.303  Sum_probs=204.4

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCc---cccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE---KTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +..|+.++-+.+|+|++ .++||||.|..|+|.|.+.+-   +.........+.+...|+        .+-.|.++|+++
T Consensus       108 lt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--------TlYDH~devn~l  178 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--------TLYDHVDEVNDL  178 (430)
T ss_pred             EeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--------ehhhccCcccce
Confidence            56788899999999986 699999999999999986321   100111111111212222        345799999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-  165 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-  165 (303)
                      .|+|....|++++.|++|++||+.....+. ++. -....++.++.|+|.+  .+++.|..--.+++||+++.++...- 
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecC
Confidence            999999999999999999999985432211 111 1234679999999987  46888888899999999988765432 


Q ss_pred             --cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCC
Q 048118          166 --AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALCFSPNRYWL-CAATEQSIKIWDLE  239 (303)
Q Consensus       166 --~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~  239 (303)
                        ..|.+.|+++.+++.+++.++++.||.|++||--+++++.++.   .++.|.+..|..++.++ .++.|..+++|.+.
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence              3588999999999999999999999999999999888887773   46789999999998654 56679999999999


Q ss_pred             CCceeeeeeecccccc-----------------------------ccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          240 SKSIVEDLKVDLKTEA-----------------------------EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      +++.+..+.-.-....                             .............+|+..+..+.-||.++-+++||
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs  415 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS  415 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec
Confidence            9988776542100000                             00000111112235666677788899999999999


Q ss_pred             cCCeEEEEe
Q 048118          291 TDGVIRVWG  299 (303)
Q Consensus       291 ~Dg~v~~w~  299 (303)
                      .|-+.|+|-
T Consensus       416 dD~raRFWy  424 (430)
T KOG0640|consen  416 DDFRARFWY  424 (430)
T ss_pred             ccceeeeee
Confidence            999999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.2e-30  Score=203.47  Aligned_cols=242  Identities=18%  Similarity=0.337  Sum_probs=193.0

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ++.|.||.+-|.+++=+|.....++||+.||.|++||++..+..                       ..+.+|.+.|..|
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-----------------------~~f~AH~G~V~Gi  115 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-----------------------RTFKAHEGLVRGI  115 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-----------------------heeecccCceeeE
Confidence            45689999999999999987788999999999999999764421                       1356788899999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      ++..  ..+++++.|++|+.|...+.....+.    ....+..+..+..  ...++++|.  .|.|||..-..++..+..
T Consensus       116 ~v~~--~~~~tvgdDKtvK~wk~~~~p~~til----g~s~~~gIdh~~~--~~~FaTcGe--~i~IWD~~R~~Pv~smsw  185 (433)
T KOG0268|consen  116 CVTQ--TSFFTVGDDKTVKQWKIDGPPLHTIL----GKSVYLGIDHHRK--NSVFATCGE--QIDIWDEQRDNPVSSMSW  185 (433)
T ss_pred             Eecc--cceEEecCCcceeeeeccCCcceeee----ccccccccccccc--cccccccCc--eeeecccccCCccceeec
Confidence            8887  67899999999999987664332221    1233444544432  245777765  499999988888888888


Q ss_pred             CCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceee
Q 048118          168 HTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      ..+.|.++.|+|... .|++++.|+.|.++|++.+.++..+......+.++|+|+.. +.++..|..++.||++.-+.  
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--  263 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--  263 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcc--
Confidence            888999999999654 67888899999999999999999888888889999999765 44556789999999875321  


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                       +....++|...+++++|||.|.-+++||.|.+||+|.+.
T Consensus       264 -----------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  264 -----------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             -----------------cchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence                             122346677888999999999999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.8e-29  Score=212.11  Aligned_cols=254  Identities=24%  Similarity=0.401  Sum_probs=208.1

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      +.|.+...+-|-.+.|..+.|-.+..+++|.+++.+.+|+++...+.-.                        -+.||+.
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------------------------ii~GH~e  366 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------------------------IIPGHTE  366 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------------------------EEeCchh
Confidence            5678888899999999999876666789999999999999977543211                        2468999


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .|.+++...+|-+|+||+.|+++++|.+...+.  ........|+..|.+++++..+ ...|++++.|.++++|++...+
T Consensus       367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~  445 (775)
T KOG0319|consen  367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSK  445 (775)
T ss_pred             heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCcc
Confidence            999999777788999999999999998743332  2234556799999999997655 4689999999999999986511


Q ss_pred             ---------eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEE-Ec
Q 048118          161 ---------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCA-AT  229 (303)
Q Consensus       161 ---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~  229 (303)
                               +..+...|...|++++++|+..++||||.|++.++|+++..+.+.++.. .-.+.++.|+|..+++++ +.
T Consensus       446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg  525 (775)
T KOG0319|consen  446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG  525 (775)
T ss_pred             cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC
Confidence                     1223457889999999999999999999999999999998777777753 457999999998876655 56


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |..|+||.+.+.+.++.                    +.+|...+....|-.+++.|++++.||.+++|++.
T Consensus       526 D~TvKIW~is~fSClkT--------------------~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  526 DKTVKIWSISTFSCLKT--------------------FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             CceEEEEEeccceeeee--------------------ecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99999999998877654                    45566677888999999999999999999999984

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.8e-30  Score=203.29  Aligned_cols=243  Identities=26%  Similarity=0.454  Sum_probs=187.6

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      -+.|..|+|++ .++++||.||-|.+|+...+...               .++.+..+..+.-+..+|.|++|+.+.+.+
T Consensus       215 h~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlr---------------KDLkYQAqd~fMMmd~aVlci~FSRDsEMl  278 (508)
T KOG0275|consen  215 HVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLR---------------KDLKYQAQDNFMMMDDAVLCISFSRDSEML  278 (508)
T ss_pred             chhheeeCCCC-ceEeeccccceeeeehhccchhh---------------hhhhhhhhcceeecccceEEEeecccHHHh
Confidence            36788899975 79999999999999998654211               112233445667789999999999999999


Q ss_pred             EEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEE
Q 048118           97 VSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV  175 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  175 (303)
                      |+|+.||.|++|.+.. .+...+  ..+|+..|.|+.|+.++.  .+++++.|.++++.-++.+++..++++|...|+..
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA  354 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHHhcCccccccce
Confidence            9999999999999753 333222  247888999999999874  58899999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEE-------------------------------------
Q 048118          176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHA-------------------------------------  215 (303)
Q Consensus       176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~-------------------------------------  215 (303)
                      .|.++|.++++++.||+|++|+.++.+++.++..   ..+|++                                     
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk  434 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK  434 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence            9999999999999999999999988766555421   112222                                     


Q ss_pred             --------EEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118          216 --------LCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL  286 (303)
Q Consensus       216 --------~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  286 (303)
                              ++.||.|.|+ +.+.|+.+++|...+|++...+.++                    .-.+..++-+|..+.|
T Consensus       435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh--------------------EkdvIGl~HHPHqNll  494 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH--------------------EKDVIGLTHHPHQNLL  494 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc--------------------cccccccccCcccchh
Confidence                    3445666554 3455666777776666665554432                    2223456678999999


Q ss_pred             EEeecCCeEEEEe
Q 048118          287 FSGYTDGVIRVWG  299 (303)
Q Consensus       287 ~~gs~Dg~v~~w~  299 (303)
                      |+-+.||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999995

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.1e-28  Score=200.49  Aligned_cols=269  Identities=20%  Similarity=0.349  Sum_probs=205.5

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      --|.+.|+.+..-|.++.++||.+..+.+.|||..+........            . ...|+-++.+|+++-++++|++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------------~-~~~Pdl~L~gH~~eg~glsWn~  187 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------------G-ECRPDLRLKGHEKEGYGLSWNR  187 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------------c-cCCCceEEEeeccccccccccc
Confidence            34889999999999999999999999999999997643221100            0 2335557889999889999998


Q ss_pred             CC-CEEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--CceeEE
Q 048118           92 DN-RQIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS--NCKLRA  163 (303)
Q Consensus        92 ~~-~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~--~~~~~~  163 (303)
                      .. .++++++.|+.|++||+.....     ........|...|..++|+|-. ...|++++.|+.+.|||.+  +.++..
T Consensus       188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~~~~~~  266 (422)
T KOG0264|consen  188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNTSKPSH  266 (422)
T ss_pred             ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCCCCCCcc
Confidence            64 5899999999999999854322     2233456789999999999965 3578999999999999999  566777


Q ss_pred             EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCCC-eEEEE-EcCCcEEEEeC
Q 048118          164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPNR-YWLCA-ATEQSIKIWDL  238 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~  238 (303)
                      ...+|.+++++++|+| ++..||+||.|++|.+||+|.- ++++++. +...|.++.|||+. .+||+ ++|+.+.+||+
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            7889999999999999 5567899999999999999864 3566664 46789999999985 45554 56999999998


Q ss_pred             CCCceeeeeeecccccccccc-CccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          239 ESKSIVEDLKVDLKTEAEKSE-ATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                      ..-.....       ...... ..-..+.-.+|...+..++|+|..+ .|++.+.|+.+.||..+
T Consensus       347 s~ig~eq~-------~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  347 SRIGEEQS-------PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccC-------hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            54221110       000001 1112244567788899999999988 57899999999999865

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.5e-28  Score=194.48  Aligned_cols=251  Identities=29%  Similarity=0.453  Sum_probs=194.2

Q ss_pred             cccccccccceeeeecCCCC--CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            8 KGTMRAHTDMVTAIATPIDN--SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~--~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ...+.||.++|..+++...+  ...|+++|.|.++++|.++..+.....                   .....||+..|-
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~-------------------~~~~~GHk~~V~  197 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA-------------------LKVCRGHKRSVD  197 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH-------------------HhHhccccccee
Confidence            44688999999977765433  246999999999999998765432110                   112348999999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCce-----------------------eeeeecCCCCccceEEEEEcCCCCCCEE
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGEC-----------------------KYTIQEGDAHTEWVSCVRFSPNTLQPTI  142 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~  142 (303)
                      +++..++|.++++|+.|.+|++|+...+.                       +..+....+|..+|.++.|.+.   ..+
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~  274 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVI  274 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---Cce
Confidence            99999999999999999999999831110                       0112233578999999999884   368


Q ss_pred             EEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEe-cCCCeEEEEEE
Q 048118          143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSL-DAGAVIHALCF  218 (303)
Q Consensus       143 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~  218 (303)
                      .++++|-+|+.||+.++....++.+ +..++++..+|..++|++|+.|..+++||.+++..   .+++ .+...|.++.|
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw  353 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW  353 (423)
T ss_pred             EeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence            9999999999999999988877775 45789999999999999999999999999987642   2233 34678999999


Q ss_pred             cCCC--eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          219 SPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       219 s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      +|..  +++.++.|+.+++||+|+.+-                   +.+.+.+|.-.+.++.|+ ++.++++|+.|.+++
T Consensus       354 sp~~~~~~~S~S~D~t~klWDvRS~k~-------------------plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  354 SPTNEFQLVSGSYDNTVKLWDVRSTKA-------------------PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             CCCCceEEEEEecCCeEEEEEeccCCC-------------------cceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence            9975  344556799999999987641                   223455566667889997 567999999999999


Q ss_pred             EEecc
Q 048118          297 VWGIG  301 (303)
Q Consensus       297 ~w~~~  301 (303)
                      ++.-.
T Consensus       414 i~~~~  418 (423)
T KOG0313|consen  414 IFKGS  418 (423)
T ss_pred             Eeccc
Confidence            98643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.2e-29  Score=186.62  Aligned_cols=252  Identities=20%  Similarity=0.312  Sum_probs=189.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ...|.+.|..+..+.-+ .+||||+.|++|||+...+..+..  ..                  -.+.||+++|+.++|.
T Consensus         7 dt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~--ll------------------~~L~Gh~GPVwqv~wa   65 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSK--LL------------------AELTGHSGPVWKVAWA   65 (299)
T ss_pred             hhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCce--ee------------------eEecCCCCCeeEEeec
Confidence            56799999988877655 579999999999999886543211  11                  1467899999999998


Q ss_pred             e--CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---eeEEEE
Q 048118           91 I--DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC---KLRATL  165 (303)
Q Consensus        91 ~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~---~~~~~~  165 (303)
                      .  .|.+||+|+.|+.|.||...+...........|...|++++|.|......|++++.||.|.+.+.+..   ......
T Consensus        66 hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   66 HPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             ccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence            6  69999999999999999876543323333456888899999999877778999999999999887653   122335


Q ss_pred             cCCCCCeeEEEECCC---C-----------CEEEEEeCCCeEEEEeCCCCceE--EEe-cCCCeEEEEEEcCCC-----e
Q 048118          166 AGHTGYVNTVAVSPD---G-----------SLCASGGKDGVILLWDLAEGKRL--YSL-DAGAVIHALCFSPNR-----Y  223 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~v~iwd~~~~~~~--~~~-~~~~~v~~~~~s~~~-----~  223 (303)
                      ..|.-.|++++|.|.   |           +.|++|+.|..|+||+...++-+  .++ .+...|+.++|.|.-     .
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence            678889999999886   4           56999999999999999876422  122 245789999999962     3


Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          224 WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       224 ~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +..++.||++.||..+..  ....+.               ..++.....+++++||+.|..|++++.|+.|.+|.-
T Consensus       226 iAS~SqDg~viIwt~~~e--~e~wk~---------------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  226 IASCSQDGTVIIWTKDEE--YEPWKK---------------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             eEEecCCCcEEEEEecCc--cCcccc---------------cccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            445567999999986521  111110               011222345688999999999999999999999964

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.9e-28  Score=187.23  Aligned_cols=268  Identities=19%  Similarity=0.357  Sum_probs=185.5

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      -.+|.+.|+++.|++.+ +.+||||.|++++|||..+...+.                   .-+..++.|.+.|..+.|.
T Consensus         9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W-------------------~~Ts~Wrah~~Si~rV~WA   68 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTW-------------------SCTSSWRAHDGSIWRVVWA   68 (361)
T ss_pred             ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCce-------------------EEeeeEEecCCcEEEEEec
Confidence            35789999999999875 679999999999999975443221                   1123577899999999997


Q ss_pred             e--CCCEEEEEeCCCcEEEEecCCc-------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---
Q 048118           91 I--DNRQIVSASRDRTIKLWNTLGE-------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---  158 (303)
Q Consensus        91 ~--~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~---  158 (303)
                      +  -|+.+|+|+.|++++||+....       ..............|..++|.|......+++++.||++|||+.-+   
T Consensus        69 hPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n  148 (361)
T KOG2445|consen   69 HPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN  148 (361)
T ss_pred             CccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence            5  4899999999999999975211       111111112234568999999987667899999999999997532   


Q ss_pred             ---ceeEEEEc-------CCCCCeeEEEECCC---CCEEEEEeCC-----CeEEEEeCCCCc-eEE---Ee-cCCCeEEE
Q 048118          159 ---CKLRATLA-------GHTGYVNTVAVSPD---GSLCASGGKD-----GVILLWDLAEGK-RLY---SL-DAGAVIHA  215 (303)
Q Consensus       159 ---~~~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----~~v~iwd~~~~~-~~~---~~-~~~~~v~~  215 (303)
                         ..+..+++       .+..+..|+.|+|.   .++|++|+.+     +.++||...... ...   ++ ....+|++
T Consensus       149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d  228 (361)
T KOG2445|consen  149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD  228 (361)
T ss_pred             cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence               23333333       35668889999984   3578888765     488999875443 222   22 45689999


Q ss_pred             EEEcCC-C---eEEEEE-cCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          216 LCFSPN-R---YWLCAA-TEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       216 ~~~s~~-~---~~l~~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      ++|.|. |   .++|++ .|| |+||+++... .+.+-.+ ..+.............+.+|+..++.+.|+..|..|++.
T Consensus       229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~-~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt  306 (361)
T KOG2445|consen  229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV-LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST  306 (361)
T ss_pred             eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc-cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence            999997 2   455554 467 9999986421 1100000 000000001111233467788889999999999999999


Q ss_pred             ecCCeEEEEec
Q 048118          290 YTDGVIRVWGI  300 (303)
Q Consensus       290 s~Dg~v~~w~~  300 (303)
                      +.||+||+|.-
T Consensus       307 GdDG~VRLWka  317 (361)
T KOG2445|consen  307 GDDGCVRLWKA  317 (361)
T ss_pred             CCCceeeehhh
Confidence            99999999963

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-28  Score=194.72  Aligned_cols=240  Identities=28%  Similarity=0.472  Sum_probs=187.8

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      |.+=|.+|...   ++.++||+.||++++|+......                        .++.||+++|.+++|.-..
T Consensus       104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~------------------------~~~~Ght~~ik~v~~v~~n  156 (423)
T KOG0313|consen  104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSI------------------------KTIVGHTGPIKSVAWVIKN  156 (423)
T ss_pred             chhhhhhhccc---CceEEEeecCCeeEEEecCCceE------------------------EEEecCCcceeeeEEEecC
Confidence            45556666554   46899999999999999863221                        1356889999888876543


Q ss_pred             C---EEEEEeCCCcEEEEecCCceee--eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC----------
Q 048118           94 R---QIVSASRDRTIKLWNTLGECKY--TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN----------  158 (303)
Q Consensus        94 ~---~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~----------  158 (303)
                      .   .|++++.|.++++|........  ..+...+|...|.+++..+++  ..+++|++|.+|.+|+...          
T Consensus       157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccc
Confidence            3   5999999999999986533221  222334789999999988876  5799999999999998210          


Q ss_pred             ---------------ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe
Q 048118          159 ---------------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY  223 (303)
Q Consensus       159 ---------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~  223 (303)
                                     ..+..++.+|.++|.++.|++ ...+.+++.|.+|+.||+.++..+.++.......++.++|...
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc
Confidence                           123456889999999999988 6688999999999999999999998888889999999999865


Q ss_pred             EE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEec
Q 048118          224 WL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGI  300 (303)
Q Consensus       224 ~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~  300 (303)
                      ++ ++++|..|++||.+++.-.                 .....+.+|..++.++.|+|... +|++|+.||++++||+
T Consensus       314 Ll~~gssdr~irl~DPR~~~gs-----------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  314 LLASGSSDRHIRLWDPRTGDGS-----------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             eeeecCCCCceeecCCCCCCCc-----------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence            55 5567999999999876311                 11234566777899999999876 6889999999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=198.68  Aligned_cols=248  Identities=29%  Similarity=0.454  Sum_probs=192.7

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .....|.||.++|.|+.++   .+.+++||.|.+|++||.+.++..                       ..+.+|...|.
T Consensus       228 ~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l-----------------------~tlihHceaVL  281 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL-----------------------NTLIHHCEAVL  281 (499)
T ss_pred             HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh-----------------------hHHhhhcceeE
Confidence            3456789999999999986   358999999999999999866532                       24567899999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCceeeee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      .+.|+.  .+++|++.|.++.+||......... ....+|.+.|+.+.|+.    .++++++.|.+|++|+..+.+++.+
T Consensus       282 hlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----kyIVsASgDRTikvW~~st~efvRt  355 (499)
T KOG0281|consen  282 HLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVSASGDRTIKVWSTSTCEFVRT  355 (499)
T ss_pred             EEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----ceEEEecCCceEEEEeccceeeehh
Confidence            999874  4899999999999999765432221 22346888899999874    3899999999999999999999999


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~  243 (303)
                      +.+|...|-++.+  .++++++|+.|.+|++||+..|.++..++. ...|+++.|. ++.++.++.||+|++||+.++.-
T Consensus       356 l~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  356 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             hhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-CceeeeccccceEEEEecccccC
Confidence            9999998877765  588999999999999999999998887754 5689999996 56677788899999999976532


Q ss_pred             eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      -....         .  +.-..++..+...+..+.|  |...+++++.|-+|.+||.-
T Consensus       433 pra~~---------~--~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  433 PRAPA---------S--TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             Ccccc---------c--chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence            11100         0  0001122234445666776  45689999999999999964

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=2.8e-28  Score=188.74  Aligned_cols=206  Identities=27%  Similarity=0.460  Sum_probs=176.7

Q ss_pred             CceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           75 GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        75 ~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      ..+.+|+++|+.+.|+|+|..|+||+.|..|.+|+..+++..... .+.|+..|..+.|.+++  ..+++++.|..++.|
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkgHsgAVM~l~~~~d~--s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKGHSGAVMELHGMRDG--SHILSCGTDKTVRGW  117 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee-eccccceeEeeeeccCC--CEEEEecCCceEEEE
Confidence            456789999999999999999999999999999997666543322 24799999999999986  579999999999999


Q ss_pred             ECCCceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEEEEEcCCc
Q 048118          155 NLSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWLCAATEQS  232 (303)
Q Consensus       155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~  232 (303)
                      |.++++....+++|..-++++.-..-|. ++.+++.|+++++||+++...++++....++.++.|...+ +.+.++-|+.
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            9999999999999999999887444444 5678889999999999999999999888999999999875 6677778999


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                      |++||++..+....                    +++|.-.++.+..+|+|.++.+-+.|.++++||+--|
T Consensus       198 ikvWd~r~~d~~~~--------------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYT--------------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             eeeeccccCcceEE--------------------eecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence            99999988765443                    3455566788999999999999999999999998543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=4.6e-28  Score=183.09  Aligned_cols=205  Identities=22%  Similarity=0.370  Sum_probs=166.9

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .+.|+.+...|+++.||+++. ..||+||+.+.....+...+.|+..|.++.|..++  ..+.+|+.||+++|||++...
T Consensus        40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg--rWMyTgseDgt~kIWdlR~~~  116 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG--RWMYTGSEDGTVKIWDLRSLS  116 (311)
T ss_pred             ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecC--eEEEecCCCceEEEEeccCcc
Confidence            457999999999999998877 67999998754333455557888889999999886  479999999999999999866


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCeEEEEE-cCCcEEEEe
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAA-TEQSIKIWD  237 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd  237 (303)
                      +.+.++ |..+|+++..+|+...|++|..+|.|++||+.+......+  +....++++...|+|.++++. ..|++++|+
T Consensus       117 ~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~  195 (311)
T KOG0315|consen  117 CQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWR  195 (311)
T ss_pred             cchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence            655555 6789999999999999999999999999999877554433  335689999999999877666 469999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                      +-+......+.              +...++.|..++..+.+|||+++||++|.|.++++|++..+
T Consensus       196 l~~~~~~s~l~--------------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  196 LLNHQTASELE--------------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ccCCCccccce--------------EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            97654433322              22336778888999999999999999999999999998653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-27  Score=202.71  Aligned_cols=238  Identities=25%  Similarity=0.417  Sum_probs=197.9

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceec-ccCCEEEEEEeeCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVG-HTKDVLSVAFSIDN   93 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-h~~~i~~i~~~~~~   93 (303)
                      .+.|+++.|++++ .+|+.|-.+|.+.|||.....+..                       .+.+ |...|-+++|+  +
T Consensus       217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~-----------------------~~~~~h~~rvg~laW~--~  270 (484)
T KOG0305|consen  217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTR-----------------------TLRGSHASRVGSLAWN--S  270 (484)
T ss_pred             CCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccc-----------------------cccCCcCceeEEEecc--C
Confidence            6889999999875 689999999999999987543221                       2234 88899999998  6


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN  173 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  173 (303)
                      ..+.+|+.|+.|..+|+.......- ....|...|..++|++++  ..+++|+.|+.+.|||....++...+..|...|.
T Consensus       271 ~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  271 SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             ceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC--CeeccCCCccceEeccCCCccccEEEeccceeee
Confidence            6899999999999999854322111 245688899999999986  5799999999999999988888889999999999


Q ss_pred             EEEECC-CCCEEEEEe--CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE---cCCcEEEEeCCCCceeeee
Q 048118          174 TVAVSP-DGSLCASGG--KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA---TEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       174 ~~~~~~-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~~i~iwd~~~~~~~~~~  247 (303)
                      .++|+| ...+||+|+  .|++|++||..++..+..+..++.|.++.|++...-++++   .++.|.||+..+.+.+.  
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--  425 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--  425 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee--
Confidence            999999 556888875  6999999999999999999999999999999986433332   46789999987644332  


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                        .+.+|...+..+++||||..+++|+.|.++++|++-
T Consensus       426 ------------------~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  426 ------------------ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             ------------------eecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence                              356677888999999999999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.3e-27  Score=206.50  Aligned_cols=206  Identities=18%  Similarity=0.248  Sum_probs=151.1

Q ss_pred             ceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCcee------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118           76 QFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECK------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD  148 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d  148 (303)
                      .+.+|.+.|.+++|+|+ +.+|++|+.|+.|++|++.....      ........|...|.+++|+|++ ...+++++.|
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g-~~iLaSgS~D  147 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN-YYIMCSSGFD  147 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC-CeEEEEEeCC
Confidence            35689999999999997 78999999999999999853211      0111234678889999999975 3456789999


Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-Ce-----EEEEEEcCCC
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AV-----IHALCFSPNR  222 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~-----v~~~~~s~~~  222 (303)
                      +.|++||+++++....+. |...|.+++|+|+|.+|++++.|++|++||+++++.+.++... ..     +....|++++
T Consensus       148 gtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             CeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            999999999888766665 5578999999999999999999999999999999888776432 22     2223456776


Q ss_pred             e-EEEEEcCC----cEEEEeCCC-CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          223 Y-WLCAATEQ----SIKIWDLES-KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       223 ~-~l~~~~~~----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      . +++++.++    .|++||+++ .+.+.....+.                  ....+.-...++++.++++|+.|++|+
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~------------------~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN------------------ASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC------------------CccceEEeeeCCCCCEEEEEECCCeEE
Confidence            5 45555553    699999985 33333222110                  111111122355688999999999999


Q ss_pred             EEecc
Q 048118          297 VWGIG  301 (303)
Q Consensus       297 ~w~~~  301 (303)
                      +|++.
T Consensus       289 ~~e~~  293 (568)
T PTZ00420        289 YYQHS  293 (568)
T ss_pred             EEEcc
Confidence            99974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.3e-28  Score=203.28  Aligned_cols=241  Identities=27%  Similarity=0.366  Sum_probs=197.3

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ++-...+|-+..|-+ ..+.+++||.|..|++|+.++.++.                       ..|.+|.+-|.+++.+
T Consensus        51 feV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV-----------------------~~FeAH~DyIR~iavH  106 (794)
T KOG0276|consen   51 FEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV-----------------------KTFEAHSDYIRSIAVH  106 (794)
T ss_pred             eeecccchhhheeee-ccceEEEecCCceEEEEecccceee-----------------------EEeeccccceeeeeec
Confidence            333344455545543 4689999999999999999876643                       1467899999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      |...+++|++.|-.|++|+..+. ....+...+|+..|.+++|+|.+ .+.+++++-|++|++|.+....+..++.+|..
T Consensus       107 Pt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek  184 (794)
T KOG0276|consen  107 PTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEK  184 (794)
T ss_pred             CCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCC-ccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence            99999999999999999998654 33445567899999999999986 46899999999999999988888999999999


Q ss_pred             CeeEEEECCCC--CEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeee
Q 048118          171 YVNTVAVSPDG--SLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       171 ~i~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~  246 (303)
                      .|+++.+-+.|  .+|++|+.|.+++|||.++.+++.++. +...|..++|+|.-.++ .++.||++++|+..+.++.+.
T Consensus       185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence            99999998744  699999999999999999999999886 45789999999987655 456799999999988777655


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      +...                    ...+++++-.+.++.+++|.+.|.+.+
T Consensus       265 Ln~g--------------------leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  265 LNYG--------------------LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhcC--------------------CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            4432                    234567887788888999998887743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=5.3e-29  Score=199.91  Aligned_cols=200  Identities=30%  Similarity=0.471  Sum_probs=169.1

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      .+|..+|.++.|++++.++++|+.+|.|++|+..-.....+  ...|.+.|++++|+|++  ..|++++.||+|+|||..
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~--~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII--QAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh--hHhhhhhhheeccCCCC--ceeEEecCCCeEEEEecc
Confidence            48999999999999999999999999999999754322222  23455889999999975  579999999999999998


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEE-EcCCcEEE
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCA-ATEQSIKI  235 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~i  235 (303)
                      ..+....+.+|.-.|.++.|+|...++++++.|..|++||.++++++.++. +...|..+.|+|++.+|++ +.|..+++
T Consensus       211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence            888778889999999999999999999999999999999999999998874 4678999999999987755 56999999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCeEEEEecc
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~v~~w~~~  301 (303)
                      ||+++-+.+.                    .+++|.-.++++.|+|-. .+|.+|+.||.|..|.+.
T Consensus       291 ~DiR~mkEl~--------------------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  291 FDIRTMKELF--------------------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             EehhHhHHHH--------------------HhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence            9998543322                    234556667889999975 488899999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=2.5e-29  Score=198.36  Aligned_cols=227  Identities=26%  Similarity=0.466  Sum_probs=179.4

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      +.|+|+.++   ++.+++|..|.+|++||.+..+-.                       ..+.||++.|.|+.|..  +.
T Consensus       198 kgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~-----------------------~~L~GHtGSVLCLqyd~--rv  249 (499)
T KOG0281|consen  198 KGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECL-----------------------KILTGHTGSVLCLQYDE--RV  249 (499)
T ss_pred             CceEEEEec---chhhhcccccCceEEeccccHHHH-----------------------HhhhcCCCcEEeeeccc--eE
Confidence            568999885   467999999999999998653211                       13568999999998864  48


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcCCCCCe
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAGHTGYV  172 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~i  172 (303)
                      +++|+.|.+|++||....+-  +...-.|.+.|..+.|+.    .++++++.|.++.+||+....   +...+.+|...|
T Consensus       250 iisGSSDsTvrvWDv~tge~--l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  250 IVSGSSDSTVRVWDVNTGEP--LNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  323 (499)
T ss_pred             EEecCCCceEEEEeccCCch--hhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence            99999999999999865432  222235778899999985    479999999999999996543   445678999999


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118          173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      +.+.|+  .+++++++.|++|++|+..+.+.+.++... -.|-++.+. +..++.+++|..|++||++.|..+..     
T Consensus       324 NvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRv-----  395 (499)
T KOG0281|consen  324 NVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRV-----  395 (499)
T ss_pred             eeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-CeEEEecCCCceEEEEeccccHHHHH-----
Confidence            999986  569999999999999999999998887643 345566653 45555667899999999999877653     


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                     +++|...+..+.|.  .+.+++|..||+|++||+.
T Consensus       396 ---------------LeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  396 ---------------LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             ---------------HhchHHhhhheeec--CceeeeccccceEEEEecc
Confidence                           34556666778885  5789999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.4e-27  Score=191.85  Aligned_cols=247  Identities=22%  Similarity=0.365  Sum_probs=193.7

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ++.+++||...|+.+.++|.. +.+++++.|..|++|........                       .....|.++|+.
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~-----------------------~~~~~h~~~V~~  308 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEP-----------------------TSSRPHEEPVTG  308 (506)
T ss_pred             hhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCc-----------------------ccccccccccee
Confidence            355799999999999999875 57999999999999976432100                       023469999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      +..+|.|+||++++.|+.....|......+.....+...-.+.+..|||++  ..|.+|..||.++|||++.+.....|.
T Consensus       309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCccccccCC
Confidence            999999999999999999999888765554444333223357899999997  578899999999999999998889999


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--CeEEEEEEcCCCeEEEEEcCCcEEEEeCC----C
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRYWLCAATEQSIKIWDLE----S  240 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~i~iwd~~----~  240 (303)
                      +|.++|..++|+.+|-+|+++++|+.|++||+|..+...++...  ..+.+++|.+.|.+|+.+ ...+++|-..    +
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKS  465 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEeccccc
Confidence            99999999999999999999999999999999988776666543  469999999999887766 3345444432    1


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ...+..                    +..+....+.+.|.....+++++|.|..++++.+
T Consensus       466 W~~~~~--------------------~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKE--------------------LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeeh--------------------hhhcccccceeeecccceEEeeccchhheEEeec
Confidence            111111                    1222223456788888899999999999998864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=177.43  Aligned_cols=205  Identities=26%  Similarity=0.438  Sum_probs=163.2

Q ss_pred             ceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceeee--eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118           76 QFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKYT--IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK  152 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~  152 (303)
                      .+.+|++++..++|+|. |..||||+.|+.||+|+..+...+.  ....+.|+..|++++|+|.+  .++++++.|.++.
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g--~~La~aSFD~t~~   86 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG--RYLASASFDATVV   86 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC--cEEEEeeccceEE
Confidence            34689999999999998 8899999999999999986321122  12335788999999999987  4899999999999


Q ss_pred             EEECCC--ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEec-CCCeEEEEEEcCCCeEEE
Q 048118          153 VWNLSN--CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSLD-AGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       153 iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-~~~~v~~~~~s~~~~~l~  226 (303)
                      ||.-..  .++..++.+|.+.|.+++|+++|++||++++|+.|-||.+..+..   +..++ +..-|..+.|+|..-+|+
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~  166 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF  166 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence            997653  468889999999999999999999999999999999999875443   33332 345688899999865555


Q ss_pred             -EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          227 -AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       227 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                       ++.|++|++|+-....-   ..              -...+.++...+++++|+|.|..|++++.|++|++|.
T Consensus       167 S~SYDnTIk~~~~~~ddd---W~--------------c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDEDDDD---WE--------------CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             EeccCCeEEEEeecCCCC---ee--------------EEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence             55699999998652110   00              0123455666788999999999999999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.7e-28  Score=191.04  Aligned_cols=225  Identities=29%  Similarity=0.472  Sum_probs=186.8

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC-----------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG-----------   75 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------   75 (303)
                      +...|+||.++|..|+|+..+ .++||+|.|-.+++||..+.    ..+.+.+.+|++.|+++.+-|.+           
T Consensus       142 ~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t  216 (406)
T KOG0295|consen  142 LERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT  216 (406)
T ss_pred             hhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHH----HHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence            466799999999999999765 79999999999999998742    23445566777778777765543           


Q ss_pred             -------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC----
Q 048118           76 -------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL----  138 (303)
Q Consensus        76 -------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  138 (303)
                                   +|.+|..=|..++.+.||.++++|+.|.+|++|-.....  .......|..+|.|++|-|...    
T Consensus       217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i  294 (406)
T KOG0295|consen  217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSI  294 (406)
T ss_pred             eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcch
Confidence                         245888889999999999999999999999999875431  1233456888899999987421    


Q ss_pred             ---------CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118          139 ---------QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       139 ---------~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  209 (303)
                               ..++.++++|++|++||+.++.++.++.+|.+.|..++|+|.|++|+++.+|+++++||++++++..++..
T Consensus       295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             hhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence                     13788999999999999999999999999999999999999999999999999999999999999888764


Q ss_pred             -CCeEEEEEEcCCCeEEEEEc-CCcEEEEeC
Q 048118          210 -GAVIHALCFSPNRYWLCAAT-EQSIKIWDL  238 (303)
Q Consensus       210 -~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~  238 (303)
                       ..-+.++.|..+..++++++ |..+++|.-
T Consensus       375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CcceeEEEecCCCCceEEeccccceeeeeec
Confidence             56789999988876666554 888999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-27  Score=179.60  Aligned_cols=200  Identities=23%  Similarity=0.387  Sum_probs=161.9

Q ss_pred             cCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           81 TKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        81 ~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      .+.+..++|++.. ..+++++.||++++||+.. ...++...+.|...|.++.|++... ..++++++|++|++|+..-.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r-~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRR-RIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccc-eeEEeeccCCceEeecCCCC
Confidence            4678899999875 5789999999999999643 3345555567888999999998653 46778899999999999888


Q ss_pred             eeEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCC-CeEEEE-EcCCcEEE
Q 048118          160 KLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPN-RYWLCA-ATEQSIKI  235 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~-~~~~~i~i  235 (303)
                      +.+.++.+|+..|...+|+| ..+.++++|.|+++++||++..-....+. +...+.++.|+.- ..+++. +.|+.|++
T Consensus       138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~  217 (311)
T KOG0277|consen  138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG  217 (311)
T ss_pred             cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence            89999999999999999999 56799999999999999998543322344 3468999999874 345544 46999999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCeEEEEecc
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~v~~w~~~  301 (303)
                      ||+++-+                   ++...+.+|...+..+.|||.. ..|+++|.|-++|+||..
T Consensus       218 wDir~~r-------------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  218 WDIRNLR-------------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             Eehhhcc-------------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence            9997643                   2345667888899999999985 489999999999999975

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=202.60  Aligned_cols=218  Identities=17%  Similarity=0.270  Sum_probs=165.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.+|.+.|++++|+|.++++|+||+.|++|++|++........        ...        +-..+.+|...|.+++|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--------~~~--------~l~~L~gH~~~V~~l~f  133 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--------ISD--------PIVHLQGHTKKVGIVSF  133 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--------cCc--------ceEEecCCCCcEEEEEe
Confidence            37899999999999995567999999999999999865321100        000        11235689999999999


Q ss_pred             eeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118           90 SIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        90 ~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~  168 (303)
                      +|++ .+|++++.|+.|++||+.....  ......|...|.+++|+|++  ..+++++.|+.|++||+++++...++.+|
T Consensus       134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        134 HPSAMNVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             CcCCCCEEEEEeCCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            9985 6899999999999999865432  22234577889999999986  57999999999999999999888888888


Q ss_pred             CCC-eeEEEECCCCCEEEEEe----CCCeEEEEeCCCCc-eEEEe--cCCCeEEEEEEcCCCeEEEE-E-cCCcEEEEeC
Q 048118          169 TGY-VNTVAVSPDGSLCASGG----KDGVILLWDLAEGK-RLYSL--DAGAVIHALCFSPNRYWLCA-A-TEQSIKIWDL  238 (303)
Q Consensus       169 ~~~-i~~~~~~~~~~~l~~~~----~d~~v~iwd~~~~~-~~~~~--~~~~~v~~~~~s~~~~~l~~-~-~~~~i~iwd~  238 (303)
                      .+. ...+.|.+++..+++++    .|++|++||+++.. ++...  .....+....|++++.++++ + .|+.|++||+
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            764 45677888877776654    47999999998654 33333  22345556678998866554 3 4899999999


Q ss_pred             CCCceeeee
Q 048118          239 ESKSIVEDL  247 (303)
Q Consensus       239 ~~~~~~~~~  247 (303)
                      ++++++...
T Consensus       290 ~~~~~~~~~  298 (493)
T PTZ00421        290 MNERLTFCS  298 (493)
T ss_pred             eCCceEEEe
Confidence            988766543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1e-26  Score=176.97  Aligned_cols=248  Identities=19%  Similarity=0.300  Sum_probs=192.8

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      +.+....++|.+.|-.++|+|..+++|+|++.|.+|++||+.......     .                   ...++.-
T Consensus        54 ~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~-----~-------------------i~~~~en  109 (313)
T KOG1407|consen   54 FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA-----R-------------------IETKGEN  109 (313)
T ss_pred             hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE-----E-------------------eeccCcc
Confidence            344556899999999999999999999999999999999986432211     0                   1123344


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      ..++|+|+|++++.++.|..|...|.......   ........+.-++|+.+.  ..++.-...|.|.|...-.-++++.
T Consensus       110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~---~~~~~~~e~ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~s  184 (313)
T KOG1407|consen  110 INITWSPDGEYIAVGNKDDRITFIDARTYKIV---NEEQFKFEVNEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQS  184 (313)
T ss_pred             eEEEEcCCCCEEEEecCcccEEEEEeccccee---ehhcccceeeeeeecCCC--CEEEEecCCceEEEEeccccccccc
Confidence            56899999999999999999999987543211   111223345667787432  3444445668999987777788999


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCc
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKS  242 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~  242 (303)
                      ++.|...+.++.|+|+|++||+|+.|..+.+||+..--+++.+. ..-+|+.++||-+|.+||+++ |..|-|-++++|.
T Consensus       185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            99999999999999999999999999999999998877777774 467899999999999998765 7889999999999


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC---------CeEEEEeccc
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD---------GVIRVWGIGR  302 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D---------g~v~~w~~~~  302 (303)
                      .+.+++..                     .....++|+|...+||-+++|         |.|++|++.+
T Consensus       265 ~~~eI~~~---------------------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  265 RVWEIPCE---------------------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             eEEEeecc---------------------CCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence            88776542                     112568999999999977664         6888887753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.1e-26  Score=199.36  Aligned_cols=261  Identities=24%  Similarity=0.385  Sum_probs=199.7

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC--------------
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG--------------   75 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------   75 (303)
                      ++-||+..|-+++++.++ ..+++| ..+.|+||+.....     +.+++...  .+.+..+.|..              
T Consensus       368 ~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~k-----ciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLK-----CIRTITCG--YILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcc-----eeEEeccc--cEEEEEecCCCceEEEeccCCceEE
Confidence            356899999999998543 344444 45799999986432     22222211  22222333322              


Q ss_pred             ----------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecC------CceeeeeecCC----CCccceEEEEEcC
Q 048118           76 ----------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL------GECKYTIQEGD----AHTEWVSCVRFSP  135 (303)
Q Consensus        76 ----------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~------~~~~~~~~~~~----~~~~~i~~~~~~~  135 (303)
                                ...+|.+.|+.++.+|+++.++|||+|++|++|+..      +..++.+....    .-++.|.|++++|
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence                      234899999999999999999999999999999852      11111111000    1134689999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEE
Q 048118          136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIH  214 (303)
Q Consensus       136 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~  214 (303)
                      ++  .+++.+--|.++++|-+.+.+..-.+.||.=||.++.++||++.++|||.|..|+||-+.-|.+-..+ .+...|.
T Consensus       519 dg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm  596 (888)
T KOG0306|consen  519 DG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM  596 (888)
T ss_pred             CC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence            97  57888999999999999999988899999999999999999999999999999999999988887665 4567899


Q ss_pred             EEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          215 ALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       215 ~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      ++.|-|... +++++.|+.|+-||-+.-+.+..+                    .+|..-+++++.+|+|.+++++|.|.
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L--------------------~~H~~ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL--------------------DGHHSEVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheee--------------------ccchheeeeeEEcCCCCeEEeccCCc
Confidence            999999865 556778999999998766555433                    34556678899999999999999999


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      .+|+|.-.
T Consensus       657 sIRlwE~t  664 (888)
T KOG0306|consen  657 SIRLWERT  664 (888)
T ss_pred             eeEeeecc
Confidence            99999643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-26  Score=180.83  Aligned_cols=242  Identities=19%  Similarity=0.314  Sum_probs=186.1

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ...+.+|..+|++++.+   ..++|+||.|.+|+|||+.+..+.                       +.+..|++.|+++
T Consensus        36 lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql-----------------------g~ll~HagsitaL   89 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL-----------------------GILLSHAGSITAL   89 (362)
T ss_pred             cccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh-----------------------cceeccccceEEE
Confidence            34688999999999986   469999999999999999754221                       2345689999999


Q ss_pred             EEeeCCC--EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           88 AFSIDNR--QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        88 ~~~~~~~--~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      .|.++-.  .|++|+.||.|.+|+...  .......++|...|+.++.||.+  ...++.+.|+.++.|++-.++.....
T Consensus        90 ~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   90 KFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             EecCCcchhheeeecCCCcEEEEEcCC--eEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceee
Confidence            9998765  899999999999999754  23445567888889999999986  35678899999999999877654433


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      +- ....+.+.|+|.|.+|+.++.+ .|-+|.+..-.....+.....+.++.|-..+.++++..++.|.+||......+.
T Consensus       166 ~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~  243 (362)
T KOG0294|consen  166 NL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLT  243 (362)
T ss_pred             cc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccce
Confidence            32 2344559999999999888765 688998876555444444556777888777888888899999999987643322


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEE--EcCCCCEEEEeecCCeEEEEecc
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN--WSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                          .+..|...+.++.  -.|++.+|+|+|+||.|++||+.
T Consensus       244 --------------------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  244 --------------------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             --------------------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence                                2334455555555  25788899999999999999984

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.3e-27  Score=191.60  Aligned_cols=272  Identities=26%  Similarity=0.414  Sum_probs=207.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeee--ecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRR--LTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      .+..|.-+|++++++|++ .+.++++.|++|.=|+...+.+........  +..|-.+     +.+ .. .+|...|.++
T Consensus       137 ~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~-----~k~-~r-~~h~keil~~  208 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP-----LKE-SR-KGHVKEILTL  208 (479)
T ss_pred             eeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCC-----CCc-cc-ccccceeEEE
Confidence            456788899999999875 589999999999999986543321111110  0001110     001 11 4899999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      +.+++|++|++|+.|..|.||+..+..  .++....|...|.+++|-...  ..+.+++.|++|++|++.....+.++.+
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhC
Confidence            999999999999999999999986533  233346788999999998654  3688999999999999988888888999


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      |.+.|.++....-++.+.+|+.|+++++|++.....+.-......+-+++|-.+..++.++.+|.|.+|++...+.+...
T Consensus       285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             CccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence            99999999887777788888899999999997655554445567889999988888999999999999999887776554


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +..........        --+++.++++++..|...++|+||.+|.||+|.+.
T Consensus       365 ~~AHgv~~~~~--------~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  365 RLAHGVIPELD--------PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eccccccCCcc--------ccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            43222111110        01223688999999999999999999999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.3e-27  Score=205.21  Aligned_cols=206  Identities=25%  Similarity=0.415  Sum_probs=167.6

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce------------------------------e-------------
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC------------------------------K-------------  115 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~------------------------------~-------------  115 (303)
                      +|.+.|+++.|+++|+|||+||.|+.|+||.+...+                              .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            899999999999999999999999999999753300                              0             


Q ss_pred             ---------------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC-
Q 048118          116 ---------------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-  179 (303)
Q Consensus       116 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-  179 (303)
                                     ..+....+|.+.|..+.|+.+   .+|++++.|.+||+|++...+++..|. |.+.|+|++|+| 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence                           001122367778889999986   479999999999999999999998887 899999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccc
Q 048118          180 DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKS  258 (303)
Q Consensus       180 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (303)
                      |.++|++|+.||.||||++...+.+.-.+....|++++|.|+|+..++ +.+|.+++|+.+.-++.....+......   
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K---  497 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK---  497 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc---
Confidence            788999999999999999998887776677889999999999976655 5599999999998877766555433211   


Q ss_pred             cCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEec
Q 048118          259 EATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGI  300 (303)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~  300 (303)
                              -..+. .|+.+.|.|... .|++.+.|..|||||+
T Consensus       498 --------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  498 --------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             --------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence                    01122 678899987654 6889999999999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-26  Score=180.63  Aligned_cols=270  Identities=23%  Similarity=0.390  Sum_probs=219.9

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------   76 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------   76 (303)
                      ..+++.+.||++-|+.++..... .++.|+|.|.+.+||.++.     +.++..+++|.+.|+++.+.+.+.        
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Es-----g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD  211 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLES-----GACLATYTGHTGSVNSIKFHNSGLLLLTASGD  211 (481)
T ss_pred             EeehhhhcccccceeeehhhcCC-cceeecccccceeEEeecc-----ccceeeecccccceeeEEeccccceEEEccCC
Confidence            35777899999999999988655 4899999999999999864     567888899999888888776542        


Q ss_pred             --------------------------------------------------------eecccCCEEEEEEeeCCCEEEEEe
Q 048118           77 --------------------------------------------------------FVGHTKDVLSVAFSIDNRQIVSAS  100 (303)
Q Consensus        77 --------------------------------------------------------~~~h~~~i~~i~~~~~~~~l~t~~  100 (303)
                                                                              +++|.+.|.++.|...|++++|++
T Consensus       212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS  291 (481)
T KOG0300|consen  212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS  291 (481)
T ss_pred             cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence                                                                    348899999999999999999999


Q ss_pred             CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEEEECC
Q 048118          101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTVAVSP  179 (303)
Q Consensus       101 ~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~  179 (303)
                      .|.+..+||....+.  +....+|....+.++-+|.  +..+++.+.|.+.++||++.. +.+..|++|.+.|+++.|.-
T Consensus       292 WDRTAnlwDVEtge~--v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~  367 (481)
T KOG0300|consen  292 WDRTANLWDVETGEV--VNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT  367 (481)
T ss_pred             ccccceeeeeccCce--eccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence            999999999865443  3333467777788888886  457889999999999999743 45678999999999999986


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEcC-CcEEEEeCCCCceeeeeeecccccccc
Q 048118          180 DGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLKTEAEK  257 (303)
Q Consensus       180 ~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (303)
                      + ..+++|+.|.+|++||+++. .++.++...++++.++.+..+.+++.-.| ..|++||+...++..            
T Consensus       368 d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR------------  434 (481)
T KOG0300|consen  368 D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR------------  434 (481)
T ss_pred             C-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc------------
Confidence            5 46789999999999999864 46788888899999999988888888765 579999997655422            


Q ss_pred             ccCccceeeccccceeEEEEEEcCCCC--EEEEeecCCeEEEEecc
Q 048118          258 SEATTATTTIKKKNIYCTSLNWSVDGS--TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l~~gs~Dg~v~~w~~~  301 (303)
                          .+....++|.--+.+.+|..+.+  .|++++-|..+.-|+++
T Consensus       435 ----lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  435 ----LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             ----CCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence                12233466777778899987654  69999999999999885

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.6e-27  Score=205.04  Aligned_cols=246  Identities=24%  Similarity=0.390  Sum_probs=193.8

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ++.-...|..++|+|..+ .++|+--.|.|++||..-     +.++                  .+|..|.++|..++|+
T Consensus         5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM-----~tli------------------~rFdeHdGpVRgv~FH   60 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM-----GTLI------------------DRFDEHDGPVRGVDFH   60 (1202)
T ss_pred             hhcccccccceecCCCCC-EEEEeecCceeeeehhhh-----hhHH------------------hhhhccCCccceeeec
Confidence            344446789999999864 899999999999999742     2222                  2466799999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      |.+.+|++||.|..|+||+....  ..+...-+|-+.|+.+.||+.  .+.+++++.|.+|+||+..+.+++..+.+|+-
T Consensus        61 ~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnH  136 (1202)
T KOG0292|consen   61 PTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNH  136 (1202)
T ss_pred             CCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence            99999999999999999997542  222333478899999999986  47899999999999999999999999999999


Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---------------------------EEEe--c-CCCeEEEEEEcC
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---------------------------LYSL--D-AGAVIHALCFSP  220 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---------------------------~~~~--~-~~~~v~~~~~s~  220 (303)
                      .|.|..|+|....++++|.|.+|||||+..-+.                           +...  . +.-.|+-++|+|
T Consensus       137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            999999999999999999999999999843110                           0000  0 122467789999


Q ss_pred             CCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          221 NRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       221 ~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .-.+++++ .|..|++|.+...+.=.   +               .+..+|...+.++-|+|...++++.|+|+++|+||
T Consensus       217 TlpliVSG~DDRqVKlWrmnetKaWE---v---------------DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNETKAWE---V---------------DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             CcceEEecCCcceeeEEEecccccee---e---------------hhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            87666554 57889999986544211   1               12345555678899999999999999999999999


Q ss_pred             ccc
Q 048118          300 IGR  302 (303)
Q Consensus       300 ~~~  302 (303)
                      ..+
T Consensus       279 m~k  281 (1202)
T KOG0292|consen  279 MTK  281 (1202)
T ss_pred             ccc
Confidence            854

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.7e-26  Score=178.56  Aligned_cols=263  Identities=24%  Similarity=0.328  Sum_probs=187.5

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc-ceeeeeecCCCcceEEEEeCCC------------
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSD------------   74 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~------------   74 (303)
                      ...|++|.+.|++++|+.++ .+|+|++.|++|++|+....+..- ...+..+...  -...+.++|+            
T Consensus        79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEccCC
Confidence            34699999999999999765 689999999999999986543211 1111111110  0112222222            


Q ss_pred             ------------Cce-------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceE
Q 048118           75 ------------GQF-------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS  129 (303)
Q Consensus        75 ------------~~~-------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~  129 (303)
                                  |.+             ..|+-.|..+-....+.++++++.|..|.+|++.+.....+.   .....-.
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id---tnq~~n~  232 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID---TNQSSNY  232 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeec---ccccccc
Confidence                        211             145567777878888899999999999999999765433322   2222234


Q ss_pred             EEEEcCCCCCCEEEEEeCCCcEEEEEC---CCce-----eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 048118          130 CVRFSPNTLQPTIVSASWDRTVKVWNL---SNCK-----LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG  201 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~---~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~  201 (303)
                      ..+.+|++  .++++++..--|++|..   +++.     ...++++|...|+.++|+|+.+.+++.|.||++++||..-.
T Consensus       233 ~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  233 DAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             ceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            57789987  46788888888999975   2222     34578899999999999999999999999999999997432


Q ss_pred             ----c---eEEEe-----cCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecc
Q 048118          202 ----K---RLYSL-----DAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIK  268 (303)
Q Consensus       202 ----~---~~~~~-----~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (303)
                          +   .+...     ..+ .++ .++.+|.+..|+++....|.+|..+.++.+..++                   .
T Consensus       311 Y~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-------------------~  370 (420)
T KOG2096|consen  311 YEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-------------------D  370 (420)
T ss_pred             EecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecCCceEEEEcccCccchhHH-------------------H
Confidence                2   12222     112 344 6899999999999999999999999887665442                   2


Q ss_pred             ccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          269 KKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       269 ~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .|...+.+++|+|+|+++++++ |..++++.
T Consensus       371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            2445578899999999999987 77777764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.5e-26  Score=173.72  Aligned_cols=243  Identities=23%  Similarity=0.356  Sum_probs=190.1

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .++.++.+|...|..++...++. .|++|+.|..+.+||.+.+...                       .++.+|.+.|+
T Consensus        50 ~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGkv~-----------------------Rr~rgH~aqVN  105 (307)
T KOG0316|consen   50 ALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGKVD-----------------------RRFRGHLAQVN  105 (307)
T ss_pred             ceeeeecCCCceeeecccccccc-ccccCCCCceEEEEEcccCeee-----------------------eecccccceee
Confidence            46678999999999988876664 6999999999999999764321                       25678999999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      .+.|+.+...+++|+.|.++++||.......+++..+.....|.++.....    .+++|+.||.+|.||++.+++...+
T Consensus       106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h----eIvaGS~DGtvRtydiR~G~l~sDy  181 (307)
T KOG0316|consen  106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH----EIVAGSVDGTVRTYDIRKGTLSSDY  181 (307)
T ss_pred             EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc----EEEeeccCCcEEEEEeecceeehhh
Confidence            999999999999999999999999877655566655556677888887643    6999999999999999999877666


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCC
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRY-WLCAATEQSIKIWDLESK  241 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~  241 (303)
                      -+  .+|++++|+++++..+.++.|+++++.|-.+|+.+.....   ...-..++++.... .+.++.||.+++||+...
T Consensus       182 ~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  182 FG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             cC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            55  5899999999999999999999999999999987766532   12233455665544 445667999999999988


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      .++..+...                   ..+-+.+++++|.-.-|+++..-+ +..|
T Consensus       260 ~~~sk~~~~-------------------~~v~v~dl~~hp~~~~f~~A~~~~-~~~~  296 (307)
T KOG0316|consen  260 TQISKLSVV-------------------STVIVTDLSCHPTMDDFITATGHG-DLFW  296 (307)
T ss_pred             eeeeeeccC-------------------CceeEEeeecccCccceeEecCCc-eece
Confidence            877665432                   123357899999877677666433 3344

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=3.2e-26  Score=200.31  Aligned_cols=243  Identities=28%  Similarity=0.496  Sum_probs=189.2

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD   83 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~   83 (303)
                      +..+...+.||.+.|.++.++- +++++++|+.|.++++||..+++     +...                  +.+|.+.
T Consensus       238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~-----C~~~------------------l~gh~st  293 (537)
T KOG0274|consen  238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE-----CTHS------------------LQGHTSS  293 (537)
T ss_pred             ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc-----EEEE------------------ecCCCce
Confidence            3344545999999999999974 67899999999999999976543     3332                  3467777


Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      |.++...  +.++++|+.|.+|++|++........  ..+|..+|.++..+.    .++++|+.|++|++||..+++++.
T Consensus       294 v~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~~----~~lvsgs~d~~v~VW~~~~~~cl~  365 (537)
T KOG0274|consen  294 VRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLDE----PLLVSGSYDGTVKVWDPRTGKCLK  365 (537)
T ss_pred             EEEEEcc--CceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEecC----CEEEEEecCceEEEEEhhhceeee
Confidence            7776654  34678899999999999874433222  234899999999882    489999999999999999999999


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~  241 (303)
                      ++.+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.. ...+..+.+. +..++..+.|+.|++||.+++
T Consensus       366 sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  366 SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccccEEEeecccC
Confidence            99999999999988765 88999999999999999999 88877754 3455555443 445666678999999999999


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+..+...                   +...+..+.+.  ...+++++.||.+++||+.
T Consensus       444 ~~~~~~~~~-------------------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  444 ECLRTLEGR-------------------HVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             ceeeeeccC-------------------CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            887765431                   11223444443  4689999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9e-26  Score=175.08  Aligned_cols=249  Identities=18%  Similarity=0.300  Sum_probs=185.4

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      .|.|.+|+|+|....+++.+|-|++||+|++.......+                     .....|.++|.+++|+.+|.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------------ka~~~~~~PvL~v~Wsddgs   85 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---------------------KAQQSHDGPVLDVCWSDDGS   85 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccc---------------------hhhhccCCCeEEEEEccCCc
Confidence            478999999997677888999999999999975321110                     12345889999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118           95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT  174 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  174 (303)
                      .+++|+.|+.+++||+.......+   ..|..+|.++.|-+......+++|++|.+|++||.+...+..++.- .+.+.+
T Consensus        86 kVf~g~~Dk~~k~wDL~S~Q~~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa  161 (347)
T KOG0647|consen   86 KVFSGGCDKQAKLWDLASGQVSQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA  161 (347)
T ss_pred             eEEeeccCCceEEEEccCCCeeee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee
Confidence            999999999999999977644333   4688899999998765455899999999999999998777766654 356666


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceEEE-e--cCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceeee--ee
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYS-L--DAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVED--LK  248 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~--~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~--~~  248 (303)
                      +..-  ..+++++..++.|.+++++.+...+. +  +..-.+++++..+++ .++.++-+|++.+..+..+....+  ++
T Consensus       162 ~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  162 ADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             hhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence            5542  35778888899999999987654332 2  234568888877775 345566799999998877533222  23


Q ss_pred             eccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          249 VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+.....           ..+.-..+++++|+|....|+|+++||+..+||-+
T Consensus       240 CHR~~~~-----------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  240 CHRSTNS-----------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             EeccCCC-----------CCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            3322110           01112347899999999999999999999999863

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=8.2e-27  Score=187.66  Aligned_cols=243  Identities=25%  Similarity=0.438  Sum_probs=193.3

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      .+++++|.|..+.|+.+.+.+++ ..++++++|+.+++|+......     +                  .++.||++.|
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~-----~------------------~TLsGHtdkV  264 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL-----R------------------HTLSGHTDKV  264 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh-----h------------------hhhcccccce
Confidence            45678899999999999999886 4788999999999999864211     0                  2466899999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      +++.|......+++|+.|.+|++||+.. .+...+...    .....+..++    ..+++|=.|+.|++||.+...+..
T Consensus       265 t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  265 TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             eeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEecc----eeeeecccccceEEEeccCCceee
Confidence            9999998887899999999999999853 232222211    1223333332    247788899999999999988888


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----CCeEEEEEEcCCCeEEE-EEcCCcEEEEe
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----GAVIHALCFSPNRYWLC-AATEQSIKIWD  237 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~-~~~~~~i~iwd  237 (303)
                      +...+. .|+++..++++..+++++.|.++++.|+++.+....+..     .+-++.+.|||++.+++ ++.||+|+||+
T Consensus       337 sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~  415 (459)
T KOG0288|consen  337 SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWS  415 (459)
T ss_pred             EeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEE
Confidence            887754 899999999999999999999999999999887766642     34577889999986664 56799999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      +.++++.+.+.....                  ...+++++|+|.|..|++++.++.+++|
T Consensus       416 v~tgKlE~~l~~s~s------------------~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  416 VFTGKLEKVLSLSTS------------------NAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccCceEEEEeccCCC------------------CcceEEEEEcCCCchhhcccCCcceEec
Confidence            999998877654211                  1256889999999999999999999999

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.4e-25  Score=171.91  Aligned_cols=260  Identities=21%  Similarity=0.337  Sum_probs=186.8

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC-------ccccceeeeeecCCCcce-----------EEEEeC
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-------EKTYGVARRRLTGHSHFV-----------QDVVLS   72 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~i-----------~~~~~~   72 (303)
                      ++.-...|+++.|++++ +.+++++.|.+|++||....       .+++++....+.+|+..+           +.+.+.
T Consensus        10 f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             cccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            44445679999999765 68899999999999998754       355677777777765533           222222


Q ss_pred             CCC---ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118           73 SDG---QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD  148 (303)
Q Consensus        73 ~~~---~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d  148 (303)
                      .+.   -|.||...|++++.+|-+..+++++.|++|++||++. .+...+     +...-..++|.|++  .+++.+...
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-----~~~~~pi~AfDp~G--LifA~~~~~  161 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-----NLSGRPIAAFDPEG--LIFALANGS  161 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-----ecCCCcceeECCCC--cEEEEecCC
Confidence            111   1469999999999999999999999999999999863 222212     12223467899987  366777666


Q ss_pred             CcEEEEECCCc--eeEEEEc---CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEc
Q 048118          149 RTVKVWNLSNC--KLRATLA---GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFS  219 (303)
Q Consensus       149 g~i~iwd~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s  219 (303)
                      +.|++||++..  .+-.++.   +-....+.+.|||+|++++.+...+.+.+.|.-+|..+.++..    ...--..+|+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            69999999763  2223332   2356789999999999999999999999999999998777642    1122467899


Q ss_pred             CCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          220 PNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       220 ~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      ||++++.++ .||+|.+|+++++..+..++..                   ....+..+.|+|...++++++.  .+.+|
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------------------~~~~~~~~~fnP~~~mf~sa~s--~l~fw  300 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------------------NGGPVSCVRFNPRYAMFVSASS--NLVFW  300 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------------------CCCCccccccCCceeeeeecCc--eEEEE
Confidence            999776555 5799999999999877654421                   1222345779998877777654  45566


Q ss_pred             e
Q 048118          299 G  299 (303)
Q Consensus       299 ~  299 (303)
                      =
T Consensus       301 ~  301 (311)
T KOG1446|consen  301 L  301 (311)
T ss_pred             e
Confidence            3

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=3.4e-26  Score=181.20  Aligned_cols=220  Identities=28%  Similarity=0.519  Sum_probs=179.3

Q ss_pred             eeeecCCCcceEEEEeCCCCc------------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 048118           56 RRRLTGHSHFVQDVVLSSDGQ------------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL  111 (303)
Q Consensus        56 ~~~~~~~~~~i~~~~~~~~~~------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~  111 (303)
                      .+.+.+|.++|.++.+.|..+                        +.||...|..+++++-..|+.+++.|+.|+-||+.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            344567788888887776543                        24677778888888888888888888888888875


Q ss_pred             CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC
Q 048118          112 GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG  191 (303)
Q Consensus       112 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  191 (303)
                      .+  ..+....+|-..|.|++.+|..  ..+++|+.|..+|+||+++...+..+.+|..+|..+.+.|....+++||.|+
T Consensus       224 ~n--kvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  224 YN--KVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             hh--hhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            43  2344445788889999999974  4799999999999999999999999999999999999999888999999999


Q ss_pred             eEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccc
Q 048118          192 VILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKK  270 (303)
Q Consensus       192 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (303)
                      +|++||++.++...++ .+...+++++.+|....+|+++...|+.|++-.++++.++                    .++
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl--------------------sgh  359 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL--------------------SGH  359 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc--------------------ccc
Confidence            9999999998877665 4567899999999999999999999999999888776543                    233


Q ss_pred             ceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          271 NIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       271 ~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +.-++.++-..| .++++|++.|.+..||.
T Consensus       360 ~~iintl~~nsD-~v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  360 NAIINTLSVNSD-GVLVSGGDNGSIMFWDW  388 (460)
T ss_pred             cceeeeeeeccC-ceEEEcCCceEEEEEec
Confidence            444566665544 58899999999999986

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.3e-25  Score=193.95  Aligned_cols=214  Identities=14%  Similarity=0.223  Sum_probs=156.5

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+++|.+.|.+++|+|..+++|+||+.|++|++|++........    ..   ..        +...+.+|...|.+++
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i---~~--------p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EI---KD--------PQCILKGHKKKISIID  132 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----cc---cc--------ceEEeecCCCcEEEEE
Confidence            468899999999999997678999999999999999864321000    00   00        1113567999999999


Q ss_pred             EeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           89 FSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        89 ~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      |+|++.. +++++.|+.|++||+.........   .+...|.+++|+|++  ..+++++.|+.|++||+++++...++.+
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---~~~~~V~SlswspdG--~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---NMPKKLSSLKWNIKG--NLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---ecCCcEEEEEECCCC--CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            9999875 578999999999998654322111   134569999999986  4788889999999999999998888999


Q ss_pred             CCCCeeE-----EEECCCCCEEEEEeCCC----eEEEEeCCC-CceEEEecCCC---eEEEEEEcCCCeEE-EEEcCCcE
Q 048118          168 HTGYVNT-----VAVSPDGSLCASGGKDG----VILLWDLAE-GKRLYSLDAGA---VIHALCFSPNRYWL-CAATEQSI  233 (303)
Q Consensus       168 ~~~~i~~-----~~~~~~~~~l~~~~~d~----~v~iwd~~~-~~~~~~~~~~~---~v~~~~~s~~~~~l-~~~~~~~i  233 (303)
                      |.+.+..     ..|++++.+|++++.|+    +|++||++. ++++..+....   .+......+++.++ ++..|+.|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            9876433     33568888998887664    799999985 55665543322   22222223446544 55689999


Q ss_pred             EEEeCCCCc
Q 048118          234 KIWDLESKS  242 (303)
Q Consensus       234 ~iwd~~~~~  242 (303)
                      ++|++..+.
T Consensus       288 r~~e~~~~~  296 (568)
T PTZ00420        288 RYYQHSLGS  296 (568)
T ss_pred             EEEEccCCc
Confidence            999997654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.1e-25  Score=200.43  Aligned_cols=277  Identities=22%  Similarity=0.319  Sum_probs=190.5

Q ss_pred             ccccc-cceeeeecCCCCCcEEEEec--CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           11 MRAHT-DMVTAIATPIDNSDMIVTAS--RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        11 ~~~h~-~~v~~v~~~~~~~~~~~t~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +-+|. ..|++|..+|++. .|+||+  .|+.++||+...--.......-.++.+           -.+...|.+.|+|+
T Consensus         8 wv~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~-----------l~~m~~h~~sv~CV   75 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH-----------LCTMDDHDGSVNCV   75 (942)
T ss_pred             ccccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchh-----------heeeccccCceeEE
Confidence            33444 5699999999874 799999  899999998754211100000001101           12345799999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCC-----c-----------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLG-----E-----------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~-----~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      .|+|+|++||+|+.|+.|.+|+...     .           ....+.....|...|..++|+|++  .++++++.|++|
T Consensus        76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsV  153 (942)
T KOG0973|consen   76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSV  153 (942)
T ss_pred             EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceE
Confidence            9999999999999999999998641     0           011223345688899999999976  589999999999


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-------CCCeEEEEEEcCCCeE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-------AGAVIHALCFSPNRYW  224 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~  224 (303)
                      .+|+..+.+....+.+|.+.|..+.|.|-|++||+-+.|++|+||+..+-...+.+.       .....+.+.|||||.+
T Consensus       154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             EEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence            999999999999999999999999999999999999999999999966544444432       2346778899999988


Q ss_pred             EEEEc-----CCcEEEEeCCCCceeee----------eeecc---ccccc---cccCc----c-----------------
Q 048118          225 LCAAT-----EQSIKIWDLESKSIVED----------LKVDL---KTEAE---KSEAT----T-----------------  262 (303)
Q Consensus       225 l~~~~-----~~~i~iwd~~~~~~~~~----------~~~~~---~~~~~---~~~~~----~-----------------  262 (303)
                      |++..     ...+.|.+-.+.+.-.+          .+...   .....   .....    .                 
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            87642     22466655443321111          11100   00000   00000    0                 


Q ss_pred             --ceeec-cccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          263 --ATTTI-KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       263 --~~~~~-~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                        +...+ .-....+.+++|+|||..|+++|.||+|.+....
T Consensus       314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence              00000 0012236899999999999999999999998653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.1e-25  Score=194.79  Aligned_cols=226  Identities=26%  Similarity=0.414  Sum_probs=189.1

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------   76 (303)
                      +++..+..|.++|-.|.|+|.. .+|++||.|-+|++|+...     ..++-.+.+|..+|+.+.+.++-.         
T Consensus        42 tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~-----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQ  115 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT-----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQ  115 (1202)
T ss_pred             hHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc-----ceehhhhccccceeEEeeccCCCceEEEccCCC
Confidence            3556788999999999999986 5999999999999999864     345667788888888887765321         


Q ss_pred             ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-------------------------
Q 048118           77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-------------------------  116 (303)
Q Consensus        77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-------------------------  116 (303)
                                     ++||..-|-|.+|+|...+++++|-|.+|||||+.+-.+.                         
T Consensus       116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence                           4699999999999999999999999999999997432111                         


Q ss_pred             --eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee--EEEEcCCCCCeeEEEECCCCCEEEEEeCCCe
Q 048118          117 --TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL--RATLAGHTGYVNTVAVSPDGSLCASGGKDGV  192 (303)
Q Consensus       117 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  192 (303)
                        .....++|...|+.++|+|.-  +.+++|+.|.-|++|.+...+.  +.+..+|.+.|+++-|+|...++++.|+|++
T Consensus       196 aVVK~VLEGHDRGVNwaAfhpTl--pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS  273 (1202)
T ss_pred             eeeeeeecccccccceEEecCCc--ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence              011235688889999999964  6899999999999999876553  3567899999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          193 ILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       193 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                      |+|||+...+.+.++.. ......++-+|..++++++.|+-+.+|-++
T Consensus       274 irVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  274 IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             EEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence            99999999999998854 568888999999999999999988888875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.6e-26  Score=186.89  Aligned_cols=213  Identities=26%  Similarity=0.453  Sum_probs=169.8

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      +|++|.+.=+.++|++.....+++++.|++|++||+.......                -...+...+.+|+..|..++|
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~----------------~~~~p~~~~~~h~~~VeDV~~  235 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED----------------KVVDPKTIFSGHEDVVEDVAW  235 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC----------------ccccceEEeecCCcceehhhc
Confidence            5788988889999999988999999999999999997433210                012233457899999999999


Q ss_pred             eeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcC
Q 048118           90 SIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAG  167 (303)
Q Consensus        90 ~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~  167 (303)
                      ++.. .+|++++.|+.+.|||++..........++|...+.|++|+|.. ...|++|+.|++|.+||+++. ++..++.+
T Consensus       236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccC
Confidence            9864 58999999999999998753333344556899999999999976 468999999999999999874 56788999


Q ss_pred             CCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce--------------EEEe-cCCCeEEEEEEcCCCeEEEE--Ec
Q 048118          168 HTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR--------------LYSL-DAGAVIHALCFSPNRYWLCA--AT  229 (303)
Q Consensus       168 ~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--------------~~~~-~~~~~v~~~~~s~~~~~l~~--~~  229 (303)
                      |...|..+.|+|.. ..||+++.|+++.|||+..-..              ++.. .+...|..+.|+|...++.+  +.
T Consensus       315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae  394 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE  394 (422)
T ss_pred             CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence            99999999999965 5789999999999999853111              1111 13467999999999876644  46


Q ss_pred             CCcEEEEeCC
Q 048118          230 EQSIKIWDLE  239 (303)
Q Consensus       230 ~~~i~iwd~~  239 (303)
                      |+.+.||...
T Consensus       395 DN~LqIW~~s  404 (422)
T KOG0264|consen  395 DNILQIWQMA  404 (422)
T ss_pred             CceEEEeecc
Confidence            8999999974

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.2e-26  Score=191.25  Aligned_cols=250  Identities=20%  Similarity=0.364  Sum_probs=192.6

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      .+++| .|.+.|.++.++... +.+.||+. |.|++||+...+.            ..+++.+....      ...-|.+
T Consensus       412 q~~tL-~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------------k~PvsqLdcl~------rdnyiRS  470 (705)
T KOG0639|consen  412 QINTL-AHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------------KSPVSQLDCLN------RDNYIRS  470 (705)
T ss_pred             hhhhh-ccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------------CCccccccccC------cccceee
Confidence            34444 488899999888654 57899887 6899999975422            12222222111      2234678


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      +...|+|+.|++|+.-.++.|||+...................+++.+|+.  ...++++.||.|.|||+.++..+..++
T Consensus       471 ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa--kvcFsccsdGnI~vwDLhnq~~Vrqfq  548 (705)
T KOG0639|consen  471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA--KVCFSCCSDGNIAVWDLHNQTLVRQFQ  548 (705)
T ss_pred             eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc--ceeeeeccCCcEEEEEcccceeeeccc
Confidence            999999999999999999999998654322111111111234568888875  467889999999999999999999999


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceee
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVE  245 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~  245 (303)
                      +|.+.+.++.++++|..|=+|+.|.+||.||++++..+...+-.+.|.++.++|.+.|++++. ++.+.+-.....+.  
T Consensus       549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--  626 (705)
T KOG0639|consen  549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--  626 (705)
T ss_pred             CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--
Confidence            999999999999999999999999999999999999888777778999999999999999886 56677766543322  


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                         +-+..|...+.++.|++.|+++++.+.|+.+..|..
T Consensus       627 -------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  627 -------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             -------------------eeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence                               223446677889999999999999999999999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2.1e-25  Score=190.06  Aligned_cols=260  Identities=26%  Similarity=0.420  Sum_probs=192.8

Q ss_pred             ccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEE-EEeCC-------
Q 048118            2 AEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD-VVLSS-------   73 (303)
Q Consensus         2 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-------   73 (303)
                      |.+..+...+++|...|..+++.+  +..++++|.|+++++|+-...+-   .....+.++.++|.. +++.+       
T Consensus         1 ~~~Y~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~---l~~~~~~~~~g~i~~~i~y~e~~~~~l~   75 (745)
T KOG0301|consen    1 MPQYKLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQY---LETHAFEGPKGFIANSICYAESDKGRLV   75 (745)
T ss_pred             CCcceeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCccc---ccceecccCcceeeccceeccccCcceE
Confidence            356688899999999999888764  34799999999999997633211   111223344455544 33332       


Q ss_pred             ------------------CCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcC
Q 048118           74 ------------------DGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP  135 (303)
Q Consensus        74 ------------------~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~  135 (303)
                                        -..+.+|+..|.+++...++. +++|+.|.++++|... +....   ..+|+..|.+++.-|
T Consensus        76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-~l~~~---l~gH~asVWAv~~l~  150 (745)
T KOG0301|consen   76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-ELVYS---LQGHTASVWAVASLP  150 (745)
T ss_pred             eecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch-hhhcc---cCCcchheeeeeecC
Confidence                              123579999999999888877 9999999999999763 22222   358999999999988


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEE
Q 048118          136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIH  214 (303)
Q Consensus       136 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~  214 (303)
                      +.   .+++|+.|..|++|.-  +++.+++.+|++.|..+++-+++ .|++++.||.|+.|++ +++.+... .+.+.++
T Consensus       151 e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY  223 (745)
T KOG0301|consen  151 EN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY  223 (745)
T ss_pred             CC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEE
Confidence            74   6999999999999964  77889999999999999998764 6789999999999999 56666554 5577899


Q ss_pred             EEE-EcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          215 ALC-FSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       215 ~~~-~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      +++ ..+++.+++++.|+++++|+..  +....+..+                  .  .-++++.+-+.| -+++|++||
T Consensus       224 sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP------------------t--tsiWsa~~L~Ng-DIvvg~SDG  280 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP------------------T--TSIWSAKVLLNG-DIVVGGSDG  280 (745)
T ss_pred             EEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC------------------c--cceEEEEEeeCC-CEEEeccCc
Confidence            998 5556777888899999999976  333333221                  1  123445544443 478899999


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      .||+|-..
T Consensus       281 ~VrVfT~~  288 (745)
T KOG0301|consen  281 RVRVFTVD  288 (745)
T ss_pred             eEEEEEec
Confidence            99999654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-25  Score=182.41  Aligned_cols=237  Identities=24%  Similarity=0.416  Sum_probs=186.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +.--++.|+++.|..+ +++++.|...|.|++||+.+..     .++                  .+.+|+.+|..+.|+
T Consensus        64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~-----iLR------------------~~~ah~apv~~~~f~  119 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRV-----ILR------------------QLYAHQAPVHVTKFS  119 (487)
T ss_pred             HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHH-----HHH------------------HHhhccCceeEEEec
Confidence            4445678999999866 4789999999999999954311     111                  356799999999999


Q ss_pred             eCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCC
Q 048118           91 IDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGH  168 (303)
Q Consensus        91 ~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~  168 (303)
                      |.+ ..+++|+.|+.+++||+.+...  ......|++.|.|.+|+|... ..+++|+.||.|++||.+.. ....++ .|
T Consensus       120 ~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~el-nh  195 (487)
T KOG0310|consen  120 PQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVEL-NH  195 (487)
T ss_pred             ccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCC-eEEEecCCCceEEEEEeccCCceeEEe-cC
Confidence            865 5788889999999999866442  334568999999999999653 37899999999999999876 444444 47


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEe-cCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceee
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSL-DAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      ..+|..+.+-|.|..+++++. ..|++||+.+| +.+... ++...|+|+++..++. +++++-|+.+++||+.+.+++.
T Consensus       196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence            889999999999999988864 58999999854 444444 3678999999998875 5566679999999988888776


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      .++..                     ..+.+++.+|++..++.|-.||.+-+
T Consensus       275 s~~~~---------------------~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  275 SWKYP---------------------GPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             eeecc---------------------cceeeEEecCCCceEEEecccceeee
Confidence            65532                     24578999999999999999998854

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-26  Score=200.14  Aligned_cols=233  Identities=24%  Similarity=0.422  Sum_probs=179.3

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccC--ccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-CCEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKE--EKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-NRQI   96 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~l   96 (303)
                      .|.|..-..++|||++..|.|.+||+...  ++..                      --|..|+-.+++++|++. ..+|
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l----------------------~~f~EH~Rs~~~ldfh~tep~il  149 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL----------------------TVFNEHERSANKLDFHSTEPNIL  149 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhh----------------------hHhhhhccceeeeeeccCCccEE
Confidence            45566555689999999999999999752  1110                      025678999999999985 5689


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEE
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTV  175 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~  175 (303)
                      ++|++||.|++||++...  .........+.|+.++|+|.. ...|+++...|.+++||++.. ++...+..|.++|.++
T Consensus       150 iSGSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             EecCCCceEEEEeeeccc--ccccccccchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence            999999999999985432  222233456779999999975 578999999999999999764 4667788999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEecCCCeEEEEEEcCCC-eEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118          176 AVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNR-YWLCAAT---EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~-~~l~~~~---~~~i~iwd~~~~~~~~~~~~  249 (303)
                      .|+|++.+||+|++|++|+|||..+++  .+.++....++..+.|.|.. ..|+.++   |-.|++||++..-+.     
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP-----  301 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP-----  301 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc-----
Confidence            999999999999999999999997543  46677778899999999986 4555543   778999999764321     


Q ss_pred             ccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEE
Q 048118          250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIR  296 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~  296 (303)
                                    ..++..|...++.++|-. |...|.+++.||+|.
T Consensus       302 --------------~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  302 --------------YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             --------------ceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence                          122333444456677854 456788999999873

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=4.9e-27  Score=177.74  Aligned_cols=242  Identities=23%  Similarity=0.355  Sum_probs=199.1

Q ss_pred             cccccccceeeeecCC--CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           10 TMRAHTDMVTAIATPI--DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~--~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +-++|..+|-.++|+|  +.+=+|++++.|+.-.+=+-..               ..+|        |.|.+|++.|++.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t---------------gdwi--------gtfeghkgavw~~   65 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT---------------GDWI--------GTFEGHKGAVWSA   65 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC---------------CCcE--------EeeeccCcceeee
Confidence            3678999999999988  3445778888887544322111               1222        4678999999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEE
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATL  165 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~  165 (303)
                      +.+.+..+.+++++|-+.++||... .+...+    .|...|.+++|+.+.  .++++|+.+..+|+||++..+ +..++
T Consensus        66 ~l~~na~~aasaaadftakvw~a~tgdelhsf----~hkhivk~~af~~ds--~~lltgg~ekllrvfdln~p~App~E~  139 (334)
T KOG0278|consen   66 TLNKNATRAASAAADFTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDS--NYLLTGGQEKLLRVFDLNRPKAPPKEI  139 (334)
T ss_pred             ecCchhhhhhhhcccchhhhhhhhhhhhhhhh----hhhheeeeEEecccc--hhhhccchHHHhhhhhccCCCCCchhh
Confidence            9999999999999999999999643 222222    366678999999886  579999999999999997643 56788


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      .+|.+.|..+-|-...+.+++++.|++||+||.+++..++++...++|.++.++++|.+++.+..+.|.+||.++-.+++
T Consensus       140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK  219 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK  219 (334)
T ss_pred             cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee
Confidence            99999999999887778888889999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .++++..                     +.+.+.+|+...+++|+.|+.++.||..
T Consensus       220 s~k~P~n---------------------V~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  220 SYKMPCN---------------------VESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             eccCccc---------------------cccccccCCCceEEecCcceEEEEEecc
Confidence            7776422                     3456778999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=8.5e-25  Score=204.37  Aligned_cols=205  Identities=22%  Similarity=0.411  Sum_probs=162.5

Q ss_pred             CceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118           75 GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD  148 (303)
Q Consensus        75 ~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d  148 (303)
                      +.+..|.+.|.+++|+|++.++++|+.|+.|+||+......      ...... .+...+.+++|+|.. ...+++++.|
T Consensus       477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~-~~~las~~~D  554 (793)
T PLN00181        477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYI-KSQVASSNFE  554 (793)
T ss_pred             ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCC-CCEEEEEeCC
Confidence            44567999999999999999999999999999999642110      001111 123468899998854 3579999999


Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC-CCeEE-
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP-NRYWL-  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l-  225 (303)
                      |.|++||+.+++....+.+|.+.|++++|+| ++.+|++|+.|++|++||+++++.+..+.....+.++.|++ ++.++ 
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA  634 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence            9999999999988889999999999999997 78899999999999999999998888877667888999954 56555 


Q ss_pred             EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          226 CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       226 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++.|+.|++||+++.+...                   ..+.+|...+..+.|. ++.+|++|+.|++|++||+.
T Consensus       635 tgs~dg~I~iwD~~~~~~~~-------------------~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLPL-------------------CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEeCCCeEEEEECCCCCccc-------------------eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            45579999999997653210                   1123344556788886 67899999999999999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=1.5e-26  Score=189.60  Aligned_cols=221  Identities=23%  Similarity=0.415  Sum_probs=170.4

Q ss_pred             ceecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           76 QFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      .+.+|+..|.++.|.| .+.+|++++.|+.|+||++-.. ...+....+|+.+|..++|++++  ..+++++.|+.+++|
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRFLKLW  285 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccC--Ceeeeeecceeeeee
Confidence            4679999999999999 8899999999999999998552 23344456899999999999987  469999999999999


Q ss_pred             ECCCceeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCC-eEEEEEcCC
Q 048118          155 NLSNCKLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR-YWLCAATEQ  231 (303)
Q Consensus       155 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~~  231 (303)
                      |.+++++...+.. ...++++.|+|++ +.|++|+.|+.|+-||+++++.++.+.. -..|..+.|-+++ .++.++.|+
T Consensus       286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence            9999999888864 3467999999988 7889999999999999999998777654 3678899999987 456667789


Q ss_pred             cEEEEeCCCCceeeeeee---ccccc-----------cccccCcccee------------ecccc--ceeEEEEEEcCCC
Q 048118          232 SIKIWDLESKSIVEDLKV---DLKTE-----------AEKSEATTATT------------TIKKK--NIYCTSLNWSVDG  283 (303)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~~------------~~~~~--~~~~~~~~~sp~~  283 (303)
                      ++++|+.+....++...-   ...+.           ++.....+..+            .+.+|  ..+...+.|||||
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence            999999987755543211   00000           01111111111            11122  2345678999999


Q ss_pred             CEEEEeecCCeEEEEec
Q 048118          284 STLFSGYTDGVIRVWGI  300 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~~  300 (303)
                      .+|++|+.||.+.+||.
T Consensus       445 ~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             CeEEeecCCccEEEeec
Confidence            99999999999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.4e-26  Score=191.24  Aligned_cols=244  Identities=22%  Similarity=0.399  Sum_probs=188.5

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccc-eeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS   98 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t   98 (303)
                      .+..+++++++|.|||.||.|++|+......... .....+.+                  |.+=|+.+....+++.|++
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~------------------HsDWVNDiiL~~~~~tlIS   90 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH------------------HSDWVNDIILCGNGKTLIS   90 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh------------------hHhHHhhHHhhcCCCceEE
Confidence            4556677788999999999999999865432111 12333444                  4445556666677889999


Q ss_pred             EeCCCcEEEEecCCceeeeeecCCCCccceEEEEE-cCCCCCCEEEEEeCCCcEEEEECCCcee--E--------EEEc-
Q 048118           99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRF-SPNTLQPTIVSASWDRTVKVWNLSNCKL--R--------ATLA-  166 (303)
Q Consensus        99 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~dg~i~iwd~~~~~~--~--------~~~~-  166 (303)
                      ++.|-+|++|+........+.....|.++|.|++. -++  ...+++||-|+.|.+||++.+..  .        ..+. 
T Consensus        91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen   91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             ecCCceEEEeecccCcchhHhhhhcccchheeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            99999999999765433334444568999999998 444  35799999999999999986521  1        2233 


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCcee
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIV  244 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~  244 (303)
                      ++..+|.+++.++.|..+++|+..+.+++||.++++.+-.+. +..-|+.+..++|| .++.+++||.|++||+..++.+
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            778899999999999999999999999999999988776664 45789999999998 5777889999999999988776


Q ss_pred             eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                      ..+.+                    |...++++.-+|+-.++.+|+.||.|..=|+.+|
T Consensus       249 ~T~~v--------------------H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  249 ATYIV--------------------HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeEEe--------------------ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            65443                    2233677888899999999999999988887654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=2e-24  Score=177.58  Aligned_cols=202  Identities=34%  Similarity=0.578  Sum_probs=167.7

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.+|.++|.+++|+|+++++++++.|+.+++|+......  ......|...+..+.|.|++  ..+++++.++.|++|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTGPVRDVAASADG--TYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EEEEecCCcceeEEEECCCC--CEEEEEcCCCeEEEEE
Confidence            4568999999999999999999999999999999864322  12223466678899999975  4789999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-CCcE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-EQSI  233 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i  233 (303)
                      +.+++....+..|...+.++.|+|+++++++++.|+.+++||+++++.+..+. ....+.+++|+|++.+++++. ++.|
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence            99877778888888899999999998888888889999999999888777765 456799999999988887777 9999


Q ss_pred             EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++||+++++.+..+.                    .+...+.++.|+|++..+++++.||.+++||+.
T Consensus       160 ~i~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         160 KLWDLRTGKCVATLT--------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             EEEEccccccceeEe--------------------cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence            999998766544332                    122345779999999999999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=9.8e-25  Score=176.85  Aligned_cols=237  Identities=26%  Similarity=0.401  Sum_probs=190.6

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..++++...|. ...++||+.|.++.++|.......                       ..|.||+..|+.+.++++...
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l-----------------------~~~~Gh~kki~~v~~~~~~~~  275 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQIL-----------------------ATLKGHTKKITSVKFHKDLDT  275 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecchhhhh-----------------------hhccCcceEEEEEEeccchhh
Confidence            45777777776 568999999999999997643211                       146789999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC--CCCee
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH--TGYVN  173 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~  173 (303)
                      +++++.|..|++|......  .......|..+|+.+..+|.+  .++++++.|+..-+.|++++.........  .-.++
T Consensus       276 v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  276 VITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             eeecCCcceEEeecccccc--CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            9999999999999864322  223345789999999999987  58999999999999999998876555432  23589


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecc
Q 048118          174 TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       174 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      +.+|+|||..|.+|..|+.|+|||+.++..+..|+ +..+|..++|+.+|+||+++. |+.|++||+|.-+..+.+..+-
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence            99999999999999999999999999988777775 467999999999999998765 5669999998766555443221


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                                        . ..+.++.|.+.|.+|+.+++|=.|++++
T Consensus       432 ------------------~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  432 ------------------K-KEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ------------------c-ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                              1 1356789999999999999888887775

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=3.2e-26  Score=184.25  Aligned_cols=248  Identities=25%  Similarity=0.407  Sum_probs=193.8

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+..|...|..+-|-++ .+.|+||+.|..|++|+.......             .        .+.+.|-.++|+++.
T Consensus       169 ~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~-------------~--------~~tLaGs~g~it~~d  226 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSE-------------L--------ISTLAGSLGNITSID  226 (459)
T ss_pred             hhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhh-------------h--------hhhhhccCCCcceee
Confidence            357889999999999875 468999999999999987432100             0        012345567899999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118           89 FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~  168 (303)
                      |.+++.++++.+.|+.+++|+......  .....+|++.|.++.|....  ..+++|+.|.+|+.||+....+..++-. 
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~--~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-  301 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRL--RHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-  301 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhh--hhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-
Confidence            999999999999999999999854322  22234699999999998764  3489999999999999988777665442 


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeee
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      ...+..+..+  ...+++|-.|++|+.||.++..+....+.+..|.++..++++. +++++-|..+.+.|+++.++...+
T Consensus       302 ~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  302 GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence            3456677766  4567888899999999999999999999999999999999985 556666999999999988776554


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .-.-.                ....-++.+.|||++.|+++||.||.|++|++.
T Consensus       380 sA~g~----------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  380 SAEGF----------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             ecccc----------------ccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            32110                011225678899999999999999999999874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.5e-24  Score=166.73  Aligned_cols=242  Identities=18%  Similarity=0.314  Sum_probs=175.2

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      .+.|..+.|+|.+ +.|+.++-||++++|+....+...                        ...|..++.+++|.++ .
T Consensus        13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~------------------------~~~~~~plL~c~F~d~-~   66 (323)
T KOG1036|consen   13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKL------------------------KFKHGAPLLDCAFADE-S   66 (323)
T ss_pred             hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhh------------------------heecCCceeeeeccCC-c
Confidence            4679999999765 456667799999999987543211                        1237889999999874 4


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118           95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT  174 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  174 (303)
                      .+++|+.||.|+++|+.......+   ..|..+|.|+...+..  ..+++|++|+.|++||.+.......+.. ...|.+
T Consensus        67 ~~~~G~~dg~vr~~Dln~~~~~~i---gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~  140 (323)
T KOG1036|consen   67 TIVTGGLDGQVRRYDLNTGNEDQI---GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC  140 (323)
T ss_pred             eEEEeccCceEEEEEecCCcceee---ccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence            688999999999999976554433   3578889999999753  5799999999999999986444444432 347777


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCce----eee
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSI----VED  246 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~----~~~  246 (303)
                      +..+  +..|++|+.|..+.+||++......+.   .....++++++-|++ -+++++-+|+|.+=.++..+.    .-.
T Consensus       141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence            7664  678999999999999999876543322   234679999999965 466777799887755444311    111


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+.+....    ..       ..-...+++++|+|-..+|+||+.||.|.+||+.
T Consensus       219 FkCHr~~~----~~-------~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  219 FKCHRLSE----KD-------TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             EEeeeccc----CC-------ceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence            22221111    00       0012346899999999999999999999999985

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-23  Score=155.42  Aligned_cols=263  Identities=18%  Similarity=0.225  Sum_probs=190.0

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEE--EEeCCCCceecccCC
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD--VVLSSDGQFVGHTKD   83 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~h~~~   83 (303)
                      +-+.+|+. ..+|-+++|+|.+ .+.+.||+..++++-.........       .+|..+.+.  +.+   .+-+-|.+.
T Consensus        24 ~~i~~l~d-sqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r-------~~hea~~~pp~v~~---kr~khhkgs   91 (350)
T KOG0641|consen   24 EAINILED-SQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLR-------HAHEAAKQPPSVLC---KRNKHHKGS   91 (350)
T ss_pred             EEEEEecc-hhheeeEEecCCC-ceEEeccCCceEEEEccccccCcc-------cccccccCCCeEEe---eeccccCcc
Confidence            33444443 3578899999986 578999999999987654221110       112221110  111   123458999


Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeee---eecCCCCccceEEEEEcCCC--CCCEEEEE-eCCCcEEEEECC
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYT---IQEGDAHTEWVSCVRFSPNT--LQPTIVSA-SWDRTVKVWNLS  157 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~~~~~~~-~~dg~i~iwd~~  157 (303)
                      |+|.+|+|+|++++||++|+.|++..+..+.-..   -....-|...|..++|-.++  ....++++ ..|-.|++-|..
T Consensus        92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~  171 (350)
T KOG0641|consen   92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG  171 (350)
T ss_pred             EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence            9999999999999999999999997654332110   11223467789999986443  23344543 345567777888


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeEEEEEc
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~  229 (303)
                      .++..+.+.+|.+-|.++ ++-++-.+++|+.|.+|++||++-...+.++..        .+.|.+++..|.|.+|+.+.
T Consensus       172 ~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~  250 (350)
T KOG0641|consen  172 RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH  250 (350)
T ss_pred             CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence            888888999999999876 344678999999999999999998877776532        25789999999999888774


Q ss_pred             -CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          230 -EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       230 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                       |.+..+||++.++.+..+.                    .|...+.++.|||...||++||.|..|++-|++
T Consensus       251 ~dssc~lydirg~r~iq~f~--------------------phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  251 ADSSCMLYDIRGGRMIQRFH--------------------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CCCceEEEEeeCCceeeeeC--------------------CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence             7899999999988776442                    233456789999999999999999999998874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.2e-23  Score=154.05  Aligned_cols=255  Identities=25%  Similarity=0.368  Sum_probs=184.1

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .+..+.+.|+++|+|.+|+|.+ ++++|||+|.+|++..++.....       ..+           ++-++.-|.+.|.
T Consensus        80 v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~-------~~g-----------~dle~nmhdgtir  140 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCN-------ATG-----------HDLEFNMHDGTIR  140 (350)
T ss_pred             EEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccc-------ccC-----------cceeeeecCCcee
Confidence            3445577899999999999875 79999999999999877543211       111           2235667999999


Q ss_pred             EEEEeeC----CCEEEEEeCCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           86 SVAFSID----NRQIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        86 ~i~~~~~----~~~l~t~~~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      .++|-.+    +..|+++++ |-.++|  |....  ..++...+|+.-|.++ ++.++  ..+++|+.|.+|++||++-.
T Consensus       141 dl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~  214 (350)
T KOG0641|consen  141 DLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHALSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVN  214 (350)
T ss_pred             eeEEecCCCcCceEEEecCC-CcceEEEeecCCC--CcceeecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeecc
Confidence            9999754    346666654 445555  43222  1233445677777776 22332  47899999999999999887


Q ss_pred             eeEEEEcC--C-----CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCe-EEEEEcC
Q 048118          160 KLRATLAG--H-----TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRY-WLCAATE  230 (303)
Q Consensus       160 ~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~  230 (303)
                      .++.++..  |     ...|.+++..|.|++|++|-.|..+.+||++.+++++.+ ++...|+++.|+|... +|.++.|
T Consensus       215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd  294 (350)
T KOG0641|consen  215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD  294 (350)
T ss_pred             ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc
Confidence            77766532  1     256899999999999999999999999999999999887 4567899999999975 4566679


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+|++-|+.. .+.+++.+-               ....|.--+..+.|+|+.--+++.|.|.++.+|-+.
T Consensus       295 ~~ikltdlqg-dla~el~~~---------------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  295 MKIKLTDLQG-DLAHELPIM---------------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEeeccc-chhhcCceE---------------EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            9999999853 333333211               011111223457899998889999999999999763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=5.9e-24  Score=186.17  Aligned_cols=233  Identities=30%  Similarity=0.523  Sum_probs=186.8

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      |...+.+..+.   ++++++++.|++|++|+......    ..                  .++.||.+.|.++++..-+
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~----i~------------------~~l~GH~g~V~~l~~~~~~  261 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYL----IL------------------TRLVGHFGGVWGLAFPSGG  261 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccceE----EE------------------eeccCCCCCceeEEEecCC
Confidence            44557777776   46899999999999999864321    00                  1356899999999999878


Q ss_pred             CEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe
Q 048118           94 RQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV  172 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  172 (303)
                      ..+++|+.|.++++||... .+...   ...|...+.++...+    ..+++|+.|.+|++|++.+++++..+.+|.++|
T Consensus       262 ~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V  334 (537)
T KOG0274|consen  262 DKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV  334 (537)
T ss_pred             CEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccE
Confidence            8999999999999999754 33333   347888899988765    368889999999999999999999999999999


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC-ceeeeeeec
Q 048118          173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESK-SIVEDLKVD  250 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~  250 (303)
                      .++.++  +.++++|+.|++|++||..+++++.++.. ...|+++.+.+...++.++.|+.|++||+++. +.+..+   
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl---  409 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTL---  409 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhh---
Confidence            999997  78999999999999999999999998864 57899998876556677788999999999987 444333   


Q ss_pred             cccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                                       +.+...+..+  ...+.+|++++.||+|++||...
T Consensus       410 -----------------~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  410 -----------------QGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             -----------------cCCccccccc--ccccceeEeccccccEEEeeccc
Confidence                             3333344333  34678999999999999999754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.8e-23  Score=162.33  Aligned_cols=217  Identities=24%  Similarity=0.345  Sum_probs=153.4

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC--CCcEEEEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--DRTVKVWN  155 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--dg~i~iwd  155 (303)
                      ...+.|+++.|+++|.++++++.|..++|||.... ....+.   .+...+..++|-...  ..++.++.  |.+||.-+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~--~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHS--NTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCC--ceEEEccCCCCCceEEEE
Confidence            34678999999999999999999999999997543 222222   233346667776543  34555555  88999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCC-cEE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIK  234 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~  234 (303)
                      +.+++.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|.|+|.++|++.++ .|+
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEE
Confidence            99999999999999999999999999999999999999999999777655444322 2346899999999888765 899


Q ss_pred             EEeCCCCceeee--eeec-----------ccccccccc------------Cc--cceeecc---ccceeEEEEEEcCCCC
Q 048118          235 IWDLESKSIVED--LKVD-----------LKTEAEKSE------------AT--TATTTIK---KKNIYCTSLNWSVDGS  284 (303)
Q Consensus       235 iwd~~~~~~~~~--~~~~-----------~~~~~~~~~------------~~--~~~~~~~---~~~~~~~~~~~sp~~~  284 (303)
                      +||+|.-..-..  ..+.           ..+.++...            +.  ....++.   .......+..|+||++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            999986422111  1111           000000000            00  0000110   1111124678999999


Q ss_pred             EEEEeecCCeEEEEecc
Q 048118          285 TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       285 ~l~~gs~Dg~v~~w~~~  301 (303)
                      ++++|+.||+|++|++.
T Consensus       246 Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             EEEEecCCCcEEEEEcC
Confidence            99999999999999974

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=5e-24  Score=162.34  Aligned_cols=205  Identities=22%  Similarity=0.363  Sum_probs=164.9

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.+|.+.+.+++|+.+|..+++|+.|+++++|++.......-.....|...|-.++|+|.. ...+++++.|.+|++||
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIWD   93 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEEE
Confidence            45688999999999999999999999999999998654322223345677778889999865 45799999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcCCcEE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATEQSIK  234 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~  234 (303)
                      .+.+++...+....+. ..+.|+|+|++++++..|..|...|.++.+.....+....++-++|+.++.++ .....|.|.
T Consensus        94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            9999988777654333 45789999999999999999999999998888777777788888998666544 444558888


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      |...-.-+                    +..+++.|...|.++.|+|+|+++|+|+.|-.+-+||++.
T Consensus       173 ILsypsLk--------------------pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  173 ILSYPSLK--------------------PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEeccccc--------------------cccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            86653222                    1234567778889999999999999999999999999863

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=7.3e-24  Score=169.05  Aligned_cols=280  Identities=19%  Similarity=0.300  Sum_probs=191.0

Q ss_pred             ccccccccceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            9 GTMRAHTDMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ...-+|.+-++.+...+- +.-+.++.+..|.+++|++.+.-+..       ......+......|-..+.+|.+.-+.+
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l-------~~~~~~~~~s~~~Pl~t~~ghk~EGy~L  217 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNAL-------SEPGLEVKDSEFRPLFTFNGHKGEGYGL  217 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhh-------cCccccccccccCceEEecccCccceee
Confidence            345678888888776663 56788888999999999997532111       0011111112223334677899999999


Q ss_pred             EEeeC-CCEEEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEE
Q 048118           88 AFSID-NRQIVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRA  163 (303)
Q Consensus        88 ~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~  163 (303)
                      +|+|- ...++||.--+.|++|......... ....-.|+..|..++|+|.- ...|++|+.||+|+|||++.++  ...
T Consensus       218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             ecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc-CceEEeeecCceEEEEEecCCCcccee
Confidence            99993 3468888878889999875432211 12234588889999999975 4689999999999999998863  223


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC---CceEEEec-CCCeEEEEEEcCC--CeEEEEEcCCcEEEEe
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE---GKRLYSLD-AGAVIHALCFSPN--RYWLCAATEQSIKIWD  237 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd  237 (303)
                      ..+.|.+.|+.+.|+-.-.+||+|+.||+++|||++.   ++++.++. +..+|+++.|+|.  ..+++++.|++|.+||
T Consensus       297 ~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD  376 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD  376 (440)
T ss_pred             EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence            3478999999999998777999999999999999975   45666664 4689999999996  4566778899999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEE
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVW  298 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w  298 (303)
                      +.--.-..+....  ......+.+.+........-.+..+.|+++-+ +|++.+.||.-.+.
T Consensus       377 lsvE~D~ee~~~~--a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  377 LSVEADEEEIDQE--AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             eeccCChhhhccc--cccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            8422111000000  00000112222222333333456789999854 88899999976443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=5.3e-23  Score=159.46  Aligned_cols=220  Identities=23%  Similarity=0.360  Sum_probs=163.4

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcce-EEEEeCCCCceecccCCEEEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV-QDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.|.+.|+++.+.+..++++++|+.||.|.+||++......         .+..| ..+.+.....-.+|+-.|..+.|
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e---------~s~li~k~~c~v~~~h~~~Hky~iss~~W  109 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE---------ASGLIAKHKCIVAKQHENGHKYAISSAIW  109 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh---------hccceeheeeeccccCCccceeeeeeeEE
Confidence            467889999999999888999999999999999997532110         00000 00111111233578889999999


Q ss_pred             ee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC-CCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           90 SI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL-QPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        90 ~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      -| |...|.+++.|+.++|||......-..   ...++.|.+-+++|-.. +-.+++|..+-.|++.|+..+.+...+.+
T Consensus       110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~---F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVD---FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             eeecCceeecccccceEEEeecccceeeEE---eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence            98 567899999999999999864322111   12345577777777432 34677888889999999999999999999


Q ss_pred             CCCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCC-ceEEEe---------------cCCCeEEEEEEcCCCeEE-EEEc
Q 048118          168 HTGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEG-KRLYSL---------------DAGAVIHALCFSPNRYWL-CAAT  229 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~-~~~~~~---------------~~~~~v~~~~~s~~~~~l-~~~~  229 (303)
                      |.+.|.++.|+|..++ |++|+.||.|++||++.- -+...+               .....++.++|+.++..+ ..+.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            9999999999998775 689999999999999753 222221               123578999999998655 5678


Q ss_pred             CCcEEEEeCCCCc
Q 048118          230 EQSIKIWDLESKS  242 (303)
Q Consensus       230 ~~~i~iwd~~~~~  242 (303)
                      |.++++|+..+|+
T Consensus       267 d~r~r~wn~~~G~  279 (397)
T KOG4283|consen  267 DDRIRVWNMESGR  279 (397)
T ss_pred             ccceEEeecccCc
Confidence            9999999987653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.9e-23  Score=181.33  Aligned_cols=242  Identities=23%  Similarity=0.340  Sum_probs=188.8

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceec-ccCCEEEEEEe
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVG-HTKDVLSVAFS   90 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-h~~~i~~i~~~   90 (303)
                      .+|+.--+.|++.|++ +++.||+.||.|++|+....+...                       .... +...|.+++. 
T Consensus        10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P-----------------------~ti~~~g~~v~~ia~-   64 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEP-----------------------ETIDISGELVSSIAC-   64 (933)
T ss_pred             hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCC-----------------------chhhccCceeEEEee-
Confidence            4677778999999886 599999999999999876442100                       0111 3445555553 


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                       ...+|++|+.++.|.+|.+.......+.  ..-+.++.+++++-++  ..++.|+.|-.|++-++.+......+++|.+
T Consensus        65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL--~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a  139 (933)
T KOG1274|consen   65 -YSNHFLTGSEQNTVLRYKFPSGEEDTIL--ARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA  139 (933)
T ss_pred             -cccceEEeeccceEEEeeCCCCCcccee--eeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCC
Confidence             4458999999999999987543221111  1234568899998876  4789999999999999988888888999999


Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---------CCCeEEEEEEcCC-CeEEEEEcCCcEEEEeCCC
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---------AGAVIHALCFSPN-RYWLCAATEQSIKIWDLES  240 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~  240 (303)
                      +|.++.|+|.+++||+.+-||+|++||+.++....++.         ....+..++|+|+ |.+++.+.++.|.+|+..+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            99999999999999999999999999999887665542         1345778999999 6888999999999999998


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+....+..+..                  ...+..+.|+|.|+|||+++.||.|.|||+.
T Consensus       220 we~~f~Lr~~~~------------------ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  220 WELQFKLRDKLS------------------SSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ceeheeeccccc------------------ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            877665543211                  1114679999999999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=3e-24  Score=177.57  Aligned_cols=209  Identities=21%  Similarity=0.347  Sum_probs=161.0

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .-+||...+++.+|+|.+.+.|+|+|.||++|+|+.....+...+...+..                 .+-.-+++.++|
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-----------------~g~Rv~~tsC~~  325 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-----------------GGKRVPVTSCAW  325 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC-----------------CCcccCceeeec
Confidence            357999999999999999999999999999999998754332222111110                 123346889999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCcc--ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEE
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTE--WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATL  165 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~  165 (303)
                      +++|.++|+|+.||+|.+|+..+.... .....++|..  .|.|+.|++++  ++|++-+.|+++++||++..+ ++.+.
T Consensus       326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccccchhhh
Confidence            999999999999999999997433221 1223356665  79999999987  579999999999999998743 44433


Q ss_pred             cCC--CCCeeEEEECCCCCEEEEEeC------CCeEEEEeCCCCceEEEecC-CCeEEEEEEcCC-CeEEEEEcCCcEEE
Q 048118          166 AGH--TGYVNTVAVSPDGSLCASGGK------DGVILLWDLAEGKRLYSLDA-GAVIHALCFSPN-RYWLCAATEQSIKI  235 (303)
Q Consensus       166 ~~~--~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~-~~~l~~~~~~~i~i  235 (303)
                      .+-  .-+-+.++|||+.+++++|+.      .|++.++|..+-+.++.+.. ...|..+.|+|. .++++++.||.+++
T Consensus       404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence            332  124577899999999999853      46899999999888888754 567888999997 67888899999998


Q ss_pred             Ee
Q 048118          236 WD  237 (303)
Q Consensus       236 wd  237 (303)
                      |=
T Consensus       484 yY  485 (641)
T KOG0772|consen  484 YY  485 (641)
T ss_pred             EE
Confidence            74

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.7e-23  Score=159.76  Aligned_cols=205  Identities=22%  Similarity=0.383  Sum_probs=167.4

Q ss_pred             eCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           71 LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        71 ~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      +.|...+.+|.++|++++.+  +.++++|+.|.+|+|||......  ....-.|.+.|+++.|.+......+++|+.||.
T Consensus        33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q--lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ--LGILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh--hcceeccccceEEEEecCCcchhheeeecCCCc
Confidence            44556778999999999875  78999999999999999854322  222234788899999998765457999999999


Q ss_pred             EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC
Q 048118          151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE  230 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  230 (303)
                      |.+|+.....+...+++|.+.|+.++++|.+++-++.+.|+.+++||+-+|+.-+..........+.|+|.|..++.+..
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec
Confidence            99999999999999999999999999999999999999999999999998887666666666666999999988888888


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.|-+|.+++.++...+..+.                     .+.++.| -++.+|++|.+|+.+++||-+
T Consensus       189 ~~i~i~q~d~A~v~~~i~~~~---------------------r~l~~~~-l~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIENPK---------------------RILCATF-LDGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             cEEEEEecccHhHhhhhhccc---------------------cceeeee-cCCceEEEecCCceEEEeccC
Confidence            999999998887765543220                     1122333 367899999999999999875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.9e-23  Score=166.46  Aligned_cols=262  Identities=17%  Similarity=0.249  Sum_probs=180.5

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------------
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------------   76 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------   76 (303)
                      ..|+++.|+|.. ..+++|+.|++++||.+....+.   ....+--...+|....+.|+|+                   
T Consensus       214 ~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~---~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  214 GGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNP---KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CCceEEEecCCC-ceEEEecCCCcEEEEEecCccCh---hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            679999999875 68999999999999988532111   1111111223444444544443                   


Q ss_pred             --------eeccc-CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC
Q 048118           77 --------FVGHT-KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW  147 (303)
Q Consensus        77 --------~~~h~-~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  147 (303)
                              ..++. ..+....+++++.+++..|..|.|.|-...+.+.....   .-++.+..++|+.++  ..++.++.
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---KieG~v~~~~fsSds--k~l~~~~~  364 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---KIEGVVSDFTFSSDS--KELLASGG  364 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---eeccEEeeEEEecCC--cEEEEEcC
Confidence                    01222 13445566677777777777777776543322221111   124457889999776  46777888


Q ss_pred             CCcEEEEECCCceeEEEEcCCCC-CeeEEEECCCCCEEEEEeCCCeEEEEeCCC------CceEEEe-cCCCeEEEEEEc
Q 048118          148 DRTVKVWNLSNCKLRATLAGHTG-YVNTVAVSPDGSLCASGGKDGVILLWDLAE------GKRLYSL-DAGAVIHALCFS  219 (303)
Q Consensus       148 dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~------~~~~~~~-~~~~~v~~~~~s  219 (303)
                      +|.|.+||++...+...+....+ .-++++.++++.+||+|+..|.|.|||..+      .+++.++ +....|.+++|+
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence            99999999999988887765322 236788899999999999999999999653      3455544 345789999999


Q ss_pred             CCCeEEEEEc---CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          220 PNRYWLCAAT---EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       220 ~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      ++.++||.++   .+.+++=.+-+..+.++....                 ...-.++++++|||.+.+||.|..+|.|+
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             cchhhhhhhhhccccceEEEeccceeeeccCCCC-----------------CCcccceEEEEecCCCceEEeecCCCcee
Confidence            9999998765   456777766655554443321                 11234678999999999999999999999


Q ss_pred             EEecccC
Q 048118          297 VWGIGRY  303 (303)
Q Consensus       297 ~w~~~~~  303 (303)
                      +|.+.+|
T Consensus       508 l~kL~hy  514 (514)
T KOG2055|consen  508 LFKLHHY  514 (514)
T ss_pred             eEeeccC
Confidence            9999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.1e-23  Score=159.01  Aligned_cols=213  Identities=23%  Similarity=0.334  Sum_probs=163.1

Q ss_pred             eeecccccccccceeeeec-CCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118            5 LVLKGTMRAHTDMVTAIAT-PIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD   83 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~-~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~   83 (303)
                      ..++.+|.||.++|+.++| +|.-+.+||+|+.||.+.||+-..+.                     +.....+..|...
T Consensus        46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---------------------w~k~~e~~~h~~S  104 (299)
T KOG1332|consen   46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---------------------WTKAYEHAAHSAS  104 (299)
T ss_pred             ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc---------------------hhhhhhhhhhccc
Confidence            4677889999999999986 45566899999999999999764321                     1111234579999


Q ss_pred             EEEEEEeeC--CCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCC------------CEEEEEeCC
Q 048118           84 VLSVAFSID--NRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQ------------PTIVSASWD  148 (303)
Q Consensus        84 i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~d  148 (303)
                      |++++|.|.  |-.|++++.||.|.|.+.... ..........|.-.+++++|.|....            ..|++|+.|
T Consensus       105 VNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD  184 (299)
T KOG1332|consen  105 VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD  184 (299)
T ss_pred             ceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc
Confidence            999999986  468999999999999987654 22222334578888999999986321            359999999


Q ss_pred             CcEEEEECCCce--eEEEEcCCCCCeeEEEECCCC----CEEEEEeCCCeEEEEeCCCCceE--EEe--cCCCeEEEEEE
Q 048118          149 RTVKVWNLSNCK--LRATLAGHTGYVNTVAVSPDG----SLCASGGKDGVILLWDLAEGKRL--YSL--DAGAVIHALCF  218 (303)
Q Consensus       149 g~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~--~~~--~~~~~v~~~~~  218 (303)
                      ..|+||+..++.  ...++.+|.+.|..++|.|.-    .++++++.||+|.||-.+.....  .++  .-...+..++|
T Consensus       185 n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW  264 (299)
T KOG1332|consen  185 NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW  264 (299)
T ss_pred             cceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE
Confidence            999999987753  445688999999999999953    37899999999999987532111  111  12467999999


Q ss_pred             cCCCeEEEEE-cCCcEEEEeC
Q 048118          219 SPNRYWLCAA-TEQSIKIWDL  238 (303)
Q Consensus       219 s~~~~~l~~~-~~~~i~iwd~  238 (303)
                      |..|++|+++ .|+++.+|.-
T Consensus       265 S~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  265 SLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             eccccEEEEecCCcEEEEEEe
Confidence            9999988766 5889999964

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=2.5e-23  Score=179.04  Aligned_cols=217  Identities=26%  Similarity=0.373  Sum_probs=173.2

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +-+.++|.++|+.++..|++. .++|||.|.+|++|+..-.....+.....+.-+           ..+...-+..|.|+
T Consensus       447 ~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-----------~~rtLel~ddvL~v  514 (888)
T KOG0306|consen  447 VETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-----------HTRTLELEDDVLCV  514 (888)
T ss_pred             hhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeec-----------cceEEeccccEEEE
Confidence            345779999999999999875 699999999999999852211111111111111           11223356789999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      .++|+|++|+.+--|++|+||=+.+  .+.....-+|.-+|.|+..+|++  ..+++|+.|..|++|-+.-+.|...+-+
T Consensus       515 ~~Spdgk~LaVsLLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  515 SVSPDGKLLAVSLLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             EEcCCCcEEEEEeccCeEEEEEecc--eeeeeeecccccceeEEeccCCc--CeEEeccCCCceEEeccccchhhhhhhc
Confidence            9999999999999999999997643  22233335789999999999986  5799999999999999999999999999


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCC
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCA-ATEQSIKIWDLES  240 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  240 (303)
                      |.+.|.++.|-|....+.+++.|+.|+-||....+.++.+.. ...|++++.+|+|.++++ +.|.+|++|....
T Consensus       591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            999999999999999999999999999999988888888754 578999999999866554 5689999998643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=7.2e-24  Score=168.31  Aligned_cols=241  Identities=18%  Similarity=0.317  Sum_probs=176.9

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      +...++++|.+.|..|++..   +.++|+|.|.+|+.|.+...      +...                  +. -.+.+.
T Consensus       100 ~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~------p~~t------------------il-g~s~~~  151 (433)
T KOG0268|consen  100 ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP------PLHT------------------IL-GKSVYL  151 (433)
T ss_pred             hhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC------ccee------------------ee-cccccc
Confidence            45668999999999999874   46999999999999987531      1111                  11 134556


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      .|+-+..+..++|||++  |.|||..-. +...+.   -....|.+++|+|.- ...|++++.|++|.+||++..+++..
T Consensus       152 gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms---wG~Dti~svkfNpvE-TsILas~~sDrsIvLyD~R~~~Pl~K  225 (433)
T KOG0268|consen  152 GIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS---WGADSISSVKFNPVE-TSILASCASDRSIVLYDLRQASPLKK  225 (433)
T ss_pred             ccccccccccccccCce--eeecccccCCccceee---cCCCceeEEecCCCc-chheeeeccCCceEEEecccCCccce
Confidence            77777778899999975  899997432 222222   234568999999964 45788888999999999998877655


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eEEEe-cCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCC
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSL-DAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESK  241 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~  241 (303)
                      +.- ...-+.++|+|++--|.+|++|..++.+|++.-+ ++... .+.+.|.++.|||.|+ +++++.|.+|+||..+.+
T Consensus       226 Vi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  226 VIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             eee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            432 2345679999987788999999999999998644 33332 4467899999999986 555667999999998765


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .--..+-                   ...--.+.++.||.|.+++++||+|+.||+|.-
T Consensus       305 ~SRdiYh-------------------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  305 HSRDIYH-------------------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             cchhhhh-------------------HhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            3221110                   001123567999999999999999999999964

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=9.4e-25  Score=186.95  Aligned_cols=236  Identities=26%  Similarity=0.462  Sum_probs=193.1

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      +.-+|..+|.++.. ....+.+++|+.|..+-+|.+.+....                       -.|.+|+++|-++.|
T Consensus        23 ~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------------~S~~~hespIeSl~f   78 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAI-----------------------TSLTGHESPIESLTF   78 (825)
T ss_pred             hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchh-----------------------heeeccCCcceeeec
Confidence            56678888888876 345678999999999999987542211                       126789999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      ++...++++|.++|+|++||+..  .+.+...-+|...+..+.|+|.+  .++++|+.|..+.+||.+..-+...+.+|.
T Consensus        79 ~~~E~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~  154 (825)
T KOG0267|consen   79 DTSERLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHT  154 (825)
T ss_pred             CcchhhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCc
Confidence            99999999999999999999853  22222334677788999999986  367889999999999999888999999999


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeee
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~  247 (303)
                      ..+..++|+|+|++++++++|.+++|||+..|+.+..|. ....+.++.|+|...+++. +.|+.+++||+++-+++...
T Consensus       155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence            999999999999999999999999999999999988887 5678999999999887765 56999999999988776544


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      +..                    ...+.+..|+|+++.+++|.++.
T Consensus       235 ~~~--------------------~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  235 KPE--------------------TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCc--------------------cCCceeeeecCCceeeecCchhh
Confidence            321                    12346788999999998887654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.8e-22  Score=164.85  Aligned_cols=237  Identities=22%  Similarity=0.406  Sum_probs=177.8

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      ++|.+.|.+++.++++ .+||||+.|..|.||+..+.+..                       ..+.+|.+.|.+++|-.
T Consensus       199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv-----------------------~~~~ghr~~V~~L~fr~  254 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHV-----------------------KVFKGHRGAVSSLAFRK  254 (479)
T ss_pred             ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchh-----------------------hcccccccceeeeeeec
Confidence            4899999999999876 69999999999999998765421                       23678999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY  171 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  171 (303)
                      ....+++++.|.+|++|++....  .+....+|...|..+.-..-  ...+-+|+.|+++++|++ .......+.++.+.
T Consensus       255 gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~s  329 (479)
T KOG0299|consen  255 GTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGS  329 (479)
T ss_pred             CccceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCC
Confidence            88999999999999999975322  22233467777887755432  234555669999999999 44445567888889


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-------------CCeEEEEEEcCCCeEEEEEc-CCcEEEEe
Q 048118          172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-------------GAVIHALCFSPNRYWLCAAT-EQSIKIWD  237 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd  237 (303)
                      +.+++|-. ..+|++|+.+|.|.+|++.+.+++++...             ..+|++++..|...++|+++ +|.|++|-
T Consensus       330 idcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  330 IDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             eeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            99999975 46889999999999999999888876521             12788999999888887765 89999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeE
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVI  295 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v  295 (303)
                      +..+.--  +.+              ...++ -..++++++|+++|+.+++| +...++
T Consensus       409 i~~g~r~--i~~--------------l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  409 IEDGLRA--INL--------------LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             ecCCccc--cce--------------eeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence            8766210  100              01111 23478999999999966655 444443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=3.9e-23  Score=176.36  Aligned_cols=195  Identities=21%  Similarity=0.384  Sum_probs=163.8

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ..+|++|...|++++..-  ...+++||-|.++++|.+.+...                         .+.+|+.+|+++
T Consensus        94 ~~~LkgH~snVC~ls~~~--~~~~iSgSWD~TakvW~~~~l~~-------------------------~l~gH~asVWAv  146 (745)
T KOG0301|consen   94 LYTLKGHKSNVCSLSIGE--DGTLISGSWDSTAKVWRIGELVY-------------------------SLQGHTASVWAV  146 (745)
T ss_pred             hhhhhccccceeeeecCC--cCceEecccccceEEecchhhhc-------------------------ccCCcchheeee
Confidence            457999999999998653  34599999999999997753211                         256899999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      ..-|++ .++||++|+.|++|.-. ..   .....+|++.|+.+++-++.   -|++++.||.|+.|++ +++++.++.+
T Consensus       147 ~~l~e~-~~vTgsaDKtIklWk~~-~~---l~tf~gHtD~VRgL~vl~~~---~flScsNDg~Ir~w~~-~ge~l~~~~g  217 (745)
T KOG0301|consen  147 ASLPEN-TYVTGSADKTIKLWKGG-TL---LKTFSGHTDCVRGLAVLDDS---HFLSCSNDGSIRLWDL-DGEVLLEMHG  217 (745)
T ss_pred             eecCCC-cEEeccCcceeeeccCC-ch---hhhhccchhheeeeEEecCC---CeEeecCCceEEEEec-cCceeeeeec
Confidence            999988 78899999999999752 22   23345799999999998874   4899999999999999 7788888999


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLES  240 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~  240 (303)
                      |+..+.+++..+++..++++++|++++||+..  ++.+.+..+ ..+.++.+-++|.++++++||.|++|-.+.
T Consensus       218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            99999999988888899999999999999875  666666554 478888888999999999999999998763

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=163.56  Aligned_cols=203  Identities=21%  Similarity=0.293  Sum_probs=156.6

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.+|..+|..+.|+||.+++++|+.|..+++||..+........ ..+...+.+++|.|++  ..+++|+.|+.+..||+
T Consensus       265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCC--ceeEecCCCCcEEEecC
Confidence            45899999999999999999999999999999986543322211 2244568899999997  46999999999999998


Q ss_pred             CCceeEEEEcCC-CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcCCcEE
Q 048118          157 SNCKLRATLAGH-TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATEQSIK  234 (303)
Q Consensus       157 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~  234 (303)
                      ..+. ....++- ...|.++++.+||+++++.+.|..+++++.++......+....++++++.|.++.++ +.-.++.|+
T Consensus       342 Dgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~  420 (519)
T KOG0293|consen  342 DGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIH  420 (519)
T ss_pred             Ccch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence            6543 3333332 356899999999999999999999999999877666566667899999999998655 455789999


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEEEEecc
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +||++..+++.++.-+                  ....++-.-+|.- +..++++||+|+.|++|+.-
T Consensus       421 LWDl~e~~lv~kY~Gh------------------kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  421 LWDLEENKLVRKYFGH------------------KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             EeecchhhHHHHhhcc------------------cccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence            9999987776554321                  1122333344544 34799999999999999853

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7e-23  Score=173.69  Aligned_cols=210  Identities=26%  Similarity=0.392  Sum_probs=169.3

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ...|+.|.+=|+.+...-. ++.|+++|.|-+|++|+...+. .  .+..                  .+..|++-|.|+
T Consensus        66 ~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~-~--~c~s------------------tir~H~DYVkcl  123 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDN-T--FCMS------------------TIRTHKDYVKCL  123 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCc-c--hhHh------------------hhhcccchheee
Confidence            5578889988888877644 4689999999999999987542 1  1222                  234577778888


Q ss_pred             EE-eeCCCEEEEEeCCCcEEEEecCCcee--------eee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           88 AF-SIDNRQIVSASRDRTIKLWNTLGECK--------YTI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        88 ~~-~~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      ++ .++..++|+||.|+.|.+||+.....        .+. ....++...|.+++.++.+  ..+++|+.++.+++||.+
T Consensus       124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~--t~ivsGgtek~lr~wDpr  201 (735)
T KOG0308|consen  124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG--TIIVSGGTEKDLRLWDPR  201 (735)
T ss_pred             eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc--eEEEecCcccceEEeccc
Confidence            88 77888999999999999999863311        111 1122567789999999986  579999999999999999


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCe-EEEEEcCCcEEE
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRY-WLCAATEQSIKI  235 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~i~i  235 (303)
                      +++....+++|...|..+..+++|..++++|.||+|++||+...+++.++. +...|.++..+|+-. +.+++.||.|+.
T Consensus       202 t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  202 TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            999999999999999999999999999999999999999999999998874 345699998888754 445667999999


Q ss_pred             EeCCCC
Q 048118          236 WDLESK  241 (303)
Q Consensus       236 wd~~~~  241 (303)
                      =|+++.
T Consensus       282 Tdl~n~  287 (735)
T KOG0308|consen  282 TDLRNP  287 (735)
T ss_pred             cccCCc
Confidence            999875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.9e-22  Score=168.60  Aligned_cols=266  Identities=16%  Similarity=0.304  Sum_probs=186.9

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc------------
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------------   76 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------   76 (303)
                      ..++||++.|.+|+..|. +..|++||.||++++|.+..+-     +....+ ....|.+++|.|...            
T Consensus       394 lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgR-----cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGR-----CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecce-----EEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence            348999999999999985 5799999999999999987532     222211 111233333333210            


Q ss_pred             --------------------------------------------------eecccCCEEEEEEeeCCCEEEEEeCC---C
Q 048118           77 --------------------------------------------------FVGHTKDVLSVAFSIDNRQIVSASRD---R  103 (303)
Q Consensus        77 --------------------------------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d---~  103 (303)
                                                                        .+.|...|..+.|+..|.||+|...+   .
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                                                              12567789999999999999998775   4


Q ss_pred             cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCE
Q 048118          104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL  183 (303)
Q Consensus       104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  183 (303)
                      .|.|.++.....  ...+....+.+.++.|+|..  .+++.+ ....|++||+..+.++.++......|..++++|.|..
T Consensus       547 ~VliHQLSK~~s--Q~PF~kskG~vq~v~FHPs~--p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  547 SVLIHQLSKRKS--QSPFRKSKGLVQRVKFHPSK--PYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN  621 (733)
T ss_pred             eEEEEecccccc--cCchhhcCCceeEEEecCCC--ceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence            677888743211  12222344568999999975  455544 5679999999888777777666778999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCc-eEEEe-cCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCC-CCceeeeeeecccccccccc
Q 048118          184 CASGGKDGVILLWDLAEGK-RLYSL-DAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLE-SKSIVEDLKVDLKTEAEKSE  259 (303)
Q Consensus       184 l~~~~~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~  259 (303)
                      |+.++.|+.+..+|+.-+. +.+++ .+...+++++|++.-.++|+++ ||.+.+|--. ...++.+            +
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn------------p  689 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN------------P  689 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC------------C
Confidence            9999999999999997543 33333 2456789999999888888776 5888887521 1111100            0


Q ss_pred             Cccceeeccccc----eeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          260 ATTATTTIKKKN----IYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       260 ~~~~~~~~~~~~----~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      .-.+...+++|.    ..+.+..|+|...+|++++.||+|++|
T Consensus       690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            011122233333    347788899999999999999999998

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-21  Score=159.71  Aligned_cols=214  Identities=24%  Similarity=0.323  Sum_probs=165.8

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS--  157 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~--  157 (303)
                      -.++|.+++-+|.|.+++.|+..+.|.+|.+.......+.  .+|-..|+|+.|+-++  ..+++|+.||.|.+|++-  
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dg--s~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDG--SHIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCC--cEEEecCCCccEEEEEEEee
Confidence            3467999999999999998889999999998765443332  5677889999999886  579999999999999762  


Q ss_pred             -------CceeEEEEcCCCCCeeEEEECCCC--CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EE
Q 048118          158 -------NCKLRATLAGHTGYVNTVAVSPDG--SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CA  227 (303)
Q Consensus       158 -------~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~  227 (303)
                             +-++...+..|.-+|+++...+.|  ..++++|.|.++++||+..+..+.++..+..+.+++.+|.+..+ ++
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence                   235678889999999999987753  58999999999999999999999999888999999999987655 55


Q ss_pred             EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccce--eEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          228 ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI--YCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       228 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+|.|++.++.+-.--.   ..... .......+....+.+|..  .+++++.+-||.+|++|+.||.|++||+.
T Consensus       236 t~~G~I~~~~~~~~~~~~---~~v~~-k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSGQS---AGVNQ-KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             CCcceEEeeehhcCCccc---ccccc-cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            679999998875432100   00000 011112222333444444  78999999999999999999999999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.2e-22  Score=158.46  Aligned_cols=205  Identities=22%  Similarity=0.352  Sum_probs=158.0

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-----ee-----------eeeecCCCCccceEEEEEcCCCCCC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-----CK-----------YTIQEGDAHTEWVSCVRFSPNTLQP  140 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-----~~-----------~~~~~~~~~~~~i~~~~~~~~~~~~  140 (303)
                      +..|+++..+.+|++||.+++||+.|.+|++.|....     .+           ..+...-.|.+.|+++.|+|..  .
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre--~  185 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE--T  185 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh--h
Confidence            4679999999999999999999999999999996410     00           0111223477889999999974  5


Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEc--CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEE
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLA--GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIH  214 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~  214 (303)
                      .+++|+.|++|++||+.+....+.++  ....+|.++.|+|.|.+|++|..-.++++||+.+-|+.....    ....|.
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            79999999999999997543322221  134689999999999999999999999999999988765543    346799


Q ss_pred             EEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          215 ALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       215 ~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      ++.+++.+. ++.++.||.|++||--+++.+..+...                 . ....+.+..|.-+++++++.+.|.
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-----------------H-~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-----------------H-GGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-----------------c-CCceeeeEEEccCCeEEeecCCcc
Confidence            999999975 556667999999996655544433210                 1 123356778999999999999999


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      .|++|.++
T Consensus       328 ~vkLWEi~  335 (430)
T KOG0640|consen  328 TVKLWEIS  335 (430)
T ss_pred             eeeeeeec
Confidence            99999885

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=5.9e-22  Score=159.61  Aligned_cols=182  Identities=24%  Similarity=0.315  Sum_probs=142.2

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      ..+....+.| .+|+.+.|.+...+.++||+.|..|++|.+...+...+.         ..|..+     ..+..|...|
T Consensus         4 ~~~ei~wH~~-~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------~~V~y~-----s~Ls~H~~aV   68 (434)
T KOG1009|consen    4 YPIEISWHDH-EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------MKVEYL-----SSLSRHTRAV   68 (434)
T ss_pred             eeeEEEecCC-CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------eeEEEe-----ecccCCccee
Confidence            3444456655 589999999877779999999999999998765432211         111111     1355799999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecC--------C-----ceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTL--------G-----ECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~--------~-----~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      +.+.|+|+|+++++|+.++.|.+|...        .     .+.+ .......|...|..++|+|++  ..+++++.|.+
T Consensus        69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns  146 (434)
T KOG1009|consen   69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNS  146 (434)
T ss_pred             EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--ceeeeeeccce
Confidence            999999999999999999999999754        1     1112 122234577788999999986  67999999999


Q ss_pred             EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118          151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR  203 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  203 (303)
                      +++||+..++....+..|...+..++|.|.++++++-+.|+..+++.+...+.
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence            99999999999999999999999999999999999999998777777655443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=3.7e-21  Score=147.31  Aligned_cols=201  Identities=19%  Similarity=0.313  Sum_probs=161.3

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.||+-+++.+.++.+|.+|.+|+.|....||-....+..  -..++|+..|.|+..+.+.  ..+++|+.|.++++||.
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDV   81 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeecCCCceEEEEEecCCc--ceeeeccccceeEEEEc
Confidence            4689999999999999999999999999999975333332  2336899999999998875  47999999999999999


Q ss_pred             CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-----CCeEEEEeCC-------CCceEEEec-CCCeEEEEEEcCCCe
Q 048118          157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-----DGVILLWDLA-------EGKRLYSLD-AGAVIHALCFSPNRY  223 (303)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~-------~~~~~~~~~-~~~~v~~~~~s~~~~  223 (303)
                      .+++.+.+++- ..+|..+.|+++|++++....     .+.|.++|++       ..+++..+. ..+.+..+-|.|-+.
T Consensus        82 ~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   82 ETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            99999888774 568999999999998876654     3689999998       334455554 357788899999875


Q ss_pred             EE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          224 WL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       224 ~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+ ++..+|+|..||+++++.+-+.                   .+.|...++++.++||..++++||.|.+.++||..
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s-------------------~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDS-------------------DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeec-------------------hhhhccccccccccCCcceEEecccCccceeeecc
Confidence            55 5557999999999998554321                   12234457889999999999999999999999974

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=3.4e-23  Score=162.62  Aligned_cols=221  Identities=22%  Similarity=0.317  Sum_probs=165.7

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-e----eeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-C----KYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK  152 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~----~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~  152 (303)
                      +.++-+-|..|+|+|.++++|+.||.|.+|+.... .    +++.+ ...-+..+|.|+.|+.+.  ..+++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEE
Confidence            45566789999999999999999999999996422 1    11111 112356789999999986  4689999999999


Q ss_pred             EEECCCceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCe-EEEEEc
Q 048118          153 VWNLSNCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRY-WLCAAT  229 (303)
Q Consensus       153 iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~-~l~~~~  229 (303)
                      +|.+.++++...+. .|...|+++.|+.|+..+++++.|.++++-.+++|+++..+.. .+.|+...|.++|. ++.+++
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            99999999988886 7999999999999999999999999999999999999888854 57899999999985 556778


Q ss_pred             CCcEEEEeCCCCceeeeeeecccc----------c-ccc-----ccCccceeecc-----------ccceeEEEEEEcCC
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKT----------E-AEK-----SEATTATTTIK-----------KKNIYCTSLNWSVD  282 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~----------~-~~~-----~~~~~~~~~~~-----------~~~~~~~~~~~sp~  282 (303)
                      ||.|++|+.++.+.+..++.....          . .+.     ...+.....++           .......+...||.
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCC
Confidence            999999999887666554321100          0 000     00000000011           01111245668999


Q ss_pred             CCEEEEeecCCeEEEEecc
Q 048118          283 GSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       283 ~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |.++.+.+.|+.+..|.+.
T Consensus       449 GewiYcigED~vlYCF~~~  467 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVL  467 (508)
T ss_pred             CcEEEEEccCcEEEEEEee
Confidence            9999999999999998763

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=169.57  Aligned_cols=269  Identities=22%  Similarity=0.322  Sum_probs=197.7

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEe--------------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL--------------   71 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------   71 (303)
                      +++..++.-.+.|+.++|..++...+|+|+..|.+.+||+.+.....    .....|...+....+              
T Consensus       235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~----v~~nah~~sv~~~~fl~~epVl~ta~~Dn  310 (910)
T KOG1539|consen  235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN----VTRNAHYGSVTGATFLPGEPVLVTAGADN  310 (910)
T ss_pred             cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee----eeeccccCCcccceecCCCceEeeccCCC
Confidence            34556664458999999999888999999999999999997542211    111122111111111              


Q ss_pred             --------CCCC--c----eecccCCEEEEEEe-eCCCEEEEEeCCCcEEEEecCCc-------e---------e--e--
Q 048118           72 --------SSDG--Q----FVGHTKDVLSVAFS-IDNRQIVSASRDRTIKLWNTLGE-------C---------K--Y--  116 (303)
Q Consensus        72 --------~~~~--~----~~~h~~~i~~i~~~-~~~~~l~t~~~d~~i~vw~~~~~-------~---------~--~--  116 (303)
                              +++|  +    -.||..+..+|.|. .+|..+.+++.|++.+.+.+..+       .         .  .  
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence                    1122  1    13899999999998 67888999999998887753100       0         0  0  


Q ss_pred             -------------------------eee----------c--------------CCCCccceEEEEEcCCCCCCEEEEEeC
Q 048118          117 -------------------------TIQ----------E--------------GDAHTEWVSCVRFSPNTLQPTIVSASW  147 (303)
Q Consensus       117 -------------------------~~~----------~--------------~~~~~~~i~~~~~~~~~~~~~~~~~~~  147 (303)
                                               ...          .              .+.....+.+++.++.+  +..+.|..
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG--NF~~IG~S  468 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG--NFVFIGYS  468 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC--ceEEEecc
Confidence                                     000          0              00011235566666654  56677889


Q ss_pred             CCcEEEEECCCceeEEEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeE
Q 048118          148 DRTVKVWNLSNCKLRATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW  224 (303)
Q Consensus       148 dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (303)
                      .|.|-+|+++.+-.+..+   ..|.++|++++....++.+++++.+|.+++||+.++..+..+..+..+..+.++....+
T Consensus       469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l  548 (910)
T KOG1539|consen  469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL  548 (910)
T ss_pred             CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence            999999999999888888   57999999999999899999999999999999999888888888888888877776544


Q ss_pred             E-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          225 L-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       225 l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      + ++..+-.|.++|..+.++++++                    .+|...+++++|||||++|++++.|++||+||+
T Consensus       549 ~a~~~ddf~I~vvD~~t~kvvR~f--------------------~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  549 LAIALDDFSIRVVDVVTRKVVREF--------------------WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             hhhhcCceeEEEEEchhhhhhHHh--------------------hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            4 5567789999999988876654                    345667899999999999999999999999998

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=1.7e-21  Score=166.50  Aligned_cols=281  Identities=22%  Similarity=0.375  Sum_probs=204.0

Q ss_pred             cceeecccccccccceeeeecCCCC--CcEEEEecCCCcEEEEEcccCc--c-------------c-cceee--------
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDN--SDMIVTASRDKSIIVWHLTKEE--K-------------T-YGVAR--------   56 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~--~~~~~t~s~d~~i~iw~~~~~~--~-------------~-~~~~~--------   56 (303)
                      +.+..+..++||.|-|..++|...+  .-+++++|.|..||||++....  .             . .....        
T Consensus       179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence            4566778899999999999998743  3589999999999999985321  0             0 00111        


Q ss_pred             --eeecCCCcceEEEEeCCCCc-e--------------------------------------------------------
Q 048118           57 --RRLTGHSHFVQDVVLSSDGQ-F--------------------------------------------------------   77 (303)
Q Consensus        57 --~~~~~~~~~i~~~~~~~~~~-~--------------------------------------------------------   77 (303)
                        ..+.+|.++|+.+.|.|++. +                                                        
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G  338 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG  338 (764)
T ss_pred             hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence              22348999999999887651 0                                                        


Q ss_pred             -------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeeecCCCCccceEEEEEcCC
Q 048118           78 -------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        78 -------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~  136 (303)
                                         -||.+.|..++|+|.|+++++.|.|.+=|++-..+...  -.+..-..|-....|++|-+.
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence                               18899999999999999999999999999986432211  112222245556889988774


Q ss_pred             CCCCEEEEEeCCCcEEEEECC-------------------------------------------Ccee------------
Q 048118          137 TLQPTIVSASWDRTVKVWNLS-------------------------------------------NCKL------------  161 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~-------------------------------------------~~~~------------  161 (303)
                      .  ..+++|..+..+|+|+.-                                           ++..            
T Consensus       419 ~--~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  419 D--LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             C--ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            3  468899999999998631                                           0000            


Q ss_pred             ---------------------EEEEcCCCCCeeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceEEEec-CCCeEE
Q 048118          162 ---------------------RATLAGHTGYVNTVAVSPDGSLCASGGKDG-----VILLWDLAEGKRLYSLD-AGAVIH  214 (303)
Q Consensus       162 ---------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~-~~~~v~  214 (303)
                                           .+++.+|.-.|++++.+|+++++|+++...     .|++|+..+-..++.+. +...|.
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT  576 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT  576 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence                                 011347888899999999999999987653     68899987655555443 456899


Q ss_pred             EEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          215 ALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       215 ~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      .++||||+. +|+++-|....+|....... ...+               ....+.|..-+++.+|+|++++++|+|.|.
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~~---------------fa~~k~HtRIIWdcsW~pde~~FaTaSRDK  640 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEFR---------------FACLKAHTRIIWDCSWSPDEKYFATASRDK  640 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccc-hhhh---------------hccccccceEEEEcccCcccceeEEecCCc
Confidence            999999985 55677899999999743211 1111               112456777789999999999999999999


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      +|++|.+.
T Consensus       641 ~VkVW~~~  648 (764)
T KOG1063|consen  641 KVKVWEEP  648 (764)
T ss_pred             eEEEEecc
Confidence            99999764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=1.1e-21  Score=175.32  Aligned_cols=223  Identities=24%  Similarity=0.407  Sum_probs=167.9

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceee--eeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVAR--RRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ..+..|.+.|+|+.|+|++ .+||+||.|+.|.+|+.... .......  ........+ .+     -..+.+|...|..
T Consensus        63 ~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~w-k~-----~~~l~~H~~DV~D  134 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESW-KV-----VSILRGHDSDVLD  134 (942)
T ss_pred             eeeccccCceeEEEECCCC-CeEeeccCcceEEEeeeccc-CCccccccccccccccee-eE-----EEEEecCCCccce
Confidence            4578899999999999875 69999999999999998741 1000110  001111111 01     1146789999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee-----
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL-----  161 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~-----  161 (303)
                      ++|+|++.++++++.|++|.+|+..+-  ......+.|...|..+.|.|-+  .+|++-+.|++|++|+..+...     
T Consensus       135 v~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  135 VNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             eccCCCccEEEEecccceEEEEccccc--eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeec
Confidence            999999999999999999999997543  2233446788889999999976  5899999999999998543211     


Q ss_pred             -----------------------------------------------EEEEcCCCCCeeEEEECCC-----CC-------
Q 048118          162 -----------------------------------------------RATLAGHTGYVNTVAVSPD-----GS-------  182 (303)
Q Consensus       162 -----------------------------------------------~~~~~~~~~~i~~~~~~~~-----~~-------  182 (303)
                                                                     -..+.+|..++.+++|+|.     .+       
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence                                                           1125689999999999872     11       


Q ss_pred             -----EEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCce
Q 048118          183 -----LCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       183 -----~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~  243 (303)
                           .+|+|+.|++|.||.....+++..+.  ....|.+++|+|||. +++++.||+|.++..+..++
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence                 56889999999999987777766553  357899999999995 66778899999999876543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.3e-21  Score=159.78  Aligned_cols=257  Identities=20%  Similarity=0.267  Sum_probs=180.1

Q ss_pred             cccccccceeeeecCCCCC-cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNS-DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~-~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+-+...|++++|+|... .++|+|..-|+|-+||+...++....           +.        -+..|.++|.+|.
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-----------v~--------~f~~hs~~Vs~l~  241 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-----------VY--------LFTPHSGPVSGLK  241 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-----------eE--------EeccCCccccceE
Confidence            3566778999999999655 78999999999999999522221100           00        2457899999999


Q ss_pred             EeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee-EEEEc
Q 048118           89 FSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL-RATLA  166 (303)
Q Consensus        89 ~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~-~~~~~  166 (303)
                      |+|.. ..+++.+.||+|++-|+.+.....+...+.....+..+.|+.+.  ..++.+..=|...+||++.... ...+.
T Consensus       242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~--~~vl~~~~~G~f~~iD~R~~~s~~~~~~  319 (498)
T KOG4328|consen  242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES--RSVLFGDNVGNFNVIDLRTDGSEYENLR  319 (498)
T ss_pred             ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC--ccEEEeecccceEEEEeecCCccchhhh
Confidence            99964 68999999999999998654322222222234456667776653  3456666667999999987654 45566


Q ss_pred             CCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-----eEEEecCCCeEEEEEEcCC-CeEEEEEcCCcEEEEeCC
Q 048118          167 GHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGK-----RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~  239 (303)
                      -|...|.+++++|... +||+++.|++++|||++.-.     .+.+..+.-.|.+..|||. +.+++.+.|..|+|||..
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            7888999999999665 68999999999999997522     2566677889999999997 477788899999999974


Q ss_pred             C--CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          240 S--KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       240 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      -  ........+.  +.   .....+        ....-..|.|+..++++|-.-..|-++|-
T Consensus       400 ~~sa~~~p~~~I~--Hn---~~t~Rw--------lT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  400 CISAKDEPLGTIP--HN---NRTGRW--------LTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             cccccCCccceee--cc---Cccccc--------ccchhheeCCCccEEEEeccCcceeEEcC
Confidence            0  0000000000  00   000001        11123569999999999988888888864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=153.87  Aligned_cols=211  Identities=21%  Similarity=0.336  Sum_probs=153.3

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee---eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY---TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK  152 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~  152 (303)
                      .+++|.++|++++|+.+|++|+|++.|+.|++|++..-...   .+.. ...-+-.+.+.|.|+.. ..+++.-....++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~-s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCK-SVVVSVKRGNKLC  158 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcc-eEEEEEccCCEEE
Confidence            46799999999999999999999999999999997532111   1110 01111246788999863 4666777778899


Q ss_pred             EEECCCce---eEE---------EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEc
Q 048118          153 VWNLSNCK---LRA---------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFS  219 (303)
Q Consensus       153 iwd~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s  219 (303)
                      +|.+...+   ...         -.+.|.-.+-.+.....+.+|++++.|..|.+|+++ |+.+..++.. ..-+..+.|
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            99764321   110         012345566677777788999999999999999998 8888888653 455678899


Q ss_pred             CCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          220 PNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       220 ~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      |+|.+++++ ..-.+++|..--++--   .         -........+++|...+..++|||+...+++.|.||++|+|
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG---~---------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDG---T---------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCc---c---------hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence            999887665 4678999986322110   0         01112235678889999999999999999999999999999


Q ss_pred             ecc
Q 048118          299 GIG  301 (303)
Q Consensus       299 ~~~  301 (303)
                      |++
T Consensus       306 dtd  308 (420)
T KOG2096|consen  306 DTD  308 (420)
T ss_pred             ecc
Confidence            984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=2.3e-20  Score=154.43  Aligned_cols=264  Identities=19%  Similarity=0.236  Sum_probs=189.4

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeec-CCCcceEEEEeCCCCc--------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT-GHSHFVQDVVLSSDGQ--------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~--------   76 (303)
                      +..+..+..++.|....|+|..+++++|++. +.+.+|+...+....  ....+. .....|.++.+.+++.        
T Consensus       191 ~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k--~~~~fek~ekk~Vl~v~F~engdviTgDS~G  267 (626)
T KOG2106|consen  191 AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVK--RQGIFEKREKKFVLCVTFLENGDVITGDSGG  267 (626)
T ss_pred             hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEE--EeeccccccceEEEEEEEcCCCCEEeecCCc
Confidence            3455667777889999999999999999988 689999887543211  111111 1125667777766553        


Q ss_pred             ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118           77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT  141 (303)
Q Consensus        77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  141 (303)
                                     ..+|.+.|.+++...+|.++ +|+.|..|..||-.- .+............|+.+.-..    ..
T Consensus       268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~----~d  341 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGK----GD  341 (626)
T ss_pred             eEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc-cccccccCchhcCCeeEEecCC----Cc
Confidence                           23899999999999998765 499999999998321 1111111112234566664332    12


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN  221 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~  221 (303)
                      ++.|.....|..=.++++- .....+|....+.++.+|+.+++++++.|+.+++|+  ..+.+.+.....++.++.|+|.
T Consensus       342 i~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS  418 (626)
T ss_pred             EEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCc
Confidence            6666666666544444332 334567888999999999999999999999999999  6677777777889999999999


Q ss_pred             CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          222 RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       222 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+++....|...+.|.++..++..-.                     .+..++.++|+|+|.+||+|+.|+.|.+|.++
T Consensus       419 g~va~Gt~~G~w~V~d~e~~~lv~~~~---------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  419 GVVAVGTATGRWFVLDTETQDLVTIHT---------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             ceEEEeeccceEEEEecccceeEEEEe---------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence            955555678999999999876654211                     13345779999999999999999999999875


Q ss_pred             c
Q 048118          302 R  302 (303)
Q Consensus       302 ~  302 (303)
                      +
T Consensus       478 ~  478 (626)
T KOG2106|consen  478 A  478 (626)
T ss_pred             C
Confidence            3

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.9e-22  Score=172.25  Aligned_cols=248  Identities=22%  Similarity=0.355  Sum_probs=177.7

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-CCCE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQ   95 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~   95 (303)
                      ...+|+.+++. ..++-++. ..++++.+.+........... .....               -.-....+.|+. ...+
T Consensus        41 ~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~-k~kqn---------------~~~S~~DVkW~~~~~Nl  102 (839)
T KOG0269|consen   41 KANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRF-KTKQN---------------KFYSAADVKWGQLYSNL  102 (839)
T ss_pred             ccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeec-ccccc---------------eeeehhhcccccchhhh
Confidence            35667777664 45555555 488999887644332222110 00000               001234566764 3568


Q ss_pred             EEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118           96 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT  174 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  174 (303)
                      |||++..|.|.+||+... ....+.....|+..+.++.|++.. ..++++|+.||.|++||++..+...++.+..+.|..
T Consensus       103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD  181 (839)
T KOG0269|consen  103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD  181 (839)
T ss_pred             heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence            999999999999998542 112223445688889999999864 468999999999999999999888889888899999


Q ss_pred             EEECC-CCCEEEEEeCCCeEEEEeCCCCc-eEEEe-cCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeec
Q 048118          175 VAVSP-DGSLCASGGKDGVILLWDLAEGK-RLYSL-DAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       175 ~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      ++|+| .+.+|+++.+.|.+++||++... +..++ .+.++|.++.|+|++.|||++. |+.|+|||+.+.+......+.
T Consensus       182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn  261 (839)
T KOG0269|consen  182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN  261 (839)
T ss_pred             eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe
Confidence            99999 56789999999999999998643 33333 3568999999999999988765 899999999766544333221


Q ss_pred             cccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee--cCCeEEEEeccc
Q 048118          251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY--TDGVIRVWGIGR  302 (303)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs--~Dg~v~~w~~~~  302 (303)
                                         ....+..+.|-|... +||+++  .|-.|+|||+-|
T Consensus       262 -------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  262 -------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             -------------------ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence                               012346789999876 566665  488999999965

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=3e-22  Score=159.91  Aligned_cols=201  Identities=21%  Similarity=0.347  Sum_probs=154.0

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      .++++|...=+++.|+|-....++||-.-+.|.+|....+.  ..+.                  ...+.+|+..|-.++
T Consensus       205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~--W~vd------------------~~Pf~gH~~SVEDLq  264 (440)
T KOG0302|consen  205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS--WKVD------------------QRPFTGHTKSVEDLQ  264 (440)
T ss_pred             EEecccCccceeeecccccccccccCccccceEeeeeccCc--eeec------------------Cccccccccchhhhc
Confidence            35788999999999999666678998888899999876521  1111                  123567999999999


Q ss_pred             EeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---eeEEE
Q 048118           89 FSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC---KLRAT  164 (303)
Q Consensus        89 ~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~---~~~~~  164 (303)
                      |+|. ...|++|+-|++|+|||++...+......++|...|+.+.|+..-  +.|++|+.||+++|||++..   +++.+
T Consensus       265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~  342 (440)
T KOG0302|consen  265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVAT  342 (440)
T ss_pred             cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCccee
Confidence            9996 468999999999999999776554444447788899999998753  58999999999999999764   56788


Q ss_pred             EcCCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCc-------------------eEEEecCCCeEEEEEEcCC--C
Q 048118          165 LAGHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGK-------------------RLYSLDAGAVIHALCFSPN--R  222 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~-------------------~~~~~~~~~~v~~~~~s~~--~  222 (303)
                      ++.|..+|+++.|+|. ...|++++.|.+|.+||+.-..                   .++.......+..+.|++.  |
T Consensus       343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG  422 (440)
T KOG0302|consen  343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG  422 (440)
T ss_pred             EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence            9999999999999994 4578889999999999984321                   1111123345666788876  5


Q ss_pred             eEEEEEcCC
Q 048118          223 YWLCAATEQ  231 (303)
Q Consensus       223 ~~l~~~~~~  231 (303)
                      .++.++.+|
T Consensus       423 ~lvsTa~dG  431 (440)
T KOG0302|consen  423 LLVSTAIDG  431 (440)
T ss_pred             eEEEecccc
Confidence            666666665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3.2e-21  Score=163.72  Aligned_cols=229  Identities=22%  Similarity=0.414  Sum_probs=175.2

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA   99 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~   99 (303)
                      .+.|+.  .+.++.| -+..+.+|+.....                +..+.       ..+...|+++.|+++|.+|+.|
T Consensus       182 lldWss--~n~laVa-lg~~vylW~~~s~~----------------v~~l~-------~~~~~~vtSv~ws~~G~~LavG  235 (484)
T KOG0305|consen  182 LLDWSS--ANVLAVA-LGQSVYLWSASSGS----------------VTELC-------SFGEELVTSVKWSPDGSHLAVG  235 (484)
T ss_pred             Hhhccc--CCeEEEE-ecceEEEEecCCCc----------------eEEeE-------ecCCCceEEEEECCCCCEEEEe
Confidence            356763  3445544 44689999865432                11110       1126789999999999999999


Q ss_pred             eCCCcEEEEecCCceeeeeecCCC-CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-EcCCCCCeeEEEE
Q 048118          100 SRDRTIKLWNTLGECKYTIQEGDA-HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHTGYVNTVAV  177 (303)
Q Consensus       100 ~~d~~i~vw~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~  177 (303)
                      ..+|.|.|||.....  .+..... |...|.+++|+.    ..+.+|+.++.|..+|++..+.... +.+|...|..++|
T Consensus       236 ~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw  309 (484)
T KOG0305|consen  236 TSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW  309 (484)
T ss_pred             ecCCeEEEEehhhcc--ccccccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence            999999999974321  1222233 788899999984    3689999999999999987664444 8889999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCC-CeEEEEE---cCCcEEEEeCCCCceeeeeeeccc
Q 048118          178 SPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPN-RYWLCAA---TEQSIKIWDLESKSIVEDLKVDLK  252 (303)
Q Consensus       178 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~-~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~  252 (303)
                      ++++++||+|+.|+.+.|||....+++..+ .+...|.+++|+|- ..+||++   .|+.|++||..+++.+..+.    
T Consensus       310 s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----  385 (484)
T KOG0305|consen  310 SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----  385 (484)
T ss_pred             CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----
Confidence            999999999999999999999776666665 56789999999996 4566654   48899999999888776443    


Q ss_pred             cccccccCccceeeccccceeEEEEEEcCCCCEEE--EeecCCeEEEEecc
Q 048118          253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF--SGYTDGVIRVWGIG  301 (303)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~--~gs~Dg~v~~w~~~  301 (303)
                                       ...+|.+|.|++..+-|+  .|..++.|.||+..
T Consensus       386 -----------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p  419 (484)
T KOG0305|consen  386 -----------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP  419 (484)
T ss_pred             -----------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence                             245678899999987665  45778899999863

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.89  E-value=5.7e-21  Score=152.02  Aligned_cols=169  Identities=17%  Similarity=0.297  Sum_probs=141.4

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .|..|+++|.+++.+|+..+++||+.|....||+......  ......|...|.++.|+.++  .++++|+.+|.|++|+
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCc--eEEEecCCCccEEEEE
Confidence            4678999999999999999999999999999999865442  22234688899999999986  5899999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEE-EEEcCCcE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWL-CAATEQSI  233 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i  233 (303)
                      ..++.....+...-+.+.=+.|+|.+..|+.|+.||.+-+|.+.++...+.+. +..++.+=.|.|+|+.+ ++..||.|
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence            99988877776545667778999999999999999999999998865555554 45678888899998655 45579999


Q ss_pred             EEEeCCCCceeeeee
Q 048118          234 KIWDLESKSIVEDLK  248 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~  248 (303)
                      ++||.++++.+..+.
T Consensus       215 ~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEecCCCceeEEec
Confidence            999999998877665

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5e-21  Score=149.82  Aligned_cols=238  Identities=18%  Similarity=0.310  Sum_probs=172.3

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      -+++.|++- +.++|.|..||.+-|||+.....                       ..-+.+|..+|.+++|+++|+.|+
T Consensus        26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~i-----------------------ar~lsaH~~pi~sl~WS~dgr~Ll   81 (405)
T KOG1273|consen   26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRI-----------------------ARMLSAHVRPITSLCWSRDGRKLL   81 (405)
T ss_pred             cceEEeccC-cceeeeeccCCcEEEEEccccch-----------------------hhhhhccccceeEEEecCCCCEee
Confidence            467889976 47999999999999999975321                       113457999999999999999999


Q ss_pred             EEeCCCcEEEEecCCc-eeeeee---------cCCC-Cccce--------EEEE-------------------------E
Q 048118           98 SASRDRTIKLWNTLGE-CKYTIQ---------EGDA-HTEWV--------SCVR-------------------------F  133 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~-~~~~~~---------~~~~-~~~~i--------~~~~-------------------------~  133 (303)
                      |++.|..|++||+... +...+.         .... .+..|        .-+.                         |
T Consensus        82 tsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f  161 (405)
T KOG1273|consen   82 TSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF  161 (405)
T ss_pred             eecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc
Confidence            9999999999997432 111110         0000 00000        0111                         2


Q ss_pred             cCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-------c--e
Q 048118          134 SPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-------K--R  203 (303)
Q Consensus       134 ~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~--~  203 (303)
                      ++.  ..++++|...|.+.++|..+.+++..++-.. ..|..+.++-.|+.|+.-+.|+.||.|+++.-       +  +
T Consensus       162 dr~--g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~  239 (405)
T KOG1273|consen  162 DRR--GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP  239 (405)
T ss_pred             cCC--CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence            222  2478999999999999999999888776555 67889999999999999999999999998521       1  1


Q ss_pred             EEEe---cCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEE
Q 048118          204 LYSL---DAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN  278 (303)
Q Consensus       204 ~~~~---~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (303)
                      .+.+   .......+++||.+|.++++++  ...+++|....|.+++.+.-.                   ++....++.
T Consensus       240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-------------------kgE~l~DV~  300 (405)
T KOG1273|consen  240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-------------------KGEELLDVN  300 (405)
T ss_pred             hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC-------------------chhheeecc
Confidence            1111   1234567889999998887765  567999999999988766421                   112235688


Q ss_pred             EcCCCCEEEEeecCCeEEEEecc
Q 048118          279 WSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       279 ~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |+|-.+.+++- ..|.|++|...
T Consensus       301 whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  301 WHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             cccceeeeeec-cCCceEEEEee
Confidence            99998888877 78999999753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=5.5e-21  Score=161.98  Aligned_cols=261  Identities=18%  Similarity=0.275  Sum_probs=173.5

Q ss_pred             CCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCc
Q 048118           25 IDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRT  104 (303)
Q Consensus        25 ~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~  104 (303)
                      |..+.+|+.+-.||.|.++|..+..-..  ..+.+               ..+.+|...|..+.|.|....|++.+.|.+
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~--ee~~l---------------k~~~aH~nAifDl~wapge~~lVsasGDsT  123 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRL--EERQL---------------KKPLAHKNAIFDLKWAPGESLLVSASGDST  123 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcch--hhhhh---------------cccccccceeEeeccCCCceeEEEccCCce
Confidence            3566889999999999999875321000  00000               135679999999999997778999999999


Q ss_pred             EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--------------------e---
Q 048118          105 IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--------------------L---  161 (303)
Q Consensus       105 i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--------------------~---  161 (303)
                      +++||+............+|...+.+++|.|.. ...|++|+.||.|.+||++-..                    .   
T Consensus       124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eeeeeeccceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            999998655443333345788889999999975 4689999999999999975221                    0   


Q ss_pred             ----EEEEcCCCCCeeE---EEECCCCCEEEEEeC-CCeEEEEeCCCCceEEEec--------C----CCeEEEEEEcCC
Q 048118          162 ----RATLAGHTGYVNT---VAVSPDGSLCASGGK-DGVILLWDLAEGKRLYSLD--------A----GAVIHALCFSPN  221 (303)
Q Consensus       162 ----~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~--------~----~~~v~~~~~s~~  221 (303)
                          ......+...|.+   +-+..|...||+++. |+.|+|||++..+..+...        .    ...+.++.....
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence                0111223333444   445567788999887 9999999998765543321        1    112445555555


Q ss_pred             C-eEEEEEcCCcEEEEeCCCCce----------eeeeeeccccc-----------------cccccCccceeecccccee
Q 048118          222 R-YWLCAATEQSIKIWDLESKSI----------VEDLKVDLKTE-----------------AEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       222 ~-~~l~~~~~~~i~iwd~~~~~~----------~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  273 (303)
                      | .++|.++|++|++||+..-..          ...+.+.....                 ........+...+.+|...
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e  362 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE  362 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE
Confidence            5 566888999999999864321          11111110000                 0001111223345677888


Q ss_pred             EEEEEEcCCCC-EEEEeecCCeEEEEecccC
Q 048118          274 CTSLNWSVDGS-TLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       274 ~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~~~  303 (303)
                      ++.++|.|... -+++++.|-++++|++.+|
T Consensus       363 Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  363 VTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            89999988653 5788899999999999664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=1.9e-19  Score=150.03  Aligned_cols=242  Identities=13%  Similarity=0.082  Sum_probs=161.6

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+..|. .+..+.|+|++..++++++.|+.|++|+....+..     ..+                  ..+ ..+..++
T Consensus        25 ~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~------------------~~~-~~~~~~~   79 (300)
T TIGR03866        25 RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-----GTL------------------PSG-PDPELFA   79 (300)
T ss_pred             EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----Eec------------------cCC-CCccEEE
Confidence            3444443 46778999876555578888999999998643211     111                  111 1245678


Q ss_pred             EeeCCCEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-cEEEEECCCceeEEEEc
Q 048118           89 FSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLRATLA  166 (303)
Q Consensus        89 ~~~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~  166 (303)
                      |+|+++.++ +++.|+.+++||+.........  . ....+.+++|+|++  ..++++..++ .+..||..+++......
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--~-~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEI--P-VGVEPEGMAVSPDG--KIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--e-CCCCcceEEECCCC--CEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            999998665 4556899999998653221111  1 11235679999986  3566666654 56778988776655443


Q ss_pred             CCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeEEE--EEcCCcEEE
Q 048118          167 GHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYWLC--AATEQSIKI  235 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~--~~~~~~i~i  235 (303)
                      . ......+.|+|+++.|+++ ..++.|++||+++++.+..+..        ......++|+|++..+.  .+.++.|.+
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            2 2345778999999988554 4699999999998877655431        11234688999987543  345678999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEeccc
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGIGR  302 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~~~  302 (303)
                      ||+++++++..+..                     ...+..++|+|++.+|+++ +.+|.|++||+..
T Consensus       234 ~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       234 VDAKTYEVLDYLLV---------------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             EECCCCcEEEEEEe---------------------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            99988776543321                     0124568999999999876 5699999999854

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.5e-23  Score=175.42  Aligned_cols=200  Identities=25%  Similarity=0.466  Sum_probs=165.9

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      .+|...+.++..-..++.+++|+.|..+-+|.+....-  +....+|..+|.++.|++..  ..+++|..+|+|++||+.
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--i~S~~~hespIeSl~f~~~E--~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--ITSLTGHESPIESLTFDTSE--RLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCch--hheeeccCCcceeeecCcch--hhhcccccCCceeeeehh
Confidence            45666777776666678899999999999998743211  12245789999999999863  578899999999999999


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEc-CCcEEE
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAAT-EQSIKI  235 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~~~i~i  235 (303)
                      ..+..+++.+|...+.++.|+|-+.+++.|+.|+-+++||.+..-+.+.+... ..+..+.|+|+|.|++.+. |..+++
T Consensus       101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki  180 (825)
T KOG0267|consen  101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI  180 (825)
T ss_pred             hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence            99988999999999999999999999999999999999999988888887653 4578899999999988776 599999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ||+..|+++++++                    .|...+.++.|+|..-++++||.|++|++||+-
T Consensus       181 ~d~~agk~~~ef~--------------------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  181 WDLTAGKLSKEFK--------------------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ecccccccccccc--------------------cccccccccccCchhhhhccCCCCceeeeeccc
Confidence            9999998876554                    233344567799988899999999999999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.8e-21  Score=155.96  Aligned_cols=204  Identities=20%  Similarity=0.320  Sum_probs=154.9

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..+|+++|..++|+....+.||+||.|.+|++||+.......                       .+..|.+.|.++.|+
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-----------------------s~~~~~k~Vq~l~wh  295 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-----------------------SITHHGKKVQTLEWH  295 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-----------------------ehhhcCCceeEEEec
Confidence            558999999999999888999999999999999998654321                       123478899999999


Q ss_pred             eC-CCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcC
Q 048118           91 ID-NRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAG  167 (303)
Q Consensus        91 ~~-~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~  167 (303)
                      |. +..|++|+.|++|.+.|.+..... ....   -.+.|..++|+|... ..++++..||.++-+|++.. +++.+++.
T Consensus       296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~A  371 (463)
T KOG0270|consen  296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKA  371 (463)
T ss_pred             CCCceEEEeccccceEEeeeccCccccCceEE---eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEe
Confidence            85 678999999999999998631111 1111   134578899999764 47888999999999999874 88999999


Q ss_pred             CCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce--EEE--ecCCCeEEEEEEcCCC-eEEEE-EcCCcEEEEeCCC
Q 048118          168 HTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR--LYS--LDAGAVIHALCFSPNR-YWLCA-ATEQSIKIWDLES  240 (303)
Q Consensus       168 ~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--~~~--~~~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~  240 (303)
                      |.++|.++++++.- .++++++.|+.|++|++....+  ++.  +.. ....|+++.|+- .+++. +..+.+++||+.+
T Consensus       372 Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  372 HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCccceEEEeeccc
Confidence            99999999999855 4788999999999999864433  211  111 235666777763 44444 4556799999866


Q ss_pred             Cc
Q 048118          241 KS  242 (303)
Q Consensus       241 ~~  242 (303)
                      ..
T Consensus       451 ~~  452 (463)
T KOG0270|consen  451 NS  452 (463)
T ss_pred             Ch
Confidence            53

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=2.3e-20  Score=145.28  Aligned_cols=200  Identities=19%  Similarity=0.273  Sum_probs=152.0

Q ss_pred             ccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           80 HTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        80 h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      ..+.|-+++|+|. ..+++.++.|++||+|++.......-.....|..++.+++|+.++  ..+++|+.|+.+++||+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC--ceEEeeccCCceEEEEccC
Confidence            3567889999994 456669999999999998653222223344678899999999887  5789999999999999999


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCC--EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEE
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGS--LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIW  236 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw  236 (303)
                      ++. .++..|.++|..+.|-+...  .|++||-|.+|+.||.+..+++.+++....++++..- ....+++..+..|.+|
T Consensus       104 ~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~-~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  104 GQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL-YPMAVVATAERHIAVY  181 (347)
T ss_pred             CCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc-CceeEEEecCCcEEEE
Confidence            864 45778999999999977554  7899999999999999999999999988889887542 2234455668899999


Q ss_pred             eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++++-.......        +       .+   .-.+.+++..+|....+.|+-+|++-+..++
T Consensus       182 nL~n~~te~k~~~--------S-------pL---k~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  182 NLENPPTEFKRIE--------S-------PL---KWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             EcCCCcchhhhhc--------C-------cc---cceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            9987643221100        0       01   1223556777788778999999999887764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=2.3e-20  Score=144.90  Aligned_cols=229  Identities=24%  Similarity=0.379  Sum_probs=169.3

Q ss_pred             cceEEEEeCCCCcee-cccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCce-------------eeeeecCCCCccce
Q 048118           64 HFVQDVVLSSDGQFV-GHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGEC-------------KYTIQEGDAHTEWV  128 (303)
Q Consensus        64 ~~i~~~~~~~~~~~~-~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~-------------~~~~~~~~~~~~~i  128 (303)
                      ..|..+.++++..+. .|.+.|+.+...+ .|+++++|++|+.|-+||+....             ....+....|...|
T Consensus        25 rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i  104 (397)
T KOG4283|consen   25 RRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI  104 (397)
T ss_pred             hhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeee
Confidence            345667777776654 6999999999998 48899999999999999974321             11123345677789


Q ss_pred             EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC---CEEEEEeCCCeEEEEeCCCCceEE
Q 048118          129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG---SLCASGGKDGVILLWDLAEGKRLY  205 (303)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~  205 (303)
                      ..+.|-|-+. ..+.+++.|.++++||.++-+....|+- .+.|.+-+++|-.   .++|+|..|-+|++.|+.+|...+
T Consensus       105 ss~~WyP~Dt-GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  105 SSAIWYPIDT-GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eeeEEeeecC-ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            9999999653 4788999999999999988777666653 5678888888843   467888889999999999998877


Q ss_pred             Eec-CCCeEEEEEEcCCCeEE-E-EEcCCcEEEEeCCCC-ceeeeeeeccccccccccCccceeeccccceeEEEEEEcC
Q 048118          206 SLD-AGAVIHALCFSPNRYWL-C-AATEQSIKIWDLESK-SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV  281 (303)
Q Consensus       206 ~~~-~~~~v~~~~~s~~~~~l-~-~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  281 (303)
                      ++. +...|.++.|+|...++ + ++.||.|++||++.. .....+..+-.   ...+.   ......+...+..++|+.
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~---k~~p~---~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT---KRPPI---LKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC---ccCcc---ccccccccceeeeeeecc
Confidence            775 35789999999987554 3 346999999999754 22222221110   00000   001234555678999999


Q ss_pred             CCCEEEEeecCCeEEEEec
Q 048118          282 DGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       282 ~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ++.++++.+.|.++++|+-
T Consensus       257 d~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             cchhhhhccCccceEEeec
Confidence            9999999999999999975

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=2.6e-21  Score=152.09  Aligned_cols=209  Identities=23%  Similarity=0.422  Sum_probs=154.3

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ..+.+++|.++|+.|.+.|.+++++++||.|.+||+|++..+     .+...+               |.+.||.+.|.+
T Consensus       127 ~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-----~Cv~Vf---------------GG~egHrdeVLS  186 (385)
T KOG1034|consen  127 CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-----VCVAVF---------------GGVEGHRDEVLS  186 (385)
T ss_pred             hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-----eEEEEe---------------cccccccCcEEE
Confidence            346789999999999999999999999999999999999753     222222               456789999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceee--------------------------eeecCCCCccceEEEEEcCCCCCC
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKY--------------------------TIQEGDAHTEWVSCVRFSPNTLQP  140 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~  140 (303)
                      ++|+++|.++++||.|.++++|++......                          .....+.|..+|-|+.|--    .
T Consensus       187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d  262 (385)
T KOG1034|consen  187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----D  262 (385)
T ss_pred             EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh----h
Confidence            999999999999999999999997521100                          0012234555566666653    3


Q ss_pred             EEEEEeCCCcEEEEECCC-c---------e----eEEEEcCCCCCeeEEE--ECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118          141 TIVSASWDRTVKVWNLSN-C---------K----LRATLAGHTGYVNTVA--VSPDGSLCASGGKDGVILLWDLAEGKRL  204 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~-~---------~----~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~~~~  204 (303)
                      ++++-+.++.|..|.... .         +    ...++.-....|+-+.  |.|-++.|+.|...|.|.+||++..++.
T Consensus       263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence            678888899999997611 1         1    1223333345566654  5677889999999999999999876552


Q ss_pred             E--E---ecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCC
Q 048118          205 Y--S---LDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLE  239 (303)
Q Consensus       205 ~--~---~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~  239 (303)
                      .  +   -.....|++.+|+.++. +++++.++.|.-||..
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            1  1   13467899999999985 5567889999999963

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=152.21  Aligned_cols=201  Identities=20%  Similarity=0.313  Sum_probs=164.3

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .+.|+++.|+|...++++++.|+.+++|.+.+.....++.......+|.+.+|.|++. ..+++++.....+.||+.+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccccc
Confidence            4689999999999999999999999999987765544544445567899999999874 478899999999999998766


Q ss_pred             eE--EEEcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEE
Q 048118          161 LR--ATLAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIW  236 (303)
Q Consensus       161 ~~--~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iw  236 (303)
                      ..  ....++. ..+..+.++|++++|+..+..|.|.+.-..+++.+.++.....+..++|+.++. +++++.+|.|++|
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            43  2233333 356778899999999999999999999999999999999999999999999875 5567789999999


Q ss_pred             eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |++....+....-+                   ..+.-++++.|+++.+||+||..|.|.+||..
T Consensus       372 nl~~~~~~~rf~D~-------------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDD-------------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             ecCCcceEEEEeec-------------------CccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            99988665543321                   12233678889999999999999999999854

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=8.8e-19  Score=146.06  Aligned_cols=232  Identities=16%  Similarity=0.151  Sum_probs=157.4

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE-EEEeCCCcEEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKL  107 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t~~~d~~i~v  107 (303)
                      ++++|++.|+.+++||......     ...                  +..+ ..+..++|+|+++.+ ++++.++.|++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~-----~~~------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~   57 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEV-----TRT------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQV   57 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCce-----EEE------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEE
Confidence            4789999999999999864321     111                  1112 235678999999876 56778899999


Q ss_pred             EecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE
Q 048118          108 WNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG  187 (303)
Q Consensus       108 w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  187 (303)
                      ||..........  ..+. .+..+.|+|++. ..+++++.++.+++||+.+.+....+..+ ..+..++|+|+++.++++
T Consensus        58 ~d~~~~~~~~~~--~~~~-~~~~~~~~~~g~-~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~  132 (300)
T TIGR03866        58 IDLATGEVIGTL--PSGP-DPELFALHPNGK-ILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNT  132 (300)
T ss_pred             EECCCCcEEEec--cCCC-CccEEEECCCCC-EEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEE
Confidence            998653322111  1122 245688999862 23455567899999999887776666532 346789999999999988


Q ss_pred             eCCC-eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCceeeeeeeccccccccccCccce
Q 048118          188 GKDG-VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT  264 (303)
Q Consensus       188 ~~d~-~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (303)
                      +.++ .+.+||.++++.+...........++|+|++.+++++  .++.|++||+++++.+..+.......          
T Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~----------  202 (300)
T TIGR03866       133 SETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV----------  202 (300)
T ss_pred             ecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc----------
Confidence            8765 5677899887766555444456778999998766433  47899999999887766554221000          


Q ss_pred             eeccccceeEEEEEEcCCCCEEEE-eecCCeEEEEeccc
Q 048118          265 TTIKKKNIYCTSLNWSVDGSTLFS-GYTDGVIRVWGIGR  302 (303)
Q Consensus       265 ~~~~~~~~~~~~~~~sp~~~~l~~-gs~Dg~v~~w~~~~  302 (303)
                         .........++|+|+++++++ .+.++.+.+||+..
T Consensus       203 ---~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       203 ---HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             ---ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence               000112345789999997554 45677899999853

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.6e-20  Score=142.19  Aligned_cols=206  Identities=19%  Similarity=0.393  Sum_probs=150.8

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc-eee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE-CKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~-~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+|.+.|+++.|.+-|+++|||+.|.+++|||.... ..+ .....+.|...|..+.|.+......+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            368899999999999999999999999999995322 222 223345678888888886644456899999999999997


Q ss_pred             CCC---------ceeEEEEcCCCCCeeEEEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEe------c--------CC
Q 048118          156 LSN---------CKLRATLAGHTGYVNTVAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSL------D--------AG  210 (303)
Q Consensus       156 ~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~--------~~  210 (303)
                      -..         .....++......|+++.|.|  -|-.|++++.||.+|||+....-.+..+      +        ..
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521         123455666778999999999  4668999999999999998654333222      1        23


Q ss_pred             CeEEEEEEcCC---CeEEEEEcCC------cEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEc
Q 048118          211 AVIHALCFSPN---RYWLCAATEQ------SIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS  280 (303)
Q Consensus       211 ~~v~~~~~s~~---~~~l~~~~~~------~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  280 (303)
                      .+..++.|+|.   ..+++++.+.      +++||...... ...                 ...++.++...+.+++|.
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~-----------------kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL-----------------KVAELPDHTDPIRDISWA  232 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee-----------------eehhcCCCCCcceeeeec
Confidence            46778899986   4678888776      78888754322 111                 112334566778999999


Q ss_pred             CC-C---CEEEEeecCCeEEEEecc
Q 048118          281 VD-G---STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       281 p~-~---~~l~~gs~Dg~v~~w~~~  301 (303)
                      |. |   .+||+++.|| |++|.+.
T Consensus       233 Pn~Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  233 PNIGRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             cccCCceeeEEEeecCc-EEEEEEe
Confidence            95 2   4799999999 9999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=9.1e-19  Score=145.05  Aligned_cols=279  Identities=20%  Similarity=0.338  Sum_probs=191.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC-------ccccceeeeeecCCCcc--------eEEEEeCCCC
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-------EKTYGVARRRLTGHSHF--------VQDVVLSSDG   75 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~--------i~~~~~~~~~   75 (303)
                      .++|.+.|++++.-.+  ..|++|+.|..|..||-.-.       ....+..+....++...        |..-.+....
T Consensus       283 ~~aH~ggv~~L~~lr~--GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  283 VHAHDGGVFSLCMLRD--GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             eeecCCceEEEEEecC--ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence            4489999999998754  47899999999999983210       01123333333333331        1111122222


Q ss_pred             c--eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           76 Q--FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        76 ~--~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      +  ..+|....+.++.+|+..+++|++.|+.+++|+- ....+....    ..+..|+.|+|.+   .++.|...|...+
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~-~k~~wt~~~----~d~~~~~~fhpsg---~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND-HKLEWTKII----EDPAECADFHPSG---VVAVGTATGRWFV  432 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEccC-CceeEEEEe----cCceeEeeccCcc---eEEEeeccceEEE
Confidence            1  3489999999999999999999999999999993 333333322    3457899999985   6899999999999


Q ss_pred             EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCCeEEEE-Ec
Q 048118          154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNRYWLCA-AT  229 (303)
Q Consensus       154 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~-~~  229 (303)
                      .|.++...+..-.. +++++.++|+|+|.+||.|+.|+.|++|-+......+..   -..+++..+.||+|++++.+ +.
T Consensus       433 ~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  433 LDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             EecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence            99988766655454 789999999999999999999999999998654332221   12489999999999987765 45


Q ss_pred             CCcEEEEeCCCCcee---eeeeecccc------------------c----cc------------------cccCccceee
Q 048118          230 EQSIKIWDLESKSIV---EDLKVDLKT------------------E----AE------------------KSEATTATTT  266 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~---~~~~~~~~~------------------~----~~------------------~~~~~~~~~~  266 (303)
                      |-.|-.|.....+.+   ++++-....                  .    ..                  -.....+...
T Consensus       512 d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he  591 (626)
T KOG2106|consen  512 DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE  591 (626)
T ss_pred             ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee
Confidence            778888954333222   111100000                  0    00                  0011112334


Q ss_pred             ccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          267 IKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       267 ~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ..+|...+++++|..+..+|.+.+.|..|..|++
T Consensus       592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            4567777899999987777776669999999986

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=2.9e-20  Score=159.72  Aligned_cols=242  Identities=21%  Similarity=0.326  Sum_probs=188.6

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC--
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID--   92 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~--   92 (303)
                      +--+-+++++|++ .+||+|...|+|++|++...+...                       .+.+|..+|.|+.|+..  
T Consensus       459 r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~-----------------------~~eAHesEilcLeyS~p~~  514 (1080)
T KOG1408|consen  459 RFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTC-----------------------FMEAHESEILCLEYSFPVL  514 (1080)
T ss_pred             ccceEEEEECCCc-ceecccCccCceEEEEehhhhhhh-----------------------heecccceeEEEeecCchh
Confidence            3457789999875 689999999999999997543221                       24579999999999853  


Q ss_pred             -CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc-----
Q 048118           93 -NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-----  166 (303)
Q Consensus        93 -~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-----  166 (303)
                       .++||+++.|.-|.|+|...+. ..++..+.|...|++++|-.++.+..+++++.|..|.+--.++......+.     
T Consensus       515 ~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  515 TNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             hhHhhhhccCCceEEEEeccccc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence             4689999999999999985432 234555788999999999998877889999999988753322111111111     


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCC
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFSPNRYWLCA-ATEQSIKIWDLESK  241 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~  241 (303)
                      .....+..++..|..+++++++.|+.|+|||+.+++..+.|..    ....-.+...|.+.++++ ++|..+.++|.-++
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            1235688999999999999999999999999999999888853    233445778999977765 57999999999888


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+...                    .+|...++.+.|.||=+.|++.+.||.|.+|.+.
T Consensus       674 EcvA~m--------------------~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  674 ECVAQM--------------------TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hhhhhh--------------------cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            765432                    4566678899999999999999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=2.4e-20  Score=160.27  Aligned_cols=201  Identities=19%  Similarity=0.268  Sum_probs=151.4

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC-CCCEEEEEeCCCcEEEEECCC-
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT-LQPTIVSASWDRTVKVWNLSN-  158 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~dg~i~iwd~~~-  158 (303)
                      .-.+.+++.+|+|++||+|..-|.++||++......  -..++|...|.|+.++... ....+++++.|..|++||... 
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhh--hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            346899999999999999999999999998653222  2235788999999998533 234688999999999999854 


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCC--CEEEEEeCCCeEEEEeCCCCc--eEEE----ecCCCeEEEEEEcCCC-eEEEEEc
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDG--SLCASGGKDGVILLWDLAEGK--RLYS----LDAGAVIHALCFSPNR-YWLCAAT  229 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~--~~~~----~~~~~~v~~~~~s~~~-~~l~~~~  229 (303)
                      ..+++++.+|...|++++|-.+|  ..+++++.|..|.+--.+...  .+..    ......++.++..|.. ..+.++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            46778899999999999998776  578899999876543222111  1111    1224578999999985 5667788


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      |.+|+|||+++++..+.++-....                 .....-+...|.|.||++.+.|.++.++|.
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~-----------------eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDH-----------------EGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             ccceEEEeccccceeeeecccccC-----------------CCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            999999999999988876643221                 111123556799999999999999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.1e-19  Score=151.07  Aligned_cols=237  Identities=16%  Similarity=0.282  Sum_probs=180.5

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecc-cCCEEEEEEeeCCC
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH-TKDVLSVAFSIDNR   94 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h-~~~i~~i~~~~~~~   94 (303)
                      ..|.+++++-. .+.||.+-.||.|.||++....-    +..                  .+.++ ...|-+++|++ +.
T Consensus        26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~----~~~------------------vi~g~~drsIE~L~W~e-~~   81 (691)
T KOG2048|consen   26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWF----LEP------------------VIHGPEDRSIESLAWAE-GG   81 (691)
T ss_pred             cceEEEEEecc-CCceeeeccCCcEEEEccCCCce----eeE------------------EEecCCCCceeeEEEcc-CC
Confidence            46889999865 46799999999999999864321    000                  11122 34688999994 55


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE--EEcCCCCCe
Q 048118           95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYV  172 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~i  172 (303)
                      +|.+.+.+|.|.-||+.+..  .....+.-...|.+++.+|..  ..++.||.||.+..++...++...  .+.-.++++
T Consensus        82 RLFS~g~sg~i~EwDl~~lk--~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen   82 RLFSSGLSGSITEWDLHTLK--QKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             eEEeecCCceEEEEecccCc--eeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence            67788899999999985432  222234455679999999976  468889999988888877766543  344456899


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118          173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---------AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~  243 (303)
                      .+++|+|++..++.|+.||.|++||+.+++.++...         ....|.++.|-.++.++++-+.|.|.+||...+.+
T Consensus       158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch
Confidence            999999999999999999999999999998776221         13468889888889988888999999999998877


Q ss_pred             eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +...+.                    +...+.+++-.+++.++++++-|+.+..|..
T Consensus       238 iqS~~~--------------------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  238 IQSHSC--------------------HDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             hhhhhh--------------------hhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            654432                    2334567888899999999999999988764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=3e-19  Score=139.42  Aligned_cols=225  Identities=21%  Similarity=0.311  Sum_probs=166.2

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      |..++.+.+|.+  ...+++|+.||.|+.+|+..+...                        ++-.|..+|.+|.+++..
T Consensus        53 ~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~------------------------~igth~~~i~ci~~~~~~  106 (323)
T KOG1036|consen   53 HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED------------------------QIGTHDEGIRCIEYSYEV  106 (323)
T ss_pred             cCCceeeeeccC--CceEEEeccCceEEEEEecCCcce------------------------eeccCCCceEEEEeeccC
Confidence            778899999976  357999999999999999754321                        234588999999999988


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc--CCCCC
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA--GHTGY  171 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~  171 (303)
                      ..+++|+.|+.|++||.........  .+ ....|.|+...-    ..|+.|+.+..+.+||+++.....+..  .-+-.
T Consensus       107 ~~vIsgsWD~~ik~wD~R~~~~~~~--~d-~~kkVy~~~v~g----~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyq  179 (323)
T KOG1036|consen  107 GCVISGSWDKTIKFWDPRNKVVVGT--FD-QGKKVYCMDVSG----NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQ  179 (323)
T ss_pred             CeEEEcccCccEEEEeccccccccc--cc-cCceEEEEeccC----CEEEEeecCceEEEEEcccccchhhhccccceeE
Confidence            8999999999999999864221111  11 223688877654    368999999999999998765332211  12235


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEeCCCCc----eEEEec----------CCCeEEEEEEcCC-CeEEEEEcCCcEEEE
Q 048118          172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGK----RLYSLD----------AGAVIHALCFSPN-RYWLCAATEQSIKIW  236 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~----------~~~~v~~~~~s~~-~~~l~~~~~~~i~iw  236 (303)
                      +.++++.|++.=+++++-||+|.+=.+...+    .-+.+.          ...+|++++|+|- +.++++++||.|.+|
T Consensus       180 tR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W  259 (323)
T KOG1036|consen  180 TRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW  259 (323)
T ss_pred             EEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence            7899999988878899999999986665542    222332          1247999999997 566677889999999


Q ss_pred             eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      |+.+++.+.++.-                    ...-+.+++|+.+|..||+|++
T Consensus       260 d~~~rKrl~q~~~--------------------~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  260 DLFNRKRLKQLAK--------------------YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cCcchhhhhhccC--------------------CCCceEEEEeccCCCeEEEEec
Confidence            9998877665431                    1123577999999999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.4e-21  Score=172.30  Aligned_cols=246  Identities=19%  Similarity=0.312  Sum_probs=181.6

Q ss_pred             ceeeeecCCCCCc---EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           17 MVTAIATPIDNSD---MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        17 ~v~~v~~~~~~~~---~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      ..+.++|.+.+.+   ++|.|..||.|-+|+..+..+..  ...               .-.++..|++.|..+.|++..
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--~~~---------------~la~~~~h~G~V~gLDfN~~q  128 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--SEE---------------VLATKSKHTGPVLGLDFNPFQ  128 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCc--chH---------------HHhhhcccCCceeeeeccccC
Confidence            4567888776554   69999999999999976521000  000               001345799999999999976


Q ss_pred             C-EEEEEeCCCcEEEEecCCceeeeeec-CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC-
Q 048118           94 R-QIVSASRDRTIKLWNTLGECKYTIQE-GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG-  170 (303)
Q Consensus        94 ~-~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~-  170 (303)
                      . +||+|+.||.|.|||+..... .... ...-.+.|.+++|+... +..|++++.+|.+.|||++..+.+-.+..+.+ 
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~t-P~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~  206 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPET-PFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR  206 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCC-CCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCc
Confidence            5 999999999999999865221 2221 12235679999999764 44789999999999999998877666655543 


Q ss_pred             -CeeEEEECCCC-CEEEEEeCC---CeEEEEeCCCC-ceEEEe-cCCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCC
Q 048118          171 -YVNTVAVSPDG-SLCASGGKD---GVILLWDLAEG-KRLYSL-DAGAVIHALCFSPNR--YWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       171 -~i~~~~~~~~~-~~l~~~~~d---~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~  241 (303)
                       .+..+.|+|+. ..+++++.|   -.|.+||+|.- .+++.+ .+...|.++.|++.+  .++.++.|++|.+||.+++
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence             47889999976 456666654   38999999853 344444 345678899999875  4556677999999999999


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                      +++.++..                    ...++..+.|.|... .++.++-||.|-+|.+.
T Consensus       287 Evl~~~p~--------------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  287 EVLGELPA--------------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             eEeeecCC--------------------CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            98876542                    245678899999887 88899999999999873

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.85  E-value=5e-19  Score=160.06  Aligned_cols=280  Identities=20%  Similarity=0.264  Sum_probs=182.2

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      +| .++.+++.|..+|..++.+++...+|+|||.||+||+|+..+.+...+..+          +.+.+++      -..
T Consensus      1037 ~G-~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r----------S~ltys~------~~s 1099 (1431)
T KOG1240|consen 1037 RG-ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR----------SELTYSP------EGS 1099 (1431)
T ss_pred             cc-eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee----------eeEEEec------cCC
Confidence            45 566789999999999999988768999999999999999876543322221          2333433      345


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCC--ceeee-----eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLG--ECKYT-----IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ++.++...+.+.++|.++.||.|++.++..  ..+..     +...+.....+..-++........++.+...+.|..||
T Consensus      1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred             ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence            778888999999999999999999998743  11111     11111111223333443332223688888899999999


Q ss_pred             CCCceeEEEE--cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CCeEEEEEEcCCC---eEEEE-
Q 048118          156 LSNCKLRATL--AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSPNR---YWLCA-  227 (303)
Q Consensus       156 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~---~~l~~-  227 (303)
                      .+.......+  ....+.|++++.+|.+++++.|+..|.+.+||++-+.++..+..  ..+++.++.+|-.   .+.++ 
T Consensus      1180 ~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred             chhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence            9765433222  23457899999999999999999999999999999998887754  4566666666542   33332 


Q ss_pred             -E-cCCcEEEEeCCCCceeeeeeeccccccccccCcccee-eccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          228 -A-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATT-TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       228 -~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                       . ..+.|.+|++.++.--..+...  +.........+.. ..+..........+...++.+.+|+.|+.||.||..
T Consensus      1260 ~~~~~nevs~wn~~~g~~~~vl~~s--~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWAS--DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             cccCCCceeeeecccCcceEEEEcC--CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence             2 4678999999988443333222  1100000000000 000111111223344456799999999999999975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.1e-20  Score=144.75  Aligned_cols=246  Identities=18%  Similarity=0.327  Sum_probs=166.7

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee--CCCEEEEEeCCCcEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI--DNRQIVSASRDRTIK  106 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~l~t~~~d~~i~  106 (303)
                      ..+|++-..|+|++||......     +                  +.+.+|...++.+.|..  .+..+.+|+.||.||
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~-----l------------------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr   97 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL-----L------------------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVR   97 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh-----h------------------heecCCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence            3578888889999999765321     1                  23556677777888876  467899999999999


Q ss_pred             EEecCCceeeeeecCCCCc-cceEEEEEcCCCCCCEEEEEe----CCCcEEEEECCCcee--EEEEcCCCCCeeEEEECC
Q 048118          107 LWNTLGECKYTIQEGDAHT-EWVSCVRFSPNTLQPTIVSAS----WDRTVKVWNLSNCKL--RATLAGHTGYVNTVAVSP  179 (303)
Q Consensus       107 vw~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~----~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~  179 (303)
                      +||++............+. .+..|++.+...  ..+++|.    .+..+.+||.+..+.  ......|...|++++|+|
T Consensus        98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen   98 LWDIRSQAESARISWTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             EEEeecchhhhheeccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence            9998654332222222222 445666665432  3555553    356799999987543  334567999999999999


Q ss_pred             C-CCEEEEEeCCCeEEEEeCCCCc----eEEEecCCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCCceeeeeeecc-
Q 048118          180 D-GSLCASGGKDGVILLWDLAEGK----RLYSLDAGAVIHALCFSPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDL-  251 (303)
Q Consensus       180 ~-~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~-  251 (303)
                      . -++|++||.||-|.++|++...    .+..+...+.|..+.|...+  ++.+.+..+...+|+++.++....+..+. 
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~  255 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV  255 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence            5 4689999999999999997543    34556778899999999887  78888899999999998765432221110 


Q ss_pred             -----------------c-ccc----------------------ccccCccceeeccc-cceeEEEEEEcCCCCEEEEee
Q 048118          252 -----------------K-TEA----------------------EKSEATTATTTIKK-KNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       252 -----------------~-~~~----------------------~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~gs  290 (303)
                                       . +..                      ......+....+++ +...|.++.|...+..+.||+
T Consensus       256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG  335 (376)
T KOG1188|consen  256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG  335 (376)
T ss_pred             hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence                             0 000                      00011111122222 333456677777788999999


Q ss_pred             cCCeEEEEe
Q 048118          291 TDGVIRVWG  299 (303)
Q Consensus       291 ~Dg~v~~w~  299 (303)
                      .||.+.+|.
T Consensus       336 EDG~l~~Wk  344 (376)
T KOG1188|consen  336 EDGLLQAWK  344 (376)
T ss_pred             CCceEEEEe
Confidence            999999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=6.6e-19  Score=153.65  Aligned_cols=193  Identities=24%  Similarity=0.349  Sum_probs=158.9

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      ..+.+++.++.|...+.|...|.|-+|+..+.... ..-....|..+|..++...-  ...+++++.+|.+.+||+++..
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCcc
Confidence            46888999999999999999999999998654322 11122468888999988653  4579999999999999998877


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeC
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDL  238 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~  238 (303)
                      +...+.- ...+..+..+.....++.+..|-.|+++|..+.+.++.+. ++..+++++|||||.|++++ .|++|++||+
T Consensus       527 l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  527 LKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            7666654 3467788888888889999999999999999988888775 67899999999999998765 5899999999


Q ss_pred             CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-CeEEEE
Q 048118          239 ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-GVIRVW  298 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g~v~~w  298 (303)
                      -++.++.-+.++                     ..++++.|||.|.+|||...| .-|.+|
T Consensus       606 pt~~lID~~~vd---------------------~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  606 PTGTLIDGLLVD---------------------SPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             cCcceeeeEecC---------------------CcceeeEECCCCCEEEEEEecCceEEEE
Confidence            999988766542                     245789999999999999999 778888

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.7e-19  Score=146.68  Aligned_cols=209  Identities=21%  Similarity=0.314  Sum_probs=161.9

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      .+.|.++.-+|. +.+++.|..-+.|.+|.+..+....                       .+.+|-.+|+++.|+.||.
T Consensus        81 Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~-----------------------v~~aHYQ~ITcL~fs~dgs  136 (476)
T KOG0646|consen   81 PGPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLN-----------------------VLSAHYQSITCLKFSDDGS  136 (476)
T ss_pred             ccceeeeecCCC-ceEEEeecccCcEEEEEeccccHHH-----------------------HHHhhccceeEEEEeCCCc
Confidence            466889987765 4566666699999999997654221                       2346888999999999999


Q ss_pred             EEEEEeCCCcEEEEecCC-------ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           95 QIVSASRDRTIKLWNTLG-------ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      +|+|||.||.|.+|.+..       ...........|.-.|..+...+.+...++++++.|.++++||+..+.+..++.-
T Consensus       137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f  216 (476)
T KOG0646|consen  137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF  216 (476)
T ss_pred             EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec
Confidence            999999999999997521       1122333445688889999988877778999999999999999999988776653


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc----------------eEEEec-C--CCeEEEEEEcCCCeEEEEE
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK----------------RLYSLD-A--GAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----------------~~~~~~-~--~~~v~~~~~s~~~~~l~~~  228 (303)
                       ...+.+++++|.++.+..|+++|.|.+.++..-.                .+..+. +  +..|.+++++-||.+|+++
T Consensus       217 -p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG  295 (476)
T KOG0646|consen  217 -PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG  295 (476)
T ss_pred             -CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence             4678999999999999999999999988874311                111221 1  2589999999999877665


Q ss_pred             -cCCcEEEEeCCCCceeeeee
Q 048118          229 -TEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       229 -~~~~i~iwd~~~~~~~~~~~  248 (303)
                       .||++.+||+.+.+.++.+.
T Consensus       296 d~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  296 DEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCCCCEEEEecchHHHHHHHh
Confidence             59999999998877665543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.85  E-value=3.3e-19  Score=152.60  Aligned_cols=210  Identities=24%  Similarity=0.358  Sum_probs=148.8

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCC-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDR-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      ||--+|++++.+|++.++||++...     .|++|+....  ...+....|+-.|+-++|+|++  .++++.+.|+.+.+
T Consensus       523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDG--RYLLSVSRDRTVSL  598 (764)
T ss_pred             cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheecccceEEEEEEECCCC--cEEEEeecCceEEe
Confidence            8889999999999999999998754     5889987442  2233345788899999999997  58999999999999


Q ss_pred             EECCCce-eE---EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC--ceEEE---ecCCCeEEEEEEcCC---
Q 048118          154 WNLSNCK-LR---ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG--KRLYS---LDAGAVIHALCFSPN---  221 (303)
Q Consensus       154 wd~~~~~-~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~---~~~~~~v~~~~~s~~---  221 (303)
                      |...... ..   ...+.|+..|.+..|+|++.+|+|+|+|.+|++|.....  +.+..   ++....|+.+++.|-   
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            9864322 11   225679999999999999999999999999999998776  33322   344678888888763   


Q ss_pred             --CeEEEEE-cCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEcCC--------C--CEEE
Q 048118          222 --RYWLCAA-TEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD--------G--STLF  287 (303)
Q Consensus       222 --~~~l~~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--------~--~~l~  287 (303)
                        +.+++++ ..|.|.+|....-. ........+.         +.......+...++.+.|+|.        .  ..|+
T Consensus       679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la  749 (764)
T KOG1063|consen  679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLD---------TRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA  749 (764)
T ss_pred             cccceEEEEecccEEEEEecccccccccceeeeec---------cccccccChHHhhheeEeccccccccccccceeEEe
Confidence              2355555 57999999964211 1111100000         000011122334567888875        2  2479


Q ss_pred             EeecCCeEEEEecc
Q 048118          288 SGYTDGVIRVWGIG  301 (303)
Q Consensus       288 ~gs~Dg~v~~w~~~  301 (303)
                      +|++|..+|++++.
T Consensus       750 ~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  750 VGGDDESVRIFNVD  763 (764)
T ss_pred             eecccceeEEeecc
Confidence            99999999999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=5.1e-19  Score=137.11  Aligned_cols=278  Identities=17%  Similarity=0.265  Sum_probs=182.9

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCC-------cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDK-------SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      .+..|.+.|..++-+|.+.++|+|+.+|.       .+.||.+.+.-....  ..+    ...+..+       -..+.+
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~t----lE~v~~L-------dteavg  124 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SST----LECVASL-------DTEAVG  124 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cch----hhHhhcC-------CHHHhC
Confidence            46778899999999999899999998742       477998864321100  000    0000000       024567


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeee----ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      .|.|+.|.|++..+++-. |..|.+|+.........    .....+.....+-+|+|.... ..+....|++++.||+++
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~tt~d~tl~~~D~RT  202 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVATTSDSTLQFWDLRT  202 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEEEeCCCcEEEEEccc
Confidence            899999999998888654 88999999754333111    111123445678889995432 345567899999999998


Q ss_pred             ceeEEEE-cCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCC--CeEEEEEcCCc
Q 048118          159 CKLRATL-AGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPN--RYWLCAATEQS  232 (303)
Q Consensus       159 ~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~~~  232 (303)
                      .+....+ ..|...+..+.|+|+.+ +|++|+.||.|++||.+.- .++..+. +...|.++.|+|.  ..+|.+++|..
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            8766555 35778899999999876 5789999999999999854 4566554 4578999999995  45667788999


Q ss_pred             EEEEeCCCCceeeeeeecccccc-------cc--ccCccceeeccccceeEEEEEEcCCCCE-EEEeecCCeEEEEeccc
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEA-------EK--SEATTATTTIKKKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~gs~Dg~v~~w~~~~  302 (303)
                      +.+|....-.-...+........       +.  ........++..|.--+.+++||.-.++ +|+=|.||++.+=.+.+
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            99998643221111111100000       00  0001112234445556788999987775 66779999998866543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=8.5e-19  Score=132.82  Aligned_cols=211  Identities=21%  Similarity=0.325  Sum_probs=148.5

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..|+.-+++|. ..+|+.|+.+|+|.++.+........    ..++....+         ...+|.++|+.++|+  ..+
T Consensus        11 ~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk~~iv---------~eqahdgpiy~~~f~--d~~   74 (325)
T KOG0649|consen   11 NTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGKLKIV---------PEQAHDGPIYYLAFH--DDF   74 (325)
T ss_pred             HHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhcccc----CCCCCccee---------eccccCCCeeeeeee--hhh
Confidence            35777788886 47999999999999999864221110    001111111         236899999999998  335


Q ss_pred             EEEEeCCCcEEEEecCCcee-------e----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           96 IVSASRDRTIKLWNTLGECK-------Y----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~-------~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      |++|+ ||.|+=|.......       +    ..+.....-..|+++...|..  +-++.++.|+.++.||+++++..++
T Consensus        75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEE
Confidence            66655 59999886432111       0    111111122347788888764  3466667999999999999999999


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----------CCeEEEEEEcCCCeEEEEEcCCcE
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----------GAVIHALCFSPNRYWLCAATEQSI  233 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~~~~i  233 (303)
                      +++|++.+.++.--.....+++|++||++|+||.++++.+.++..           +..|.+++-  +..|++++....+
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~l  229 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKL  229 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCce
Confidence            999999999998855555778999999999999999998877632           234666654  4568999999999


Q ss_pred             EEEeCCCCceeeee
Q 048118          234 KIWDLESKSIVEDL  247 (303)
Q Consensus       234 ~iwd~~~~~~~~~~  247 (303)
                      .+|+++..+....+
T Consensus       230 slwhLrsse~t~vf  243 (325)
T KOG0649|consen  230 SLWHLRSSESTCVF  243 (325)
T ss_pred             eEEeccCCCceEEE
Confidence            99999876654433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=3.2e-19  Score=148.81  Aligned_cols=245  Identities=20%  Similarity=0.327  Sum_probs=164.3

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceee------------eeecCCCcceEEEEeCCCCce---
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVAR------------RRLTGHSHFVQDVVLSSDGQF---   77 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~---   77 (303)
                      .|...|.++.|... .+.+.+++.+..+.-|+....+.......            +........=..+.-+.+|++   
T Consensus        12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            46677889998854 45455454444555555443321110000            000001111122334455554   


Q ss_pred             ----------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC
Q 048118           78 ----------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW  147 (303)
Q Consensus        78 ----------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  147 (303)
                                .+|.+.|.+-.|+|+|.-|+|.+.||.|++|...+..+..+.+   ...+|.|++|.|+.. ..+.+  .
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q---~~~~v~c~~W~p~S~-~vl~c--~  164 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ---NEESIRCARWAPNSN-SIVFC--Q  164 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh---cCceeEEEEECCCCC-ceEEe--c
Confidence                      3799999999999999999999999999999876654433322   245699999999873 34443  3


Q ss_pred             CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEE
Q 048118          148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       148 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  226 (303)
                      .+-+.|=.+..+...-..+.|.+.|.++.|+|....+++|++|-+.++||.. |+.+++- ....+|++++|+|+. .++
T Consensus       165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~-~~~  242 (737)
T KOG1524|consen  165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK-DYL  242 (737)
T ss_pred             CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-cee
Confidence            4556666666665566788999999999999999999999999999999975 4455443 456799999999994 444


Q ss_pred             EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      ..+-+..++=..+.                               ..+..++|||||..++.|...|-|.+
T Consensus       243 v~S~nt~R~~~p~~-------------------------------GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  243 LWSYNTARFSSPRV-------------------------------GSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeeeecCCCc-------------------------------cceEEEEEcCCCceeeccccCceEEE
Confidence            44444444211111                               12467999999999999999998754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=153.81  Aligned_cols=197  Identities=21%  Similarity=0.338  Sum_probs=156.2

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      |.+.|.+++..   ..+|++|+.+++|.+|.+..++..                       +-+...+-++..++|+.+|
T Consensus        55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~-----------------------~iL~Rftlp~r~~~v~g~g  108 (933)
T KOG1274|consen   55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED-----------------------TILARFTLPIRDLAVSGSG  108 (933)
T ss_pred             cCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc-----------------------ceeeeeeccceEEEEecCC
Confidence            66778888764   358999999999999998765421                       1122334578899999999


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC------
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG------  167 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~------  167 (303)
                      +++|.||.|-.|++-+......  .....+|.++|.++.|+|++  ..+++.+.||.|++||+.++.+..++.+      
T Consensus       109 ~~iaagsdD~~vK~~~~~D~s~--~~~lrgh~apVl~l~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~  184 (933)
T KOG1274|consen  109 KMIAAGSDDTAVKLLNLDDSSQ--EKVLRGHDAPVLQLSYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE  184 (933)
T ss_pred             cEEEeecCceeEEEEeccccch--heeecccCCceeeeeEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCcccc
Confidence            9999999999999988654322  22335789999999999986  5899999999999999998876554432      


Q ss_pred             --CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118          168 --HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAA-TEQSIKIWDLES  240 (303)
Q Consensus       168 --~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  240 (303)
                        ....+..++|+|++..|+..+.|+.|++++..+.+..+.+..   .+.+..++|+|.|.+||++ .+|.|-+||+++
T Consensus       185 ~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  185 FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence              134577899999998999999999999999988777666532   3458899999999888776 499999999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.2e-19  Score=146.39  Aligned_cols=248  Identities=22%  Similarity=0.350  Sum_probs=166.3

Q ss_pred             CCcEEEEecCCCcEEEEEcccCcccc-ceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-CCEEEEEeCCCc
Q 048118           27 NSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-NRQIVSASRDRT  104 (303)
Q Consensus        27 ~~~~~~t~s~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~  104 (303)
                      .++|+|.|..|..|.|||+.-..... .+.+.......   ....--....-.+|++.|..++|+.. ...||+||.|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~---~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK---KKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhh---hhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence            34799999999999999985321111 00110000000   00000001112479999999999875 468999999999


Q ss_pred             EEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEEcCCCCCeeEEEECCCCC
Q 048118          105 IKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGS  182 (303)
Q Consensus       105 i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~  182 (303)
                      |++||+.. .+...+   ..|...|.++.|+|.. ...+++|+.|++|.+.|.+.-. .-..++ -.+.|-.++|.|...
T Consensus       268 V~lWD~~~g~p~~s~---~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSI---THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE  342 (463)
T ss_pred             EEEEEcCCCCcceeh---hhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc
Confidence            99999853 333322   3577889999999975 4589999999999999998421 111121 246788999999664


Q ss_pred             -EEEEEeCCCeEEEEeCCCC-ceEEEec-CCCeEEEEEEcCC--CeEEEEEcCCcEEEEeCCCCce--eeeeeecccccc
Q 048118          183 -LCASGGKDGVILLWDLAEG-KRLYSLD-AGAVIHALCFSPN--RYWLCAATEQSIKIWDLESKSI--VEDLKVDLKTEA  255 (303)
Q Consensus       183 -~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~  255 (303)
                       .++++..||+|+-+|+|.. ++++++. +...|.++++++.  +.+.++++++.+++|++.....  +..-.+      
T Consensus       343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~------  416 (463)
T KOG0270|consen  343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF------  416 (463)
T ss_pred             eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc------
Confidence             6778889999999999965 7888875 4678999999987  4455667899999999854321  111100      


Q ss_pred             ccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEeccc
Q 048118          256 EKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~~  302 (303)
                                  .-...  .+.++.|+-. +|+.|+..+.+++||+-.
T Consensus       417 ------------~~~rl--~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  417 ------------KLGRL--HCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ------------cccce--eecccCCCcceEEEecCccceEEEeeccc
Confidence                        00111  2345556644 788999999999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=9.3e-20  Score=150.86  Aligned_cols=233  Identities=15%  Similarity=0.282  Sum_probs=177.7

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA   99 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~   99 (303)
                      +....|+ ++.|++|+.-.++.|||++...+.....                     +..-.-.-+.++.+||.+...+|
T Consensus       470 SckL~pd-grtLivGGeastlsiWDLAapTprikae---------------------ltssapaCyALa~spDakvcFsc  527 (705)
T KOG0639|consen  470 SCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKAE---------------------LTSSAPACYALAISPDAKVCFSC  527 (705)
T ss_pred             eeEecCC-CceEEeccccceeeeeeccCCCcchhhh---------------------cCCcchhhhhhhcCCccceeeee
Confidence            3345555 4689999999999999997544322111                     11111233567889999999999


Q ss_pred             eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC
Q 048118          100 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP  179 (303)
Q Consensus       100 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~  179 (303)
                      ..||.|.|||+....  .+....+|++...||..++++  ..+-+|+-|.+||.||++.+....... ....|.++.+.|
T Consensus       528 csdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~dG--tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP  602 (705)
T KOG0639|consen  528 CSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISKDG--TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCP  602 (705)
T ss_pred             ccCCcEEEEEcccce--eeecccCCCCCceeEEecCCC--ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCC
Confidence            999999999997643  344556899999999999987  368899999999999998875433221 246799999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccc
Q 048118          180 DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKS  258 (303)
Q Consensus       180 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (303)
                      ++.++++|-+.+.+-+-.....+.-..-.+.+.|.++.|.+-|+|+++ +.|+-+..|..-.+..+...+.         
T Consensus       603 ~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------  673 (705)
T KOG0639|consen  603 TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------  673 (705)
T ss_pred             CccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------
Confidence            999999999999998887766555444456789999999999988765 5689999999877765544331         


Q ss_pred             cCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          259 EATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                  ...+.+++.|-|.++++|||.|....||.+
T Consensus       674 ------------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 ------------SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ------------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                        223567888899999999999999999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.4e-20  Score=169.06  Aligned_cols=216  Identities=19%  Similarity=0.329  Sum_probs=165.4

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD   83 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~   83 (303)
                      .+.++.+...|+++|..+.|++..++.+|+|++||.|.|||+++.+.-+...                     .....+.
T Consensus       105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------------~~~~~~e  163 (1049)
T KOG0307|consen  105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------------SQAPPSE  163 (1049)
T ss_pred             chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------------CCCCccc
Confidence            3567888999999999999999988899999999999999998643221100                     0123468


Q ss_pred             EEEEEEeeC-CCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECCC
Q 048118           84 VLSVAFSID-NRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLSN  158 (303)
Q Consensus        84 i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~~  158 (303)
                      |.+++|+.. .+.|++++.++.+.|||++... ...+... .....+..+.|||+... .+++++.|   -.|.+||++.
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccc
Confidence            999999975 4578999999999999997642 1111111 11133678999998754 45555444   3599999976


Q ss_pred             c-eeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCe--EEEEEcCCcE
Q 048118          159 C-KLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRY--WLCAATEQSI  233 (303)
Q Consensus       159 ~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~--~l~~~~~~~i  233 (303)
                      - ...+.+.+|...|.++.|.+.+ ++|++++.|++|.+||.++++.+..+.. +..+..+.|.|...  +.+++-+|.|
T Consensus       242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence            3 4567778999999999999966 7889999999999999999999998865 57899999999854  3455669999


Q ss_pred             EEEeCCCCc
Q 048118          234 KIWDLESKS  242 (303)
Q Consensus       234 ~iwd~~~~~  242 (303)
                      .||.+.+..
T Consensus       322 ~I~sl~~~~  330 (1049)
T KOG0307|consen  322 SIYSLQGTD  330 (1049)
T ss_pred             eeeeeecCC
Confidence            999987654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.8e-19  Score=140.34  Aligned_cols=203  Identities=20%  Similarity=0.421  Sum_probs=156.0

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEec------CC---------cee-----------------------ee
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT------LG---------ECK-----------------------YT  117 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~------~~---------~~~-----------------------~~  117 (303)
                      +|.||.+.|++|.|++.+.+++|++.|++..||..      ..         ++.                       ..
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            58899999999999999999999999999999962      00         000                       00


Q ss_pred             eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118          118 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD  197 (303)
Q Consensus       118 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  197 (303)
                      +-...+|...|.+..|-..+  ..++++++|.+-.+||+++++++..+.+|....+-++-+|..+++++++.|-+.++||
T Consensus       265 l~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD  342 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD  342 (481)
T ss_pred             eeeeeccccceEehhhhcCc--ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEecc
Confidence            01112355556666666554  3589999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCce-EEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeE
Q 048118          198 LAEGKR-LYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       198 ~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                      ++.... +..|+ +...|.+..|..+..++.++.|..|++||+++-+ .+..++.+                     ..+
T Consensus       343 FReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd---------------------S~~  401 (481)
T KOG0300|consen  343 FREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD---------------------SPA  401 (481)
T ss_pred             chhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecC---------------------Ccc
Confidence            985432 33343 3578999999999998888899999999998642 12222211                     123


Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          275 TSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       275 ~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.++.+-.++.++.--.+.-||+||++
T Consensus       402 NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  402 NRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             ceeEeecCCceEEeccCCceEEEEecC
Confidence            456667667788888888899999984

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=6.3e-19  Score=141.89  Aligned_cols=205  Identities=24%  Similarity=0.316  Sum_probs=150.3

Q ss_pred             eecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           77 FVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      +.||+++|..++|+|. ...+|+|+.|.+|.||++.....     ..+....+|...|.-+.|||.. .+.+++++.|..
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-~NVLlsag~Dn~  155 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-PNVLLSAGSDNT  155 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-hhhHhhccCCce
Confidence            4589999999999995 56899999999999999743211     1233345788889999999975 568999999999


Q ss_pred             EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEEE
Q 048118          151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~  228 (303)
                      |.+|++.+++...++. |.+.|.++.|+.+|.+|++++.|..|+|||.++++.+..-.  .+..-..+.|-.++.+++++
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999998877777 99999999999999999999999999999999998876642  12333344566677766665


Q ss_pred             ----cCCcEEEEeCCCCcee-eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE-EEEeecCCeEEEEeccc
Q 048118          229 ----TEQSIKIWDLESKSIV-EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       229 ----~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~gs~Dg~v~~w~~~~  302 (303)
                          ++.++.+||..+-+.- ....++                  .... +.-==|.||-.. .++|-.|+.||.|.+.+
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elD------------------tSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELD------------------TSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             cccccccceeccCcccccCcceeEEec------------------cCCc-eEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence                4678999997543211 000000                  0000 000114566664 45777899999998753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=1.1e-18  Score=135.28  Aligned_cols=203  Identities=20%  Similarity=0.332  Sum_probs=157.8

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID   92 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~   92 (303)
                      .+..++++..|+.-.++++.|+|-|-+..|||+..+..             +.|       ..++.+|..+|+.|+|...
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-------------~~v-------kTQLIAHDKEV~DIaf~~~  207 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-------------GTV-------KTQLIAHDKEVYDIAFLKG  207 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------------cce-------eeEEEecCcceeEEEeccC
Confidence            34567889999987889999999999999999975310             001       1257789999999999986


Q ss_pred             C-CEEEEEeCCCcEEEEecCCceeeeeecCCCC-ccceEEEEEcCCCCCCEEEEEeCC-CcEEEEECCC-ceeEEEEcCC
Q 048118           93 N-RQIVSASRDRTIKLWNTLGECKYTIQEGDAH-TEWVSCVRFSPNTLQPTIVSASWD-RTVKVWNLSN-CKLRATLAGH  168 (303)
Q Consensus        93 ~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~d-g~i~iwd~~~-~~~~~~~~~~  168 (303)
                      + ..||++|+||+||+||++.....++...++. ..+..-++|++.. .+++++-..| ..|.+.|++. ...+..+++|
T Consensus       208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H  286 (364)
T KOG0290|consen  208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNH  286 (364)
T ss_pred             ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence            5 4799999999999999977665666655554 5567778888865 3566665444 5688999975 4567889999


Q ss_pred             CCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCc------eEEEecCCCeEEEEEEcCC-CeEEEEEcCCcEEEE
Q 048118          169 TGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGK------RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIW  236 (303)
Q Consensus       169 ~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~------~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~iw  236 (303)
                      .+.|+.++|.|. ..+|++++.|.++-+||+...-      ++.....+..|+.+.|++. ..|++.+.+.++.+-
T Consensus       287 ~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  287 QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            999999999995 4689999999999999996532      2333456788999999975 579998888776653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=5.7e-19  Score=146.02  Aligned_cols=237  Identities=18%  Similarity=0.274  Sum_probs=169.6

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      ++.+.|...+--.+++.+.|..+++|.-..  ++..+++....                 .+.  .-.|++......+++
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g--~~~~Vp~~~k~-----------------~gd--~~~Cv~~~s~S~y~~   95 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDG--KTPEVPRVRKL-----------------TGD--NAFCVACASQSLYEI   95 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccC--CCCccceeecc-----------------ccc--hHHHHhhhhcceeee
Confidence            678888754322334446688999996432  22112211111                 111  112333334447899


Q ss_pred             EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEE
Q 048118           98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVA  176 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~  176 (303)
                      +|+..+.|+|||+...  ......+.|...|.++.++..+  .++++++..|.|.+..+.++....++.... ..|.-+.
T Consensus        96 sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~  171 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR  171 (673)
T ss_pred             ccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence            9999999999998642  2333445688899999999875  479999999999999998887777776543 4566899


Q ss_pred             ECCCCCE-EEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCe--EEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118          177 VSPDGSL-CASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRY--WLCAATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       177 ~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      |+|..++ |.+++.+|.|.+||+....++..+.  +..+...+||+|...  ++.++.|.+|++||.+.++..+.+... 
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-  250 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-  250 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec-
Confidence            9997775 5778899999999998877776653  467888999999753  445678999999999877665544321 


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                          .....++|+|+|.+|+.|+..|.|..||+
T Consensus       251 --------------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  251 --------------------HPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             --------------------CCcceeeecCCceEEEeecCCceEEEEec
Confidence                                11256899999999999999999999997

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.3e-17  Score=142.61  Aligned_cols=203  Identities=20%  Similarity=0.395  Sum_probs=159.8

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .+|.+++++.+...||.+-.||.|-+|++...... .+... +....|.+++|.+.   ..+.+.+.+|+|.-||+.+.+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEccC---CeEEeecCCceEEEEecccCc
Confidence            57899999999999999999999999998654221 22222 44567999999965   479999999999999999999


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCCe-EEEEEcCCcEEEE
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNRY-WLCAATEQSIKIW  236 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~~-~l~~~~~~~i~iw  236 (303)
                      ....+....+.|++++.+|.+..++.|++||.+..++...+...+..   ...+.+-+++|+|++. ++.++.||.|++|
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            98888888899999999999999999999998888887776655443   2357899999999998 5556679999999


Q ss_pred             eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |...+..+....+.+...            .+....-++++.|-.+ ..|++|.+-|+|.+||-.
T Consensus       182 d~~~~~t~~~~~~~~d~l------------~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRL------------SKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI  233 (691)
T ss_pred             EcCCCceEEEeeeccccc------------ccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence            999988776444332211            1123445677777644 589999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=2.1e-18  Score=138.91  Aligned_cols=212  Identities=21%  Similarity=0.321  Sum_probs=159.2

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.||+++|..+.|+|.++..+|+||.|.+|++|.+........        ...++        ..+.+|+..|-.++|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------ltepv--------v~L~gH~rrVg~V~w  139 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------LTEPV--------VELYGHQRRVGLVQW  139 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC--------cccce--------EEEeecceeEEEEee
Confidence            36899999999999999999999999999999999976543221        11222        246789999999999


Q ss_pred             eeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118           90 SIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        90 ~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~  168 (303)
                      +|.. ..|++++.|..|.+|+........  ..+ |...|.++.|+.++  ..+++.+.|..||+||.++++.+.+-.+|
T Consensus       140 HPtA~NVLlsag~Dn~v~iWnv~tgeali--~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  140 HPTAPNVLLSAGSDNTVSIWNVGTGEALI--TLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             cccchhhHhhccCCceEEEEeccCCceee--ecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccc
Confidence            9974 578999999999999985443221  122 88899999999987  57999999999999999999988877777


Q ss_pred             CCC-eeEEEECCCCCEEEEEe---CCCeEEEEeCCCC---ceEEEecCCCeEEEEEEcCCCeE--EEEEcCCcEEEEeCC
Q 048118          169 TGY-VNTVAVSPDGSLCASGG---KDGVILLWDLAEG---KRLYSLDAGAVIHALCFSPNRYW--LCAATEQSIKIWDLE  239 (303)
Q Consensus       169 ~~~-i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~i~iwd~~  239 (303)
                      .+. -.-+.|-.++..+.+|.   .++++-+||...-   -.+..++..+.|.---|.++..+  |++-.|+.|+-|.+.
T Consensus       215 eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  215 EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            642 33455666787665554   4789999987543   23445555555654556777544  445579999999986


Q ss_pred             CCc
Q 048118          240 SKS  242 (303)
Q Consensus       240 ~~~  242 (303)
                      +..
T Consensus       295 ~d~  297 (472)
T KOG0303|consen  295 NEP  297 (472)
T ss_pred             CCC
Confidence            543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=7.2e-18  Score=147.20  Aligned_cols=251  Identities=19%  Similarity=0.252  Sum_probs=173.4

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      ...|.++.|+|..+.++|.|..+|+|.+||+.......   ...+       +.       .-..|..++..+.|..+..
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~l-------s~-------~~~sh~~~v~~vvW~~~~~  304 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGL-------SA-------LEVSHSEPVTAVVWLQNEH  304 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---Cccc-------cc-------ccccCCcCeEEEEEeccCC
Confidence            35789999999999999999999999999997543211   0101       00       1235888999999987654


Q ss_pred             E--EEEEeCCCcEEEEecCCcee--e-----ee---ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---
Q 048118           95 Q--IVSASRDRTIKLWNTLGECK--Y-----TI---QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC---  159 (303)
Q Consensus        95 ~--l~t~~~d~~i~vw~~~~~~~--~-----~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~---  159 (303)
                      -  |++++.||.|..|++.....  .     ..   .........+.+++|.+.. ...++.|+.+|.|..-.-.+.   
T Consensus       305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~  383 (555)
T KOG1587|consen  305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPA  383 (555)
T ss_pred             CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCccc
Confidence            4  99999999999998632110  0     00   0011123457889998865 357889999999987443222   


Q ss_pred             -----eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CCceEEEecC-CCeEEEEEEcCCCe--EEEEEcC
Q 048118          160 -----KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EGKRLYSLDA-GAVIHALCFSPNRY--WLCAATE  230 (303)
Q Consensus       160 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~-~~~v~~~~~s~~~~--~l~~~~~  230 (303)
                           +....+..|.++|.++.++|-+..+...+.|-++++|.-. ...++..+.. ...+.+++|||...  ++++..+
T Consensus       384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~  463 (555)
T KOG1587|consen  384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD  463 (555)
T ss_pred             ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence                 1233556788999999999977655444449999999876 4455555543 45699999999873  3344568


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |.|.+||+.........+..                  .+......+.|++.|+.|++|...|.+++|+++
T Consensus       464 G~l~iWDLl~~~~~Pv~s~~------------------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  464 GNLDIWDLLQDDEEPVLSQK------------------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CceehhhhhccccCCccccc------------------ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            99999999755432222211                  111223457789999999999999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-18  Score=142.95  Aligned_cols=199  Identities=20%  Similarity=0.271  Sum_probs=155.2

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      -+||+.... ..++++||..++++|||+...     .+.                  ..+++|++.|+++.++...+++|
T Consensus        82 ~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~k-----l~h------------------r~lkdh~stvt~v~YN~~DeyiA  137 (673)
T KOG4378|consen   82 AFCVACASQ-SLYEISGGQSGCVKIWDLRAK-----LIH------------------RFLKDHQSTVTYVDYNNTDEYIA  137 (673)
T ss_pred             HHHHhhhhc-ceeeeccCcCceeeehhhHHH-----HHh------------------hhccCCcceeEEEEecCCcceeE
Confidence            345554433 379999999999999998521     111                  13467999999999999999999


Q ss_pred             EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-cCCCCCeeEEE
Q 048118           98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVA  176 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~  176 (303)
                      +++..|-|.|..+....+.... .......++-++++|.. ...+.+++.+|.|.+||.....+...+ ..|..+...++
T Consensus       138 svs~gGdiiih~~~t~~~tt~f-~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic  215 (673)
T KOG4378|consen  138 SVSDGGDIIIHGTKTKQKTTTF-TIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC  215 (673)
T ss_pred             EeccCCcEEEEecccCccccce-ecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence            9999999999987544332211 12223456789999975 457888999999999999877665544 56899999999


Q ss_pred             ECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCc
Q 048118          177 VSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKS  242 (303)
Q Consensus       177 ~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~  242 (303)
                      |+|..+ +|++.+.|.+|.+||.+.......+....+...++|+++|.+|+++ ..|.|..||++..+
T Consensus       216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence            999654 6788999999999999987777777778889999999999888776 58999999998643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1e-18  Score=146.46  Aligned_cols=255  Identities=24%  Similarity=0.336  Sum_probs=172.8

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      +..+++.|.+-|..+.|+|..+ -|+||+.|++|++|++.+..+ ...              ..+-|--.|.+|.++|.|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~-s~~--------------~~~epi~tfraH~gPVl~  349 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKK-SAE--------------KDVEPILTFRAHEGPVLC  349 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCC-ccc--------------cceeeeEEEecccCceEE
Confidence            3447889999999999998754 699999999999999943110 000              000111257899999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCce----ee----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGEC----KY----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~----~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      +++.++++.+++|+.||+|+.|++....    .+    .....-+|.+.+..+++|+..  ..+++++.||+++.|....
T Consensus       350 v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  350 VVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             EEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCC
Confidence            9999999999999999999999653110    00    011123688889999999865  4589999999999998765


Q ss_pred             ceeEEEEcCC--CCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeE-EE
Q 048118          159 CKLRATLAGH--TGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYW-LC  226 (303)
Q Consensus       159 ~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~-l~  226 (303)
                      ... .++...  .+.-+++.+-... .+.++...-+.-.+.++...+.+..+..        ...++-+.++|...+ +.
T Consensus       428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~  506 (577)
T KOG0642|consen  428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT  506 (577)
T ss_pred             cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence            444 333221  2233455553322 1223333334444445554444444321        134666777887644 44


Q ss_pred             EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +-.++.|+++|..+++++.....                    +...++++++-|.|.+|++|+.||.+++|.+
T Consensus       507 ~hed~~Ir~~dn~~~~~l~s~~a--------------------~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  507 AHEDRSIRFFDNKTGKILHSMVA--------------------HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             cccCCceecccccccccchheee--------------------ccceecceeecCCCceEEeecCCceeehhhc
Confidence            55789999999998887654332                    3345678999999999999999999999987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=2e-17  Score=130.28  Aligned_cols=252  Identities=21%  Similarity=0.311  Sum_probs=163.7

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccc-eeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe-------e
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS-------I   91 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~-------~   91 (303)
                      ...|+|++. .|++-+.|..+.+|++....-..+ .....+..    ...+.      +. ....|+..+|-       |
T Consensus        54 gckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~----~~~~r------~~-eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   54 GCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSK----HLSYR------YQ-EGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             cceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcccccc----ceeEE------ec-cCCEEEEEEeeeccccCCC
Confidence            467999875 688899999999999865321111 00000000    00111      10 12346666665       5


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCc---cceEEEEEcCCCCCCEEEEEeCCCcEEEEEC-CCce---eEEE
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT---EWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCK---LRAT  164 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~-~~~~---~~~~  164 (303)
                      +..++++.+.|.-|++||............-.|.   ....+++|+|++.+   +.++.+..|++||. +.+.   ...+
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq---lfaGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ---LFAGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe---EeecccceEEEeeccCCCCCCcchhh
Confidence            6679999999999999997543222111111122   23468999999843   44678999999998 4432   1111


Q ss_pred             E----cCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEc--CCcEEEE
Q 048118          165 L----AGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAAT--EQSIKIW  236 (303)
Q Consensus       165 ~----~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~~i~iw  236 (303)
                      +    .+..+.+.+++|+|.. ..+++++...++-|+.-..+.+++.+ ..+..|+.++|.++|..+.++.  +..|.+|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence            1    2346788999999954 58899999999999988777777766 3467899999999998776664  7899999


Q ss_pred             eCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          237 DLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       237 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                      |+|..+. +-.+.-+       ...+.       ..+   -.+..|++.+|++|+.||.|++||+..|
T Consensus       279 DiR~~~~pv~~L~rh-------v~~TN-------QRI---~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  279 DIRYSRDPVYALERH-------VGDTN-------QRI---LFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             eehhccchhhhhhhh-------ccCcc-------ceE---EEecCCCCceeeccCCCccEEEEecCCC
Confidence            9986432 1111100       00011       111   1345689999999999999999998653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=1.2e-17  Score=142.92  Aligned_cols=223  Identities=20%  Similarity=0.329  Sum_probs=170.7

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------   76 (303)
                      .++.++++|++.|++++++.++ ..||+|+.|..+.+|.-.- +   +.  .+. .|...|++..++|-.+         
T Consensus        44 ~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl-E---G~--LkY-SH~D~IQCMsFNP~~h~LasCsLsd  115 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL-E---GI--LKY-SHNDAIQCMSFNPITHQLASCSLSD  115 (1081)
T ss_pred             ccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccc-c---ce--eee-ccCCeeeEeecCchHHHhhhcchhh
Confidence            6778999999999999999765 6899999999999997531 1   11  111 3666777777766322         


Q ss_pred             ----------eecc--cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC---CCE
Q 048118           77 ----------FVGH--TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL---QPT  141 (303)
Q Consensus        77 ----------~~~h--~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~  141 (303)
                                ...|  ...+.+++|..||.+++.|-.+|+|.+-+..++++..+....+.+.+|.+++|+|+..   ...
T Consensus       116 FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di  195 (1081)
T KOG1538|consen  116 FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDI  195 (1081)
T ss_pred             ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence                      1123  3468899999999999999999999999888877777766556788999999999643   236


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP  220 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~  220 (303)
                      ++...+..++.+|.+... ....-+.-.-.-.++.+-|+|++++.|+.|+.++++- +.|-.+.+. +....|..++..|
T Consensus       196 ~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  196 LAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP  273 (1081)
T ss_pred             EEEEeccceeEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence            788899999999988543 3322222223456788999999999999999999996 556666666 3467999999999


Q ss_pred             CCeEEE-EEcCCcEEEEeC
Q 048118          221 NRYWLC-AATEQSIKIWDL  238 (303)
Q Consensus       221 ~~~~l~-~~~~~~i~iwd~  238 (303)
                      +++.++ ++.||.|..||+
T Consensus       274 NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  274 NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CCceEEEEEccCeeehhhh
Confidence            987665 567999999996

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=6.6e-18  Score=133.11  Aligned_cols=264  Identities=17%  Similarity=0.277  Sum_probs=174.1

Q ss_pred             ccccccceeeeecCC----CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118           11 MRAHTDMVTAIATPI----DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~----~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      .+.|+.+|+.+.|++    +....|+|+|.+ .+.+|+...+....  ..+..           ..+     .|...-+.
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir--~lq~y-----------~D~-----d~~Esfyt   94 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIR--LLQSY-----------ADE-----DHDESFYT   94 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcccee--eeeec-----------cCC-----CCCcceEE
Confidence            466878999999874    344667777664 78888876432100  00100           001     25566677


Q ss_pred             EEEeeCC----CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           87 VAFSIDN----RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        87 i~~~~~~----~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      ++|+.+.    -++|.+|.-|.|+|.|......  .....+|-..|+.++++|... +++++++.|.+||+|++++..++
T Consensus        95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv  171 (385)
T KOG1034|consen   95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCV  171 (385)
T ss_pred             EEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEE
Confidence            8887653    3788888999999999854321  223346778899999999863 58999999999999999999988


Q ss_pred             EEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce------EEEecC-----------------------C
Q 048118          163 ATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR------LYSLDA-----------------------G  210 (303)
Q Consensus       163 ~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~-----------------------~  210 (303)
                      ..+   .+|.+.|.++.|+++|.+|++++-|.++++|++...+.      ...+..                       .
T Consensus       172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr  251 (385)
T KOG1034|consen  172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR  251 (385)
T ss_pred             EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence            765   56999999999999999999999999999999974321      111110                       0


Q ss_pred             CeEEEEEEcCCCeEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          211 AVIHALCFSPNRYWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      ..|.++.|-- ..+|.-+.++.|.+|... -.+-+.+.+.     .+...........+....+....+|.|-+++||.|
T Consensus       252 nyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp-----~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  252 NYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKP-----PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             chHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCC-----CccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            1122222221 233444567899999862 2221111111     11111111223334445555667778889999999


Q ss_pred             ecCCeEEEEeccc
Q 048118          290 YTDGVIRVWGIGR  302 (303)
Q Consensus       290 s~Dg~v~~w~~~~  302 (303)
                      .+.|.|.+||+..
T Consensus       326 nq~g~v~vwdL~~  338 (385)
T KOG1034|consen  326 NQSGKVYVWDLDN  338 (385)
T ss_pred             cCCCcEEEEECCC
Confidence            9999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=143.23  Aligned_cols=249  Identities=19%  Similarity=0.358  Sum_probs=169.1

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .|+.++|-|++..++++++  ..+.+||.+.+...                       ..+++|++.|++++|+.+|+++
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~ll-----------------------qtLKgHKDtVycVAys~dGkrF   68 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLL-----------------------QPLKGHKDTVYCVAYAKDGKRF   68 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccc-----------------------cccccccceEEEEEEccCCcee
Confidence            6899999999887766654  47889998765421                       1457899999999999999999


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEE
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVA  176 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  176 (303)
                      ++|+.|+.|.+|...-+...  .  -.|.+.|.|..|+|-..  .+++++- ...-+|..... .+.+.+ ....+.+.+
T Consensus        69 ASG~aDK~VI~W~~klEG~L--k--YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK-~V~K~k-ss~R~~~Cs  139 (1081)
T KOG1538|consen   69 ASGSADKSVIIWTSKLEGIL--K--YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQK-SVSKHK-SSSRIICCS  139 (1081)
T ss_pred             ccCCCceeEEEeccccccee--e--eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhh-hHHhhh-hheeEEEee
Confidence            99999999999985332221  1  24788899999999652  3555443 34556765332 222222 235788899


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCCC-----eEEEEE-cCCcEEEEeCCCCceeee
Q 048118          177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPNR-----YWLCAA-TEQSIKIWDLESKSIVED  246 (303)
Q Consensus       177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~-----~~l~~~-~~~~i~iwd~~~~~~~~~  246 (303)
                      |..||++|+.|-.+|+|.+-+-...+.+ .++    ..++|.+++|+|..     ..+++. -...+.+|.+....+-++
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~  218 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEEKV-KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD  218 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCcce-EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc
Confidence            9999999999999999999875443333 332    35789999999962     344443 466788888754433222


Q ss_pred             eeecccccccc------------cc--------CccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          247 LKVDLKTEAEK------------SE--------ATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       247 ~~~~~~~~~~~------------~~--------~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      -.....+.+..            .+        ......+......+++.+...|.+.+++.|+.||++-.|++
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            22211111100            00        00011223345567899999999999999999999998876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=3.4e-18  Score=145.44  Aligned_cols=184  Identities=23%  Similarity=0.391  Sum_probs=133.2

Q ss_pred             cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce--ecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecC
Q 048118           35 SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF--VGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTL  111 (303)
Q Consensus        35 s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~  111 (303)
                      |..|.|.||++....+..                     ++-+  .-....|..+.|+| |.++|+.++.|+.|++|.+.
T Consensus       600 g~gG~iai~el~~PGrLP---------------------Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~  658 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLP---------------------DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLT  658 (1012)
T ss_pred             CCCceEEEEEcCCCCCCC---------------------cccccccccCceeeecccCCCChHHeeecccCceEEEEEec
Confidence            556889999887543221                     1111  11345788999998 56789999999999999874


Q ss_pred             Ccee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEE
Q 048118          112 GECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS  186 (303)
Q Consensus       112 ~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  186 (303)
                      .+..     ........|.+.|.++.|||-. ...+++++.|.+|++||+.+.+....+.+|.+.|.+++|||+|+.+++
T Consensus       659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At  737 (1012)
T KOG1445|consen  659 ANGLPENEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT  737 (1012)
T ss_pred             cCCCCcccCCcceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence            3211     1111223578889999999954 347889999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCc-eEEEecC--CCeEEEEEEcCCCe-EEEEEc----CCcEEEEeCCC
Q 048118          187 GGKDGVILLWDLAEGK-RLYSLDA--GAVIHALCFSPNRY-WLCAAT----EQSIKIWDLES  240 (303)
Q Consensus       187 ~~~d~~v~iwd~~~~~-~~~~~~~--~~~v~~~~~s~~~~-~l~~~~----~~~i~iwd~~~  240 (303)
                      .+.||++++|+.++++ +++.-..  +..--.+.|--+|. +++++.    ..+|.+||.++
T Consensus       738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            9999999999998764 3433221  22222344555665 445543    45688888654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.78  E-value=9.1e-18  Score=137.55  Aligned_cols=209  Identities=21%  Similarity=0.266  Sum_probs=155.4

Q ss_pred             ceecccCCEEEEEEeeCC--CEEEEEeCCCcEEEEecCCc--eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           76 QFVGHTKDVLSVAFSIDN--RQIVSASRDRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~--~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      .+.-+.++|.+++|+|..  +++|+|+.-|.|-+||+...  ....+..+.+|..+|.++.|+|... ..+++.+.||+|
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti  259 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI  259 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence            355688999999999975  58899999999999998422  2223445567899999999999764 468889999999


Q ss_pred             EEEECCCceeEEEEcC--CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE-Ee-cCCCeEEEEEEcCCC--eEE
Q 048118          152 KVWNLSNCKLRATLAG--HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY-SL-DAGAVIHALCFSPNR--YWL  225 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~s~~~--~~l  225 (303)
                      +.-|+++......+..  -...+.++.|+.+.+.++.+..=|...+||++++...+ .+ .+...|.+++++|-.  .++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence            9999987654333322  33456778888888888888887899999998765422 22 234489999999975  344


Q ss_pred             EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          226 CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       226 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++.|+..+|||++.-.....                +....-.|...|.+..|||.+..|+|.+.|..|||||.+
T Consensus       340 T~s~D~T~kIWD~R~l~~K~s----------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKAS----------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ecccCcceeeeehhhhcCCCC----------------cceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            556799999999975221110                011223456667889999999899999999999999974

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=128.15  Aligned_cols=246  Identities=16%  Similarity=0.258  Sum_probs=160.7

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .|++|..+|+++.|..+  ++|.+|..-|.+++|.+..+....     .+..                 .|...|+.+..
T Consensus         9 vLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~-----~~r~-----------------~g~~~it~lq~   64 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLP-----LIRL-----------------FGRLFITNLQS   64 (323)
T ss_pred             Eeccccchheehhhccc--hhhhcccccceEEEEEeecCccch-----hhhh-----------------hccceeeceee
Confidence            46699999999999743  469999999999999987542110     0110                 12333444444


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCc---------------eee--------------------------------eee---
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGE---------------CKY--------------------------------TIQ---  119 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~---------------~~~--------------------------------~~~---  119 (303)
                      -|+ ..+.+-+.|..+.+|++...               +..                                .+.   
T Consensus        65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d  143 (323)
T KOG0322|consen   65 IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD  143 (323)
T ss_pred             cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence            443 23444455555555543110               000                                000   


Q ss_pred             -cCCCCccceEEEEEcCC-CCCCEEEEEeCCCcEEEEECCCc----------eeEEEEcCCCCCeeEEEECCCCCEEEEE
Q 048118          120 -EGDAHTEWVSCVRFSPN-TLQPTIVSASWDRTVKVWNLSNC----------KLRATLAGHTGYVNTVAVSPDGSLCASG  187 (303)
Q Consensus       120 -~~~~~~~~i~~~~~~~~-~~~~~~~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~  187 (303)
                       ......+.+.|..+... .....+++|..+|.+.+||+.++          +....+..|.++|.++.+.+....=++|
T Consensus       144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence             01122334555554332 23446778889999999999886          3334456789999999998755555778


Q ss_pred             eCCCeEEEEeCCCCce---EE-Ee-cCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCc
Q 048118          188 GKDGVILLWDLAEGKR---LY-SL-DAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEAT  261 (303)
Q Consensus       188 ~~d~~v~iwd~~~~~~---~~-~~-~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (303)
                      +.+..+.+|++.....   +. .+ .....+..+.+.||++++|++ -|++|++|+.++...+..+              
T Consensus       224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL--------------  289 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL--------------  289 (323)
T ss_pred             CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh--------------
Confidence            8888899999864321   11 11 123446677888999888765 5999999999887655433              


Q ss_pred             cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                            +.|...+++++|+|+...+|.+|.|++|-+|++
T Consensus       290 ------kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 ------KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                  445566899999999999999999999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=5.3e-17  Score=137.24  Aligned_cols=200  Identities=22%  Similarity=0.331  Sum_probs=149.1

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      |.||++.|.+|+..|.|.+|++|+.||+||||.+.+ .+.+.++.    ...|.|++|+|.+....++++-.+ .+.+-+
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn  470 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN  470 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence            679999999999999999999999999999999854 44444432    235999999998754444444333 233332


Q ss_pred             C---------------------------------CCc----eeEEEEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEE
Q 048118          156 L---------------------------------SNC----KLRATLAGHTGYVNTVAVSPDGSLCASGGKD---GVILL  195 (303)
Q Consensus       156 ~---------------------------------~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~i  195 (303)
                      .                                 ...    .-+.....|...|..+.|+-.|.||++...+   ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            1                                 100    0011233467789999999999999987654   47888


Q ss_pred             EeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeE
Q 048118          196 WDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       196 wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                      .++........+ .....+..+.|+|....+.+++...|++||+..+.+++++..                    ..-++
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t--------------------g~kwi  610 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT--------------------GSKWI  610 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc--------------------CCeee
Confidence            888655433333 345788999999999999999999999999988877766532                    12356


Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          275 TSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       275 ~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..++.+|.|..|+.|+.|+.+..||++
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcc
Confidence            778999999999999999999999885

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.75  E-value=1e-16  Score=136.40  Aligned_cols=227  Identities=17%  Similarity=0.245  Sum_probs=146.8

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCc--cccceeeeeecCCCcc---eEEEEeCCCCceecccCCEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEE--KTYGVARRRLTGHSHF---VQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~h~~~i~   85 (303)
                      +.||...|.+++|.|.+...|+||+.||.|.|||+....  .....+......|...   ...+ -....+.++|...|.
T Consensus       140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~-~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL-KKRIRKWKAASNTIF  218 (720)
T ss_pred             ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh-hccccccccccCcee
Confidence            889999999999999999999999999999999985322  1101111111111110   0000 001123456666666


Q ss_pred             E---EEEeeCCCEEEEEeC-CCcEEEEecCCceeee------eecCCCC---ccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118           86 S---VAFSIDNRQIVSASR-DRTIKLWNTLGECKYT------IQEGDAH---TEWVSCVRFSPNTLQPTIVSASWDRTVK  152 (303)
Q Consensus        86 ~---i~~~~~~~~l~t~~~-d~~i~vw~~~~~~~~~------~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~dg~i~  152 (303)
                      +   +-+..|...||++++ |+.|+|||+.......      ......+   .-.+.++.....  ..++.+.+.|+.|+
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss--Gt~L~AsCtD~sIy  296 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS--GTYLFASCTDNSIY  296 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC--CCeEEEEecCCcEE
Confidence            6   667788889999988 9999999986432110      0000111   223455555443  35677777799999


Q ss_pred             EEECCCce--eEEEEcCCCCC-e-eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCC--CeE
Q 048118          153 VWNLSNCK--LRATLAGHTGY-V-NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN--RYW  224 (303)
Q Consensus       153 iwd~~~~~--~~~~~~~~~~~-i-~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~--~~~  224 (303)
                      +|++....  +...+.++... + ..-..+|++.+|++|+.|...++|.+...+.--..  -+.-.|.+++|.|.  ..+
T Consensus       297 ~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v  376 (720)
T KOG0321|consen  297 FYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV  376 (720)
T ss_pred             EEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCc
Confidence            99986532  33344443321 1 12246899999999999999999998765432222  23456888999775  577


Q ss_pred             EEEEcCCcEEEEeCCC
Q 048118          225 LCAATEQSIKIWDLES  240 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~  240 (303)
                      ++++.|..+.+|++..
T Consensus       377 ~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  377 ATCSDDFRVKIWRLSN  392 (720)
T ss_pred             eeeccCcceEEEeccC
Confidence            8888899999999854

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=7e-16  Score=124.63  Aligned_cols=270  Identities=15%  Similarity=0.197  Sum_probs=175.8

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccc-eeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-VARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ..+.+|.+-|+++.|+- ++++||+|+.|..+++|++...-.... .+.. +                .-..|...|.++
T Consensus        50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~----------------~~~~H~SNIF~L  111 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-V----------------MEHPHRSNIFSL  111 (609)
T ss_pred             hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCce-e----------------ccCccccceEEE
Confidence            35889999999999995 478999999999999999853210000 0000 0                011367899999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEE--E
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRA--T  164 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~--~  164 (303)
                      +|......+.+|+.+++|.+.|+.......+.........|..+..+|.  .+.+++.+.++.|.+||.+..+ ...  -
T Consensus       112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceee
Confidence            9999999999999999999999876555444433333447889988886  3689999999999999997654 211  1


Q ss_pred             EcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce-EEE------ecC-C-------------------------
Q 048118          165 LAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR-LYS------LDA-G-------------------------  210 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~------~~~-~-------------------------  210 (303)
                      ..........+.|+|.. .+|++.+..+-+.+||.+..+. ++.      ++. .                         
T Consensus       190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~  269 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL  269 (609)
T ss_pred             ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence            22233456778899965 5778888999999999865321 000      000 0                         


Q ss_pred             ------------------------CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccc----cCc
Q 048118          211 ------------------------AVIHALCFSPNRYWLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKS----EAT  261 (303)
Q Consensus       211 ------------------------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~----~~~  261 (303)
                                              ..+.+++|-.+..++.++.+=.|++|.+-..- ...-.  ++....+..    -..
T Consensus       270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~--~IG~~~~~~~~~~~i~  347 (609)
T KOG4227|consen  270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFT--QIGHDEEEMPSEIFIE  347 (609)
T ss_pred             EeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCcc--ccCcchhhCchhheec
Confidence                                    02333444433333333334467777763210 00000  011100011    112


Q ss_pred             cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .....+++|...++.+.|+|...+|++.+-.+.+++|.-
T Consensus       348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            233467788888999999999999999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.9e-16  Score=139.83  Aligned_cols=254  Identities=19%  Similarity=0.279  Sum_probs=166.5

Q ss_pred             eeeee-cCCCCCcEEEEecCCCcEEEEEcccCc-cccceeeeeecCCCcceEEEEeCC-CCceecccCCEEEEEEeeCCC
Q 048118           18 VTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEE-KTYGVARRRLTGHSHFVQDVVLSS-DGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        18 v~~v~-~~~~~~~~~~t~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      |+.+. .+-.+..++++|+.||.||||+-.... ++...           |+  +|.+ .+...+-.+.-.-++|.....
T Consensus      1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL-----------VT--aw~~Ls~~~~~~r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL-----------VT--AWSSLSDQLPGARGTGLVVDWQQQSG 1178 (1387)
T ss_pred             cceeeeecccchhheeeeccCceEEEecccccccCCcee-----------EE--eeccccccCccCCCCCeeeehhhhCC
Confidence            44443 344456799999999999999754321 11100           00  1111 122222222224468888777


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcCCCCC
Q 048118           95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAGHTGY  171 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~  171 (303)
                      +|+++|.-..|+|||...+....-... ..+.-++++.-+... .+.+++|..||+|++||.+...   .+...+.|+..
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~-~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPY-GSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             eEEecCCeeEEEEEecccceeEeeccc-CCCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            777777789999999865433221111 122334554433322 3678999999999999987532   45667788876


Q ss_pred             --eeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceE--EEe----cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc
Q 048118          172 --VNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRL--YSL----DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS  242 (303)
Q Consensus       172 --i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~--~~~----~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~  242 (303)
                        |..+.+.+.|- .|++|+.+|.|++||++.....  .++    +.++..+++..+++..++|+++.+.|.||++...+
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence              99999988764 5999999999999999874221  122    23556889999999999999888999999986543


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                       +..++..             ...+......+.+++|+|...++|+|+.|.+|.+|.-
T Consensus      1337 -l~~~k~n-------------~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1337 -LNIIKYN-------------PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             -hcccccC-------------cccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence             3222211             0011112223478999999999999999999999964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=9.1e-17  Score=129.95  Aligned_cols=207  Identities=22%  Similarity=0.380  Sum_probs=148.2

Q ss_pred             CCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCc-------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           82 KDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGE-------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        82 ~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      .++..+.|.++.. .++||+.|..|++|.+...       ..........|...|+++.|+|++  ..+++|+.+|.|.+
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g--elLASg~D~g~v~l   91 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG--ELLASGGDGGEVFL   91 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--CeeeecCCCceEEE
Confidence            4788899998876 9999999999999976321       111223344688889999999987  47999999999999


Q ss_pred             EECC--------C--------ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEE
Q 048118          154 WNLS--------N--------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHAL  216 (303)
Q Consensus       154 wd~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  216 (303)
                      |...        +        ......+.+|...|..++|+|+++++++++-|..+++||+..|+.+.... +...++.+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9765        2        22345677899999999999999999999999999999999999887764 46789999


Q ss_pred             EEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeecccccc-ccccCccceeecc--ccceeEEEEEEcCCCCEEEEee
Q 048118          217 CFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEA-EKSEATTATTTIK--KKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       217 ~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      +|.|-.++++. +.|...+.+.+...+.+........... ..+........++  ....+...++|+|+|.+|++..
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            99998877765 5576677777665555444331111111 0111111111111  1223456789999999998764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1e-14  Score=123.46  Aligned_cols=255  Identities=14%  Similarity=0.172  Sum_probs=154.7

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      ++++.++.. ......+.++|++..+++++..++.|.+|++..... .... .          ..         ...+..
T Consensus        25 l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~-~----------~~---------~~~~~p   82 (330)
T PRK11028         25 LTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFA-A----------ES---------PLPGSP   82 (330)
T ss_pred             eeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEe-e----------ee---------cCCCCc
Confidence            344555542 345667888987654445556688999999863211 0000 0          00         011235


Q ss_pred             EEEEEeeCCCEEEEEeC-CCcEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           85 LSVAFSIDNRQIVSASR-DRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~-d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ..++++|+++++++++. ++.|.+|++.....  ...... .+.....+++++|++ ...+++...++.|.+||+.+...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCc
Confidence            67999999998887764 78999998753211  111111 122235678899986 33446666779999999976321


Q ss_pred             EE-------EEcCCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCC--Cc--eEEEecC-------CCeEEEEEEcCCC
Q 048118          162 RA-------TLAGHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLAE--GK--RLYSLDA-------GAVIHALCFSPNR  222 (303)
Q Consensus       162 ~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~~-------~~~v~~~~~s~~~  222 (303)
                      ..       .... ......+.|+|++++++++.. +++|.+|++..  ++  .+..+..       ......+.++|++
T Consensus       161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            11       1111 233567899999999987776 89999999973  22  2333221       1123358899998


Q ss_pred             eEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-CCeEEEEe
Q 048118          223 YWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-DGVIRVWG  299 (303)
Q Consensus       223 ~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-Dg~v~~w~  299 (303)
                      .++.++.  ++.|.+|+++.......+.-....                 ......+.++|+|++|++++. +++|.+|+
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-----------------~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-----------------ETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-----------------cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            8776653  678999998543211111100000                 012245789999999998775 99999998


Q ss_pred             cc
Q 048118          300 IG  301 (303)
Q Consensus       300 ~~  301 (303)
                      ++
T Consensus       303 ~~  304 (330)
T PRK11028        303 ID  304 (330)
T ss_pred             Ec
Confidence            74

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=119.26  Aligned_cols=194  Identities=14%  Similarity=0.188  Sum_probs=141.2

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      -.++.|++.|.+||.|+.||.|.+||..+....  ....+|..+|.+++|++++  ..+++++.|.+|.+||+..+.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~lsaH~~pi~sl~WS~dg--r~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLSAHVRPITSLCWSRDG--RKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhhccccceeEEEecCCC--CEeeeecCCceeEEEeccCCCcee
Confidence            568999999999999999999999998543221  2234688899999999997  479999999999999999998887


Q ss_pred             EEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCce-EEEecC----CCeEEEEEEcCCCeEEEE-EcCCcEEEE
Q 048118          164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKR-LYSLDA----GAVIHALCFSPNRYWLCA-ATEQSIKIW  236 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~----~~~v~~~~~s~~~~~l~~-~~~~~i~iw  236 (303)
                      .+. ...+|+...|+|..+ .+++.--+..-.+-++..+.. +...+.    ........|.+.|.++.+ .+-|.+.+|
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            776 467999999999543 444333344445555543221 111111    112222357777766654 467999999


Q ss_pred             eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |.++.+.+..+++..                   ...+..+.++..|+.|+..++|..||.|++.
T Consensus       181 ~a~t~e~vas~rits-------------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  181 DAETLECVASFRITS-------------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ecchheeeeeeeech-------------------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            999888777665431                   1234568889999999999999999999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=4.4e-14  Score=122.43  Aligned_cols=244  Identities=36%  Similarity=0.604  Sum_probs=174.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc-CCEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT-KDVLSVA   88 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~-~~i~~i~   88 (303)
                      .+..|...+..+.+.+.+ ..++.++.|+.+.+|+......    ....                  +.++. ..+..+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~----~~~~------------------~~~~~~~~~~~~~  116 (466)
T COG2319          60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK----LIKS------------------LEGLHDSSVSKLA  116 (466)
T ss_pred             eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce----eEEE------------------EeccCCCceeeEE
Confidence            356788999999999765 5788888999999999865420    0111                  11111 2455555


Q ss_pred             E-eeCCC-EEEEEeC-CCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCceeEE
Q 048118           89 F-SIDNR-QIVSASR-DRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKLRA  163 (303)
Q Consensus        89 ~-~~~~~-~l~t~~~-d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~~~  163 (303)
                      + ++++. .++..+. |+.+.+|+... ...  ......|...+..++|+|++.  .++.++. ++.+++|+....+...
T Consensus       117 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  192 (466)
T COG2319         117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKL--IRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLS  192 (466)
T ss_pred             EECCCcceEEeccCCCCccEEEEEecCCCeE--EEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEE
Confidence            5 67776 5555444 99999999864 111  222245777889999999863  5666765 9999999998878888


Q ss_pred             EEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEE-EecCC-CeEEEEEEcCCC-eEEEEEcCCcEEEEeCC
Q 048118          164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLY-SLDAG-AVIHALCFSPNR-YWLCAATEQSIKIWDLE  239 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~-~~~~~-~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~  239 (303)
                      .+.+|...+.+++++|++. .+++++.|+.+++||...+..+. .+... ... ...|+|++ .+++++.++.+++|+.+
T Consensus       193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            8888999999999999998 55555899999999988777666 34322 222 22799998 45556779999999997


Q ss_pred             CCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          240 SKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       240 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .... +..+                    ..+...+..+.|+|++..+++++.|+.+++|++.
T Consensus       272 ~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         272 SSSSLLRTL--------------------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             CCCcEEEEE--------------------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence            6543 1111                    1123445677899988888889999999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=6.6e-14  Score=112.39  Aligned_cols=235  Identities=16%  Similarity=0.258  Sum_probs=158.5

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      ...++.+.|+.+ ...|..|+.|| .++|..++.++..    ....                   ..-.|.-+-|+  ..
T Consensus         5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~----~~~~-------------------~~~~IvEmLFS--SS   57 (391)
T KOG2110|consen    5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCF----SKDT-------------------EGVSIVEMLFS--SS   57 (391)
T ss_pred             Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhh----cccC-------------------CCeEEEEeecc--cc
Confidence            345677778754 34566666665 6778776544311    0000                   00123333344  34


Q ss_pred             EEEEEeCC--CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC---C
Q 048118           95 QIVSASRD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH---T  169 (303)
Q Consensus        95 ~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---~  169 (303)
                      ++|..+.+  +.+++.++.......-.   .....|.+++++.+    .++++ -.+.|+|||+++.++..++..-   .
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~---~fpt~IL~VrmNr~----RLvV~-Lee~IyIydI~~MklLhTI~t~~~n~  129 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEI---FFPTSILAVRMNRK----RLVVC-LEESIYIYDIKDMKLLHTIETTPPNP  129 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEE---ecCCceEEEEEccc----eEEEE-EcccEEEEecccceeehhhhccCCCc
Confidence            55555544  34888887654433222   12456889999865    35544 3445999999999988877543   3


Q ss_pred             CCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcC-C-cEEEEeCCCCcee
Q 048118          170 GYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATE-Q-SIKIWDLESKSIV  244 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-~-~i~iwd~~~~~~~  244 (303)
                      ..+.++.+++.+.+++--+  ..|.|.+||+.+-+++..+. +.+.+-+++|+++|.++|.+++ | -|++|.+.+++.+
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl  209 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL  209 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe
Confidence            3455566666666887533  47899999999888877775 4678999999999999988765 3 4899999999888


Q ss_pred             eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .+++-                  ......+.+++|+|++.+|++.|+.++|++|.+.+
T Consensus       210 ~eFRR------------------G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  210 YEFRR------------------GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeeeC------------------CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            76642                  11234568899999999999999999999998853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.71  E-value=1.3e-15  Score=120.20  Aligned_cols=223  Identities=23%  Similarity=0.369  Sum_probs=153.9

Q ss_pred             CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC---CEEEEEEeeCCCEEEEEeCCC
Q 048118           27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK---DVLSVAFSIDNRQIVSASRDR  103 (303)
Q Consensus        27 ~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~---~i~~i~~~~~~~~l~t~~~d~  103 (303)
                      ...++|+.+.|.-|.+||.-.++.     +..+.+                ..|.+   .-.+++|+|||++|.+| ...
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~l-----raSy~~----------------ydh~de~taAhsL~Fs~DGeqlfaG-ykr  179 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKL-----RASYRA----------------YDHQDEYTAAHSLQFSPDGEQLFAG-YKR  179 (406)
T ss_pred             ccceeeeccccCceeeeecccccc-----ccchhh----------------hhhHHhhhhheeEEecCCCCeEeec-ccc
Confidence            357999999999999999854331     111110                11222   23579999999999865 457


Q ss_pred             cEEEEecCCc-e---eee-eec-CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEE
Q 048118          104 TIKLWNTLGE-C---KYT-IQE-GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV  177 (303)
Q Consensus       104 ~i~vw~~~~~-~---~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  177 (303)
                      .|+++|+... +   .+. +.. .......|.|++|+|... ..++.|+.-..+-+|.-.++.+...+-+|.+.|+.+.|
T Consensus       180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEe
Confidence            8999997321 1   111 111 123355688999999763 36788888888888887788888888899999999999


Q ss_pred             CCCCCEEEEEeC-CCeEEEEeCCC-CceEEEecC----CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC-Cceeeeeee
Q 048118          178 SPDGSLCASGGK-DGVILLWDLAE-GKRLYSLDA----GAVIHALCFSPNRYWLCAA-TEQSIKIWDLES-KSIVEDLKV  249 (303)
Q Consensus       178 ~~~~~~l~~~~~-d~~v~iwd~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~-~~~~~~~~~  249 (303)
                      .++|+.|.+|++ |-.|-.||++. +++++.+..    ...--.+...|.+.+|+++ ++|.|++||++. +..+.    
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s----  334 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS----  334 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc----
Confidence            999999999985 78999999985 445555421    1222235567889999887 799999999976 32111    


Q ss_pred             ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118          250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD  292 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D  292 (303)
                                      ....+...++.++++|-=+++||+|..
T Consensus       335 ----------------v~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  335 ----------------VTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ----------------ccccccccccceecCcccceeeeccCc
Confidence                            111222334667788876677776643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3e-16  Score=131.69  Aligned_cols=226  Identities=19%  Similarity=0.363  Sum_probs=154.2

Q ss_pred             CCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           74 DGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        74 ~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      +..+.||++-|+++.|+.+|.+|++|+.|-.+.|||... .+......-+|...|.+++|-|......+++|..|..|++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            346789999999999999999999999999999999753 2222223346889999999999876678899999999999


Q ss_pred             EECCCc----------eeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEE----------Ee-cCCC
Q 048118          154 WNLSNC----------KLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLY----------SL-DAGA  211 (303)
Q Consensus       154 wd~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~----------~~-~~~~  211 (303)
                      +|+..-          .....+..|...|..++.-|++ ..+-++++||+++-+|+++...-.          .. ..-.
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            998641          2233456788899999999988 678999999999999998743110          00 0113


Q ss_pred             eEEEEEEcCCC-eEE-EEEcCCcEEEEeCCCCceeeeeeec----cccc----cccccCccceeecc----ccceeEEEE
Q 048118          212 VIHALCFSPNR-YWL-CAATEQSIKIWDLESKSIVEDLKVD----LKTE----AEKSEATTATTTIK----KKNIYCTSL  277 (303)
Q Consensus       212 ~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~----~~~~~~~~~  277 (303)
                      ...++..+|.. .+| +++++-..++||.+.-  ++.+.-.    ..++    +-..-........+    .....++-+
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            46788899975 344 5567888999996321  1111110    0000    00000000000011    111235778


Q ss_pred             EEcCCCCEEEEeecCCeEEEEeccc
Q 048118          278 NWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       278 ~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .|+|.|.-|++.-.---|.+||+.+
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecC
Confidence            8999999888877777889998853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.70  E-value=1.3e-15  Score=118.35  Aligned_cols=204  Identities=24%  Similarity=0.383  Sum_probs=145.3

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI-   91 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~-   91 (303)
                      .|-+.|.||-|.|+. +.+++-. |..|.+|++....+...              .+..+.   -.+|+...++-+|+| 
T Consensus       121 eavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~va--------------ev~ss~---s~e~~~~ftsg~WspH  181 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVA--------------EVLSSE---SAEMRHSFTSGAWSPH  181 (370)
T ss_pred             HHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchhe--------------eecccc---cccccceecccccCCC
Confidence            344589999999965 5666655 88999999976543111              111111   112566677888988 


Q ss_pred             -CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCC
Q 048118           92 -DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHT  169 (303)
Q Consensus        92 -~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~  169 (303)
                       ++..+++. .|++++.||++..... ....++|-..+..+.|+|+. +-.+++++.||.|++||.+.. .++.++.+|.
T Consensus       182 Hdgnqv~tt-~d~tl~~~D~RT~~~~-~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs  258 (370)
T KOG1007|consen  182 HDGNQVATT-SDSTLQFWDLRTMKKN-NSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHS  258 (370)
T ss_pred             CccceEEEe-CCCcEEEEEccchhhh-cchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence             56777765 5689999998643221 22235677779999999985 568999999999999999764 4678889999


Q ss_pred             CCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCC---c------------------e--------EEEe-cCCCeEEEEEE
Q 048118          170 GYVNTVAVSPD-GSLCASGGKDGVILLWDLAEG---K------------------R--------LYSL-DAGAVIHALCF  218 (303)
Q Consensus       170 ~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~---~------------------~--------~~~~-~~~~~v~~~~~  218 (303)
                      -.|++++|+|. .+++++++.|..|.+|....-   +                  .        +.++ .....|++++|
T Consensus       259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW  338 (370)
T KOG1007|consen  259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW  338 (370)
T ss_pred             eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence            99999999995 467889999999999976321   0                  1        1111 23567999999


Q ss_pred             cCCCeEEEEE--cCCcEEEEeC
Q 048118          219 SPNRYWLCAA--TEQSIKIWDL  238 (303)
Q Consensus       219 s~~~~~l~~~--~~~~i~iwd~  238 (303)
                      |.-..|+.++  .||++.|=.+
T Consensus       339 SsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  339 SSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccCCCeeEEEeccCceEEeecC
Confidence            9988877554  5888776544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=3.9e-15  Score=130.02  Aligned_cols=193  Identities=16%  Similarity=0.171  Sum_probs=128.5

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE-EeCCCcEEE
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS-ASWDRTVKV  153 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~dg~i~i  153 (303)
                      ..|...+...+|+|+|++++..+.+   ..|.+||+.+.....+.....+   ...++|+|++.  .++. ...+|.+.+
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~I  274 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNI  274 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC--EEEEEEecCCcEEE
Confidence            3466678899999999999887654   3699999865433233322222   33688999873  4554 456787665


Q ss_pred             E--ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118          154 W--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       154 w--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (303)
                      |  |+.+++. ..+..+...+....|+|+|+.|+.++ .++..++|++... .....+....  ....|+|++..++...
T Consensus       275 y~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        275 YVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMIN  351 (429)
T ss_pred             EEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEc
Confidence            5  6655554 44555666788899999999877655 5788888876432 1122222222  4578999998887766


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ...+.+||+.+++... +...                .     ...+..|+|+|++|+.++.+|...+|.+
T Consensus       352 ~~~i~~~Dl~~g~~~~-lt~~----------------~-----~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        352 GDNVVKQDLTSGSTEV-LSST----------------F-----LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCEEEEECCCCCeEE-ecCC----------------C-----CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            6778889998775421 1100                0     0123679999999999999999888875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=4.1e-17  Score=142.75  Aligned_cols=241  Identities=22%  Similarity=0.338  Sum_probs=164.7

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +..+.+|..+|+|+.|+..+ .+++||+.|..++||......     +++                  .+.||++.|+.+
T Consensus       183 ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~-----~lA------------------s~rGhs~ditdl  238 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR-----CLA------------------SCRGHSGDITDL  238 (1113)
T ss_pred             HHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchh-----hhc------------------cCCCCccccchh
Confidence            34588999999999999765 799999999999999864321     111                  356899999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc--------
Q 048118           88 AFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--------  159 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~--------  159 (303)
                      +.+.+..++++++.|..|++|.+.....  +.....|++.|++++|+|-      .+.+.||++++||.+-.        
T Consensus       239 avs~~n~~iaaaS~D~vIrvWrl~~~~p--vsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp  310 (1113)
T KOG0644|consen  239 AVSSNNTMIAAASNDKVIRVWRLPDGAP--VSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRP  310 (1113)
T ss_pred             ccchhhhhhhhcccCceEEEEecCCCch--HHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCC
Confidence            9999999999999999999999864332  3334579999999999994      26688999999997510        


Q ss_pred             ------eeEEEEc----------C------CCCCeeEEEECCCC-----------CEEEEEeCCCeEEEEeCCCCceEEE
Q 048118          160 ------KLRATLA----------G------HTGYVNTVAVSPDG-----------SLCASGGKDGVILLWDLAEGKRLYS  206 (303)
Q Consensus       160 ------~~~~~~~----------~------~~~~i~~~~~~~~~-----------~~l~~~~~d~~v~iwd~~~~~~~~~  206 (303)
                            .+...+.          +      .+-....++|....           .+.+++-.+..+.+|++.+++.++.
T Consensus       311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~  390 (1113)
T KOG0644|consen  311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN  390 (1113)
T ss_pred             CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh
Confidence                  0000000          0      00011112222222           2233444566778888888876654


Q ss_pred             e-cCCCeEEEEEEcCCCeEE--EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          207 L-DAGAVIHALCFSPNRYWL--CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       207 ~-~~~~~v~~~~~s~~~~~l--~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                      . .....++.+.++|-...+  .++.||+..|||+-.+..++.+...                    ......-.||+||
T Consensus       391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--------------------h~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--------------------HGKLVDGKFSQDG  450 (1113)
T ss_pred             hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--------------------cceeeccccCCCC
Confidence            4 234678888999976544  4567999999999877666554321                    0112345688888


Q ss_pred             CEEEEeecCCeEEEEec
Q 048118          284 STLFSGYTDGVIRVWGI  300 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~~  300 (303)
                      ..++....-|-+.+.+.
T Consensus       451 ts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYILGT  467 (1113)
T ss_pred             ceEecCCCCCceEEecc
Confidence            88887777777777654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=9.8e-14  Score=117.46  Aligned_cols=237  Identities=16%  Similarity=0.236  Sum_probs=143.0

Q ss_pred             EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEe-CCCcEEEE
Q 048118           30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSAS-RDRTIKLW  108 (303)
Q Consensus        30 ~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~-~d~~i~vw  108 (303)
                      .+++.+.|+.|.+|++....+ .. ....+                   .+.+....++++|++++|+.++ .++.|.+|
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~-l~-~~~~~-------------------~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~   62 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGA-LT-LLQVV-------------------DVPGQVQPMVISPDKRHLYVGVRPEFRVLSY   62 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCc-ee-eeeEE-------------------ecCCCCccEEECCCCCEEEEEECCCCcEEEE
Confidence            345557789999999953211 00 11111                   1223455789999999876654 57889999


Q ss_pred             ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-e---eEEEEcCCCCCeeEEEECCCCCEE
Q 048118          109 NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-K---LRATLAGHTGYVNTVAVSPDGSLC  184 (303)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l  184 (303)
                      ++....................+.++|++. ..+++...++.|.+|++.+. .   ....+.+ ......++++|+++++
T Consensus        63 ~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l  140 (330)
T PRK11028         63 RIADDGALTFAAESPLPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTL  140 (330)
T ss_pred             EECCCCceEEeeeecCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEE
Confidence            875321111111111122356799999863 23333445899999998642 1   2222222 2346778899999988


Q ss_pred             EEEe-CCCeEEEEeCCCCceEE-------EecCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCC--Cceeeeeeeccc
Q 048118          185 ASGG-KDGVILLWDLAEGKRLY-------SLDAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLES--KSIVEDLKVDLK  252 (303)
Q Consensus       185 ~~~~-~d~~v~iwd~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~--~~~~~~~~~~~~  252 (303)
                      +++. .++.|.+||+.+...+.       ....+...+.++|+|++.++.++.  ++.|.+|+++.  +++.....+...
T Consensus       141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~  220 (330)
T PRK11028        141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM  220 (330)
T ss_pred             EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence            6555 57999999997632221       223345567899999988775553  78999999973  332111111100


Q ss_pred             cccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEecc
Q 048118          253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~  301 (303)
                      +      .     ... ...+...+.++|++++|+++. .++.|.+|+++
T Consensus       221 p------~-----~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        221 P------A-----DFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             C------C-----cCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence            0      0     000 112334688999999988885 47999999984

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=1.8e-13  Score=118.57  Aligned_cols=241  Identities=36%  Similarity=0.601  Sum_probs=168.8

Q ss_pred             ceeeeec-CCCCCcEEEEecC-CCcEEEEEccc-CccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           17 MVTAIAT-PIDNSDMIVTASR-DKSIIVWHLTK-EEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        17 ~v~~v~~-~~~~~~~~~t~s~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      .+..+.. .+....+++..+. |+.+++|+... ...     .                  ..+..|...|..++|+|++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~------------------~~~~~~~~~v~~~~~~~~~  167 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL-----I------------------RTLEGHSESVTSLAFSPDG  167 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-----E------------------EEEecCcccEEEEEECCCC
Confidence            4555555 5554435565555 99999999864 110     0                  1345688889999999999


Q ss_pred             CEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE-EEcCCCCC
Q 048118           94 RQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA-TLAGHTGY  171 (303)
Q Consensus        94 ~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~  171 (303)
                      ..+++++. |+.+++|+......  ......|...+.+++|+|++. ..+++++.|+.|++||...+.... .+..|...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             CEEEecCCCCCceEEEEcCCCce--EEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence            98888885 99999999864222  222234778899999998753 245555999999999988777666 67888776


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEEe-cCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceeeeee
Q 048118          172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYSL-DAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      . ...|+|++..+++++.|+.+++|+++.... +... .....+.++.|+|++ .+++.+.++.+.+||.+.........
T Consensus       245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            5 448999998889999999999999986654 3333 335788999999965 44455567789999988776554332


Q ss_pred             eccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEeccc
Q 048118          249 VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGIGR  302 (303)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~~~  302 (303)
                                        ...+...+..+.|.+++..++.+ ..|+.+.+|++..
T Consensus       324 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         324 ------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             ------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence                              00111134566773343556655 7889999998753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.2e-15  Score=124.06  Aligned_cols=194  Identities=22%  Similarity=0.337  Sum_probs=135.5

Q ss_pred             eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118           19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS   98 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t   98 (303)
                      ..++|+.++ ..++||+.||++|+|+...+....                       ....|.++|.++.|+|||+.|++
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l-----------------------~e~~~~~eV~DL~FS~dgk~las  203 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL-----------------------EEIAHHAEVKDLDFSPDGKFLAS  203 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhh-----------------------hhHhhcCccccceeCCCCcEEEE
Confidence            467788765 589999999999999976543221                       23468899999999999999999


Q ss_pred             EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC--EEEE-EeCCCcEEEEECCCce------eEEEEcCCC
Q 048118           99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP--TIVS-ASWDRTVKVWNLSNCK------LRATLAGHT  169 (303)
Q Consensus        99 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~-~~~dg~i~iwd~~~~~------~~~~~~~~~  169 (303)
                      .+.| ..+||+........-......+.....+.|+.+..+.  ++++ ...-+.|+.||+....      ..+.+. ..
T Consensus       204 ig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~  281 (398)
T KOG0771|consen  204 IGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RF  281 (398)
T ss_pred             ecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-cc
Confidence            9999 8999998654221111111223345667787765332  2222 2334567777664321      112222 24


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeC
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWL-CAATEQSIKIWDL  238 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~  238 (303)
                      ..|++++.+++|++++.|+.||.|-|++..+-+.++-++  +...|+.+.|+|+...+ .++++..+.+.-+
T Consensus       282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            579999999999999999999999999998888776654  35689999999997555 4556777766654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=3.3e-15  Score=116.28  Aligned_cols=202  Identities=16%  Similarity=0.321  Sum_probs=148.0

Q ss_pred             cccCCEEEEEEeeCC-----CEEEEEeCCCcEEEEecCCceeee-e------ecCCCCccceEEEEEcCCCCCCEEEEEe
Q 048118           79 GHTKDVLSVAFSIDN-----RQIVSASRDRTIKLWNTLGECKYT-I------QEGDAHTEWVSCVRFSPNTLQPTIVSAS  146 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~-----~~l~t~~~d~~i~vw~~~~~~~~~-~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~  146 (303)
                      .|.-+++.+-|.|+.     .+|||++  ..+|+|.+..+.... .      .....+..++++..|+.-. ..++.+.+
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence            477788999999876     3566655  469999875321110 0      0112244577888887533 45788999


Q ss_pred             CCCcEEEEECCCce---eEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCc---eEEEecC-CCeEEEEEE
Q 048118          147 WDRTVKVWNLSNCK---LRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGK---RLYSLDA-GAVIHALCF  218 (303)
Q Consensus       147 ~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~---~~~~~~~-~~~v~~~~~  218 (303)
                      -|-+..|||+.++.   ....+..|..+|..++|...+ +.||+.+.||.||++|++..+   .++.-.. ..+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999998763   467788899999999999855 488999999999999998754   3333333 456667888


Q ss_pred             cCCC-eEEEE-E-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCe
Q 048118          219 SPNR-YWLCA-A-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGV  294 (303)
Q Consensus       219 s~~~-~~l~~-~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~  294 (303)
                      ++.. .++|. . ....|.+.|+|..                   .++...+++|...++.++|.|.. ..|++++.|--
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P-------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVP-------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCC-------------------CcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence            8865 34443 2 3457888888643                   23455678888899999999975 58999999999


Q ss_pred             EEEEeccc
Q 048118          295 IRVWGIGR  302 (303)
Q Consensus       295 v~~w~~~~  302 (303)
                      +.+||++.
T Consensus       312 aliWDl~q  319 (364)
T KOG0290|consen  312 ALIWDLQQ  319 (364)
T ss_pred             EEEEeccc
Confidence            99999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=2e-15  Score=126.49  Aligned_cols=165  Identities=21%  Similarity=0.367  Sum_probs=128.0

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC-----------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG-----------   75 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------   75 (303)
                      |.+...+|.++|.+-.|+|++. -|+|+|+||.|++|...      +..+..+.....+|+++.|.|+.           
T Consensus        96 VE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrs------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~  168 (737)
T KOG1524|consen   96 VERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRS------GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI  168 (737)
T ss_pred             hhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEecc------chHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence            3455789999999999999876 58999999999999754      34445555566778888888764           


Q ss_pred             ------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           76 ------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        76 ------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                  ++++|.+-|.+++|++...++++|+.|-.-++||..+...+..   .+|..+|++++|+|+.   .++
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S---~~~ey~ITSva~npd~---~~~  242 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS---AAEEYAITSVAFNPEK---DYL  242 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC---Chhccceeeeeecccc---cee
Confidence                        3569999999999999999999999999999999876554432   3677889999999983   344


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEE
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW  196 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw  196 (303)
                      .++. .+.|   +        -....+.|..++|||||..++.|+..|.+.+=
T Consensus       243 v~S~-nt~R---~--------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  243 LWSY-NTAR---F--------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeee-eeee---e--------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            4432 2222   1        12235789999999999999999988887653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.7e-15  Score=122.08  Aligned_cols=192  Identities=24%  Similarity=0.284  Sum_probs=139.1

Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      ..++|+++|..+++++.||.+|+|+......  +.....|...|.++.|+|++  ..+++.+.| ..++|+.+++.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEEeccCchhhh
Confidence            5789999999999999999999999543222  22234567789999999997  468888888 999999988855443


Q ss_pred             Ec--CCCCCeeEEEECCCC-----CEEEEEeCCCeEEEEeCCCCc-----eEEE-ecCCCeEEEEEEcCCCeEEEEEc-C
Q 048118          165 LA--GHTGYVNTVAVSPDG-----SLCASGGKDGVILLWDLAEGK-----RLYS-LDAGAVIHALCFSPNRYWLCAAT-E  230 (303)
Q Consensus       165 ~~--~~~~~i~~~~~~~~~-----~~l~~~~~d~~v~iwd~~~~~-----~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~  230 (303)
                      ..  .-......+.|+.++     ..++....-+.|+.||+..-.     +..+ +.....+.+++.+++|.+++.++ +
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            32  122345567787766     233444456677777763211     1111 12245799999999999888765 8


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      |.|.+++..+-+.+.-.                   -+.|...++.+.|+||.+++++-+.|...++..+
T Consensus       303 GsVai~~~~~lq~~~~v-------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYV-------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceeeeeEee-------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            99999998765554322                   2456778999999999999999999999988766

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6.8e-14  Score=123.48  Aligned_cols=167  Identities=20%  Similarity=0.303  Sum_probs=124.2

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC--ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      -|+-.+++.+++|++.+++++..||.|.+|.-.+  ..........=|...|.++.|++++  .++++|+.++.+.+|.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC--ceEeecccceEEEEEee
Confidence            4566789999999999999999999999997533  2222222222256779999999987  57999999999999999


Q ss_pred             CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec------------CCCeEEEEEEcCC-Ce
Q 048118          157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD------------AGAVIHALCFSPN-RY  223 (303)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------------~~~~v~~~~~s~~-~~  223 (303)
                      .+++ .+-+.--.++|..+.++||+.+.+....|.+|.+....+.+...+++            .......++++|. +.
T Consensus       281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            8877 33344446789999999999999999999999998775543322221            1234556788883 55


Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeee
Q 048118          224 WLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       224 ~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      .+..+..+.|.+||+-+.+.+.++.
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEE
Confidence            5566778899999987766665543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=6.4e-13  Score=106.82  Aligned_cols=156  Identities=25%  Similarity=0.448  Sum_probs=116.0

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEE--EeCCCcEEEEECCC
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVS--ASWDRTVKVWNLSN  158 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~dg~i~iwd~~~  158 (303)
                      .+|.++.++.  ++|+.+-.+. |.|||+...... ++....++...+.+  ++|+....+++.  ....|.|.+||..+
T Consensus        88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~A--lS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCA--LSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEe--eccCCCCceEEecCCCCCceEEEEEccc
Confidence            4666777654  4677666654 999998653221 12222223333444  445433345554  33468999999999


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCe-EEEEeCCCCceEEEecCC---CeEEEEEEcCCCeEEEEE-cCCcE
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV-ILLWDLAEGKRLYSLDAG---AVIHALCFSPNRYWLCAA-TEQSI  233 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~-~~~~i  233 (303)
                      -+....+..|.+.+-+++|+|+|.+||++|+.|+ |||+.+.+|+.++.+..+   ..|++++|+|++++|+++ ..+.|
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            9999999999999999999999999999999885 589999999999998654   468999999999888765 46899


Q ss_pred             EEEeCCCCc
Q 048118          234 KIWDLESKS  242 (303)
Q Consensus       234 ~iwd~~~~~  242 (303)
                      ++|.++...
T Consensus       243 HiFKL~~~~  251 (391)
T KOG2110|consen  243 HIFKLEKVS  251 (391)
T ss_pred             EEEEecccc
Confidence            999987544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.7e-15  Score=127.33  Aligned_cols=184  Identities=23%  Similarity=0.374  Sum_probs=137.3

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      +=+-++++|.++|.|+++++. .+.+.+|+-||+|+.|++....-.       ...+...      .-.+.+.||++.|+
T Consensus       335 epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~dp-------~ds~dp~------vl~~~l~Ghtdavw  400 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQDP-------DDSYDPS------VLSGTLLGHTDAVW  400 (577)
T ss_pred             eeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCCc-------ccccCcc------hhccceecccccee
Confidence            334579999999999999876 468999999999999987632100       0000000      01357889999999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeee----------------------------------------cCC-
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQ----------------------------------------EGD-  122 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~----------------------------------------~~~-  122 (303)
                      .+++++...+|++|+.||++++|+......  +...                                        ... 
T Consensus       401 ~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s  480 (577)
T KOG0642|consen  401 LLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES  480 (577)
T ss_pred             eeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc
Confidence            999999999999999999999998532211  0000                                        000 


Q ss_pred             ------CCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEE
Q 048118          123 ------AHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW  196 (303)
Q Consensus       123 ------~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw  196 (303)
                            .....+.-+.++|+.  ...+++-.|+.|+++|..++++......|...++++++.|+|.+|++++.|+.+++|
T Consensus       481 ~~~~~~~~~~~in~vVs~~~~--~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~  558 (577)
T KOG0642|consen  481 SASPGPRRYPQINKVVSHPTA--DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLW  558 (577)
T ss_pred             cCCCcccccCccceEEecCCC--CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehh
Confidence                  001123345566654  467888899999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceEE
Q 048118          197 DLAEGKRLY  205 (303)
Q Consensus       197 d~~~~~~~~  205 (303)
                      .+...+++.
T Consensus       559 kld~k~~~~  567 (577)
T KOG0642|consen  559 KLDVKTCVL  567 (577)
T ss_pred             hccchheee
Confidence            987665543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=2e-14  Score=113.29  Aligned_cols=214  Identities=16%  Similarity=0.214  Sum_probs=155.8

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC-CC
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SN  158 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~-~~  158 (303)
                      ..+|+|.+|++++..+|.+-+.+.|.||...+.. .........|...|++++|+|..  +.|++++.|..-++|.. .+
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s--nrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS--NRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC--CceeEccCCCCccccccCCC
Confidence            4689999999999999999999999999865543 22333445678889999999975  67999999999999988 44


Q ss_pred             ce--eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE-----EEecCCCeEEEEEEcCCCeEEE-EEcC
Q 048118          159 CK--LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL-----YSLDAGAVIHALCFSPNRYWLC-AATE  230 (303)
Q Consensus       159 ~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~-~~~~  230 (303)
                      ++  ..-.+..++..++++.|+|.++.|++|+.-+.|.||=++..+.-     ...+..+.|.++.|+|+.-+++ ++.|
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            43  33445567889999999999999999999999999987655432     1224467899999999987665 4569


Q ss_pred             CcEEEEeCCCCceeeeeeecccccc--ccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEA--EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ++.++|..    .++.+.....+..  ...+......+......++..+.|+|+|..|+=-+.|.++.+=|-
T Consensus       168 ~k~rVfSa----yIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  168 GKCRVFSA----YIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             cceeEEEE----eeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            99999864    1222211111000  011111122233344567889999999999999999999877654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.4e-13  Score=103.56  Aligned_cols=208  Identities=18%  Similarity=0.236  Sum_probs=145.9

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      ..++|..+|+.+.|.   +++|++|+. |.|+-|..+..++......         ..++. .|...-...--+|+++-.
T Consensus        57 ~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~W~E~~es~~~K~---------lwe~~-~P~~~~~~evPeINam~l  122 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWEWNEEEESLATKR---------LWEVK-IPMQVDAVEVPEINAMWL  122 (325)
T ss_pred             eccccCCCeeeeeee---hhheeeccC-ceEEEeeehhhhhhccchh---------hhhhc-CccccCcccCCccceeEe
Confidence            568999999999997   456777665 9999998876543211110         00000 000000012236889999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      .|...-+++++.|+.+.-||+......  ...++|++.+.++.--..  ...+++|+.||++|+||.++++.++.+....
T Consensus       123 dP~enSi~~AgGD~~~y~~dlE~G~i~--r~~rGHtDYvH~vv~R~~--~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  123 DPSENSILFAGGDGVIYQVDLEDGRIQ--REYRGHTDYVHSVVGRNA--NGQILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             ccCCCcEEEecCCeEEEEEEecCCEEE--EEEcCCcceeeeeeeccc--CcceeecCCCccEEEEeccccceeEEecccc
Confidence            988777777779999999998764332  234689999999976322  2468999999999999999999877664321


Q ss_pred             ----------CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          170 ----------GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       170 ----------~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                                ..|.+++.+  ...+++| ....+.+|.++..++...++...++..+.|- +..+++++..+.+.-|.+.
T Consensus       199 ~~~~lRp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~-~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  199 NPNLLRPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFV-DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ChhhcCcccCceeEEEecc--CceEEec-CCCceeEEeccCCCceEEEecccceeEeeee-cceEEEeccccceeeeeec
Confidence                      235555554  4466555 4568999999999999999888999999986 5677777878888888774

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.7e-15  Score=125.21  Aligned_cols=222  Identities=23%  Similarity=0.299  Sum_probs=152.5

Q ss_pred             CccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecc
Q 048118            1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH   80 (303)
Q Consensus         1 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h   80 (303)
                      |.++|.+...|.||.+=|+++.|+.+ +.+|++||.|-.+.|||.-...+     +..                 --+||
T Consensus        36 ~lrrL~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~Kl-----lhs-----------------I~TgH   92 (758)
T KOG1310|consen   36 WLRRLDLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKL-----LHS-----------------ISTGH   92 (758)
T ss_pred             HHhhcchhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcce-----eee-----------------eeccc
Confidence            45788899999999999999999976 47999999999999998742110     000                 12589


Q ss_pred             cCCEEEEEEeeC--CCEEEEEeCCCcEEEEecCCc--------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           81 TKDVLSVAFSID--NRQIVSASRDRTIKLWNTLGE--------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        81 ~~~i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      ++.|.++.|-|.  .+++++|..|+.|+++|+...        ...+......|...|.-++.-|++ ...+-+++.||.
T Consensus        93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGt  171 (758)
T KOG1310|consen   93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGT  171 (758)
T ss_pred             ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcc
Confidence            999999999984  578999999999999998531        111112223455556667777765 347889999999


Q ss_pred             EEEEECCCce-eEEE---------EcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCc-----------------
Q 048118          151 VKVWNLSNCK-LRAT---------LAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGK-----------------  202 (303)
Q Consensus       151 i~iwd~~~~~-~~~~---------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-----------------  202 (303)
                      |+=||++... +...         +...--...++.++|.. .+|++|+.|--.++||.+...                 
T Consensus       172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~  251 (758)
T KOG1310|consen  172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDC  251 (758)
T ss_pred             eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCccc
Confidence            9999997521 1111         11112346788999955 578999999999999953211                 


Q ss_pred             -eEEEecC-------C---C---eEEEEEEcCCCeE-EEEEcCCcEEEEeCCCCceeee
Q 048118          203 -RLYSLDA-------G---A---VIHALCFSPNRYW-LCAATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       203 -~~~~~~~-------~---~---~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~  246 (303)
                       ++.-+..       +   .   .++-+.|+|+|.- |+.-....|+++|+..++-...
T Consensus       252 ~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  252 RCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             chhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence             1111110       0   0   1445789999854 4444566899999987665433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4.8e-15  Score=117.68  Aligned_cols=143  Identities=19%  Similarity=0.348  Sum_probs=112.2

Q ss_pred             CEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeE
Q 048118          140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVI  213 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v  213 (303)
                      ..++++..+|+|++||..+++....++++...++.++|..  ....+.+++.||+|++||+|.......+.    .+.+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688999999999999999999999999999999999876  34578999999999999999766544332    23466


Q ss_pred             EEEEEcCCCeEEEEEc-----CCcEEEEeCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EE
Q 048118          214 HALCFSPNRYWLCAAT-----EQSIKIWDLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TL  286 (303)
Q Consensus       214 ~~~~~s~~~~~l~~~~-----~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l  286 (303)
                      .+++.+..+.++++++     +-.+.+||+|..+. +..+.                   ..|.--++.+.|+|..+ +|
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-------------------eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-------------------ESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-------------------hhccCcceeEEecCCCCCeE
Confidence            7777766777787764     45799999997665 33221                   22344568899999765 89


Q ss_pred             EEeecCCeEEEEecc
Q 048118          287 FSGYTDGVIRVWGIG  301 (303)
Q Consensus       287 ~~gs~Dg~v~~w~~~  301 (303)
                      ++||.||.|.+||+.
T Consensus       182 lSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTK  196 (376)
T ss_pred             EeecccceEEeeecC
Confidence            999999999999974

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=7.2e-14  Score=108.26  Aligned_cols=108  Identities=26%  Similarity=0.527  Sum_probs=84.3

Q ss_pred             CCCeeEEEECCCCCEEEEE--eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc----CCcEEEEeCCCCc
Q 048118          169 TGYVNTVAVSPDGSLCASG--GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT----EQSIKIWDLESKS  242 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~~  242 (303)
                      .++|.+++|+|+|+.|++.  ..++.|.+||++ ++.+..+. ...++.+.|+|+|.+++.+.    .|.|.+||.++.+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            4579999999999987554  357799999996 66777765 45678899999998777653    4679999999776


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec------CCeEEEEec
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT------DGVIRVWGI  300 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~------Dg~v~~w~~  300 (303)
                      .+....                      ...++.++|+|+|++|+++..      |+.+++|+.
T Consensus       137 ~i~~~~----------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  137 KISTFE----------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             Eeeccc----------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            654332                      112467999999999998875      788999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=1.1e-13  Score=107.29  Aligned_cols=117  Identities=23%  Similarity=0.424  Sum_probs=89.7

Q ss_pred             ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCC
Q 048118          125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEG  201 (303)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~  201 (303)
                      ..+|.+++|+|++....++.|..++.|.+||++ .+....+.  ...+..+.|+|+|++|++++.   .|.+.+||.++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            345999999999754445556677899999996 44455553  467789999999999998874   467999999988


Q ss_pred             ceEEEecCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCCCceeee
Q 048118          202 KRLYSLDAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLESKSIVED  246 (303)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~~~~~~~  246 (303)
                      +.+.+..... +..++|+|+|.+++++.       |+.++||+.. |+++.+
T Consensus       136 ~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  136 KKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            8887776544 67899999998776542       6789999985 444443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.5e-14  Score=114.93  Aligned_cols=164  Identities=15%  Similarity=0.168  Sum_probs=128.7

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC----ceeeee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG----ECKYTI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~----~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      .+.+|.+-|+++.|+.++++|++|+.|..+++|....    ..-+.+ .....|...|.|+.|+...  ..+.+|+.++.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCcce
Confidence            3568999999999999999999999999999998521    111122 2345676789999998754  47889999999


Q ss_pred             EEEEECCCceeEEEEcCC--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc----eEEEecCCCeEEEEEEcCCC--
Q 048118          151 VKVWNLSNCKLRATLAGH--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK----RLYSLDAGAVIHALCFSPNR--  222 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~s~~~--  222 (303)
                      |...|+.+.+.+..+...  .+.|..+..+|..+.|++.+.++.|.+||.+..+    ++..-..+...+++-|+|..  
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            999999988877665532  3589999999999999999999999999998765    22223456678899999985  


Q ss_pred             eEEEEEcCCcEEEEeCCCC
Q 048118          223 YWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       223 ~~l~~~~~~~i~iwd~~~~  241 (303)
                      .+++....+-+.+||.+..
T Consensus       209 Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eEEeccccCCCCceeeccc
Confidence            3444556788999998754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.62  E-value=1.2e-13  Score=108.90  Aligned_cols=208  Identities=18%  Similarity=0.251  Sum_probs=151.3

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ++--.++|+|-+|+++. ..+|.+-+...+-||.......                    +.+-..+..|...|++++|+
T Consensus         6 ~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd~~vtgvdWa   64 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHDKIVTGVDWA   64 (361)
T ss_pred             eeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhCcceeEEeec
Confidence            34445789999999875 5789998888999997653220                    01112345688899999999


Q ss_pred             eCCCEEEEEeCCCcEEEEec-CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE----EEE
Q 048118           91 IDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR----ATL  165 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~----~~~  165 (303)
                      |....|++|+.|..-.||.. .+...........++....++.|+|..  +.|++|+....|.+|-++...--    ..-
T Consensus        65 p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhik  142 (361)
T KOG1523|consen   65 PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIK  142 (361)
T ss_pred             CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhC
Confidence            99999999999999999987 333222222223467778999999974  68999999999999877543311    111


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC-----CCC-------------ceEEEe-cCCCeEEEEEEcCCCeEEE
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL-----AEG-------------KRLYSL-DAGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~-----~~~-------------~~~~~~-~~~~~v~~~~~s~~~~~l~  226 (303)
                      +.+...|+++.|+|++-+|+.|+.|+.++|+..     .+.             +....+ ..+..++.+.|+|+|..|+
T Consensus       143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la  222 (361)
T KOG1523|consen  143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA  222 (361)
T ss_pred             CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence            234578999999999999999999999999964     111             111222 3456899999999997665


Q ss_pred             -EEcCCcEEEEeCCCC
Q 048118          227 -AATEQSIKIWDLESK  241 (303)
Q Consensus       227 -~~~~~~i~iwd~~~~  241 (303)
                       ++.|..+.+=|....
T Consensus       223 wv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  223 WVGHDSTVSFVDAAGP  238 (361)
T ss_pred             EecCCCceEEeecCCC
Confidence             567888988876554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=1.5e-15  Score=133.10  Aligned_cols=116  Identities=30%  Similarity=0.546  Sum_probs=99.6

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ++.+|...|+|+.|...|.+++||+.|..++||....  ........+|...|+.++.+.+.  ..+++++.|..|++|.
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~ditdlavs~~n--~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASCRGHSGDITDLAVSSNN--TMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccc--hhhhccCCCCccccchhccchhh--hhhhhcccCceEEEEe
Confidence            3569999999999999999999999999999998533  22334446788889888877653  4678899999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA  199 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~  199 (303)
                      +.++.++..+.+|++.|++++|+|-.    +.+.||++++||.+
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            99999999999999999999999953    77899999999987

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=7.2e-13  Score=119.37  Aligned_cols=245  Identities=15%  Similarity=0.223  Sum_probs=154.7

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee--CCCE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI--DNRQ   95 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~   95 (303)
                      -..+.++|.. ..++++.....|++||..+.....+     +....               .....|..+.+-.  +..+
T Consensus      1067 pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~-----F~n~~---------------~~~t~Vs~l~liNe~D~aL 1125 (1387)
T KOG1517|consen 1067 PKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNG-----FDNGA---------------FPDTRVSDLELINEQDDAL 1125 (1387)
T ss_pred             CceeeecCCC-ceeEEcCCcceEEEEecccCceecc-----ccCCC---------------CCCCccceeeeecccchhh
Confidence            3456677765 4677777667999999876543211     11110               1223566777654  4568


Q ss_pred             EEEEeCCCcEEEEecCC----ceeeee-----ecCCCC-ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           96 IVSASRDRTIKLWNTLG----ECKYTI-----QEGDAH-TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~----~~~~~~-----~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      +++|+.||.||||+--.    ..+...     ...... .+.-.-+.|....  ..++++|.-..|+|||....+....+
T Consensus      1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~--G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS--GHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC--CeEEecCCeeEEEEEecccceeEeec
Confidence            99999999999997421    111110     000000 1111234565543  45777777899999999887766665


Q ss_pred             cC-CCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCce---EEEe-cCC--CeEEEEEEcCCC--eEEEEEcCCcEEE
Q 048118          166 AG-HTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKR---LYSL-DAG--AVIHALCFSPNR--YWLCAATEQSIKI  235 (303)
Q Consensus       166 ~~-~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-~~~--~~v~~~~~s~~~--~~l~~~~~~~i~i  235 (303)
                      .. ....++++.-+. .|..++.|..||.|++||.+...+   +... .+.  .+|..+.+.+.|  .++.++.+|.|++
T Consensus      1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence            43 334567775543 568999999999999999875432   2222 222  237888888864  5778889999999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ||++.......+.+.  ...             .-+...+++..++..+.+|+|+. +.+.+|+++
T Consensus      1284 ~DlR~~~~e~~~~iv--~~~-------------~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIV--AHW-------------EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             EecccCcccccceee--ecc-------------ccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence            999875222111110  000             00112467888999999999999 999999974

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.9e-13  Score=113.79  Aligned_cols=265  Identities=16%  Similarity=0.229  Sum_probs=172.7

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC--------
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------   74 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------   74 (303)
                      ++++++..+. |..+-+.|..+|++.=.+|||-.--.|++||++....++...   +  ....|....++.+        
T Consensus        40 ~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh---l--Dae~V~feiLsDD~SK~v~L~  113 (703)
T KOG2321|consen   40 QRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH---L--DAEVVDFEILSDDYSKSVFLQ  113 (703)
T ss_pred             HHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec---c--cccceeEEEeccchhhheEee
Confidence            4567777776 667888999999876666777778899999998654332111   1  1112222222222        


Q ss_pred             --CceecccC-------CE----EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118           75 --GQFVGHTK-------DV----LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT  141 (303)
Q Consensus        75 --~~~~~h~~-------~i----~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  141 (303)
                        ....-|..       .|    ..++++....=|+.++....|.-.++.....  +.........++++..++.  +.+
T Consensus       114 ~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~--hgL  189 (703)
T KOG2321|consen  114 NDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEE--HGL  189 (703)
T ss_pred             cCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc--ccccccccccceeeeecCc--cce
Confidence              11111211       12    2455554443344444444444445432221  2222334466888988875  457


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEc------CCCC-----CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLA------GHTG-----YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-  209 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-  209 (303)
                      +++|+.+|.|.+||.+.......+.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|+|+++.+++..-.+ 
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~  269 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG  269 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence            8889999999999998765444332      2333     499999999999999999999999999999988766544 


Q ss_pred             -CCeEEEEEEcCC--CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118          210 -GAVIHALCFSPN--RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL  286 (303)
Q Consensus       210 -~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  286 (303)
                       ..+|..+.|.+.  +..+++.....++|||-.+++....+...                     ..++.+++-|++.++
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---------------------~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---------------------SDLNDFCFVPGSGMF  328 (703)
T ss_pred             CccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---------------------CCcCceeeecCCceE
Confidence             467888999765  34566666678999999888765443210                     113567788999999


Q ss_pred             EEeecCCeEEEE
Q 048118          287 FSGYTDGVIRVW  298 (303)
Q Consensus       287 ~~gs~Dg~v~~w  298 (303)
                      ++|..++.+..|
T Consensus       329 f~Ane~~~m~~y  340 (703)
T KOG2321|consen  329 FTANESSKMHTY  340 (703)
T ss_pred             EEecCCCcceeE
Confidence            999998887665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=1.2e-13  Score=115.92  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=113.7

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcc-e----EEEEeCCCCceecccCCEEEEEEe
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHF-V----QDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-i----~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..|+++.|-|.++..|+.+-.+|.+.+++..-...........+..-..+ |    +...-+|-.++.--++.|+..+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            57999999998889999999999999997632111110000000000000 0    000002233444456689999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      |||++||+.+.||.+|||+........+  .+..-....|++|+|++  .++++|+.|.-|.+|.+...+.+..=++|+.
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~--mkSYFGGLLCvcWSPDG--KyIvtGGEDDLVtVwSf~erRVVARGqGHkS  375 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGV--MKSYFGGLLCVCWSPDG--KYIVTGGEDDLVTVWSFEERRVVARGQGHKS  375 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHH--HHhhccceEEEEEcCCc--cEEEecCCcceEEEEEeccceEEEecccccc
Confidence            9999999999999999999865433221  12234568999999997  5899999999999999999888888889999


Q ss_pred             CeeEEEEC
Q 048118          171 YVNTVAVS  178 (303)
Q Consensus       171 ~i~~~~~~  178 (303)
                      .|+.++|.
T Consensus       376 WVs~VaFD  383 (636)
T KOG2394|consen  376 WVSVVAFD  383 (636)
T ss_pred             ceeeEeec
Confidence            99999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=9e-14  Score=115.35  Aligned_cols=266  Identities=19%  Similarity=0.250  Sum_probs=176.0

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD   83 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~   83 (303)
                      ++.+-..|..|.+-|+.|.|+.. +..+++||.|..+.+||......+...                      --+|...
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f----------------------~SGH~~N  187 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSF----------------------ESGHCNN  187 (559)
T ss_pred             HhhhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCccccc----------------------ccccccc
Confidence            45566679999999999999966 468999999999999998654322111                      1257777


Q ss_pred             EEEEEEeeC--CCEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           84 VLSVAFSID--NRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        84 i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      |....|-|.  ...+++++.||.+++=.+.. ...........|.+.|.-++.-|... ..|.+++.|+.+.-+|++...
T Consensus       188 vfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~  266 (559)
T KOG1334|consen  188 VFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDV  266 (559)
T ss_pred             hhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCC
Confidence            777778775  35799999999999866421 11111223345778888888888753 468899999999999998765


Q ss_pred             eEEEEc---CCCC---CeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCce------EEEe-------cCCCeEEEEEEcC
Q 048118          161 LRATLA---GHTG---YVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKR------LYSL-------DAGAVIHALCFSP  220 (303)
Q Consensus       161 ~~~~~~---~~~~---~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~------~~~~-------~~~~~v~~~~~s~  220 (303)
                      ....+.   .+..   ....++..|.. ..+++++.|..+++||.+.-..      +.++       .....|++++|+.
T Consensus       267 pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  267 PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH  346 (559)
T ss_pred             ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence            433322   2222   46788899955 4899999999999999865321      1222       1234688999995


Q ss_pred             C-CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccc--eeEEEEE-EcCCCCEEEEeecCCeEE
Q 048118          221 N-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKN--IYCTSLN-WSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       221 ~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~sp~~~~l~~gs~Dg~v~  296 (303)
                      + +.++++-.|-.|++++-..+.- .+. ....+.   ....  ....++|.  ..+..+. |-|...|+++||.-|.|.
T Consensus       347 ~~sElLaSYnDe~IYLF~~~~~~G-~~p-~~~s~~---~~~~--k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  347 DGSELLASYNDEDIYLFNKSMGDG-SEP-DPSSPR---EQYV--KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             CccceeeeecccceEEeccccccC-CCC-CCCcch---hhcc--chhhcccccccccceeeeccCccceEEecCccceEE
Confidence            5 5788888999999995432211 000 000000   0000  00011111  1123334 578889999999999999


Q ss_pred             EEec
Q 048118          297 VWGI  300 (303)
Q Consensus       297 ~w~~  300 (303)
                      +|+-
T Consensus       420 iW~K  423 (559)
T KOG1334|consen  420 IWDK  423 (559)
T ss_pred             EEec
Confidence            9984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.1e-11  Score=108.33  Aligned_cols=194  Identities=13%  Similarity=0.132  Sum_probs=121.6

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeC---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEEE
Q 048118           80 HTKDVLSVAFSIDNRQIVSASR---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKVW  154 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~iw  154 (303)
                      +...+...+|+|+|+.|+..+.   +..|.+|++.+.....+.....   ......|+|++.. .+++.+.+|  .|++|
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG~~-La~~~~~~g~~~I~~~  272 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSK-LAFALSKTGSLNLYVM  272 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCCCE-EEEEEcCCCCcEEEEE
Confidence            4556788999999998876542   3468888876543322222222   2345789999742 333334444  48889


Q ss_pred             ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC-C--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-C
Q 048118          155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD-G--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-E  230 (303)
Q Consensus       155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~  230 (303)
                      |+.+++... +..+...+....|+|+|+.|+..+.+ +  .|.++|+.+++..............+|+|+|..++... +
T Consensus       273 d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        273 DLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             ECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence            998876544 33344567889999999988777654 4  45555766654322222233455688999987765542 2


Q ss_pred             ---CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe---EEEEec
Q 048118          231 ---QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV---IRVWGI  300 (303)
Q Consensus       231 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~---v~~w~~  300 (303)
                         ..|++||+++++.. .+...                     ....+..|+|||++|+.++.|+.   +.++++
T Consensus       352 ~g~~~I~~~dl~~g~~~-~Lt~~---------------------~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        352 GGQQHIAKQDLATGGVQ-VLTDT---------------------FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CCCceEEEEECCCCCeE-EeCCC---------------------CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence               35889998876532 11100                     00123569999999998888875   555554

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=2.9e-12  Score=103.81  Aligned_cols=244  Identities=13%  Similarity=0.179  Sum_probs=156.3

Q ss_pred             cceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           16 DMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        16 ~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      +.|+.++|..+ ..+.++.++.|..+..+.+...+-....            .++     .....-+++|..+...  ..
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~------------~~~-----~~~~l~~~~I~gl~~~--dg  116 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL------------DDA-----KTVSLGTKSIKGLKLA--DG  116 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccccc------------ccc-----cccccccccccchhhc--CC
Confidence            34555555442 2356666667777777766543211100            000     0112234455555433  34


Q ss_pred             EEEEEeCCCcEEEEecCCc-----eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC--CcEEEEECCCceeEEEEcC
Q 048118           95 QIVSASRDRTIKLWNTLGE-----CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD--RTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~  167 (303)
                      .|++|-.+|.+.+|.....     ........    ..+..+.-++.. ...+++|+..  ..+.+||++..+.+.+-+.
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeecC----CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccC
Confidence            7888999999999986521     11111111    123344444432 3456678888  8899999987643332221


Q ss_pred             CC---------CCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCC-ceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcE
Q 048118          168 HT---------GYVNTVAVSPD--GSLCASGGKDGVILLWDLAEG-KRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSI  233 (303)
Q Consensus       168 ~~---------~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i  233 (303)
                      -.         -.++++.|-|.  ...|++++.-+++++||.+.+ +++..+.. ..++.++...|++.++.++ +-+.+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence            11         13567888776  789999999999999999854 46666653 6789999999998766554 57899


Q ss_pred             EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ..||++.+++....                   +++....+.++.-+|.+++|++++-|..||++|+.+
T Consensus       272 ~~FD~r~~kl~g~~-------------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCG-------------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             heecccCceeeccc-------------------cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            99999998876531                   222333456788899999999999999999999854

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.4e-11  Score=99.16  Aligned_cols=253  Identities=19%  Similarity=0.250  Sum_probs=151.1

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..|++++|.|-+..-|+.|.. +-|+||........ ...++-...+..-|        .+..+| .+|++++|+++|..
T Consensus       141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~-~r~~~~~s~~~~qv--------l~~pgh-~pVtsmqwn~dgt~  209 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA-NRNIRMMSTHHLQV--------LQDPGH-NPVTSMQWNEDGTI  209 (445)
T ss_pred             cceeEEEeccCCcceeeeeec-ceeEEEEcCccccc-ccccccccccchhh--------eeCCCC-ceeeEEEEcCCCCE
Confidence            568999999976655666655 56999976532111 11111111111111        123345 58999999999999


Q ss_pred             EEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118           96 IVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT  174 (303)
Q Consensus        96 l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  174 (303)
                      +++++. |..|+|||........+.  ...-..+.-++|+|++  .+++++..|+..++|............-..+.|..
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT  285 (445)
T ss_pred             EeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceee
Confidence            998875 568999998654433332  1234557789999997  47888999999999976543222222233568999


Q ss_pred             EEECCCCCEEEEE-eCCCeEEEEeCCCCc----------e---EEEe-----c-----CCCeEEEEEEcCCCeEEEEEcC
Q 048118          175 VAVSPDGSLCASG-GKDGVILLWDLAEGK----------R---LYSL-----D-----AGAVIHALCFSPNRYWLCAATE  230 (303)
Q Consensus       175 ~~~~~~~~~l~~~-~~d~~v~iwd~~~~~----------~---~~~~-----~-----~~~~v~~~~~s~~~~~l~~~~~  230 (303)
                      ..|+|+|+.|+.+ +..-+++-..+....          .   +..+     .     ......+++|.|.|.+|++..-
T Consensus       286 acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            9999999876544 334444332221110          0   0000     0     1346789999999999888753


Q ss_pred             C---------cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC---CCCEEEEeecCCeEEEE
Q 048118          231 Q---------SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV---DGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       231 ~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~l~~gs~Dg~v~~w  298 (303)
                      +         .|.+||.+..-.+.-..+...               .  ..+..-+.|+|   ++++|..+=+.|.+.-|
T Consensus       366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i---------------~--ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y  428 (445)
T KOG2139|consen  366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMI---------------G--GEYPAYISFGPLKNEGRLLSIAWSTGRIQRY  428 (445)
T ss_pred             CCchhhhhhhhhhhhcccccCceEEEecccc---------------c--CCCCceEEeeecccCCcEEEEEeccCceEee
Confidence            3         366677654433322211110               0  00112345554   56788888888887776


Q ss_pred             ec
Q 048118          299 GI  300 (303)
Q Consensus       299 ~~  300 (303)
                      ++
T Consensus       429 pl  430 (445)
T KOG2139|consen  429 PL  430 (445)
T ss_pred             ee
Confidence            65

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.54  E-value=4.6e-14  Score=108.53  Aligned_cols=168  Identities=24%  Similarity=0.381  Sum_probs=122.9

Q ss_pred             cceeeeecCCCCC--cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           16 DMVTAIATPIDNS--DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        16 ~~v~~v~~~~~~~--~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      +++.+..+.-..+  -+++.|.++|.+-+||+....+....+.     ....        ...+..|+++|.++.+.+.-
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----~~kv--------~~~~ash~qpvlsldyas~~  217 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----SSKV--------ESPNASHKQPVLSLDYASSC  217 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----cccc--------ccchhhccCcceeeeechhh
Confidence            4566665443322  3567778899999999986544332211     1111        12356799999999999876


Q ss_pred             CEEEEEeCCCcEEEEecCCcee-eeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118           94 RQIVSASRDRTIKLWNTLGECK-YTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY  171 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  171 (303)
                      ..=++|+.+..+.+|.+..... .++. .....+..+..+..-|++  ..++++++|+.||+|.-++..+...++-|.+.
T Consensus       218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLkyHsag  295 (323)
T KOG0322|consen  218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLKYHSAG  295 (323)
T ss_pred             cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhhhhhcc
Confidence            6778899999999998743211 0100 001123346778888875  57999999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118          172 VNTVAVSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                      |.+++|+|+.+.+|.++.|++|.+|++
T Consensus       296 vn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  296 VNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=6.4e-12  Score=111.27  Aligned_cols=202  Identities=21%  Similarity=0.327  Sum_probs=141.2

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID   92 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~   92 (303)
                      .|.-.+++.+++|. ++++|+|-.||.|.+|.--..+.           .+.....        +.=|..+|.++.|+++
T Consensus       203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~-----------~~~t~t~--------lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSD-----------DSETCTL--------LHWHHDEVNSLSFSSD  262 (792)
T ss_pred             hhcccceeEEeccc-cceEEEeccCCcEEEEecccccc-----------ccccceE--------EEecccccceeEEecC
Confidence            36666899999986 57999999999999996422110           0001111        2237889999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC----
Q 048118           93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH----  168 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~----  168 (303)
                      |.+|++||..+.+.+|......+ ++  ...-..+|..+.++|++.  ..+....|..|.+....+.....++.+-    
T Consensus       263 G~~LlSGG~E~VLv~Wq~~T~~k-qf--LPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  263 GAYLLSGGREGVLVLWQLETGKK-QF--LPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             CceEeecccceEEEEEeecCCCc-cc--ccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            99999999999999999755432 11  123356789999999873  4566677999999877555444333321    


Q ss_pred             -------CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-------C-----CeEEEEEEcCCCeEEEEEc
Q 048118          169 -------TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-------G-----AVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       169 -------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~-----~~v~~~~~s~~~~~l~~~~  229 (303)
                             .+-.+.++++|.-+.++-.+..|.|++||+.+...++.+..       +     -.+..++.+..|.|++...
T Consensus       338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence                   23467789999777888889999999999988777665521       1     1355666666788887652


Q ss_pred             ---------C--CcEEEEeCC
Q 048118          230 ---------E--QSIKIWDLE  239 (303)
Q Consensus       230 ---------~--~~i~iwd~~  239 (303)
                               +  -.+++|-..
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             eeehhhhccCceEEEEEEEEc
Confidence                     2  247777654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.53  E-value=4.7e-13  Score=106.74  Aligned_cols=224  Identities=19%  Similarity=0.280  Sum_probs=139.5

Q ss_pred             cceeeeecCC-CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEe------------CCCCce-eccc
Q 048118           16 DMVTAIATPI-DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL------------SSDGQF-VGHT   81 (303)
Q Consensus        16 ~~v~~v~~~~-~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~-~~h~   81 (303)
                      +.|+.+.|.+ .+...|+...+|.+|++|.+.....+......+..+....+..+.+            +|...| .+|+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4577788766 4557888899999999999865432211000011111122222211            111112 3688


Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCC-ceeeeeecCCCC-----ccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAH-----TEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      --|++|+++.|.+.++++ .|-.|.+|++.- +..+.+...+++     +..|++..|||... +.++..+..|+|++.|
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEee
Confidence            889999999999999876 467788998742 122223222333     34688899999763 5888999999999999


Q ss_pred             CCCceeE----EE------------EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CCceEEEecC---------
Q 048118          156 LSNCKLR----AT------------LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EGKRLYSLDA---------  209 (303)
Q Consensus       156 ~~~~~~~----~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~---------  209 (303)
                      ++...+.    ..            +.+--..|..+.|+++|+++++-. --+|++||+. ..+++.+++.         
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            9742210    00            111124688899999999997653 3699999994 4455544431         


Q ss_pred             ----CCe---EEEEEEcCCCeEEE-EEcCCcEEEEeCCCCc
Q 048118          210 ----GAV---IHALCFSPNRYWLC-AATEQSIKIWDLESKS  242 (303)
Q Consensus       210 ----~~~---v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~  242 (303)
                          ...   --.++|+.++..+. ++..+..++|++..+.
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                111   22367887765554 4557788999965543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.53  E-value=1.9e-12  Score=113.61  Aligned_cols=201  Identities=15%  Similarity=0.204  Sum_probs=139.2

Q ss_pred             cCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceee----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           81 TKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKY----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        81 ~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ..+|.++.|+|. ..+++.|..+|.|.+||+......    .......|..++..+.|-++.....+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            457899999995 567888899999999998654331    112234578889999998765545689999999999998


Q ss_pred             CCCceeE------EEEc------CCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCce----EEE-----ecCCCeE
Q 048118          156 LSNCKLR------ATLA------GHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKR----LYS-----LDAGAVI  213 (303)
Q Consensus       156 ~~~~~~~------~~~~------~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~----~~~-----~~~~~~v  213 (303)
                      ++.-...      ....      .....+++++|.|. -..|++|+++|.|..-+....+.    ++.     ..+..+|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            7543221      1111      11235789999884 45799999999998855433221    111     1235789


Q ss_pred             EEEEEcCCC-eEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee
Q 048118          214 HALCFSPNR-YWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY  290 (303)
Q Consensus       214 ~~~~~s~~~-~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs  290 (303)
                      +++.++|-. .++.++.|-.+++|.-. ....                    ...+.....++++++|||..+ .++++.
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P--------------------l~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP--------------------LLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCc--------------------chhhhhccceeeeeEEcCcCceEEEEEc
Confidence            999999975 34455559999999865 2211                    112223334578899999987 577888


Q ss_pred             cCCeEEEEecc
Q 048118          291 TDGVIRVWGIG  301 (303)
Q Consensus       291 ~Dg~v~~w~~~  301 (303)
                      .||.+.+||+.
T Consensus       462 ~~G~l~iWDLl  472 (555)
T KOG1587|consen  462 GDGNLDIWDLL  472 (555)
T ss_pred             CCCceehhhhh
Confidence            89999999984

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=5.9e-11  Score=93.94  Aligned_cols=157  Identities=21%  Similarity=0.359  Sum_probs=112.3

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCCCCCEEEE-EeCCCcEEEEECCC
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVS-ASWDRTVKVWNLSN  158 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~-~~~dg~i~iwd~~~  158 (303)
                      ..+|.++.+.++.  ++.. ..+.|.||....+.+.... ..........+  ..|.....+++. |-.-|.|++-|+..
T Consensus        94 ~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   94 NSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             ccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCCceEEEcCCCccceEEEEEhhh
Confidence            4678888887663  4433 4577999987644332111 11111122333  334332334544 33458999999976


Q ss_pred             cee--EEEEcCCCCCeeEEEECCCCCEEEEEeCCCe-EEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEEcC-C
Q 048118          159 CKL--RATLAGHTGYVNTVAVSPDGSLCASGGKDGV-ILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAATE-Q  231 (303)
Q Consensus       159 ~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~-~  231 (303)
                      .+.  ...+..|...|.+++++-+|..+|++|..|+ |||||.++|+.++.+..   ...+++++|||+..+||+++| |
T Consensus       169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            654  4678899999999999999999999999986 58999999999988854   467999999999999988775 8


Q ss_pred             cEEEEeCCCCc
Q 048118          232 SIKIWDLESKS  242 (303)
Q Consensus       232 ~i~iwd~~~~~  242 (303)
                      ++++|.++...
T Consensus       249 TlHiF~l~~~~  259 (346)
T KOG2111|consen  249 TLHIFSLRDTE  259 (346)
T ss_pred             eEEEEEeecCC
Confidence            99999987543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.4e-12  Score=114.12  Aligned_cols=194  Identities=18%  Similarity=0.227  Sum_probs=120.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCC---CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRD---KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +..|...+....|+|++ +.++.++.+   ..|.+|++......   ...                  .+.+|   ....
T Consensus       199 lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~---~l~------------------~~~g~---~~~~  253 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK---VVA------------------SFRGH---NGAP  253 (429)
T ss_pred             eccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE---EEe------------------cCCCc---cCce
Confidence            45677788999999986 466766543   36999998643211   000                  01122   2357


Q ss_pred             EEeeCCCEEEEEe-CCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEE
Q 048118           88 AFSIDNRQIVSAS-RDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRA  163 (303)
Q Consensus        88 ~~~~~~~~l~t~~-~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~  163 (303)
                      +|+|+|++|+.++ .++.+.||  |..+.....+.   .+...+....|+|++. ..++++..++..++|++... ....
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~-~i~f~s~~~g~~~I~~~~~~~~~~~  329 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT---SGAGNNTEPSWSPDGQ-SILFTSDRSGSPQVYRMSASGGGAS  329 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec---cCCCCcCCEEECCCCC-EEEEEECCCCCceEEEEECCCCCeE
Confidence            8999999887764 68877776  44333222221   2334467789999873 23444556788888876432 1122


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeC
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDL  238 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  238 (303)
                      .+ .+..  ....|+|+|++|+.++.++ +.+||+.+++..... .........|+|++.+++. +.++.+.+|++
T Consensus       330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STFLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            22 3333  4578999999998887765 555999887643221 1223356789999976655 45677776664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.52  E-value=7.8e-13  Score=113.33  Aligned_cols=212  Identities=18%  Similarity=0.258  Sum_probs=145.3

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC-ccccceeeeeecCCCcceEEEEeCCCCceecccC-CE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-EKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK-DV   84 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~-~i   84 (303)
                      -++.+.+|.+.|+.+.|+|..+.+|||||.|..++||.+.++ +++.                   +..+...+|.. .+
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------------Sape~~~g~~~~~v  131 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------------SAPEIDVGGGNVIV  131 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------------CCcceeecCCceEE
Confidence            356789999999999999988899999999999999998732 1111                   11112233443 46


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-ceeEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRA  163 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~~~  163 (303)
                      -++.|+|...-++..++.+++.+||+...  +.......|.+.|.+..|+-++  ..+++.+.|..|+|||.+. +...+
T Consensus       132 E~l~fHpTaDgil~s~a~g~v~i~D~stq--k~~~el~~h~d~vQSa~WseDG--~llatscKdkqirifDPRa~~~piQ  207 (1012)
T KOG1445|consen  132 ECLRFHPTADGILASGAHGSVYITDISTQ--KTAVELSGHTDKVQSADWSEDG--KLLATSCKDKQIRIFDPRASMEPIQ  207 (1012)
T ss_pred             EEeecccCcCceEEeccCceEEEEEcccC--ceeecccCCchhhhccccccCC--ceEeeecCCcceEEeCCccCCCccc
Confidence            78999998766666677799999998543  2334446788899999999887  4788999999999999865 45566


Q ss_pred             EEcCCCCC-eeEEEECCCCCEEEEEeC----CCeEEEEeCCC-CceEEEe--cCCCeEEEEEEcCCCeEEEEE--cCCcE
Q 048118          164 TLAGHTGY-VNTVAVSPDGSLCASGGK----DGVILLWDLAE-GKRLYSL--DAGAVIHALCFSPNRYWLCAA--TEQSI  233 (303)
Q Consensus       164 ~~~~~~~~-i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~-~~~~~~~--~~~~~v~~~~~s~~~~~l~~~--~~~~i  233 (303)
                      ...+|.+. -..+.|.-+-..|++.+.    -+.|++||.+. +.++.++  .....|.---|.||..++..+  .+.+|
T Consensus       208 ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l  287 (1012)
T KOG1445|consen  208 TTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKL  287 (1012)
T ss_pred             cccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceE
Confidence            66777643 233555443335554443    35789999875 3444443  333334444578886544433  46778


Q ss_pred             EEEeCCCC
Q 048118          234 KIWDLESK  241 (303)
Q Consensus       234 ~iwd~~~~  241 (303)
                      +++.+..+
T Consensus       288 ~~lE~~d~  295 (1012)
T KOG1445|consen  288 FMLEMQDR  295 (1012)
T ss_pred             EEEEecCC
Confidence            88887544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3.6e-11  Score=105.55  Aligned_cols=196  Identities=15%  Similarity=0.164  Sum_probs=125.1

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeC---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc--EE
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASR---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT--VK  152 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~--i~  152 (303)
                      ..|...+...+|+|+|+.|+..+.   +..|.+|++.+.....+..   ....+...+|+|++.. .+++.+.++.  |.
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy  273 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN---FPGMTFAPRFSPDGRK-VVMSLSQGGNTDIY  273 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec---CCCcccCcEECCCCCE-EEEEEecCCCceEE
Confidence            456678889999999998887763   4679999986543333321   2334567889998742 3445555655  77


Q ss_pred             EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118          153 VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       153 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (303)
                      +||+.+++.. .+..+........|+|+|+.|+..+. +|  .|.++|+.+++...............|+|++..++...
T Consensus       274 ~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        274 TMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             EEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEE
Confidence            7788776653 35555566678899999998887764 33  68888887654432222234456678999998776543


Q ss_pred             --C--CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-C-----eEEEEe
Q 048118          230 --E--QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-G-----VIRVWG  299 (303)
Q Consensus       230 --~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g-----~v~~w~  299 (303)
                        .  ..|.+||+.++.. ..+...                     .......|+|||++|+..+.+ +     .+.+++
T Consensus       353 ~~~~~~~i~~~d~~~~~~-~~lt~~---------------------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        353 QGGGQFSIGVMKPDGSGE-RILTSG---------------------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             cCCCceEEEEEECCCCce-EeccCC---------------------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence              2  3688888765432 111100                     012346799999987755443 2     455556


Q ss_pred             c
Q 048118          300 I  300 (303)
Q Consensus       300 ~  300 (303)
                      +
T Consensus       411 l  411 (435)
T PRK05137        411 L  411 (435)
T ss_pred             C
Confidence            5

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.3e-11  Score=108.14  Aligned_cols=195  Identities=19%  Similarity=0.194  Sum_probs=122.9

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKV  153 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~i  153 (303)
                      .+...+...+|+|+|+.++..+.+   ..|.+|++.+.....+...   .....+.+|+|++.. .+++.+.+|  .|++
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---RGINGAPSFSPDGRR-LALTLSRDGNPEIYV  276 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC---CCCccCceECCCCCE-EEEEEeCCCCceEEE
Confidence            455678889999999988877643   4688999865433333221   223446889998742 334555555  5999


Q ss_pred             EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CCe--EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-
Q 048118          154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DGV--ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-  229 (303)
Q Consensus       154 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  229 (303)
                      ||+.+++.. .+..+.......+|+|+|+.|+.++. +|.  |.++|+.+++.......+......+|+|++..++... 
T Consensus       277 ~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        277 MDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEC
Confidence            999877653 34445555677899999998887764 444  6667776665322212233344689999998776543 


Q ss_pred             C---CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-C--eEEEEec
Q 048118          230 E---QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-G--VIRVWGI  300 (303)
Q Consensus       230 ~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g--~v~~w~~  300 (303)
                      +   ..|++||+.+++.. .+...                     .......|+|+|++|+..+.+ |  .+.++++
T Consensus       356 ~~~~~~I~v~d~~~g~~~-~Lt~~---------------------~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR-TLTPG---------------------SLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             CCCceeEEEEECCCCCeE-ECCCC---------------------CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            2   25999999776543 11100                     001235799999987766553 3  4555554

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=7e-13  Score=107.29  Aligned_cols=186  Identities=16%  Similarity=0.270  Sum_probs=140.6

Q ss_pred             ceeeeecCCCCCcEEEEecCC--CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE--EEEEEeeC
Q 048118           17 MVTAIATPIDNSDMIVTASRD--KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV--LSVAFSID   92 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i--~~i~~~~~   92 (303)
                      .+..+.-.+..+.++++||..  ..+++||+....+.+...  .++              ..+.+-.-+|  .++.|-+.
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK--Nvp--------------nD~L~LrVPvW~tdi~Fl~g  213 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK--NVP--------------NDRLGLRVPVWITDIRFLEG  213 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc--CCC--------------CccccceeeeeeccceecCC
Confidence            455666777778889999999  899999997653322110  000              0111122233  45778777


Q ss_pred             --CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-EcCCC
Q 048118           93 --NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHT  169 (303)
Q Consensus        93 --~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~  169 (303)
                        ...|+|+..-+.+|+||... .+.++...+....++.++...|.+  ..+++|...|.+..||++.++.... +.+..
T Consensus       214 ~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~E~~is~~~l~p~g--n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t  290 (412)
T KOG3881|consen  214 SPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFLENPISSTGLTPSG--NFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT  290 (412)
T ss_pred             CCCceEEEEecceeEEEecCcc-cCcceeEeccccCcceeeeecCCC--cEEEEecccchhheecccCceeeccccCCcc
Confidence              77899999999999999864 334444455567789999999976  5788999999999999999887665 88889


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN  221 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~  221 (303)
                      +.|.++..+|.++++++++.|+.|||+|+.+.+.++..-..+..+.+-+.++
T Consensus       291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            9999999999999999999999999999999877766655566677767654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=1e-13  Score=114.44  Aligned_cols=207  Identities=16%  Similarity=0.238  Sum_probs=147.5

Q ss_pred             eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEE------------------eCCCCc---e
Q 048118           19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV------------------LSSDGQ---F   77 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~------------------~~~~~~---~   77 (303)
                      +.+.+..+ +++++.|+.-|.|..+|..+.......      .-...|.++.                  +...|.   +
T Consensus       133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei------~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC  205 (545)
T KOG1272|consen  133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEI------NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC  205 (545)
T ss_pred             eeeeecCC-ccEEEecCCccceeeeecccceeeeee------ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee
Confidence            45566644 568888999999999997643211000      0001112222                  222221   1


Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      .....+|..+.|.|..-+|++++..|.++.-|+.....  +.........+..++-+|-  ...+-.|...|+|-+|...
T Consensus       206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             hhhcCchhhhcccchhheeeecccCCceEEEeechhhh--hHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCC
Confidence            22345788899999999999999999999888743211  1111222334555666664  3467789999999999998


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWD  237 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd  237 (303)
                      ..+++..+..|.++|.++++.++|++++|++.|..++|||++....+.+.........+++|.. .+||++....+.+|-
T Consensus       282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqk-glLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQK-GLLALSYGDHVQIWK  360 (545)
T ss_pred             CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccc-cceeeecCCeeeeeh
Confidence            8888888889999999999999999999999999999999998887777766677788888854 467778888999995

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=9.8e-12  Score=99.94  Aligned_cols=193  Identities=16%  Similarity=0.281  Sum_probs=129.7

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC-CEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN-RQI   96 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~l   96 (303)
                      +-.++|++. -.-||.+.+|.+|++|+-...+..      .++.                 .-...|.+++|-|.+ +-|
T Consensus       101 lr~~aWhqH-~~~fava~nddvVriy~ksst~pt------~Lks-----------------~sQrnvtclawRPlsasel  156 (445)
T KOG2139|consen  101 LRGVAWHQH-IIAFAVATNDDVVRIYDKSSTCPT------KLKS-----------------VSQRNVTCLAWRPLSASEL  156 (445)
T ss_pred             eeeEeechh-hhhhhhhccCcEEEEeccCCCCCc------eecc-----------------hhhcceeEEEeccCCccee
Confidence            446788874 346889999999999986542211      0000                 012478999999964 567


Q ss_pred             EEEeCCCcEEEEecCCc----e--------eeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCceeEE
Q 048118           97 VSASRDRTIKLWNTLGE----C--------KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKLRA  163 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~----~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~~~  163 (303)
                      +.|+..| |.+|.....    .        ...+....+ ..+|.+++|++++.  .+++++. +..|.+||..++....
T Consensus       157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p  232 (445)
T KOG2139|consen  157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP  232 (445)
T ss_pred             eeeecce-eEEEEcCcccccccccccccccchhheeCCC-CceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence            7777755 889975211    0        011222223 36799999999874  5666654 6789999998876544


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC-CceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE-GKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  238 (303)
                      -..-.-+.++-+.||||+.+|..++-|+..++|+... -....-.-....|...+|+|.|.+|..+..+.=.+|.+
T Consensus       233 L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl  308 (445)
T KOG2139|consen  233 LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL  308 (445)
T ss_pred             ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence            3323456788999999999999999999999996543 22222233345899999999997665555555555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3.1e-11  Score=105.48  Aligned_cols=188  Identities=15%  Similarity=0.175  Sum_probs=116.2

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+...+.+.+|+|+|+.++..+.+   ..|.+||+.+.....+...   ...+.+..|+|++. ..+++.+.++...+|.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~---~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF---KGSNSAPAWSPDGR-TLAVALSRDGNSQIYT  268 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC---CCCccceEECCCCC-EEEEEEccCCCceEEE
Confidence            455677889999999988877643   3588999865433333221   22345789999873 2334567778766664


Q ss_pred             --CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeC--CCCceEEEecCCCeEEEEEEcCCCeEEEEEc-
Q 048118          156 --LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DGVILLWDL--AEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-  229 (303)
Q Consensus       156 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  229 (303)
                        +.++. ...+..+........|+|||+.|+..+. ++...+|.+  .+++..............+|+|+|.+++... 
T Consensus       269 ~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        269 VNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             EECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence              44444 3445545555677899999998876654 456666654  4443221111223334578999998776543 


Q ss_pred             CC---cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          230 EQ---SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       230 ~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      ++   .|++||+.+++... +...                     .......|+|||++|+.++.++
T Consensus       348 ~~g~~~I~v~d~~~g~~~~-lt~~---------------------~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        348 VGGAFKLYVQDLATGQVTA-LTDT---------------------TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             cCCcEEEEEEECCCCCeEE-ccCC---------------------CCccCceECCCCCEEEEEEecC
Confidence            22   59999998765421 1100                     0012367999999887766544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.47  E-value=2.6e-12  Score=102.06  Aligned_cols=209  Identities=17%  Similarity=0.209  Sum_probs=128.3

Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      -++|+|+|+++|+++.- .+.+-|..+-+....   -..-..|.-+-|..+.. ..+.....++.|++|++...+...++
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql---f~cldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL---FLCLDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHH---HHHHHHhhheeeeccce-eeeeeeeccceEEEEEeecceeEEEe
Confidence            46899999999998775 566666533211110   01122345566776653 24555677889999999888877888


Q ss_pred             cCCCCCeeEEEECCCCCEEEE-EeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCc----EEEEeCCC
Q 048118          166 AGHTGYVNTVAVSPDGSLCAS-GGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQS----IKIWDLES  240 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~----i~iwd~~~  240 (303)
                      .....++.+++|||+|++++. ..-|-+|.+|.+.+......--....+..++|+|+|++.+..+...    +.+..-+.
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            888889999999999976654 5568999999998766544333344567889999999887765321    11111111


Q ss_pred             Cceeeeeeeccccc--cccccCcccee----ecc------ccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          241 KSIVEDLKVDLKTE--AEKSEATTATT----TIK------KKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       241 ~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~------~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      -.++++.+.+....  .+-.+......    .+.      .....+..++|+|.+.+|++|+.|+.+|+-+
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence            12222222211110  00000000000    000      0123456789999999999999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.47  E-value=8.9e-12  Score=99.57  Aligned_cols=271  Identities=17%  Similarity=0.283  Sum_probs=166.0

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---cccCCEEEEEEe
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---GHTKDVLSVAFS   90 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~h~~~i~~i~~~   90 (303)
                      ..+-|.+|-|+-. +++|+||..+|-+-++.-.+..+.--.....++.|.         |+..|.   .-...|+.|.|.
T Consensus        24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe---------pEFDYLkSleieEKinkIrw~   93 (433)
T KOG1354|consen   24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE---------PEFDYLKSLEIEEKINKIRWL   93 (433)
T ss_pred             hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccC---------cccchhhhhhhhhhhhhceec
Confidence            3466888888865 579999999999999976533220000111122221         111111   234568899999


Q ss_pred             eCCC--EEEEEeCCCcEEEEecCCceeee----------------------------------eecCCCCccceEEEEEc
Q 048118           91 IDNR--QIVSASRDRTIKLWNTLGECKYT----------------------------------IQEGDAHTEWVSCVRFS  134 (303)
Q Consensus        91 ~~~~--~l~t~~~d~~i~vw~~~~~~~~~----------------------------------~~~~~~~~~~i~~~~~~  134 (303)
                      +++.  .++..+.|++|++|.+.......                                  -....+|+--|.++.++
T Consensus        94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N  173 (433)
T KOG1354|consen   94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN  173 (433)
T ss_pred             CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence            8764  67888999999999753211000                                  00123466667888888


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCce-e--EEEEcCCC-----CCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCce--
Q 048118          135 PNTLQPTIVSASWDRTVKVWNLSNCK-L--RATLAGHT-----GYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKR--  203 (303)
Q Consensus       135 ~~~~~~~~~~~~~dg~i~iwd~~~~~-~--~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~--  203 (303)
                      .+.  ..+++ ..|=.|.+|.+.--. .  ...++.++     .-|++..|+|. .+.|+-.+..|+|++.|++....  
T Consensus       174 sD~--Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd  250 (433)
T KOG1354|consen  174 SDK--ETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD  250 (433)
T ss_pred             Ccc--ceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence            764  23443 467778899875321 1  12223332     45888999994 46788888999999999984321  


Q ss_pred             ----EEEec-----------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeec
Q 048118          204 ----LYSLD-----------AGAVIHALCFSPNRYWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTI  267 (303)
Q Consensus       204 ----~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (303)
                          +...+           .-+.|..+.|++.|.++.+-.--.|++||+. ..+.+..+.++-.........--....+
T Consensus       251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If  330 (433)
T KOG1354|consen  251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF  330 (433)
T ss_pred             chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence                11111           1135888999999999988888999999983 4444444443211100000000000000


Q ss_pred             cccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          268 KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       268 ~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                           -=..++|+.++.+++|||..+..++|++++
T Consensus       331 -----dKFec~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  331 -----DKFECSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             -----heeEEEEcCCcceEecccccceEEEecCCC
Confidence                 014578999999999999999999999653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=3.7e-11  Score=96.06  Aligned_cols=228  Identities=20%  Similarity=0.351  Sum_probs=140.8

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcc-c---------------cceeeee-ecC-CCcceE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEK-T---------------YGVARRR-LTG-HSHFVQ   67 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~-~---------------~~~~~~~-~~~-~~~~i~   67 (303)
                      .+...++||.+.|+....-|.. +-+++.+.|.++|+|.-....+ .               +....+. +.+ ....+.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            5666799999999988776654 5699999999999995422110 0               0000000 001 122344


Q ss_pred             EEEeCCC-------CceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC
Q 048118           68 DVVLSSD-------GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP  140 (303)
Q Consensus        68 ~~~~~~~-------~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  140 (303)
                      ....+.+       ..+..|...|..+-|+...+++++.+.|+.+.--.........     .+.  ..+.+-.++-...
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg-----~Y~--~~~~~t~~~~d~~  166 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG-----GYN--FETPASALQFDAL  166 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc-----ceE--eeccCCCCceeeE
Confidence            4444433       2467899999999999999999999999876432222211100     000  0000000000000


Q ss_pred             EEEEEeCCCcEEEEEC--CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE--EecCCCeEEEE
Q 048118          141 TIVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY--SLDAGAVIHAL  216 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~  216 (303)
                      +...|...|.|..-.+  ..-.+..++.+|.+.+.+++|.|..+.|.+|..|..+.+||+..++.+.  .......|+.+
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            2233444444444333  3445678899999999999999999999999999999999997544322  12234566666


Q ss_pred             EEcCC-CeEEEEEcCCcEEEEeCCCC
Q 048118          217 CFSPN-RYWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       217 ~~s~~-~~~l~~~~~~~i~iwd~~~~  241 (303)
                      +.-+. ..+++++.||.|.+||++..
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccce
Confidence            65544 46677888999999998654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.43  E-value=1.1e-11  Score=104.42  Aligned_cols=138  Identities=17%  Similarity=0.319  Sum_probs=108.0

Q ss_pred             cCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCC-----c---------eeeeeecCC------------CCccceEEEEE
Q 048118           81 TKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLG-----E---------CKYTIQEGD------------AHTEWVSCVRF  133 (303)
Q Consensus        81 ~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~-----~---------~~~~~~~~~------------~~~~~i~~~~~  133 (303)
                      +..++++.|-|.+ ..++..-.++.+.++|..-     .         ..+.+...+            .....|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            3689999999865 4677777889999996421     0         011110000            11235677899


Q ss_pred             cCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCe
Q 048118          134 SPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAV  212 (303)
Q Consensus       134 ~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~  212 (303)
                      +|++  ..+++.+.||.+||||..+++++..++..-+...+++|||||+++++|++|--|.||.+..++.+..-+ +.++
T Consensus       299 S~DG--~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW  376 (636)
T KOG2394|consen  299 SPDG--KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW  376 (636)
T ss_pred             cCCC--ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc
Confidence            9976  579999999999999999988887777777899999999999999999999999999999888776654 5689


Q ss_pred             EEEEEEcC
Q 048118          213 IHALCFSP  220 (303)
Q Consensus       213 v~~~~~s~  220 (303)
                      |..++|.|
T Consensus       377 Vs~VaFDp  384 (636)
T KOG2394|consen  377 VSVVAFDP  384 (636)
T ss_pred             eeeEeecc
Confidence            99999987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=1.1e-11  Score=111.59  Aligned_cols=194  Identities=18%  Similarity=0.293  Sum_probs=138.9

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEE--EEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCV--RFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      |....+..+...++....++.+.+||.................-..++  -++++  .-++++|+.-+.|.+|+....+.
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccCC
Confidence            334455556677888888899999997543322111100000111122  23333  34788899999999999874443


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE--EecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY--SLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                      ...+.+|.+.|.++.++.+|+++++.|.|+++++|++.+.+.+.  -+.+...+.+++|.|. .+++++.|...++|+.+
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecc
Confidence            34688999999999999999999999999999999999877654  3456788999999998 77788899999999764


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      . ..+..++.+.                   .-.++.++..+....++|++.||.+++|++
T Consensus       247 ~-~~l~~y~~h~-------------------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  247 G-TQLEVYDEHS-------------------GKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             c-ceehhhhhhh-------------------hcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            3 3222222211                   123467888889999999999999999987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1e-10  Score=102.58  Aligned_cols=199  Identities=19%  Similarity=0.181  Sum_probs=120.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +..|...+....|+|++. .|+..+.   +..|.+|++......      .+                  ..+.+.....
T Consensus       199 lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~------~l------------------~~~~g~~~~~  253 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRE------LV------------------ASFRGINGAP  253 (433)
T ss_pred             eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEE------Ee------------------ccCCCCccCc
Confidence            444566788889999864 6666653   346888887543211      00                  1112233467


Q ss_pred             EEeeCCCEEE-EEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-eCCCc--EEEEECCCcee
Q 048118           88 AFSIDNRQIV-SASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-SWDRT--VKVWNLSNCKL  161 (303)
Q Consensus        88 ~~~~~~~~l~-t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~dg~--i~iwd~~~~~~  161 (303)
                      +|+|+|+.++ +.+.++  .|.+|+..+.....+.   .+.......+|+|++.  .++.. ..+|.  |.++|+.+++.
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT---NHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc---cCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCe
Confidence            8999998765 445555  4888887654332222   2222345678999873  34443 34555  66667766554


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCC---eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc----CCcEE
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDG---VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT----EQSIK  234 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~  234 (303)
                      .. +..+.......+|+|+|++++..+.++   .|.+||+.+++.. .+..........|+|++.+++...    .+.|+
T Consensus       329 ~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~  406 (433)
T PRK04922        329 ER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLA  406 (433)
T ss_pred             EE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            32 222223445689999999987765433   6999999877643 333333345678999997665543    24588


Q ss_pred             EEeCCCC
Q 048118          235 IWDLESK  241 (303)
Q Consensus       235 iwd~~~~  241 (303)
                      ++++..+
T Consensus       407 ~~~~~g~  413 (433)
T PRK04922        407 AVSTDGR  413 (433)
T ss_pred             EEECCCC
Confidence            8888543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.38  E-value=6.6e-10  Score=97.29  Aligned_cols=188  Identities=21%  Similarity=0.217  Sum_probs=118.3

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKV  153 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~i  153 (303)
                      .+...+...+|+|+|++++.+..+   ..|.+|++.+.....+..   ....+.+.+|+|++. ..+++.+.++  .|++
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---~~~~~~~~~~spDg~-~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---FPGMNGAPAFSPDGS-KLAVSLSKDGNPDIYV  262 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---CCCCccceEECCCCC-EEEEEECCCCCccEEE
Confidence            344567788899999998877654   478899986543222221   223355688999873 2334444444  5888


Q ss_pred             EECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-
Q 048118          154 WNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-  229 (303)
Q Consensus       154 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  229 (303)
                      ||+.+++.. .+..+........|+|+++.|+..+. ++  .|.++|+.+++...............|+|++.+++... 
T Consensus       263 ~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       263 MDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             EECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence            898776543 34444445567789999998876654 33  68888887765432222344566788999987666554 


Q ss_pred             CC---cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          230 EQ---SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       230 ~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      ++   .|++||+.++... .+...                  .   ......|+|++++|+..+.++
T Consensus       342 ~~~~~~i~~~d~~~~~~~-~l~~~------------------~---~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       342 EGGGFNIAVMDLDGGGER-VLTDT------------------G---LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCCceEEEEEeCCCCCeE-EccCC------------------C---CCCCceECCCCCEEEEEEeCC
Confidence            33   6899998764321 11100                  0   011246899999888777765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.38  E-value=2.3e-10  Score=91.13  Aligned_cols=242  Identities=22%  Similarity=0.297  Sum_probs=156.0

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---------------
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---------------   78 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------   78 (303)
                      ..+.+..++|+|++..++.|..-|-.|.+|.+....      ...++.....+.-+++.++++|-               
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccce------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            345677899999988888898889999999986422      11223334445666777777642               


Q ss_pred             ------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe
Q 048118           79 ------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS  146 (303)
Q Consensus        79 ------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  146 (303)
                                  --+-..+.+.|+|+|..++         +||..-+.+  +... .....+..+.|+|.+  ..++.|+
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leyk--v~aY-e~~lG~k~v~wsP~~--qflavGs  229 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYK--VYAY-ERGLGLKFVEWSPCN--QFLAVGS  229 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhhe--eeee-eeccceeEEEecccc--ceEEeec
Confidence                        2233567889999987765         565321111  1000 112347788999964  4789999


Q ss_pred             CCCcEEEEECCCcee------------------------------------------------------------EEEEc
Q 048118          147 WDRTVKVWNLSNCKL------------------------------------------------------------RATLA  166 (303)
Q Consensus       147 ~dg~i~iwd~~~~~~------------------------------------------------------------~~~~~  166 (303)
                      .|+.+|+-+-.+.+.                                                            ...++
T Consensus       230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk  309 (447)
T KOG4497|consen  230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK  309 (447)
T ss_pred             cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence            999887653111000                                                            00000


Q ss_pred             ------CCCCCeeEEEECCCCCEEEEEeC--CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEe
Q 048118          167 ------GHTGYVNTVAVSPDGSLCASGGK--DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWD  237 (303)
Q Consensus       167 ------~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd  237 (303)
                            .....+.-++|++|..++++-..  -..+-+||++..+.-..+....+|+...|.|...-|+.++ ..++++|-
T Consensus       310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence                  11224567899999988887643  2578899998765444445568899999999986555554 55799998


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      ......+..                     ...+..+..+.|.-+|..++..+.|....
T Consensus       390 psg~~~V~v---------------------P~~GF~i~~l~W~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  390 PSGPRVVGV---------------------PKKGFNIQKLQWLQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             CCCceEEec---------------------CCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence            765443321                     11224456788999999999998887543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=5.7e-11  Score=100.91  Aligned_cols=164  Identities=20%  Similarity=0.307  Sum_probs=114.5

Q ss_pred             cccCCEEEEEEeeCCCEE-EEEeCCCcEEEEecCCceeee------------eecCC--------------CC-------
Q 048118           79 GHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYT------------IQEGD--------------AH-------  124 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~------------~~~~~--------------~~-------  124 (303)
                      .+...-+.|..+|||+|+ +||..--.|++||+.....+.            +...+              .|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            455667789999999975 566677789999964321110            00000              00       


Q ss_pred             ccce----EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 048118          125 TEWV----SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE  200 (303)
Q Consensus       125 ~~~i----~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  200 (303)
                      ...|    ..++++.-.  ..+..++....|+-+++..+..+..+....+.++++.+++...+|++|+.+|.|..||.+.
T Consensus       129 ~~RIP~~GRDm~y~~~s--cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPS--CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeecCcCCccccccCCC--ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            0001    112222111  1355566667788888888888777777778999999999999999999999999999998


Q ss_pred             CceEEEecCC------------CeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118          201 GKRLYSLDAG------------AVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV  244 (303)
Q Consensus       201 ~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~  244 (303)
                      ...+.++...            ..|+++.|+.+|..++++ +.|.+.|||+++.+.+
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            8776665432            248999999989877665 5899999999987654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.36  E-value=1.3e-10  Score=91.14  Aligned_cols=157  Identities=20%  Similarity=0.217  Sum_probs=115.7

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-CceeE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-NCKLR  162 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~~~~  162 (303)
                      -.++.|++.+..++++..+|.+.+-+.........+..+.|.....-..|+... .+.+.+|+.|+.+..||++ .++..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecCCCceEEEEEecCCccee
Confidence            457889999999999999999985554333333344456777777777887643 3578899999999999998 33333


Q ss_pred             EE-EcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCC-CCceEEEecCCCeEEEEEEcCCC--eEEEEEcCCcEEEEe
Q 048118          163 AT-LAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLA-EGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQSIKIWD  237 (303)
Q Consensus       163 ~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd  237 (303)
                      .. .+-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..-.....|..+..+|.-  .+++++..+-.++-+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence            32 445778898988887 56799999999999999998 56777766667789999999863  456666665566666


Q ss_pred             CCCC
Q 048118          238 LESK  241 (303)
Q Consensus       238 ~~~~  241 (303)
                      ....
T Consensus       283 ~~~~  286 (339)
T KOG0280|consen  283 SSDK  286 (339)
T ss_pred             eccc
Confidence            5443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.35  E-value=4.1e-10  Score=89.28  Aligned_cols=171  Identities=18%  Similarity=0.315  Sum_probs=114.8

Q ss_pred             CcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEEEECC-
Q 048118          103 RTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTVAVSP-  179 (303)
Q Consensus       103 ~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-  179 (303)
                      +.|.|||-.. .+...+.    -..+|.++++.++.    ++. -.++.|.+|...++ +....+....++=--+++.| 
T Consensus        75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~r----iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDR----IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT  145 (346)
T ss_pred             ceEEEEecccCcEEEEEE----eccceeeEEEcCCe----EEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence            5799998432 2222221    24568899998762    333 35788999998643 34444433222222334444 


Q ss_pred             -CCCEEEE-EeCCCeEEEEeCCCCce---EEEecCCCeEEEEEEcCCCeEEEEEc-CC-cEEEEeCCCCceeeeeeeccc
Q 048118          180 -DGSLCAS-GGKDGVILLWDLAEGKR---LYSLDAGAVIHALCFSPNRYWLCAAT-EQ-SIKIWDLESKSIVEDLKVDLK  252 (303)
Q Consensus       180 -~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~~~  252 (303)
                       +..+|+. |-.-|+|+|-|+...+.   ..-..+.+.|.+++.+-+|.++|+++ .| -|+|||.+++.++.+++--  
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG--  223 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG--  223 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--
Confidence             3334544 44679999999976544   22234578899999999999888765 44 4999999999998876521  


Q ss_pred             cccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                      .....+.+++|||+..+||++|+-|+|++|.+
T Consensus       224 ----------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  224 ----------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             ----------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence                            11223567999999999999999999999976

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=2.8e-08  Score=84.58  Aligned_cols=245  Identities=14%  Similarity=0.233  Sum_probs=143.7

Q ss_pred             eeeeecCCCCCcEEEEecC----CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           18 VTAIATPIDNSDMIVTASR----DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      ..-+.++|++. +|.++..    ++.|..|++.........           +..        ..........++++|++
T Consensus        39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-----------~~~--------~~~~g~~p~~i~~~~~g   98 (345)
T PF10282_consen   39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTL-----------LNS--------VPSGGSSPCHIAVDPDG   98 (345)
T ss_dssp             ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEE-----------EEE--------EEESSSCEEEEEECTTS
T ss_pred             CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEE-----------eee--------eccCCCCcEEEEEecCC
Confidence            45567777654 4554444    568888887654211111           010        01122345678899999


Q ss_pred             CEEEEEe-CCCcEEEEecCCcee--ee--eecC--------CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           94 RQIVSAS-RDRTIKLWNTLGECK--YT--IQEG--------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        94 ~~l~t~~-~d~~i~vw~~~~~~~--~~--~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      ++++++. .++.|.++++.....  ..  ....        ........++.++|++. ..+++.-....|++|++....
T Consensus        99 ~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen   99 RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTTTEEEEEEE-TTS
T ss_pred             CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCCCEEEEEEEeCCC
Confidence            9888876 488999998754211  11  1100        01123467899999863 244444445689999986544


Q ss_pred             --eE--EEEcC-CCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCC--CCc--eEEEec-------CCCeEEEEEEcCCCe
Q 048118          161 --LR--ATLAG-HTGYVNTVAVSPDGSLCASGG-KDGVILLWDLA--EGK--RLYSLD-------AGAVIHALCFSPNRY  223 (303)
Q Consensus       161 --~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~--~~~--~~~~~~-------~~~~v~~~~~s~~~~  223 (303)
                        +.  ..+.. ....-..+.|+|+++++.+.. .+++|.++++.  .+.  .+..+.       .......++++|++.
T Consensus       178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~  257 (345)
T PF10282_consen  178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR  257 (345)
T ss_dssp             -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred             ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence              32  22222 224567899999999875554 58899999987  332  222221       122577899999998


Q ss_pred             EEEEEc--CCcEEEEeCC--CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEE
Q 048118          224 WLCAAT--EQSIKIWDLE--SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVW  298 (303)
Q Consensus       224 ~l~~~~--~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w  298 (303)
                      +|.++.  .+.|.+|+++  ++++.. +..                 ..........++++|+|++|++++ .++.|.+|
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~-~~~-----------------~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTL-VQT-----------------VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEE-EEE-----------------EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEE-EEE-----------------EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            776654  6789999983  233321 111                 001112346789999999988776 67799999


Q ss_pred             ecc
Q 048118          299 GIG  301 (303)
Q Consensus       299 ~~~  301 (303)
                      +++
T Consensus       320 ~~d  322 (345)
T PF10282_consen  320 DID  322 (345)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=9e-10  Score=96.33  Aligned_cols=197  Identities=13%  Similarity=0.138  Sum_probs=116.0

Q ss_pred             ccccceeeeecCCCCCcEEEEec---CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           13 AHTDMVTAIATPIDNSDMIVTAS---RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.+.+....|+|++. .|+..+   .+..|.+|++..++..      .+                  ....+.+....|
T Consensus       196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~------~l------------------~~~~~~~~~~~~  250 (429)
T PRK03629        196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVR------QV------------------ASFPRHNGAPAF  250 (429)
T ss_pred             cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeE------Ec------------------cCCCCCcCCeEE
Confidence            3455678899999875 455433   2346888887543211      00                  001122235789


Q ss_pred             eeCCCEEEEE-eCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCCcEEEE--ECCCceeEE
Q 048118           90 SIDNRQIVSA-SRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDRTVKVW--NLSNCKLRA  163 (303)
Q Consensus        90 ~~~~~~l~t~-~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i~iw--d~~~~~~~~  163 (303)
                      +|+|+.|+.. +.++  .|.+||..+.....+..   +...+....|+|++.  .++..+ .++..++|  |+.+++.. 
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~---~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~-  324 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---GRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ-  324 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC---CCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-
Confidence            9999987754 4444  47788876543322221   223456789999873  454444 34555555  66655433 


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CC---cEEEE
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQ---SIKIW  236 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~---~i~iw  236 (303)
                      .+...........|+|+|++++..+.+   ..|.+||+.+++.. .+..........|+|||.+++.++ ++   .++++
T Consensus       325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            333333445678999999998776543   35888999877542 333222334678999997665543 43   37777


Q ss_pred             eCCCC
Q 048118          237 DLESK  241 (303)
Q Consensus       237 d~~~~  241 (303)
                      ++..+
T Consensus       404 ~~~G~  408 (429)
T PRK03629        404 STDGR  408 (429)
T ss_pred             ECCCC
Confidence            87543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=8.4e-10  Score=96.94  Aligned_cols=200  Identities=17%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +..|...+....|+|++. .|+..+.   +..|.+|++......                        .+..+.+.+...
T Consensus       197 lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~------------------------~l~~~~g~~~~~  251 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE------------------------LVGNFPGMTFAP  251 (435)
T ss_pred             EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE------------------------EeecCCCcccCc
Confidence            455667888999999865 5665543   468999988643211                        011234456678


Q ss_pred             EEeeCCCEEE-EEeCCCc--EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCC--cEEEEECCCcee
Q 048118           88 AFSIDNRQIV-SASRDRT--IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDR--TVKVWNLSNCKL  161 (303)
Q Consensus        88 ~~~~~~~~l~-t~~~d~~--i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg--~i~iwd~~~~~~  161 (303)
                      +|+|+|+.++ +.+.++.  |.+||..+.....+.   .+........|+|++.  .++..+ .+|  .|+++|+.+++.
T Consensus       252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt---~~~~~~~~~~~spDG~--~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT---DSPAIDTSPSYSPDGS--QIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             EECCCCCEEEEEEecCCCceEEEEECCCCceEEcc---CCCCccCceeEcCCCC--EEEEEECCCCCCeEEEEECCCCCe
Confidence            8999998765 5566665  555576544332222   1233345688999873  344333 333  577788876654


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--C-----C
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--E-----Q  231 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-----~  231 (303)
                      .. +..+...+....|+|+|+.|+..+.+   ..|.+||+.++.. ..+.....+....|+|++..++...  .     .
T Consensus       327 ~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        327 RR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             EE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence            33 33334556678899999998876543   3688888765432 3333333466789999987765432  1     3


Q ss_pred             cEEEEeCCCCc
Q 048118          232 SIKIWDLESKS  242 (303)
Q Consensus       232 ~i~iwd~~~~~  242 (303)
                      .++++|+..+.
T Consensus       405 ~L~~~dl~g~~  415 (435)
T PRK05137        405 KLYTVDLTGRN  415 (435)
T ss_pred             eEEEEECCCCc
Confidence            58888886554

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.9e-11  Score=103.64  Aligned_cols=176  Identities=24%  Similarity=0.450  Sum_probs=122.0

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.||...|-.++-- ++++-|+++|.|.++++|.+.+.....+.            +    .-+..|..|+.+|+++.|
T Consensus       730 nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~t------------s----aCQfTY~aHkk~i~~igf  792 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGT------------S----ACQFTYQAHKKPIHDIGF  792 (1034)
T ss_pred             cccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCcccc------------c----eeeeEhhhccCcccceee
Confidence            478999888887633 55678999999999999998653211110            0    012357889999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCC--ccceEEEEEcCCCCCCEEEE-EeCCCcEEEEECCCceeEEEE
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAH--TEWVSCVRFSPNTLQPTIVS-ASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      -.+.++++++  |+.|.+||..-. ...++.....+  ...|.|+   ++.....++. ++...+|+++|.+......++
T Consensus       793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~  867 (1034)
T KOG4190|consen  793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCEL  867 (1034)
T ss_pred             eeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeE
Confidence            9999888765  678999996322 11112111111  2234444   4322233444 477899999999887765554


Q ss_pred             c-----CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118          166 A-----GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       166 ~-----~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  207 (303)
                      +     +.+.-+.+++..|.|+.++.+-..|.+.+.|.++|+.+..+
T Consensus       868 kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  868 KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            3     23455789999999999999999999999999999877654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=5e-10  Score=97.97  Aligned_cols=197  Identities=18%  Similarity=0.218  Sum_probs=116.8

Q ss_pred             cccccceeeeecCCCCCcEEEEecCC---CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRD---KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+.+.+...+|+|++. .|+..+.+   ..|.+||+..+...      .+                  ....+.+....
T Consensus       192 ~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~------~l------------------~~~~g~~~~~~  246 (427)
T PRK02889        192 LSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRR------VV------------------ANFKGSNSAPA  246 (427)
T ss_pred             ccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEE------Ee------------------ecCCCCccceE
Confidence            45667788899999864 56655432   35888988643211      00                  11123345788


Q ss_pred             EeeCCCEEE-EEeCCCcEEEEec--CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC--CCceeEE
Q 048118           89 FSIDNRQIV-SASRDRTIKLWNT--LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKLRA  163 (303)
Q Consensus        89 ~~~~~~~l~-t~~~d~~i~vw~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~--~~~~~~~  163 (303)
                      |+|+|+.++ +.+.++...||..  .+.....+.   .+........|+|++.. .+++...++...+|.+  .+++...
T Consensus       247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        247 WSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT---QSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCcEECC---CCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEE
Confidence            999998776 5677888777754  322222221   12223456789998742 3334444566666654  4443322


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCC---eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--CC--cEEEE
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDG---VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--EQ--SIKIW  236 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iw  236 (303)
                       +...........|+|+|++++..+.++   .|.+||+.+++.. .+..........|+|++..++.+.  .+  .+++.
T Consensus       323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence             221223344678999999998776554   6999999877643 333233346778999987665543  22  35666


Q ss_pred             eCC
Q 048118          237 DLE  239 (303)
Q Consensus       237 d~~  239 (303)
                      ++.
T Consensus       401 ~~~  403 (427)
T PRK02889        401 SSD  403 (427)
T ss_pred             ECC
Confidence            653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=2.4e-11  Score=115.02  Aligned_cols=197  Identities=20%  Similarity=0.342  Sum_probs=140.6

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      +-+.|.++.-+|.. .+-+||+.||.+++|......+               |.+.      +..|. ..|+.+.|+.+|
T Consensus      2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~---------------v~~~------rt~g~-s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQ---------------VVCF------RTAGN-SRVTRSRFNHQG 2263 (2439)
T ss_pred             ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCe---------------EEEe------eccCc-chhhhhhhcccC
Confidence            33556777777765 4789999999999998753221               1111      11233 678899999999


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE---eCCCcEEEEECCCce-eEEEEcCCC
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA---SWDRTVKVWNLSNCK-LRATLAGHT  169 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~dg~i~iwd~~~~~-~~~~~~~~~  169 (303)
                      ..+..+..||.+.+|.....   .......|+.......|--.    .++++   ..++.+.+||..... ....-..|.
T Consensus      2264 nk~~i~d~dg~l~l~q~~pk---~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2264 NKFGIVDGDGDLSLWQASPK---PYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             CceeeeccCCceeecccCCc---ceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceeeeecC
Confidence            99999999999999997532   22233456666666666432    24443   346889999964321 111126799


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      +.++++++-|..+.|++|+.+|.|++||++..+.+++++.        +.....++..+..|.|+||++....++....
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCc
Confidence            9999999999999999999999999999998888777664        3334566677789999999998776665443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.1e-09  Score=93.36  Aligned_cols=162  Identities=17%  Similarity=0.130  Sum_probs=103.1

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TV  151 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i  151 (303)
                      +..+...+....|+|+|+.|+..+.+   ..|.+|++.+.....+...   ...+....|+|++.. .+++...+|  .|
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~SpDG~~-la~~~~~~g~~~I  269 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWSPDGSK-LAFVLSKDGNPEI  269 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence            34566678889999999988776643   3577888765433322221   122446889998732 333444454  58


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (303)
                      .++|+.+++.. .+..+........|+|+|+.++..+. ++  .|.++|+.+++...............|+|++..++..
T Consensus       270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence            88899877654 34445556677899999998776654 33  6777888776643222222233456899998777655


Q ss_pred             c--CC--cEEEEeCCCCce
Q 048118          229 T--EQ--SIKIWDLESKSI  243 (303)
Q Consensus       229 ~--~~--~i~iwd~~~~~~  243 (303)
                      .  ++  .|++||+.+++.
T Consensus       349 ~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             EccCCceEEEEEECCCCCE
Confidence            3  22  588999887653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=7.1e-11  Score=106.57  Aligned_cols=145  Identities=29%  Similarity=0.453  Sum_probs=117.9

Q ss_pred             CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEE
Q 048118           27 NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIK  106 (303)
Q Consensus        27 ~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~  106 (303)
                      .+-++++|+.-+.|.+|+....++.                       ..+.+|++.|.++.++.+|+++++++.|.++|
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p-----------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiR  200 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKP-----------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIR  200 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCc-----------------------ceecccCCceEEEEEccCCcEEEEEecCccee
Confidence            4578999999999999987632210                       14578999999999999999999999999999


Q ss_pred             EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-CCeeEEEECCCCCEEE
Q 048118          107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVNTVAVSPDGSLCA  185 (303)
Q Consensus       107 vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~  185 (303)
                      +|++.+.+... -..-.|+..+..++|+|+    .+++++.|-+.++|+.+..+ ..++.+|. ..+..++..++....+
T Consensus       201 lW~i~s~~~~~-~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~v  274 (967)
T KOG0974|consen  201 LWPIDSREVLG-CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKV  274 (967)
T ss_pred             eeecccccccC-cccccccceeEEEEeccc----eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEE
Confidence            99986543322 123468889999999986    69999999999999875444 44777776 4689999999888899


Q ss_pred             EEeCCCeEEEEeCCC
Q 048118          186 SGGKDGVILLWDLAE  200 (303)
Q Consensus       186 ~~~~d~~v~iwd~~~  200 (303)
                      +++.|+.+++|++..
T Consensus       275 T~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  275 TGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeccCcchhhhhhhc
Confidence            999999999999854

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=6.7e-11  Score=98.61  Aligned_cols=249  Identities=16%  Similarity=0.192  Sum_probs=165.3

Q ss_pred             ccccccceeeeecCC-CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           11 MRAHTDMVTAIATPI-DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~-~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      --+|...|....|-| .+...+++++.||.+++=.+.......                    ....+..|.++|+.++.
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e--------------------~t~rl~~h~g~vhklav  240 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE--------------------NTKRLAPHEGPVHKLAV  240 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee--------------------cceecccccCccceeee
Confidence            346777787776766 345789999999999987664321110                    01234568999999999


Q ss_pred             eeCC-CEEEEEeCCCcEEEEecCCce-eeeeecCCCCcc---ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee---
Q 048118           90 SIDN-RQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTE---WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL---  161 (303)
Q Consensus        90 ~~~~-~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~---  161 (303)
                      -|+. .-|.+++.|+.+.-.|+.... ...+.....+..   ....++.+|... ..+++++.|..+++||.+.-..   
T Consensus       241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~  319 (559)
T KOG1334|consen  241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN  319 (559)
T ss_pred             cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc
Confidence            9875 569999999999988864321 111111112222   457788888653 4789999999999999754221   


Q ss_pred             ---EEEEcC------CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------eEEE-ec---CCCeEEEE
Q 048118          162 ---RATLAG------HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------------RLYS-LD---AGAVIHAL  216 (303)
Q Consensus       162 ---~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------~~~~-~~---~~~~v~~~  216 (303)
                         +.++..      ..-.|++++++.++.-|+++-.|-.|++++-.-+.            .+.. +.   ....|..+
T Consensus       320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV  399 (559)
T KOG1334|consen  320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV  399 (559)
T ss_pred             cchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence               122221      12358999999877777777778889998532211            1111 11   11246666


Q ss_pred             EE-cCCCeEEEEEcC-CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118          217 CF-SPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       217 ~~-s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      -| -|...++++++| |.|.||+-.+++++.-++-                    ....|++|.-+|--+.||+++-|.-
T Consensus       400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg--------------------Dr~VVNCLEpHP~~PvLAsSGid~D  459 (559)
T KOG1334|consen  400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG--------------------DRHVVNCLEPHPHLPVLASSGIDHD  459 (559)
T ss_pred             eeccCccceEEecCccceEEEEecchhHHHHHhhc--------------------ccceEeccCCCCCCchhhccCCccc
Confidence            55 455566666654 8999999998887654432                    2336788888999999999999999


Q ss_pred             EEEEec
Q 048118          295 IRVWGI  300 (303)
Q Consensus       295 v~~w~~  300 (303)
                      |+||-.
T Consensus       460 VKIWTP  465 (559)
T KOG1334|consen  460 VKIWTP  465 (559)
T ss_pred             eeeecC
Confidence            999954

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.28  E-value=1.1e-09  Score=93.37  Aligned_cols=204  Identities=18%  Similarity=0.210  Sum_probs=139.9

Q ss_pred             CCCcEEEEecCCCcEEEEEcccCccccce-eeeeecCCCcceEEEEeC--CCCceecccCCEEEEE----EeeCCCEEEE
Q 048118           26 DNSDMIVTASRDKSIIVWHLTKEEKTYGV-ARRRLTGHSHFVQDVVLS--SDGQFVGHTKDVLSVA----FSIDNRQIVS   98 (303)
Q Consensus        26 ~~~~~~~t~s~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~~~~h~~~i~~i~----~~~~~~~l~t   98 (303)
                      +...+||....||.+|+|+.+.+.....+ +.+.+.   +.-.++.|.  .+...    -...+..    -+.+...++-
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s---~t~~~~~w~L~~~~s~----~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS---GTCTYTKWGLSADYSP----MKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhcc---CcceeEEEEEEeccch----HHHHhHHHHhhccCCceEEEe
Confidence            34579999999999999998765422111 111111   111111111  00000    0000110    1223446778


Q ss_pred             EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEEC
Q 048118           99 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS  178 (303)
Q Consensus        99 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~  178 (303)
                      |..-|.|.+|+..+.........+.|.+.|.++.++.+-  ..+.+++.|..+..|+....+....+...+..+.+++++
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence            888899999998765554444556788889999888764  478899999999999999998888888888889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCC-----Ce-EEEEE-cCCcEEEEeCCC
Q 048118          179 PDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPN-----RY-WLCAA-TEQSIKIWDLES  240 (303)
Q Consensus       179 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~-----~~-~l~~~-~~~~i~iwd~~~  240 (303)
                      ||+..+++++  ++|++||+++++.+.+|.. .++|++++|-..     |. +|.+. .+.-|.+|-++.
T Consensus       154 ~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  154 PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999999886  5899999999999988864 678999988665     43 44332 345577776654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.27  E-value=7.8e-10  Score=101.72  Aligned_cols=168  Identities=20%  Similarity=0.265  Sum_probs=113.6

Q ss_pred             ecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceee-----eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           78 VGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKY-----TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      ..|+..+..++.++.. .+|+||+.||+||+|+...-...     ...........+.++.+-+.+  ..++.++.||.|
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--DQFAVSTKDGSV 1122 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--CeEEEEcCCCeE
Confidence            3577788888888765 99999999999999997432111     111111234456777776665  358888999999


Q ss_pred             EEEECCCce-------eEEEEcCC-CCCeeEE-EECC-CCC-EEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEE
Q 048118          152 KVWNLSNCK-------LRATLAGH-TGYVNTV-AVSP-DGS-LCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALC  217 (303)
Q Consensus       152 ~iwd~~~~~-------~~~~~~~~-~~~i~~~-~~~~-~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~  217 (303)
                      ++.++.-..       .......+ .+.+.++ ++.. .+. .++.+..-+.|..||.+....+++.+   ..+.|.+++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            999885411       11111112 2333333 3333 223 56777788999999999877666553   346899999


Q ss_pred             EcCCCeEEEEEc-CCcEEEEeCCCCceeeee
Q 048118          218 FSPNRYWLCAAT-EQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       218 ~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~  247 (303)
                      .+|.+.|++.++ .|.+-+||+|-+..+...
T Consensus      1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred             ecCCceEEEEecCCceEEEEEeecCceeecc
Confidence            999999998775 789999999877665443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=7.1e-09  Score=91.15  Aligned_cols=159  Identities=20%  Similarity=0.201  Sum_probs=97.7

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeC-CC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc--EEEE
Q 048118           80 HTKDVLSVAFSIDNRQIVSASR-DR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT--VKVW  154 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~--i~iw  154 (303)
                      +...+....|+|+|+.++..+. ++  .|.+||+.+.....+....   .......|+|++. ..+++.+.++.  |.++
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~-~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGK-KLALVLSKDGQPEIYVV  291 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCC-EEEEEEeCCCCeEEEEE
Confidence            3446678899999998876654 33  4777787543322222211   1234678999874 23444566665  7777


Q ss_pred             ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--
Q 048118          155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--  229 (303)
Q Consensus       155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  229 (303)
                      |+.+++.. .+..+........|+|+|+.|+..+. ++  .|.++|+.+++..............+|+|++..++...  
T Consensus       292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~  370 (448)
T PRK04792        292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT  370 (448)
T ss_pred             ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence            88776643 34444556677899999998876653 33  56667887665432211222234568999987665543  


Q ss_pred             CC--cEEEEeCCCCce
Q 048118          230 EQ--SIKIWDLESKSI  243 (303)
Q Consensus       230 ~~--~i~iwd~~~~~~  243 (303)
                      ++  .|+++|+.+++.
T Consensus       371 ~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        371 NGKFNIARQDLETGAM  386 (448)
T ss_pred             CCceEEEEEECCCCCe
Confidence            23  567778877653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.23  E-value=3.3e-11  Score=99.87  Aligned_cols=193  Identities=15%  Similarity=0.192  Sum_probs=144.0

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      ..+.+.+..+|.+++.|+.-|+|-.+|........-.   .-.+.|..+.|-.+.   .+++......++|||-. +...
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~v~Etv~Dv~~LHne---q~~AVAQK~y~yvYD~~-GtEl  203 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---NVMETVRDVTFLHNE---QFFAVAQKKYVYVYDNN-GTEL  203 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeee---ehhhhhhhhhhhcch---HHHHhhhhceEEEecCC-CcEE
Confidence            3467899999999999999999999987543222111   123457778886653   34556788999999964 4444


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSIKIWDLES  240 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  240 (303)
                      .-++.| ..|..+.|-|-.-+|++++..|.++.-|+..|+.+..+.. ...+..++-+|-.-++..+ +.|.|.+|....
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            445543 5788899999888889999999999999999998877754 3466677778876666544 689999998766


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                      .+.+-.                    +-.|...+.++++.++|.|++|.+.|..++|||+-.|
T Consensus       283 kePLvK--------------------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  283 KEPLVK--------------------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             cchHHH--------------------HHhcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence            544322                    2234556788999999999999999999999998543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=4.9e-09  Score=89.61  Aligned_cols=189  Identities=19%  Similarity=0.250  Sum_probs=131.3

Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCC-ccceEEEEE------cCC------------CCCCEEEEEeCCCcE
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAH-TEWVSCVRF------SPN------------TLQPTIVSASWDRTV  151 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~i~~~~~------~~~------------~~~~~~~~~~~dg~i  151 (303)
                      |...++|....||.+|+|+...+...+-.....+ ++.-.+..|      +|.            .....++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456899999999999999765433221100001 111122222      221            112356778889999


Q ss_pred             EEEECCCceeEEEEc--CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE
Q 048118          152 KVWNLSNCKLRATLA--GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~  228 (303)
                      .+|+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|++...+.+..+.. ...+.+++.+||+..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999999887775  5889999999998888999999999999999999888777654 4578899999998776655


Q ss_pred             cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-----CCEEE-EeecCCeEEEEec
Q 048118          229 TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-----GSTLF-SGYTDGVIRVWGI  300 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~~l~-~gs~Dg~v~~w~~  300 (303)
                      + ++|.+||+++++++...                    .+|...+..+.|...     |.+++ +...+.-+.+|-+
T Consensus       163 s-~~ik~~~~~~kevv~~f--------------------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  163 S-RQIKVLDIETKEVVITF--------------------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             c-ceEEEEEccCceEEEEe--------------------cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            4 69999999999887654                    334444555665544     55544 4445555666644

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.18  E-value=8.4e-09  Score=87.95  Aligned_cols=108  Identities=21%  Similarity=0.295  Sum_probs=83.5

Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN  221 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~  221 (303)
                      +++-..++.|.+.|..+.+...++......-..+.++|||+++.+++.||.|.++|+.+++.+.++..+.....+++|+|
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            34556789999999999998888876544445578999999999999999999999999999999998888999999999


Q ss_pred             CeEEEEE--cCCcEEEEeCCCCceeeeeee
Q 048118          222 RYWLCAA--TEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       222 ~~~l~~~--~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      |.+++++  ..+.+.++|.++.+.++.+..
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             CCEEEEEecCCCceeEeccccccceeeccc
Confidence            9877665  479999999999888877653

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-08  Score=86.21  Aligned_cols=127  Identities=21%  Similarity=0.413  Sum_probs=91.8

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE--eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG--GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (303)
                      .++++.+.++..+...+. ..++|.++.|+|+++.|+++  --=..+.++|++ +.++..+. ..+-+++-|+|.|.+++
T Consensus       251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEE
Confidence            357777776444444443 36899999999999887654  235688999986 45555554 45667788999998776


Q ss_pred             EEc----CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec------CCeEE
Q 048118          227 AAT----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT------DGVIR  296 (303)
Q Consensus       227 ~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~------Dg~v~  296 (303)
                      .+.    .|.|.+||+.+.+++...+..                      ..+-..|+|||.+++|+..      |+.++
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i~~~~a~----------------------~tt~~eW~PdGe~flTATTaPRlrvdNg~K  385 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLIAKFKAA----------------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIK  385 (566)
T ss_pred             EeecCCCCCceEEEeccchhhccccccC----------------------CceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence            553    478999999988777654321                      1244789999999998865      78889


Q ss_pred             EEec
Q 048118          297 VWGI  300 (303)
Q Consensus       297 ~w~~  300 (303)
                      +|+.
T Consensus       386 iwhy  389 (566)
T KOG2315|consen  386 IWHY  389 (566)
T ss_pred             EEEe
Confidence            9976

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.17  E-value=2.4e-07  Score=79.15  Aligned_cols=190  Identities=19%  Similarity=0.189  Sum_probs=118.3

Q ss_pred             EEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEec
Q 048118           31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT  110 (303)
Q Consensus        31 ~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~  110 (303)
                      +++-..++.|.+.|....+..     ..+                  ......-..+.++|+|+++++++.|+.|.++|+
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~-----~~i------------------~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~   65 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVV-----ARI------------------PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDL   65 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEE-----EEE------------------E-STTEEEEEE-TT-SSEEEEEETTSEEEEEET
T ss_pred             EEEecCCCEEEEEECCCCeEE-----EEE------------------cCCCCceeEEEecCCCCEEEEEcCCCeEEEEEC
Confidence            356677899999997653321     111                  111111234678999999999999999999998


Q ss_pred             CCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC-------CCCeeEEEECCCCC
Q 048118          111 LGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH-------TGYVNTVAVSPDGS  182 (303)
Q Consensus       111 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~  182 (303)
                      ...... .+..   . ....++++++++. ..+++....+.+.++|.++.+.+..+...       ...+..+..+|...
T Consensus        66 ~~~~~v~~i~~---G-~~~~~i~~s~DG~-~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   66 ATGKVVATIKV---G-GNPRGIAVSPDGK-YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             TSSSEEEEEE----S-SEEEEEEE--TTT-EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             CcccEEEEEec---C-CCcceEEEcCCCC-EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence            654332 2222   1 2357799999873 23445567899999999998887766432       34577788888888


Q ss_pred             EEEEEeC-CCeEEEEeCCCCceE--EEecCCCeEEEEEEcCCCeEEEE--EcCCcEEEEeCCCCceeeeee
Q 048118          183 LCASGGK-DGVILLWDLAEGKRL--YSLDAGAVIHALCFSPNRYWLCA--ATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       183 ~l~~~~~-d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~--~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      .++..-. .+.|-+.|......+  ..+..+.......|+|++.++.+  ...+.|-++|.++++++..+.
T Consensus       141 ~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  141 EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            6666655 488888887655433  44556677888999999855433  346789999999887775543

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.14  E-value=2.4e-08  Score=87.46  Aligned_cols=171  Identities=22%  Similarity=0.280  Sum_probs=106.0

Q ss_pred             cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECCCceeEEEEcCCCCCeeEEEECCC
Q 048118          104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD  180 (303)
Q Consensus       104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  180 (303)
                      .|.++|..+.....+.   .+...+...+|+|++.  .++....+   ..|++||+.+++... +..+.+.+..++|+|+
T Consensus       171 ~l~~~d~~g~~~~~l~---~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGANPQTIT---RSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCCCCEEee---cCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence            4667776443222222   1334577788999873  45554433   479999998775433 3334556677899999


Q ss_pred             CCEEEE-EeCCC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC----CcEEEEeCCCCceeeeeeecccc
Q 048118          181 GSLCAS-GGKDG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE----QSIKIWDLESKSIVEDLKVDLKT  253 (303)
Q Consensus       181 ~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~  253 (303)
                      ++.|+. .+.++  .|.+||+.+++...............|+|++..++..++    ..|+++|+++++... +..    
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~----  319 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF----  319 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec----
Confidence            987764 44444  588899887654322222233445689999876654432    268888887654321 110    


Q ss_pred             ccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC---eEEEEecc
Q 048118          254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG---VIRVWGIG  301 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg---~v~~w~~~  301 (303)
                                      .........|+|++++|+.++.++   .|.+||+.
T Consensus       320 ----------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       320 ----------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             ----------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence                            011224568999999999888776   77788764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.1e-09  Score=90.82  Aligned_cols=215  Identities=18%  Similarity=0.181  Sum_probs=144.2

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      -.|++.|+.+...  ..+++++++.||.+++|.-...+   +..             ++    ..+.+|.+.|.+++.+.
T Consensus         6 ymhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---GvE-------------fV----KhFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    6 YMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---GVE-------------FV----KHFRAHLGVILSLAVSY   63 (558)
T ss_pred             hcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---cee-------------eh----hhhHHHHHHHHhhhccc
Confidence            4699999998654  45799999999999999653211   000             00    24667889999999999


Q ss_pred             CCCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEE-EEEeCCCcEEEEECCCce--eEEEEcC
Q 048118           92 DNRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCK--LRATLAG  167 (303)
Q Consensus        92 ~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~dg~i~iwd~~~~~--~~~~~~~  167 (303)
                      ++-++.|.+. |+.++++|+..-..........-...+ +...+|......+ ++.-.++.+.++|-....  ....-.-
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl  142 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL  142 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence            9999999777 999999997532211111101011111 2222333211223 334457889999976543  2333345


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC------CceEEEe----------cCCCeEEEEEEcCCCeEE-EEEcC
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE------GKRLYSL----------DAGAVIHALCFSPNRYWL-CAATE  230 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~------~~~~~~~----------~~~~~v~~~~~s~~~~~l-~~~~~  230 (303)
                      |..+|..+.++|.+..+++....|.|.-|....      .+.....          .......++.|+|++..+ ..+.|
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            889999999999999999988899999998863      1111111          123456789999998655 45678


Q ss_pred             CcEEEEeCCCCceeeeeee
Q 048118          231 QSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~  249 (303)
                      ..|++++.++++++..+..
T Consensus       223 rkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  223 RKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cEEEEEEeccchhhhhhhc
Confidence            9999999999998877654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.12  E-value=7.8e-07  Score=75.77  Aligned_cols=205  Identities=15%  Similarity=0.198  Sum_probs=122.6

Q ss_pred             CEEEEEEeeCCCEEEEEeC----CCcEEEEecCCc--eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           83 DVLSVAFSIDNRQIVSASR----DRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~----d~~i~vw~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      ...-++++|++++|.+...    ++.|..|++..+  ....+............++++|++. ..+++.-.+|.|.++++
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEc
Confidence            3445788999998888876    468888876543  1111111111122345688888862 23444446899999999


Q ss_pred             CC-ceeEEE---Ec----------CCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCCc--e----EEEecCCCeEEE
Q 048118          157 SN-CKLRAT---LA----------GHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLAEGK--R----LYSLDAGAVIHA  215 (303)
Q Consensus       157 ~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~--~----~~~~~~~~~v~~  215 (303)
                      .. +.+...   +.          .......++.++|+++++++... ...|.+|++....  .    ...+..+...+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            76 333221   21          11234678999999998877643 4589999987654  2    113455677889


Q ss_pred             EEEcCCCeEEEEE--cCCcEEEEeCC--CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-
Q 048118          216 LCFSPNRYWLCAA--TEQSIKIWDLE--SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-  290 (303)
Q Consensus       216 ~~~s~~~~~l~~~--~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-  290 (303)
                      ++|+|++.++.+.  .++.|.+|++.  .+.+...-.+...+..           .. .......+.++|||++|.++. 
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-----------~~-~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-----------FT-GENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-----------SC-SSSSEEEEEE-TTSSEEEEEEC
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-----------cc-ccCCceeEEEecCCCEEEEEec
Confidence            9999998766544  36789999887  4432221111111100           00 012456789999999877654 


Q ss_pred             cCCeEEEEec
Q 048118          291 TDGVIRVWGI  300 (303)
Q Consensus       291 ~Dg~v~~w~~  300 (303)
                      .++.|.+|++
T Consensus       265 ~~~sI~vf~~  274 (345)
T PF10282_consen  265 GSNSISVFDL  274 (345)
T ss_dssp             TTTEEEEEEE
T ss_pred             cCCEEEEEEE
Confidence            6778999988

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.11  E-value=4.5e-09  Score=83.40  Aligned_cols=263  Identities=18%  Similarity=0.354  Sum_probs=157.8

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeee---eecCCCcceEEEEeCCCCcee---cccCCEEEEE
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARR---RLTGHSHFVQDVVLSSDGQFV---GHTKDVLSVA   88 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~---~h~~~i~~i~   88 (303)
                      .+.|++|-|.-. +.|++||...|-+.+|.....   ++....   .+++|..         +..|.   .-...|+.|.
T Consensus        26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s---~~ceykf~teFQshe~---------EFDYLkSleieEKin~I~   92 (460)
T COG5170          26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKS---YGCEYKFFTEFQSHEL---------EFDYLKSLEIEEKINAIE   92 (460)
T ss_pred             cceeeEEEeccc-cceEeecCCCceEEEeecccc---cccchhhhhhhccccc---------chhhhhhccHHHHhhhee
Confidence            367999999854 579999999999999976432   222221   1222221         11111   1234588898


Q ss_pred             EeeCCC--EEEEEeCCCcEEEEecCCceee--------------------e---------------e------ecCCCCc
Q 048118           89 FSIDNR--QIVSASRDRTIKLWNTLGECKY--------------------T---------------I------QEGDAHT  125 (303)
Q Consensus        89 ~~~~~~--~l~t~~~d~~i~vw~~~~~~~~--------------------~---------------~------~~~~~~~  125 (303)
                      |..++.  .++..+.|++|++|.+.....+                    .               +      .....|.
T Consensus        93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170          93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence            887653  5777889999999975211000                    0               0      0112455


Q ss_pred             cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcCCC-----CCeeEEEECCC-CCEEEEEeCCCeEEEE
Q 048118          126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAGHT-----GYVNTVAVSPD-GSLCASGGKDGVILLW  196 (303)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~v~iw  196 (303)
                      .-|.++.++.+.  ..++ ...|-.|.+|.+.--.   ....++.|+     .-|++..|+|. ...+.-.+..|.|++.
T Consensus       173 yhiNSiS~NsD~--et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         173 YHINSISFNSDK--ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             eEeeeeeecCch--heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            557778887653  2344 4566778889875321   122233443     45788899994 4577777889999999


Q ss_pred             eCCCCc------eEEE--ec---------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccc
Q 048118          197 DLAEGK------RLYS--LD---------AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKS  258 (303)
Q Consensus       197 d~~~~~------~~~~--~~---------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~  258 (303)
                      |++...      .+..  ++         .-..|..+.|++.|.++++-.--++.+||.+..+ .++.+.++.....+..
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~  329 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELN  329 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHH
Confidence            998432      1111  11         1246888999999999998888999999987543 2333332211100000


Q ss_pred             cCccceeecccccee-EEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          259 EATTATTTIKKKNIY-CTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       259 ~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      ..      .....++ -..+.||.|.+.+++||..+..-+|.
T Consensus       330 d~------YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         330 DV------YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hh------hhccceeeeEEEEecCCcccccccccccceeeec
Confidence            00      0000111 13578899999999999988877775

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=5.3e-07  Score=86.84  Aligned_cols=262  Identities=15%  Similarity=0.172  Sum_probs=149.8

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-ecccCCEEEEEEeeCCCEEEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-VGHTKDVLSVAFSIDNRQIVS   98 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~l~t   98 (303)
                      .+++++.+++++++-+.++.|++|+..... ..  .... .+....       .++.+ .++-.....+++++++..|+.
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~--~ig~-~g~~G~-------~dG~~~~a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IV--QIGS-TGEEGL-------RDGSFEDATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EE--EEcc-CCCcCC-------CCCchhccccCCCcEEEEeCCCCEEEE
Confidence            466666556688888888889999864211 00  0000 000000       01111 112234678999998876555


Q ss_pred             Ee-CCCcEEEEecCCceeeeeecC-------CCC-------ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           99 AS-RDRTIKLWNTLGECKYTIQEG-------DAH-------TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        99 ~~-~d~~i~vw~~~~~~~~~~~~~-------~~~-------~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      +. ..+.|+++|..+.....+...       ...       -.....++++|+. ...+++...++.|++||..++... 
T Consensus       641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~v~-  718 (1057)
T PLN02919        641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGVTR-  718 (1057)
T ss_pred             EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCeEE-
Confidence            54 446788888754432222110       000       0123578898853 235667777889999998766532 


Q ss_pred             EEcC---------C------CCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCCceEEE-------------ec-C----
Q 048118          164 TLAG---------H------TGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEGKRLYS-------------LD-A----  209 (303)
Q Consensus       164 ~~~~---------~------~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~-------------~~-~----  209 (303)
                      .+.+         +      -.....++++|+++. +++-+.+++|++||+.++.....             +. .    
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            1211         0      123456999999884 45566789999999986542110             00 0    


Q ss_pred             ----CCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC
Q 048118          210 ----GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS  284 (303)
Q Consensus       210 ----~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  284 (303)
                          ......++++++|.+++ -..++.|++||.+++.+......  ...... +..    ...........++++++|+
T Consensus       799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~-dG~----~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFK-DGK----ALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCC-CCc----ccccccCCceEEEEeCCCC
Confidence                01235788899886544 44578999999987765432110  000000 000    0111122346788999999


Q ss_pred             EEEEeecCCeEEEEecc
Q 048118          285 TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       285 ~l~~gs~Dg~v~~w~~~  301 (303)
                      .+++-+.+++|++||+.
T Consensus       872 lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        872 LFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             EEEEECCCCEEEEEECC
Confidence            99999999999999984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=4.7e-08  Score=85.41  Aligned_cols=195  Identities=16%  Similarity=0.129  Sum_probs=107.6

Q ss_pred             cCCEEEEEEeeCCCE--E-EEEeCCCc--EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC----CCcE
Q 048118           81 TKDVLSVAFSIDNRQ--I-VSASRDRT--IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW----DRTV  151 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~--l-~t~~~d~~--i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----dg~i  151 (303)
                      ...+..=.|+|+|+.  + ++...++.  |.+.++.+.....+.....   .....+|+|++.. .+++...    +-.+
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~-Laf~s~~~g~~di~~  259 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKL-LAFISDRYGNPDLFI  259 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCE-EEEEECCCCCcceeE
Confidence            334555689999874  2 24444544  4445665443333332222   2345789999843 2333322    3334


Q ss_pred             EEEECCCc---eeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEE--eCCC-CceEEEec-CCCeEEEEEEcCCCe
Q 048118          152 KVWNLSNC---KLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLW--DLAE-GKRLYSLD-AGAVIHALCFSPNRY  223 (303)
Q Consensus       152 ~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~-~~~~v~~~~~s~~~~  223 (303)
                      ..|++..+   +.........+.....+|+|||+.|+..+ .+|..++|  ++.. +.....+. ....+....|+|+|.
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence            45676542   33332323234456789999999887665 46655555  4432 22222232 223556788999998


Q ss_pred             EEEEEc----CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE-eec--CCeEE
Q 048118          224 WLCAAT----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS-GYT--DGVIR  296 (303)
Q Consensus       224 ~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-gs~--Dg~v~  296 (303)
                      .++...    ...|++||+.+++... +..                    .........|+|||++|+. +..  ...+.
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~--------------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQ-LTT--------------------SPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEE-ccC--------------------CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            776543    2469999998775422 110                    0011234679999997764 333  34566


Q ss_pred             EEec
Q 048118          297 VWGI  300 (303)
Q Consensus       297 ~w~~  300 (303)
                      ++++
T Consensus       399 ~vdl  402 (428)
T PRK01029        399 LISL  402 (428)
T ss_pred             EEEC
Confidence            6665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=8.8e-08  Score=81.69  Aligned_cols=113  Identities=25%  Similarity=0.382  Sum_probs=87.7

Q ss_pred             CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCC
Q 048118          124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAE  200 (303)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~  200 (303)
                      ..++|.++.|+|++.+..++.|-.=..+-|||++ +.++..+.  .++=+.+-|+|.|++++.++-   .|.+-+||+.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            4678999999999877677778778889999985 44555443  466678999999999887764   58999999999


Q ss_pred             CceEEEecCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCC
Q 048118          201 GKRLYSLDAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLES  240 (303)
Q Consensus       201 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~  240 (303)
                      .+.+..+...... -+.|+|||.++.+++       |+.++||+...
T Consensus       346 ~K~i~~~~a~~tt-~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  346 RKLIAKFKAANTT-VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             hhhccccccCCce-EEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            8888777654443 368999997765543       78899999853

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.08  E-value=7.7e-07  Score=74.63  Aligned_cols=249  Identities=13%  Similarity=0.123  Sum_probs=136.8

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEec---------CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTAS---------RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   76 (303)
                      .+++++.....+- .+ ++|++..+.++.+         .+..|.+||.+..+...               ++.+.++-+
T Consensus        38 ~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~---------------~i~~p~~p~  100 (352)
T TIGR02658        38 RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA---------------DIELPEGPR  100 (352)
T ss_pred             EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe---------------EEccCCCch
Confidence            4444444333232 23 7888777777777         78999999997654321               111111101


Q ss_pred             eecccCCEEEEEEeeCCCEEEEEe-C-CCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSAS-R-DRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~-~-d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      +. .......++++|+|++++... . +..|.+.|+....... +....    ...-...+..    .+..-+.||....
T Consensus       101 ~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~----~~~~~~~Dg~~~~  171 (352)
T TIGR02658       101 FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTAND----TFFMHCRDGSLAK  171 (352)
T ss_pred             hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCC----ccEEEeecCceEE
Confidence            11 011234678999999888765 3 6889999986543221 11100    0011111111    1223345555555


Q ss_pred             EECCC-ceeE-EE---EcCCCCCeeE-EEECC-CCCEEEEEeCCCeEEEEeCCCCc-----eEEEecC--------CCeE
Q 048118          154 WNLSN-CKLR-AT---LAGHTGYVNT-VAVSP-DGSLCASGGKDGVILLWDLAEGK-----RLYSLDA--------GAVI  213 (303)
Q Consensus       154 wd~~~-~~~~-~~---~~~~~~~i~~-~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~--------~~~v  213 (303)
                      ..+.+ ++.. ..   +..-..++.. -.+.+ +|+++.+..+ |+|.+.|+....     .+..+..        ...+
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence            43322 2211 11   1110111100 03455 7777766665 999999964432     2222211        1223


Q ss_pred             EEEEEcCCCeEEEEEc-----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118          214 HALCFSPNRYWLCAAT-----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD  282 (303)
Q Consensus       214 ~~~~~s~~~~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  282 (303)
                      ..+++++++..+.+..           .+.|.++|.++++.+..+.+.                     ..+..++++||
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---------------------~~~~~iavS~D  309 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---------------------HEIDSINVSQD  309 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---------------------CceeeEEECCC
Confidence            4489999976555422           257999999999988766531                     13467999999


Q ss_pred             CC-EEEEee-cCCeEEEEeccc
Q 048118          283 GS-TLFSGY-TDGVIRVWGIGR  302 (303)
Q Consensus       283 ~~-~l~~gs-~Dg~v~~w~~~~  302 (303)
                      ++ +|.+.+ .++.|.+.|+..
T Consensus       310 gkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       310 AKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CCeEEEEeCCCCCcEEEEECcC
Confidence            99 887666 689999999753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=7.8e-08  Score=84.01  Aligned_cols=157  Identities=17%  Similarity=0.128  Sum_probs=92.9

Q ss_pred             CEEEEEEeeCCCEEEEEeC-CC----cEEEEecCCc---eeeeeecCCCCccceEEEEEcCCCCCCEEEE-EeCCCcEEE
Q 048118           83 DVLSVAFSIDNRQIVSASR-DR----TIKLWNTLGE---CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS-ASWDRTVKV  153 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~-d~----~i~vw~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~dg~i~i  153 (303)
                      .....+|+|||+.|+..+. ++    .+.+|+....   ....+..  .........+|+|++.  .++. ...+|..++
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~l  307 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGT--RLVFVSNKDGRPRI  307 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec--CCCCCcCCeEECCCCC--EEEEEECCCCCceE
Confidence            3345789999988776543 22    3344654321   1111111  1112234578999974  3443 345665555


Q ss_pred             E--ECCC-ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE
Q 048118          154 W--NLSN-CKLRATLAGHTGYVNTVAVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA  227 (303)
Q Consensus       154 w--d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (303)
                      |  ++.. +.....+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++..........+....|+|++..++.
T Consensus       308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEE
Confidence            5  4432 22233344444567788999999988776543   4789999988765432222335667899999876654


Q ss_pred             E-c---CCcEEEEeCCCCce
Q 048118          228 A-T---EQSIKIWDLESKSI  243 (303)
Q Consensus       228 ~-~---~~~i~iwd~~~~~~  243 (303)
                      . .   ...|+++|+.+++.
T Consensus       388 ~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        388 SAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EECCCCCceEEEEECCCCCE
Confidence            3 2   35689999877654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=2.5e-09  Score=101.90  Aligned_cols=186  Identities=15%  Similarity=0.253  Sum_probs=135.3

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      +-..|.++.-+|...+.+||+.||.+++|............. ..+..+..+.|+.++  +.+..+..||.+.+|... .
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~s~vtr~~f~~qG--nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGNSRVTRSRFNHQG--NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCcchhhhhhhcccC--CceeeeccCCceeecccC-C
Confidence            445678888889888999999999999998643322222222 223667778888776  567888899999999986 5


Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCCCc---eEEEecCCCeEEEEEEcCCCeEE-EEEcCCc
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASGG---KDGVILLWDLAEGK---RLYSLDAGAVIHALCFSPNRYWL-CAATEQS  232 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~  232 (303)
                      ++....+.|+...+.++|-.  ..+++++   .++.+.+||..-..   .+. .-+...++++++-|..+++ .++.+|.
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence            55667788888888888864  4566654   47899999964322   222 2234567889999987655 4556999


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      |.+||++.+++...+..                             +. ...++++|+..|.+++|+++.
T Consensus      2360 v~l~D~rqrql~h~~~~-----------------------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-----------------------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             EEEeehHHHHHHHHhhh-----------------------------hh-hhheeeccCcccceEEEEccc
Confidence            99999998876543321                             33 567999999999999999865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1.6e-07  Score=82.56  Aligned_cols=199  Identities=15%  Similarity=0.116  Sum_probs=112.6

Q ss_pred             ccccccceeeeecCCCCCcEEEEecC-C--CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASR-D--KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +..+.+.+....|+|++. .|+..+. +  ..|.+|++..++..      .+                  ....+.+...
T Consensus       194 l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~------~l------------------~~~~g~~~~~  248 (430)
T PRK00178        194 LLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRRE------QI------------------TNFEGLNGAP  248 (430)
T ss_pred             EecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEE------Ec------------------cCCCCCcCCe
Confidence            334556678889999875 5555443 3  35777777543211      00                  0111223457


Q ss_pred             EEeeCCCEEE-EEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEEEECCCceeE
Q 048118           88 AFSIDNRQIV-SASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKVWNLSNCKLR  162 (303)
Q Consensus        88 ~~~~~~~~l~-t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~iwd~~~~~~~  162 (303)
                      .|+|+|+.++ +...++  .|.++|..+.....+.   .+........|+|++.. .+++...++  .|.++|+.+++..
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT---NHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc---cCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence            8999998776 444555  4667787554332222   12223445679998732 333443444  4666787766643


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--C--CcEEE
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--E--QSIKI  235 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~--~~i~i  235 (303)
                      .... .........|+|+|+.++..+. ++  .|.++|+.+++.. .+..........|+|+|.+++.+.  +  ..|++
T Consensus       325 ~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~  402 (430)
T PRK00178        325 RVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGRGVLML  402 (430)
T ss_pred             Eeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            3221 1223345789999999877664 33  5788998877542 222222223457999987776543  2  34777


Q ss_pred             EeCCC
Q 048118          236 WDLES  240 (303)
Q Consensus       236 wd~~~  240 (303)
                      .++..
T Consensus       403 ~~~~g  407 (430)
T PRK00178        403 VSING  407 (430)
T ss_pred             EECCC
Confidence            77754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=4.2e-06  Score=68.17  Aligned_cols=249  Identities=13%  Similarity=0.187  Sum_probs=144.3

Q ss_pred             cccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           14 HTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +...++-+.++|+.. .|.++..   +|.|..|.+.........           +...        .....+.+.++++
T Consensus        38 ~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~~--------~~~g~~p~yvsvd   97 (346)
T COG2706          38 ELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNRQ--------TLPGSPPCYVSVD   97 (346)
T ss_pred             ccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eecc--------ccCCCCCeEEEEC
Confidence            445566677887653 4555543   466777776543111100           0000        0111233678999


Q ss_pred             eCCCEEEEEeC-CCcEEEEecCCcee-eeeecCCCCccc----------eEEEEEcCCCCCCEEEEE-eCCCcEEEEECC
Q 048118           91 IDNRQIVSASR-DRTIKLWNTLGECK-YTIQEGDAHTEW----------VSCVRFSPNTLQPTIVSA-SWDRTVKVWNLS  157 (303)
Q Consensus        91 ~~~~~l~t~~~-d~~i~vw~~~~~~~-~~~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~-~~dg~i~iwd~~  157 (303)
                      ++|++++++.. .+.|.++-+..+.. ........|...          +.+..+.|++  .++++. -....|.+|++.
T Consensus        98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG~Dri~~y~~~  175 (346)
T COG2706          98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLGTDRIFLYDLD  175 (346)
T ss_pred             CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecCCceEEEEEcc
Confidence            99998877754 57888887643211 111011112111          6778888976  344443 234568899998


Q ss_pred             CceeEEEEc---CCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCC-c---eEEEe-------cCCCeEEEEEEcCCC
Q 048118          158 NCKLRATLA---GHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEG-K---RLYSL-------DAGAVIHALCFSPNR  222 (303)
Q Consensus       158 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~---~~~~~-------~~~~~v~~~~~s~~~  222 (303)
                      .+++...-.   .....-.-+.|+|++++..+.. .+++|.+|..... .   .++++       ......-.+..+++|
T Consensus       176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG  255 (346)
T COG2706         176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG  255 (346)
T ss_pred             cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence            776532211   1123457799999999886555 5999999998763 2   22222       234567788899999


Q ss_pred             eEEEEEc--CCcEEEEeCCCC-ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-CeEEEE
Q 048118          223 YWLCAAT--EQSIKIWDLESK-SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-GVIRVW  298 (303)
Q Consensus       223 ~~l~~~~--~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g~v~~w  298 (303)
                      .+|.++.  ..+|.+|.+... ..+......                 ..+.....++.++|.+++|+++++| ..+.+|
T Consensus       256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~-----------------~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         256 RFLYASNRGHDSIAVFSVDPDGGKLELVGIT-----------------PTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CEEEEecCCCCeEEEEEEcCCCCEEEEEEEe-----------------ccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            9998886  457888876532 212111110                 0011223567789999988877764 467888


Q ss_pred             ecc
Q 048118          299 GIG  301 (303)
Q Consensus       299 ~~~  301 (303)
                      .++
T Consensus       319 ~~d  321 (346)
T COG2706         319 ERD  321 (346)
T ss_pred             EEc
Confidence            664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.96  E-value=2.9e-06  Score=71.52  Aligned_cols=142  Identities=20%  Similarity=0.245  Sum_probs=104.8

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCC-cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDR-TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      +|.+.|.-..+.-+++-++.|..|+ .+-++|..+.....+.   ..-..|.+++.+|++  ..++.+.....+.++|+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dG--K~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDG--KKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcCCC--cEEEEEcCceEEEEEEec
Confidence            5677777777777777888899998 8999998765533332   334568999999987  357777888899999999


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC----eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG----VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL  225 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (303)
                      ++....--+...+-|+.+.|||+++++|-+-.+|    .|+++|+..++........+.=.+-+|.|++..|
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence            9887655555667899999999999999887765    7899999877654332222333345677776544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=1.6e-08  Score=82.79  Aligned_cols=164  Identities=14%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEE-EEeCCCcEEEEECCCcee
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIV-SASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~dg~i~iwd~~~~~~  161 (303)
                      +..+..++.++++|.+..++...+++....+. ........-...-.++.|-.+.....++ ..+....+.+|....+. 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence            44556778888888888888776776544332 1110000000111222222222111111 12233334444443332 


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                      ...+.+|-..++.++++||+++++++..|..|++-....-..+..+-  +..-|..++.-++..++.++.|+++++||++
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence            34456888999999999999999999999999998776554444442  3456888888888888888899999999999


Q ss_pred             CCceeeeee
Q 048118          240 SKSIVEDLK  248 (303)
Q Consensus       240 ~~~~~~~~~  248 (303)
                      +++.+..+.
T Consensus       224 sgk~L~t~d  232 (390)
T KOG3914|consen  224 SGKLLDTCD  232 (390)
T ss_pred             cCCcccccc
Confidence            999886654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=3.1e-07  Score=80.88  Aligned_cols=168  Identities=18%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCC--cEEEEECCCceeEEEEcCCCCCeeEEEECCC
Q 048118          104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDR--TVKVWNLSNCKLRATLAGHTGYVNTVAVSPD  180 (303)
Q Consensus       104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  180 (303)
                      .|.++|..+.....+.   .....+.+..|+|++.  .++..+ .++  .|.++|+.+++... +....+......|+|+
T Consensus       199 ~l~i~d~dG~~~~~l~---~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYNEQMLL---RSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCCceEee---cCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence            4556666543222222   1234577889999973  344433 233  58888988766432 2222334457899999


Q ss_pred             CCEEEE-EeCCCe--EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC----CcEEEEeCCCCceeeeeeecccc
Q 048118          181 GSLCAS-GGKDGV--ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE----QSIKIWDLESKSIVEDLKVDLKT  253 (303)
Q Consensus       181 ~~~l~~-~~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~  253 (303)
                      |+.|+. .+.++.  |.++|+.+++..............+|+|++..++..++    ..|+++|+++++... +..    
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~----  347 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF----  347 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec----
Confidence            998765 455664  77788887754322222334566889999876655432    357888887665322 110    


Q ss_pred             ccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-CCeEEEE
Q 048118          254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-DGVIRVW  298 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-Dg~v~~w  298 (303)
                                    .  ..+....+|+|||++|+..+. ++..++|
T Consensus       348 --------------~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        348 --------------E--GEQNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             --------------C--CCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence                          0  001123578999998776544 4544444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=9.2e-07  Score=78.00  Aligned_cols=222  Identities=15%  Similarity=0.213  Sum_probs=132.4

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ....++.|+.+ .+++|-||.||.+++-++......  .....+.    ..+.  ++-+..+.||.+.|.-+.|+.+.+.
T Consensus        15 vkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d--~~~~gla----a~sn--LsmNQtLeGH~~sV~vvTWNe~~QK   85 (1189)
T KOG2041|consen   15 VKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTD--LNKSGLA----AASN--LSMNQTLEGHNASVMVVTWNENNQK   85 (1189)
T ss_pred             ceEEEEEEccc-CCeEEeccccceeEEEEccccCCc--ccccccc----cccc--cchhhhhccCcceEEEEEecccccc
Confidence            34678999976 579999999999999998654321  1111111    1121  2234467899999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE--------EEE-------------
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV--------KVW-------------  154 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i--------~iw-------------  154 (303)
                      |-|...+|-|.+|-+-......--..+.....|.+++|+.++.  .++..-.||.|        |||             
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~  163 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVL  163 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchhecccee
Confidence            9999999999999764332211111122345577888887763  23333334333        223             


Q ss_pred             --------------------ECCCc-------eeEEE----EcCCCCCeeEEEE--------CCCCCEEEEEeCCCeEEE
Q 048118          155 --------------------NLSNC-------KLRAT----LAGHTGYVNTVAV--------SPDGSLCASGGKDGVILL  195 (303)
Q Consensus       155 --------------------d~~~~-------~~~~~----~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~v~i  195 (303)
                                          |...+       .+...    +......|-.+.|        -|+...|+++-..|++++
T Consensus       164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence                                22110       00000    0000111333444        257778999989999888


Q ss_pred             EeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC----------CcEEEEeCCCCceeeeeee
Q 048118          196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE----------QSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       196 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------~~i~iwd~~~~~~~~~~~~  249 (303)
                      ..-........++.+..+....|+++|.+|+++..          +.|.+|.. -|+.+..+++
T Consensus       244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkv  306 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKV  306 (1189)
T ss_pred             hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEec
Confidence            75444433344555677888999999998887632          24555543 3555555443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=5.1e-06  Score=67.71  Aligned_cols=209  Identities=18%  Similarity=0.280  Sum_probs=126.5

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCC---CcEEEEecCCc-eeeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRD---RTIKLWNTLGE-CKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d---~~i~vw~~~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      .+.+.+.-++|+|+++.|.++-.+   +.|-.|.+... ....+. .......+..-+++++++ +..+.+--.-|.|.+
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v  115 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSV  115 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEE
Confidence            455677889999999888887654   66777765432 111111 111111223668888876 223333445688999


Q ss_pred             EECCC-ceeE--EEEcCCCCC----------eeEEEECCCCCEEEEEeC-CCeEEEEeCCCCceE----EEecCCCeEEE
Q 048118          154 WNLSN-CKLR--ATLAGHTGY----------VNTVAVSPDGSLCASGGK-DGVILLWDLAEGKRL----YSLDAGAVIHA  215 (303)
Q Consensus       154 wd~~~-~~~~--~~~~~~~~~----------i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~----~~~~~~~~v~~  215 (303)
                      +.++. +.+.  .....|.+.          +....+.|++++|++... --+|.+|++..+...    ..+..+.--+.
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            99865 3321  122234444          788899999999988763 347899999876532    22345667788


Q ss_pred             EEEcCCCeEEEEEc--CCcEEEEeCCCC-ceeeeeee-ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          216 LCFSPNRYWLCAAT--EQSIKIWDLESK-SIVEDLKV-DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       216 ~~~s~~~~~l~~~~--~~~i~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      +.|+|+++++.+..  +++|.+|..+.. ..+..+.. ...+           ..+ ....+..++..+|||++|.++.-
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-----------~dF-~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-----------EDF-TGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-----------ccc-CCCCceeEEEECCCCCEEEEecC
Confidence            99999998765443  789999998763 22222221 1100           011 12334567888999998887643


Q ss_pred             -CCeEEEEec
Q 048118          292 -DGVIRVWGI  300 (303)
Q Consensus       292 -Dg~v~~w~~  300 (303)
                       ...|-+|.+
T Consensus       264 g~dsI~~f~V  273 (346)
T COG2706         264 GHDSIAVFSV  273 (346)
T ss_pred             CCCeEEEEEE
Confidence             224555544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.91  E-value=5.7e-06  Score=78.53  Aligned_cols=200  Identities=13%  Similarity=0.201  Sum_probs=127.7

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCCcEEEE----ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ..+.|.++.+.++...++.+..+|.|.+.    +........+-   .-...|.+.+|+|+.  ..++..+.++.+.+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDE--ELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCc--CEEEEEeCCCEEEEEe
Confidence            34678999999999989889999999988    43322221111   224569999999986  3566666677766553


Q ss_pred             CC---------------Ccee--------EEEEcC------------------------CCCCeeEEEECCCCCEEEEEe
Q 048118          156 LS---------------NCKL--------RATLAG------------------------HTGYVNTVAVSPDGSLCASGG  188 (303)
Q Consensus       156 ~~---------------~~~~--------~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~  188 (303)
                      -.               ..+.        ...|.|                        ....-..++|-.||++||+.+
T Consensus       149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence            10               0000        001111                        112345688999999999877


Q ss_pred             C------CCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEcC----CcEEEEeCCCCceeeeeeecccccccc
Q 048118          189 K------DGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAATE----QSIKIWDLESKSIVEDLKVDLKTEAEK  257 (303)
Q Consensus       189 ~------d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (303)
                      -      -+++|||+-+ |+.-.+- .....-.+++|.|.|.++|+...    ..|.+|.- +|-.-.++....      
T Consensus       229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~------  300 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF------  300 (928)
T ss_pred             EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC------
Confidence            4      2589999865 4432222 22334567899999999988753    45777774 332222222111      


Q ss_pred             ccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          258 SEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                                ......+..+.|++|+..||+--.|. |.+|-.++|
T Consensus       301 ----------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  301 ----------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             ----------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence                      11233457899999999999988666 999999988

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.91  E-value=3.3e-06  Score=80.09  Aligned_cols=284  Identities=13%  Similarity=0.221  Sum_probs=154.4

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccC---c-----cccc----------eeeeeecCCCcce
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE---E-----KTYG----------VARRRLTGHSHFV   66 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~---~-----~~~~----------~~~~~~~~~~~~i   66 (303)
                      ++++|.+..   -|.+.+|+|+. ++++....++++-+-...-.   +     ...+          ....-+.+..+..
T Consensus       113 ~E~VG~vd~---GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~  188 (928)
T PF04762_consen  113 IEIVGSVDS---GILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA  188 (928)
T ss_pred             eEEEEEEcC---cEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence            455554443   58899999986 68888888888887753210   0     0000          0000000000000


Q ss_pred             -----EEEEeC--CCCceecccCCEEEEEEeeCCCEEEEEeC---C---CcEEEEecCCceeeeeecCCCCccceEEEEE
Q 048118           67 -----QDVVLS--SDGQFVGHTKDVLSVAFSIDNRQIVSASR---D---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRF  133 (303)
Q Consensus        67 -----~~~~~~--~~~~~~~h~~~i~~i~~~~~~~~l~t~~~---d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~  133 (303)
                           ..-...  ..+.+. +.+.-..|+|-.||++||+.+.   .   ..+|||+-.+......   ++-..--.+++|
T Consensus       189 aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stS---E~v~gLe~~l~W  264 (928)
T PF04762_consen  189 AARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTS---EPVDGLEGALSW  264 (928)
T ss_pred             hhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEecc---ccCCCccCCccC
Confidence                 000000  011222 3445567999999999998875   2   5788998764322111   111222246889


Q ss_pred             cCCCCCCEEEEEeC---CCcEEEEECCCceeEEEEc----CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---
Q 048118          134 SPNTLQPTIVSASW---DRTVKVWNLSNCKLRATLA----GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---  203 (303)
Q Consensus       134 ~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---  203 (303)
                      -|.+  +.+++.-.   .-.|.+|. ++|....+|.    .....|..+.|++++..||..-.|. |++|-..+..-   
T Consensus       265 rPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK  340 (928)
T PF04762_consen  265 RPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK  340 (928)
T ss_pred             CCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence            9986  45555433   23466665 4444444443    2346789999999999999877655 99998766542   


Q ss_pred             -EEEecCCCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCC----Cc--------eeeeeeec--cccccccccCccceee
Q 048118          204 -LYSLDAGAVIHALCFSPNR--YWLCAATEQSIKIWDLES----KS--------IVEDLKVD--LKTEAEKSEATTATTT  266 (303)
Q Consensus       204 -~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~----~~--------~~~~~~~~--~~~~~~~~~~~~~~~~  266 (303)
                       ...+.....+..+.|+|..  .+.+.+.+|.+..+++..    +.        .+..+.-.  .-++......++++..
T Consensus       341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~  420 (928)
T PF04762_consen  341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS  420 (928)
T ss_pred             EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence             1223333445558999974  344455557776665421    10        00000000  0000011111222211


Q ss_pred             cc-ccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          267 IK-KKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       267 ~~-~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .. .....+.+++|++++..+++-..||.+.+|..
T Consensus       421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence            11 11234688999999888999999999999974

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=1.2e-08  Score=89.70  Aligned_cols=212  Identities=17%  Similarity=0.309  Sum_probs=135.5

Q ss_pred             eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           77 FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      +.+|...|+.+-|+++. ..+++++.|-.+..||....... +.....-...-..++|+-..  +.+++.+....|++||
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd  186 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-FYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWD  186 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-eeeeecccccCceeeecccC--cchhhhccCCceEEEe
Confidence            45889999999999864 58999999999999998654322 11111111223457787543  3455556677899999


Q ss_pred             CCCc-eeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--eEEEecCCCeEEEEEEcCCC--eEEEE-E
Q 048118          156 LSNC-KLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNR--YWLCA-A  228 (303)
Q Consensus       156 ~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~--~~l~~-~  228 (303)
                      ++.+ .++..+++|...|..+.|+.-. ..+.+++.||+|+.||-....  .-+++....++..-++-|-|  ..+.- -
T Consensus       187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~  266 (1081)
T KOG0309|consen  187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV  266 (1081)
T ss_pred             ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence            9765 5778888898889999887532 357788899999999986543  33444556677766777754  22221 2


Q ss_pred             cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC--------CC--CEEEEeecCCeEEEE
Q 048118          229 TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV--------DG--STLFSGYTDGVIRVW  298 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--------~~--~~l~~gs~Dg~v~~w  298 (303)
                      .++.+.+++.++.....+          ..+..++.+.+.+|.-.+....|--        |.  =.|+|=|.|..+|+|
T Consensus       267 G~n~v~~~~c~n~d~e~n----------~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  267 GGNMVPQLRCENSDLEWN----------VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             CCeeeeeccccchhhhhc----------cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            233555555544332211          1122334455555554443333332        21  269999999999999


Q ss_pred             ecc
Q 048118          299 GIG  301 (303)
Q Consensus       299 ~~~  301 (303)
                      -++
T Consensus       337 pI~  339 (1081)
T KOG0309|consen  337 PID  339 (1081)
T ss_pred             ecc
Confidence            875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=7.9e-09  Score=57.72  Aligned_cols=38  Identities=47%  Similarity=0.832  Sum_probs=36.0

Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD  197 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  197 (303)
                      ++..++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.90  E-value=5.4e-08  Score=77.41  Aligned_cols=215  Identities=17%  Similarity=0.319  Sum_probs=133.4

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc--eeee----eecCCC---------CccceEEEEEcCCCCCCEEEEE
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKYT----IQEGDA---------HTEWVSCVRFSPNTLQPTIVSA  145 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~--~~~~----~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~  145 (303)
                      ...|+++.|...|.+++||...|.|.+|.-...  +.+.    ++..+.         -.+.|..+.|..++....++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            456889999999999999999999999974321  1111    111111         1234677877765555677778


Q ss_pred             eCCCcEEEEECCCce--------------------e----------------------EEEE-cCCCCCeeEEEECCCCC
Q 048118          146 SWDRTVKVWNLSNCK--------------------L----------------------RATL-AGHTGYVNTVAVSPDGS  182 (303)
Q Consensus       146 ~~dg~i~iwd~~~~~--------------------~----------------------~~~~-~~~~~~i~~~~~~~~~~  182 (303)
                      +.|.+|++|.+....                    +                      .+.+ ..|.-.+.++.++.+.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            999999999864220                    0                      0001 24555678899998888


Q ss_pred             EEEEEeCCCeEEEEeCCCCceEEEe---cC------CCeEEEEEEcCCC--eEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118          183 LCASGGKDGVILLWDLAEGKRLYSL---DA------GAVIHALCFSPNR--YWLCAATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       183 ~l~~~~~d~~v~iwd~~~~~~~~~~---~~------~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      .++++ .|-+|.+|++.-...-.++   ..      ...|++..|+|..  .++.+++.|.|++-|++...+-..-+- +
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k-l  263 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK-L  263 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh-h
Confidence            77765 6789999998643322222   21      1357888999974  455677889999999986544321100 0


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..  ...+ ......+..-...+.++.|++.|+++++-+. .+|++||+.
T Consensus       264 fe--~~~D-~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvn  309 (460)
T COG5170         264 FE--LTID-GVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVN  309 (460)
T ss_pred             hh--hccC-cccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecc
Confidence            00  0000 0000001111123567889999999987664 589999985

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.89  E-value=8.1e-08  Score=77.33  Aligned_cols=205  Identities=22%  Similarity=0.292  Sum_probs=129.9

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.||.+.|+....-|...-+++.+.|.++|||-..+...+..........+++++.+.++.  ..++.|-.+|++.-+.
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEEEE
Confidence            46788888888888888888999999999999964332221111111123456777777764  4678888889988885


Q ss_pred             CC----CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCC
Q 048118          156 LS----NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQ  231 (303)
Q Consensus       156 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  231 (303)
                      +.    .....+.+..|...+..+.|+-..+.+++.+.|..+.---.+.+..+..........++.+.-. .....-..|
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~g  175 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSG  175 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEeccccc
Confidence            53    3345566778999999999998888999999988776555555554432211111111111000 111111223


Q ss_pred             cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          232 SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .|.+-.+..                  .......++.++...+.++.|.|....|++|..|..+.+||++
T Consensus       176 qvt~lr~~~------------------~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  176 QITMLKLEQ------------------NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             ceEEEEEee------------------cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence            333322211                  1112234456666677889999999999999999999999985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.87  E-value=1.8e-06  Score=67.53  Aligned_cols=194  Identities=11%  Similarity=0.022  Sum_probs=120.8

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE-EeeCCCEEEEEeCCCcEE
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA-FSIDNRQIVSASRDRTIK  106 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~-~~~~~~~l~t~~~d~~i~  106 (303)
                      -.+|+.||.-|.+.+|..+..+..+..+-                      .|...|.-+. .......+..++.|++++
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd----------------------~snn~v~~~~r~cd~~~~~~i~sndht~k  141 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD----------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGK  141 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec----------------------ccccchhhhhhhcccccceeeccCCccee
Confidence            46899999999999998864432211110                      0111111000 011122455678899999


Q ss_pred             EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEE-EEcCCCCCeeEEEECCCCCE
Q 048118          107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRA-TLAGHTGYVNTVAVSPDGSL  183 (303)
Q Consensus       107 vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~  183 (303)
                      +.+............ . +-...++..++++  ..+++.+....|..|.+....  ... ....-++.-.+..|+.....
T Consensus       142 ~~~~~~~s~~~~~h~-~-~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~  217 (344)
T KOG4532|consen  142 TMVVSGDSNKFAVHN-Q-NLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ  217 (344)
T ss_pred             EEEEecCcccceeec-c-ccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce
Confidence            988755433222111 1 1126778888876  467777788888888875432  222 23333455577889999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceE-EEe-----cCCCeEEEEEEcCCC---eEEEEEcCCcEEEEeCCCCceeeee
Q 048118          184 CASGGKDGVILLWDLAEGKRL-YSL-----DAGAVIHALCFSPNR---YWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       184 l~~~~~d~~v~iwd~~~~~~~-~~~-----~~~~~v~~~~~s~~~---~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      +|+++.||++.|||++..... ...     .+...++.+.|++.|   .++.+-.-+.+.+-|+++++-...+
T Consensus       218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            999999999999999864322 111     245689999999865   3344445678999999987655443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.87  E-value=7.3e-07  Score=69.67  Aligned_cols=154  Identities=15%  Similarity=0.043  Sum_probs=100.3

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      +++++++++++++++.+....|-.|.+..+..+... ....-++.-.+..|+...  ..++++..||++.|||++.....
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~--~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND--LQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc--ceEEEEecCCcEEEEEecccccc
Confidence            778999999999999999999999987544322221 112223334577788765  46899999999999999865322


Q ss_pred             -----EEEcCCCCCeeEEEECCCCC--EEEEEeCCCeEEEEeCCCCceEEEecCC---------CeEEEEEEcCCCeEEE
Q 048118          163 -----ATLAGHTGYVNTVAVSPDGS--LCASGGKDGVILLWDLAEGKRLYSLDAG---------AVIHALCFSPNRYWLC  226 (303)
Q Consensus       163 -----~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~  226 (303)
                           .+-..|++.+..+.|+|-|.  +|...-.-+.+.+.|++++.....+...         ..+....|+.++.-..
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence                 22345889999999998663  4444445678999999987654443211         1244445555544333


Q ss_pred             EEcCCcEEEEeCC
Q 048118          227 AATEQSIKIWDLE  239 (303)
Q Consensus       227 ~~~~~~i~iwd~~  239 (303)
                      +.+.-.+.=|++.
T Consensus       319 v~~e~~~ae~ni~  331 (344)
T KOG4532|consen  319 VKNELQGAEYNIL  331 (344)
T ss_pred             cccchhhheeecc
Confidence            3333444555544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.86  E-value=6.2e-06  Score=70.01  Aligned_cols=192  Identities=12%  Similarity=0.189  Sum_probs=113.0

Q ss_pred             CEEEEEEeeCCC--EEE-----EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe---------
Q 048118           83 DVLSVAFSIDNR--QIV-----SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS---------  146 (303)
Q Consensus        83 ~i~~i~~~~~~~--~l~-----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------  146 (303)
                      .|....|+|.+.  .|+     ..+.++++++|.+...........  -...-..+.|++.+....+.+-.         
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeeccccee
Confidence            466667777632  233     234667888887643222111100  00011246677765321111111         


Q ss_pred             CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeE
Q 048118          147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW  224 (303)
Q Consensus       147 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (303)
                      .+..++++++....+.... .-.++|..+.|.|.++.|++.+  .+..+.++|++.. ..+.+ ....-+.+.|+|.+.+
T Consensus       253 gesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~  329 (561)
T COG5354         253 GESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERY  329 (561)
T ss_pred             ccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec-CCcccccccccCcccE
Confidence            1245778887644433332 4568999999999988776554  6889999999865 33333 3445556789999866


Q ss_pred             EEEE-c---CCcEEEEeCCCCceee-eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee------cCC
Q 048118          225 LCAA-T---EQSIKIWDLESKSIVE-DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY------TDG  293 (303)
Q Consensus       225 l~~~-~---~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs------~Dg  293 (303)
                      +..+ -   .|.|.+||...+..+- .+.                      ...+.-+.|+||+.++.+..      .|+
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~----------------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn  387 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFN----------------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDN  387 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEee----------------------cCCceEeeccCCceEEEecCCCcccccCc
Confidence            5543 2   5789999987654332 110                      01123367999999877663      388


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      .+.+||+.
T Consensus       388 ~i~l~~v~  395 (561)
T COG5354         388 SIKLWDVY  395 (561)
T ss_pred             ceEEEEec
Confidence            89999985

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.85  E-value=4.1e-06  Score=80.84  Aligned_cols=160  Identities=14%  Similarity=0.116  Sum_probs=104.7

Q ss_pred             EEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeec------CCC------CccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           84 VLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQE------GDA------HTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        84 i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~------~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      ...++++| ++.++++...++.|++|+........+..      ...      .-.....++++|++. ..+++-..++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCe
Confidence            45789999 56667777788999999975432211110      000      012345688999763 24566677799


Q ss_pred             EEEEECCCceeEEEEc-------------CC--------CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118          151 VKVWNLSNCKLRATLA-------------GH--------TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~-------------~~--------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  209 (303)
                      |++||+.++.......             ..        -..-..++++++|+.+++-+.+++|++||..++........
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            9999987654321110             00        01235789999999888888999999999987654322211


Q ss_pred             --------------CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCcee
Q 048118          210 --------------GAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIV  244 (303)
Q Consensus       210 --------------~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~  244 (303)
                                    -.....++++++|.++++. .++.|++||+++++..
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence                          1246678999998765554 5788999999887653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.84  E-value=5.3e-08  Score=75.54  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=62.0

Q ss_pred             ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-eEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 048118          127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-LRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE  200 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~  200 (303)
                      .+.+++-+|.. +..+++|+.||.+-+||.++.. +...+..|+.+++.+.|+| ++..|.++++||.+-.||..+
T Consensus       181 ~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            38899999976 4578899999999999998764 3455678999999999999 667899999999999999764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.80  E-value=3.2e-06  Score=71.25  Aligned_cols=147  Identities=20%  Similarity=0.271  Sum_probs=105.9

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-cEEEEECCCceeEEEEcCCCC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-TVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      +|.+++..+. |..-+.+......  ++.  ++...|.-..+.-++.  .++.|..|| .+-+||..+++... +...-+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~--iqv--~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg  402 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYS--IQV--GKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG  402 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCee--EEc--CCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence            5677777776 4555555433222  222  2344465555555442  578888998 89999998876543 455567


Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEEEc-----CCcEEEEeCCCCcee
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCAAT-----EQSIKIWDLESKSIV  244 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-----~~~i~iwd~~~~~~~  244 (303)
                      .|.+++.+|+|++++++.....+-+.|+.+++.-..- .....|..+.|+|++.|+|.+.     .+.|++||+.+++..
T Consensus       403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            8999999999999999988889999999988753221 2246799999999999998774     467999999998876


Q ss_pred             ee
Q 048118          245 ED  246 (303)
Q Consensus       245 ~~  246 (303)
                      ..
T Consensus       483 ~v  484 (668)
T COG4946         483 DV  484 (668)
T ss_pred             Ee
Confidence            53

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=3.8e-06  Score=72.04  Aligned_cols=111  Identities=14%  Similarity=0.274  Sum_probs=71.3

Q ss_pred             CCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCC-Cc---eEEEecCCCeEEEEEEcCCCeEEEEE----cCCcEEEEe
Q 048118          169 TGYVNTVAVSPDGSLCASGG---KDGVILLWDLAE-GK---RLYSLDAGAVIHALCFSPNRYWLCAA----TEQSIKIWD  237 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~-~~---~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd  237 (303)
                      ...|...+|-|.|..+++-+   ...++++|.+++ ..   .+..++. ...+.+.|+|.|.+++++    ..|.+.+||
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            35677889999998765433   245788888763 21   2233332 567889999999887654    478899999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC------eEEEEec
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG------VIRVWGI  300 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg------~v~~w~~  300 (303)
                      ......... .             .      ......+.+.|.|.|+|++|+++-+      --++|+.
T Consensus       524 ~~~a~~k~~-~-------------~------~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  524 TDYADLKDT-A-------------S------PEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             cchhhhhhc-c-------------C------ccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence            864221110 0             0      0112235688999999999998744      4455554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.78  E-value=1.1e-07  Score=74.94  Aligned_cols=170  Identities=18%  Similarity=0.183  Sum_probs=108.8

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      |+....+++|.-..+...|+..+++++.|||.|+.+..||+.-.. +.                 .+.   .-+-|+..|
T Consensus       155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~-----------------i~~---n~kvH~~GV  213 (339)
T KOG0280|consen  155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF-----------------IWH---NSKVHTSGV  213 (339)
T ss_pred             eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce-----------------eee---cceeeecce
Confidence            445558999999999999998888999999999999999985111 10                 010   123478888


Q ss_pred             EEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---
Q 048118           85 LSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---  160 (303)
Q Consensus        85 ~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---  160 (303)
                      .+|.-+| .+.+++||+.|..|++||.+...+ ++... .-.+.|.-++++|.... .++.++.-.-.++-+.+++.   
T Consensus       214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-Pl~~~-~v~GGVWRi~~~p~~~~-~lL~~CMh~G~ki~~~~~~~~e~  290 (339)
T KOG0280|consen  214 VSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-PLFKA-KVGGGVWRIKHHPEIFH-RLLAACMHNGAKILDSSDKVLEF  290 (339)
T ss_pred             EEEecCCCCCceEEEeccccceeeeehhcccC-ccccC-ccccceEEEEecchhhh-HHHHHHHhcCceEEEecccccch
Confidence            8888776 577999999999999999864221 11111 22356888999986533 23333333334555544322   


Q ss_pred             --eEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEE-EEeC
Q 048118          161 --LRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVIL-LWDL  198 (303)
Q Consensus       161 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~-iwd~  198 (303)
                        .....+.|.+-+..-.|......|++++ .|+.++ +|-.
T Consensus       291 ~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  291 QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             heeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence              2233455655555556644444677765 466644 6643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=7.5e-08  Score=84.60  Aligned_cols=156  Identities=14%  Similarity=0.230  Sum_probs=113.4

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-------------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCC
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-------------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD  148 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d  148 (303)
                      ....++.|+....+++.||.||.+++-.+.....             ..-+..++|+..|..+.|+-+.  ..+-+...+
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtSDt~   92 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTSDTS   92 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--ccccccCCC
Confidence            3467999999999999999999999986532110             1123446899999999998763  468888999


Q ss_pred             CcEEEEECCCceeEEEEcC--CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eE
Q 048118          149 RTVKVWNLSNCKLRATLAG--HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YW  224 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~  224 (303)
                      |.|.+|-+.++....++..  ..+.|-+++|+.+|..++..-.||.|.+=.+. |..++.-. .+.....+.|++|. ..
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecccHHHH
Confidence            9999999877765433322  34568899999999999999999998776654 33333221 22344567899985 45


Q ss_pred             EEEEcCCcEEEEeCCC
Q 048118          225 LCAATEQSIKIWDLES  240 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~  240 (303)
                      |+.-.+|.+.+||-+.
T Consensus       172 Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQG  187 (1189)
T ss_pred             HhhhcCCcEEEecccc
Confidence            5666789999999754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=2.2e-08  Score=85.43  Aligned_cols=168  Identities=21%  Similarity=0.310  Sum_probs=116.2

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc--eee---eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKY---TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~--~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      .|.||+..|..+.--.+...+++++.|++|++|.+..+  ...   .......|+.+|..+.|-.+-  ..  .++.||-
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~--i~ScD~g  805 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RS--IASCDGG  805 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--ce--eeeccCc
Confidence            36799999988876666677999999999999987432  111   112234678888888886542  12  3567999


Q ss_pred             EEEEECCCceeEEEEc--CCCCCeeEEEECCC--CCEEEEE-eCCCeEEEEeCCCCceEEEec------CCCeEEEEEEc
Q 048118          151 VKVWNLSNCKLRATLA--GHTGYVNTVAVSPD--GSLCASG-GKDGVILLWDLAEGKRLYSLD------AGAVIHALCFS  219 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~l~~~-~~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~s  219 (303)
                      |++||..-+.+...+.  ...+.+..+..-|+  ...++.+ +...+|+++|.+..+....+.      ....+++++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987665543222  12234455555453  3344444 678999999999877544332      23568899999


Q ss_pred             CCCeEEEEE-cCCcEEEEeCCCCceeeee
Q 048118          220 PNRYWLCAA-TEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       220 ~~~~~l~~~-~~~~i~iwd~~~~~~~~~~  247 (303)
                      +.|++++++ +.|.|.+.|.++|+++...
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            999888765 7899999999999987543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.75  E-value=4.1e-07  Score=70.73  Aligned_cols=203  Identities=14%  Similarity=0.201  Sum_probs=106.8

Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC------CCcEEEEECCCceeEE
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW------DRTVKVWNLSNCKLRA  163 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------dg~i~iwd~~~~~~~~  163 (303)
                      +-.+..++++..|+.+.+++........-+....+.+ -.+.+.-..   ..++....      -+..+.|+++..+...
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~---~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH---GNSILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec---ccEEecCCcceEeeccceeeeccccccccc
Confidence            3345678899999999999864311100000000111 011111111   11222222      2345566665433221


Q ss_pred             EEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCC--CeEEEEEcCCcEEEEeC
Q 048118          164 TLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN--RYWLCAATEQSIKIWDL  238 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~  238 (303)
                      .-..-...|++++-+|..+ .+++|+.||.+.+||.+........  .+...+..+-|+|.  ..+++++.||.+..||.
T Consensus       174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            1111123488999999655 5677889999999999876433222  24578899999996  46888999999999997


Q ss_pred             CCCceeeeeeeccc-cccccccCccce----eeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          239 ESKSIVEDLKVDLK-TEAEKSEATTAT----TTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       239 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .+ .++..-.-... ......+.....    ..+.....-+++  |.--|..|++|++-+.|.+++
T Consensus       254 s~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  254 ST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            64 22221000000 000000000000    011111122233  334588999999999998874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=6e-08  Score=85.41  Aligned_cols=200  Identities=19%  Similarity=0.296  Sum_probs=132.4

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---  158 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~---  158 (303)
                      +.+..+..+|.|+-++.++.-|- .+-|+...............-.+..+.|+|.....+-++......-.+|.+..   
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS  103 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence            45567788888887777776553 34444322111111111112235678888877666666666666666787743   


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-eEEEec-CCCeEEEEEEcCC-CeEEEEEcCCcEE
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGK-RLYSLD-AGAVIHALCFSPN-RYWLCAATEQSIK  234 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~-~~~l~~~~~~~i~  234 (303)
                      +.....+-+|...|+.+-|+|+.. .+++++-|-.+..||+++.. +++.+. ......++.|+-. ...++.+..+.|+
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            344455678899999999999765 78999999999999998754 444442 3455667888764 5677778888999


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEeecCCeEEEEecc
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +||++.+...                   ...++++...+..++|... ...+.+.+.||+|+.||-.
T Consensus       184 vwd~r~gs~p-------------------l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  184 VWDLRKGSTP-------------------LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             EEeccCCCcc-------------------eEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            9999877532                   2233444444566666543 4568899999999999865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=7.5e-06  Score=71.32  Aligned_cols=153  Identities=11%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             CEEEEEEeeCCCE-EEEEeCC---CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC--CcEEEEEC
Q 048118           83 DVLSVAFSIDNRQ-IVSASRD---RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD--RTVKVWNL  156 (303)
Q Consensus        83 ~i~~i~~~~~~~~-l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~  156 (303)
                      .+..-.|+|+|+. ++..+.+   ..|.++|+.+.....+...   ........|+|++.. .+++.+.+  ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---QGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---CCcEEeeEECCCCCE-EEEEEccCCCcEEEEEEC
Confidence            5667899999984 5544443   4566777755444333321   223456779998743 33444433  46777888


Q ss_pred             CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-C--
Q 048118          157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-E--  230 (303)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--  230 (303)
                      .+++.. .+..+........|+|||+.|+..+. .+  .|.+.|+.+++.......+..  ...|+|+|..++... .  
T Consensus       265 ~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        265 NTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             CCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCC
Confidence            777643 34433333445689999998776653 23  678888877665322221221  248999997665442 1  


Q ss_pred             -------CcEEEEeCCCCc
Q 048118          231 -------QSIKIWDLESKS  242 (303)
Q Consensus       231 -------~~i~iwd~~~~~  242 (303)
                             ..|++.|+++++
T Consensus       342 ~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             cccCCCCcEEEEEECCCCC
Confidence                   268888887765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=5.7e-08  Score=54.16  Aligned_cols=34  Identities=38%  Similarity=0.708  Sum_probs=32.1

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN  109 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~  109 (303)
                      .+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4678999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.69  E-value=1.6e-05  Score=62.94  Aligned_cols=105  Identities=14%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCC----CCccceEEEEEcCCCC----CCEEEEEeCCCcEEEEEC
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD----AHTEWVSCVRFSPNTL----QPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~----~~~~~~~~~dg~i~iwd~  156 (303)
                      ..++|+||+.+||.+...|+|+++|+.+...+.+....    .-...|..+.|-+...    ...++.....|.++-|-+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            46999999999999999999999999876554432211    1124566666654321    125677788888887765


Q ss_pred             CC-----ceeEEE--EcC-CCCCeeEEEECCCCCEEEEEeC
Q 048118          157 SN-----CKLRAT--LAG-HTGYVNTVAVSPDGSLCASGGK  189 (303)
Q Consensus       157 ~~-----~~~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~  189 (303)
                      ..     .+....  +.. +...|+++.++|..++|++|+.
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~  167 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC  167 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence            22     122222  222 3568999999999998887764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.68  E-value=1.4e-05  Score=67.88  Aligned_cols=114  Identities=23%  Similarity=0.315  Sum_probs=83.7

Q ss_pred             ccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCC
Q 048118          125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEG  201 (303)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~  201 (303)
                      .++|...+|.|.+.+..+++|-.+..+-++|++.+ ++..+.  ...=..+.|+|.+++++.++-   .|.+-+||....
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            56799999999887777788888999999999776 443333  334456789999999988765   478999998776


Q ss_pred             ceEE-EecCCCeEEEEEEcCCCeEEEEEc-------CCcEEEEeCCCCc
Q 048118          202 KRLY-SLDAGAVIHALCFSPNRYWLCAAT-------EQSIKIWDLESKS  242 (303)
Q Consensus       202 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~iwd~~~~~  242 (303)
                      .... .+. .....-+.|+|+++++-.+.       |..|.+||+....
T Consensus       351 f~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         351 FKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             eEEEEEee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            5544 444 33344567999998765542       6789999986543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.5e-06  Score=72.69  Aligned_cols=218  Identities=18%  Similarity=0.221  Sum_probs=141.7

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecC-CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASR-DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT   81 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~   81 (303)
                      .+.+.+.++++|-..|.+++.+.++ -++.|.+. |..++++|+..-.......+.-+++                    
T Consensus        41 sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg--------------------   99 (558)
T KOG0882|consen   41 SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG--------------------   99 (558)
T ss_pred             cceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCC--------------------
Confidence            4567777899999999999888664 68888888 9999999987532211111111111                    


Q ss_pred             CCEEEEEEee-CC---CEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           82 KDVLSVAFSI-DN---RQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        82 ~~i~~i~~~~-~~---~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                          .+.|.. .|   ..++ +.-.++.+.++|-.+..-........|..+|.++.++|.+  ..+++....|.|..|..
T Consensus       100 ----~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen  100 ----FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG--DSAVSIDISGMVEYWSA  173 (558)
T ss_pred             ----ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc--cceeeccccceeEeecC
Confidence                111211 11   1232 2335677888886443211122234688899999999875  35778888899999987


Q ss_pred             CC------ceeEE---------EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----------C
Q 048118          157 SN------CKLRA---------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----------G  210 (303)
Q Consensus       157 ~~------~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----------~  210 (303)
                      ..      .+...         .+.......+++.|+|++..+.+-+.|.+|+++++++++.++.++.           .
T Consensus       174 e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~  253 (558)
T KOG0882|consen  174 EGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP  253 (558)
T ss_pred             CCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence            52      11111         1222345678999999999999999999999999998865443310           0


Q ss_pred             C-----------------------eEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118          211 A-----------------------VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       211 ~-----------------------~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      .                       .-..+.|...+.+|..++-=-|++.++.++..++.+
T Consensus       254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL  313 (558)
T ss_pred             cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence            0                       122356777777777776667899999888776654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.65  E-value=0.00012  Score=59.23  Aligned_cols=191  Identities=19%  Similarity=0.174  Sum_probs=113.2

Q ss_pred             EEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc-CCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           86 SVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS-PNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        86 ~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      +..|.+ ++.++.+-...+.|..|+..+.........    . ...+.+. ++   ..++.+.. +.+.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~-~~G~~~~~~~---g~l~v~~~-~~~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP----G-PNGMAFDRPD---GRLYVADS-GGIAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS----S-EEEEEEECTT---SEEEEEET-TCEEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC----C-CceEEEEccC---CEEEEEEc-CceEEEecCCCcEEE
Confidence            567887 666677766788899998866544332211    1 4566676 44   34555554 455556988876543


Q ss_pred             EEcC-----CCCCeeEEEECCCCCEEEEEeCC--------CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE--E
Q 048118          164 TLAG-----HTGYVNTVAVSPDGSLCASGGKD--------GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA--A  228 (303)
Q Consensus       164 ~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~  228 (303)
                      ....     .....+.+++.|+|++.++....        |.+..++.. ++.......-...+.++|+|++..|..  +
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence            3322     23467899999999977776543        567777776 443333333455788999999865543  3


Q ss_pred             cCCcEEEEeCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          229 TEQSIKIWDLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ..+.|+.|++..... +...+...              .+.........+++..+|.+.++....+.|.+++.
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFI--------------DFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEE--------------E-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             ccceeEEEeccccccceeeeeeEE--------------EcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            467899999864322 22111100              01111123455777788877777777778877764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.65  E-value=1.1e-06  Score=72.17  Aligned_cols=161  Identities=20%  Similarity=0.286  Sum_probs=98.8

Q ss_pred             eecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE-
Q 048118           21 IATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA-   99 (303)
Q Consensus        21 v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~-   99 (303)
                      +..++. .+++|.+-.+....+++.....+. .....        ++++           ...-+.+.+..+......+ 
T Consensus        68 ~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~-~kl~~--------~~~v-----------~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   68 VLTSDS-GRLVAVATSSKQRAVFDYRENPKG-AKLLD--------VSCV-----------PKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccCCC-ceEEEEEeCCCceEEEEEecCCCc-ceeee--------Eeec-----------ccCcceeeeeeccceEEEEe
Confidence            345543 467777777777778877543320 00000        0000           1122334444443333333 


Q ss_pred             --eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE-EEEcCCCCCeeEEE
Q 048118          100 --SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVA  176 (303)
Q Consensus       100 --~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~  176 (303)
                        +....+.+|....   ......-+|...+..++++|++  ..++++..|+.||+-.....-.. .-.-||+..|..++
T Consensus       127 kagD~~~~di~s~~~---~~~~~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  127 KAGDVYSFDILSADS---GRCEPILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             ecCCceeeeeecccc---cCcchhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence              3334444554321   1122223677788999999997  57999999999998654332222 33457999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceEEEec
Q 048118          177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSLD  208 (303)
Q Consensus       177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  208 (303)
                      +-+ ++.|+++|.|+++++||+++++.+.+++
T Consensus       202 l~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence            876 4568999999999999999999887664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=5.2e-05  Score=60.97  Aligned_cols=180  Identities=15%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             CCCEEEEEeCCCcEEEEec-CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-cCCC
Q 048118           92 DNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHT  169 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~  169 (303)
                      ++.++++++.++.|..||. .+...+........... .  ...    ...++.++.++.++.+|..+++..... ....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~----~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P--VVD----GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E--EEE----TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e--eec----ccccccccceeeeEecccCCcceeeeeccccc
Confidence            4566777789999999997 44444443322111111 1  111    135666778889999999999887763 3221


Q ss_pred             C---CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC-----e-------EEEEEEcCCCeEEEEEcCCcEE
Q 048118          170 G---YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-----V-------IHALCFSPNRYWLCAATEQSIK  234 (303)
Q Consensus       170 ~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~-------v~~~~~s~~~~~l~~~~~~~i~  234 (303)
                      .   ..........+..++.+..++.+..+|+++|+.+.......     .       ...+.+. ++.++++..++.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~  186 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGDGRVV  186 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEECCTSSEE
T ss_pred             cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEEEcCCCeEE
Confidence            1   11122222237788888889999999999999887764321     1       1233333 45666666677644


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .+|+++++.+....  ...                    .. ....+++..|++++.||.+..||+..
T Consensus       187 ~~d~~tg~~~w~~~--~~~--------------------~~-~~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  187 AVDLATGEKLWSKP--ISG--------------------IY-SLPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEETTTTEEEEEEC--SS---------------------EC-ECEECCCTEEEEEETTTEEEEEETTT
T ss_pred             EEECCCCCEEEEec--CCC--------------------cc-CCceeeCCEEEEEeCCCEEEEEECCC
Confidence            44999887543111  000                    00 11346778888888999999999853

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.60  E-value=3.7e-05  Score=66.50  Aligned_cols=214  Identities=13%  Similarity=0.146  Sum_probs=121.6

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL  107 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~v  107 (303)
                      +++++.++.++.|..+|...++......   +..              .+   ...   .  ..++..++.++.++.+..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~--------------~~---~~~---p--~v~~~~v~v~~~~g~l~a  119 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVD---LDE--------------RL---SGG---V--GADGGLVFVGTEKGEVIA  119 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeec---CCC--------------Cc---ccc---e--EEcCCEEEEEcCCCEEEE
Confidence            3567888888888888876544322111   000              00   011   1  123567777888899988


Q ss_pred             EecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee-----EEEECCCC
Q 048118          108 WNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN-----TVAVSPDG  181 (303)
Q Consensus       108 w~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~~~~~  181 (303)
                      +|.. ++..+.....    ..+.   -.|--....++.++.++.+..+|.++++.+.++........     +...  .+
T Consensus       120 ld~~tG~~~W~~~~~----~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~  190 (377)
T TIGR03300       120 LDAEDGKELWRAKLS----SEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--AD  190 (377)
T ss_pred             EECCCCcEeeeeccC----ceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--EC
Confidence            8874 3333322111    1111   11110123567778899999999999887766543322111     1111  12


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEecCCCe-----------E-EEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          182 SLCASGGKDGVILLWDLAEGKRLYSLDAGAV-----------I-HALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       182 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      ..++.+..++.+..+|+++|+.+.+......           + .+..+ .++.+++.+.++.++.||.++++++.....
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~  269 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDA  269 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence            4677788899999999999987765431100           0 01111 245666777899999999999887654321


Q ss_pred             ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .        ..              .  .....+..+++++.||.++.+|.
T Consensus       270 ~--------~~--------------~--~p~~~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       270 S--------SY--------------Q--GPAVDDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             C--------Cc--------------c--CceEeCCEEEEECCCCeEEEEEC
Confidence            0        00              0  01124566777777888777775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2.6e-05  Score=69.74  Aligned_cols=254  Identities=15%  Similarity=0.135  Sum_probs=152.2

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ++-|.++.|+  -.++.|+|.  ++||-|+. ..|-+=|...-.     ..+....|...|..+.|.|..--        
T Consensus         8 tlpG~l~~sN--~~A~Dw~~~--GLiAygsh-slV~VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p--------   69 (1062)
T KOG1912|consen    8 TLPGPLSRSN--RNAADWSPS--GLIAYGSH-SLVSVVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSP--------   69 (1062)
T ss_pred             cCCCCCCccc--ccccccCcc--ceEEEecC-ceEEEEehhhhh-----hhhccccCccceeEEEeccCCCc--------
Confidence            4556677775  567888875  36666654 455555543211     11222233334444433332100        


Q ss_pred             EEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC--CCEEEEEeCCCcEEEEECCCcee
Q 048118           86 SVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL--QPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        86 ~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      .-.++|.  .-++|++...|.|.+||......  +-....+..++..++|-|...  ...+++.....++.+|+..+++.
T Consensus        70 ~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   70 RDLLSPSSSQLLIASADISGRIILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             hhccCccccceeEEeccccCcEEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence            0001111  12577888889999999753221  112234566778888876432  23566677778999999888887


Q ss_pred             EEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCC-c-----eEEEecCC--------------C---------
Q 048118          162 RATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEG-K-----RLYSLDAG--------------A---------  211 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~-~-----~~~~~~~~--------------~---------  211 (303)
                      ..++........++.+.| +.+++..-+..|.+-+.+.-.. +     ....+...              .         
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            776665566778899999 7778877778888888775321 1     11111110              0         


Q ss_pred             ----eEEEEEEcCC-CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC--C
Q 048118          212 ----VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG--S  284 (303)
Q Consensus       212 ----~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--~  284 (303)
                          ..-.++|+|. ++.+.......+.++|++....+..+.+...                    ++.-+.|-|++  .
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--------------------~akfv~vlP~~~rd  287 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--------------------GAKFVDVLPDPRRD  287 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--------------------CcceeEeccCCCcc
Confidence                1223678887 4667777788999999986665554443211                    11225566665  4


Q ss_pred             EEEEeecCCeEEEEe
Q 048118          285 TLFSGYTDGVIRVWG  299 (303)
Q Consensus       285 ~l~~gs~Dg~v~~w~  299 (303)
                      .|++...||.+.+|-
T Consensus       288 ~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  288 ALFCLHSNGRLTIRV  302 (1062)
T ss_pred             eEEEEecCCeEEEEE
Confidence            799999999999984

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=4.2e-06  Score=74.75  Aligned_cols=183  Identities=15%  Similarity=0.222  Sum_probs=121.4

Q ss_pred             ccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC
Q 048118           15 TDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~   94 (303)
                      .+.+++.+++   +.+|+-|.-+|.+.+.+.+....+                         ...|+..      ..+|+
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~~-------------------------~~~~s~~------~~~Ge   84 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPKT-------------------------NFDHSSS------ILEGE   84 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCcccc-------------------------ccccccc------ccCCc
Confidence            3567777775   468999999999999987532110                         1123322      56799


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC---CCEEEEEeCCCcEEEEECC--CceeEEEEcCCC
Q 048118           95 QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL---QPTIVSASWDRTVKVWNLS--NCKLRATLAGHT  169 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~dg~i~iwd~~--~~~~~~~~~~~~  169 (303)
                      +++||+.||+|.|-...+........   -..++.+++++|+-.   ...+++||..| +.++.-+  +.+-........
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            99999999999987654332222111   134588999999721   23588899888 7766431  112112344556


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC-------eEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-------VIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                      ++|.++.|.  |.++|-++.+| |+++|..+++.+..++...       ....+.|.++. .|+.+...+|++..++
T Consensus       161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK  233 (846)
T ss_pred             cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence            899999996  77888887665 8999999998887664321       23456777554 4566777788888876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=7.5e-05  Score=65.16  Aligned_cols=114  Identities=17%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             ceEEEEEcCCCCCCEEEEEeC---CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCC--CeEEEEeCCC
Q 048118          127 WVSCVRFSPNTLQPTIVSASW---DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG-GKD--GVILLWDLAE  200 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--~~v~iwd~~~  200 (303)
                      ......|+|++.. .++..+.   +..|.++|+.+++..... ...+......|+|||+.++.. +.+  ..|.++|+.+
T Consensus       189 ~~~~p~wSpDG~~-~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQT-AFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCc-EEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            4567889999743 2333222   356888999887654432 244556678899999876543 333  5678888877


Q ss_pred             CceEEEec-CCCeEEEEEEcCCCeEEEEEcCC----cEEEEeCCCCce
Q 048118          201 GKRLYSLD-AGAVIHALCFSPNRYWLCAATEQ----SIKIWDLESKSI  243 (303)
Q Consensus       201 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~----~i~iwd~~~~~~  243 (303)
                      ++.. .+. .........|+|||..++..++.    .|++.|+.+++.
T Consensus       267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            6533 332 22223345799999776665543    688888877654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.52  E-value=5.8e-06  Score=74.91  Aligned_cols=181  Identities=14%  Similarity=0.209  Sum_probs=118.4

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY  171 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  171 (303)
                      +++.++-|+.-..+..+|+.+........  .....+.-++.+.    ..+.+|...|.|.+-|.++.+...++..|++.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~--v~a~~v~imR~Nn----r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s  219 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN--VSASGVTIMRYNN----RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS  219 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeee--ccCCceEEEEecC----cEEEeecccceEEeecCCcCceeeeeeccccc
Confidence            34556666666667777775443222211  1122244444432    36888999999999999999999999999999


Q ss_pred             eeEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceEEEecCCCeEEEEEEcCC--CeEEEEEcCCcEEEEeC--
Q 048118          172 VNTVAVSPDGSLCASGGKD---------GVILLWDLAEGKRLYSLDAGAVIHALCFSPN--RYWLCAATEQSIKIWDL--  238 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~--  238 (303)
                      |.++..  .|+.|++++..         .-|+|||++.-+.+..++-.....=+.|.|.  ..+++++..|+..+-|.  
T Consensus       220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccc
Confidence            987766  58889888754         3578999987765544432222233456665  34556667788777762  


Q ss_pred             -CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          239 -ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                       .+...                   ......-...++..+++|+.+..|+.|..+|.|.+|-
T Consensus       298 lsNP~~-------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPA-------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCcc-------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             21100                   0001111233467899999999999999999999994

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.46  E-value=0.00047  Score=56.35  Aligned_cols=206  Identities=16%  Similarity=0.240  Sum_probs=122.6

Q ss_pred             eeeecCCCCCcEEEEecCCCc-EEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           19 TAIATPIDNSDMIVTASRDKS-IIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      ..++.+|.....++.+..-|+ +.+||.......               ..+.-.+...|.||.      .|+++|++|+
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~---------------~~~~a~~gRHFyGHg------~fs~dG~~Ly   66 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL---------------QRLWAPPGRHFYGHG------VFSPDGRLLY   66 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee---------------eEEcCCCCCEEecCE------EEcCCCCEEE
Confidence            456677766777777777664 567887543211               111222344577764      6999999998


Q ss_pred             EEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe----------------CCCcEEEEEC
Q 048118           98 SASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS----------------WDRTVKVWNL  156 (303)
Q Consensus        98 t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------~dg~i~iwd~  156 (303)
                      |.-.|     |.|-|||...... .+.....+--.-..+.+.|++....++-|+                .+-++.+.|.
T Consensus        67 tTEnd~~~g~G~IgVyd~~~~~~-ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~  145 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAARGYR-RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA  145 (305)
T ss_pred             EeccccCCCcEEEEEEECcCCcE-EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence            87554     6899999862211 121111121122345566765221122222                2345666677


Q ss_pred             CCceeEEE--E--cCCCCCeeEEEECCCCCEEEEEeCCC-------eEEEEeCCCCceEEEec--------CCCeEEEEE
Q 048118          157 SNCKLRAT--L--AGHTGYVNTVAVSPDGSLCASGGKDG-------VILLWDLAEGKRLYSLD--------AGAVIHALC  217 (303)
Q Consensus       157 ~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~--------~~~~v~~~~  217 (303)
                      .+++++.+  +  ..|..+|.-+++.++|..++..-..|       -+-+++  .++.+..+.        ....+-+++
T Consensus       146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence            77776655  3  33677888999999887665443333       122232  222222221        235789999


Q ss_pred             EcCCCeEEEEEc--CCcEEEEeCCCCceeeeee
Q 048118          218 FSPNRYWLCAAT--EQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       218 ~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~  248 (303)
                      +++++.++++++  .+.+.+||..+++++....
T Consensus       224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             EeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            999987776665  6789999999999886554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=6.3e-07  Score=72.41  Aligned_cols=145  Identities=14%  Similarity=0.174  Sum_probs=98.6

Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc----eeEEEEcCCCCCe
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC----KLRATLAGHTGYV  172 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i  172 (303)
                      ++.+.+..|-+-+..+.-.   +... ....|.++.|...+  +.+..|+.+|.|..+|++..    ......--|...|
T Consensus       228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV  301 (425)
T ss_pred             ecccccceeEEEEeecccc---cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence            4455666677777644321   1111 23457777787643  68899999999999999754    1222223377888


Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEEEeCCCCce---EEEecCCCeEEEEEE-----cC-CCeEEEEEcCCcEEEEeCCCCc
Q 048118          173 NTVAVSP-DGSLCASGGKDGVILLWDLAEGKR---LYSLDAGAVIHALCF-----SP-NRYWLCAATEQSIKIWDLESKS  242 (303)
Q Consensus       173 ~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~~~i~iwd~~~~~  242 (303)
                      +++..-. ++++|.+.+-+|+|++||++.-++   +.+..  ..|+..+.     .+ +|.+++++.|-..+||.++.+.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            9887655 678888888999999999986555   44432  22333332     33 3677788889999999999999


Q ss_pred             eeeeeee
Q 048118          243 IVEDLKV  249 (303)
Q Consensus       243 ~~~~~~~  249 (303)
                      ++.+++.
T Consensus       380 Ll~tipf  386 (425)
T KOG2695|consen  380 LLCTIPF  386 (425)
T ss_pred             eeeccCC
Confidence            9877654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.43  E-value=2.5e-05  Score=65.75  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=78.7

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCCC-------
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAGA-------  211 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~-------  211 (303)
                      +.|.+.|..+++...++.....+- .+ ++|+++.|.++.          .+..|.+||..+.+.+..+..+.       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            789999999999888776544333 24 999999876654          47899999999999998886533       


Q ss_pred             -eEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118          212 -VIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       212 -~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~  249 (303)
                       ....++++|+|.++.+..   ++.+.+.|+.+++++.++.+
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence             234789999998777653   78999999999999988775

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.42  E-value=0.00021  Score=61.76  Aligned_cols=132  Identities=20%  Similarity=0.203  Sum_probs=85.6

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CC-eEEEEEE
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GA-VIHALCF  218 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~-~v~~~~~  218 (303)
                      .++.++.+|.++.+|.++++.......  ........  .+..+.+++.||.+..+|..+++.+..... .. ...+...
T Consensus       243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i  318 (377)
T TIGR03300       243 QVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV  318 (377)
T ss_pred             EEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence            577788899999999998876655432  11112222  356777788899999999999988766521 11 1122222


Q ss_pred             cCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       219 s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                       .++.+++.+.+|.|+++|.++++++..++..-..                   ...+-..  -+..|+.++.||.|..|
T Consensus       319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-------------------~~~sp~~--~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-------------------IASPPVV--VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-------------------cccCCEE--ECCEEEEEeCCceEEEe
Confidence             2456677778999999999999988765532100                   0001111  13458889999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=1.4e-06  Score=70.39  Aligned_cols=129  Identities=17%  Similarity=0.255  Sum_probs=95.1

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce---eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      .++.|.++.|...+.++..|+..|.|...|+....   .+..+. -.|...|+++..-.-. +.++++.+.+|.|.+||+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s-~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFS-QQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccc-cceEeeccCcCceeEeee
Confidence            45678899999988999999999999999985321   111111 1255566766554422 357888899999999999


Q ss_pred             CCcee---EEEEcCCCCCe--eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC
Q 048118          157 SNCKL---RATLAGHTGYV--NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG  210 (303)
Q Consensus       157 ~~~~~---~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  210 (303)
                      +--++   +.++.+|.+.-  .-+.+++....+++++.|...+||.++.++.+.+++..
T Consensus       329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            87666   78888886432  23456777778888999999999999999988887643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.40  E-value=0.00064  Score=55.02  Aligned_cols=217  Identities=15%  Similarity=0.138  Sum_probs=128.3

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe-eCCCEEEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS-IDNRQIVS   98 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~-~~~~~l~t   98 (303)
                      +..|.+....++++--..+.|..|+........                          -.......+.+. +++ .++.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~g-~l~v   56 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------IDLPGPNGMAFDRPDG-RLYV   56 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------------EESSSEEEEEEECTTS-EEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------------EecCCCceEEEEccCC-EEEE
Confidence            456676556677777778888888775432110                          011225677888 554 5555


Q ss_pred             EeCCCcEEEEecCCceeeeeecC--CC-CccceEEEEEcCCCCCCEEEEEeCC--------CcEEEEECCCceeEEEEcC
Q 048118           99 ASRDRTIKLWNTLGECKYTIQEG--DA-HTEWVSCVRFSPNTLQPTIVSASWD--------RTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        99 ~~~d~~i~vw~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~~~~~~~d--------g~i~iwd~~~~~~~~~~~~  167 (303)
                      +...+ +.++|........+...  .. .....+.+++.|++  ...++-...        |.|..++.. ++...... 
T Consensus        57 ~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-  131 (246)
T PF08450_consen   57 ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-  131 (246)
T ss_dssp             EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred             EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence            55544 45558655433222221  11 34557889999986  344443322        457777776 44433332 


Q ss_pred             CCCCeeEEEECCCCCEEE-EEeCCCeEEEEeCCCCce-------EEEecCC-CeEEEEEEcCCCeEEE-EEcCCcEEEEe
Q 048118          168 HTGYVNTVAVSPDGSLCA-SGGKDGVILLWDLAEGKR-------LYSLDAG-AVIHALCFSPNRYWLC-AATEQSIKIWD  237 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~-------~~~~~~~-~~v~~~~~s~~~~~l~-~~~~~~i~iwd  237 (303)
                      .-...+.++|+|+++.|. +-+..+.|..+++.....       +..+... ...-.+++.++|.+.+ ....+.|.++|
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            245568999999998775 556788999999853221       1222322 2467799998886544 44688999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE-cCCCCEEEEe
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW-SVDGSTLFSG  289 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~~~~l~~g  289 (303)
                      .+ ++++..+.+..                    ..+++++| .|+.+.|++.
T Consensus       212 p~-G~~~~~i~~p~--------------------~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  212 PD-GKLLREIELPV--------------------PRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TT-SCEEEEEE-SS--------------------SSEEEEEEESTTSSEEEEE
T ss_pred             CC-ccEEEEEcCCC--------------------CCEEEEEEECCCCCEEEEE
Confidence            87 77777665421                    13477888 4676655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=1.9e-07  Score=84.08  Aligned_cols=198  Identities=19%  Similarity=0.287  Sum_probs=130.0

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..++.|....+|++|+.. .+.|+.|+-.|.|++++...+..                       .+.+.+|.++|+.+.
T Consensus      1095 ~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~SavT~ve 1150 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQSAVTLVE 1150 (1516)
T ss_pred             hhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccc-----------------------ccccccccccccccc
Confidence            467888889999999965 57899999999999998865321                       124567888888888


Q ss_pred             EeeCCCEEEEEeCCCc--EEEEecCCceeeeeecCCCCc-cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           89 FSIDNRQIVSASRDRT--IKLWNTLGECKYTIQEGDAHT-EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~--i~vw~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      =+.+|..+++.+.-..  .-+|+.... ..     ..|+ ..-.+++|+... +.. +.|+......+||..++....++
T Consensus      1151 Ps~dgs~~Ltsss~S~PlsaLW~~~s~-~~-----~~Hsf~ed~~vkFsn~~-q~r-~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1151 PSVDGSTQLTSSSSSSPLSALWDASST-GG-----PRHSFDEDKAVKFSNSL-QFR-ALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             ccCCcceeeeeccccCchHHHhccccc-cC-----ccccccccceeehhhhH-HHH-HhcccccceEEEecccCcHHHHh
Confidence            7888887776655433  457886431 11     1121 123578887653 333 33445567889999987654442


Q ss_pred             -cC---CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118          166 -AG---HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       166 -~~---~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~  241 (303)
                       .+   .+-.-+...|+|+..+++   .||.  +||++..+.++.|+.-..-..=.|+|.|.-+..-+    .|||+++.
T Consensus      1223 lt~~~~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF 1293 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTF 1293 (1516)
T ss_pred             cCcchhhhhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHH
Confidence             21   111225678999887764   5665  59999888887776433222335889886554433    48999887


Q ss_pred             ceeeee
Q 048118          242 SIVEDL  247 (303)
Q Consensus       242 ~~~~~~  247 (303)
                      +++..+
T Consensus      1294 ~lLh~V 1299 (1516)
T KOG1832|consen 1294 KLLHSV 1299 (1516)
T ss_pred             HHHhcC
Confidence            776543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.37  E-value=9.3e-05  Score=58.78  Aligned_cols=39  Identities=28%  Similarity=0.386  Sum_probs=33.4

Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  207 (303)
                      ...|..|.+||||+.|++...+|.|.+|++.+-.....+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            467889999999999999999999999999876555444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.37  E-value=0.00049  Score=55.26  Aligned_cols=186  Identities=16%  Similarity=0.163  Sum_probs=104.5

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL  107 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~v  107 (303)
                      .+.+++++.++.|..||...++......   +.              +.+.   ..    . ...+..++.+..++.+..
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~---~~--------------~~~~---~~----~-~~~~~~v~v~~~~~~l~~   90 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFD---LP--------------GPIS---GA----P-VVDGGRVYVGTSDGSLYA   90 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEE---CS--------------SCGG---SG----E-EEETTEEEEEETTSEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEee---cc--------------cccc---ce----e-eecccccccccceeeeEe
Confidence            3567777899999999986554221111   00              0000   00    1 123345555667778888


Q ss_pred             Eec-CCceeeeeecCC--CCc-cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC----------ee
Q 048118          108 WNT-LGECKYTIQEGD--AHT-EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY----------VN  173 (303)
Q Consensus       108 w~~-~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i~  173 (303)
                      +|. .++..+......  ... .......+.    ...++.+..++.|..+|+++++.+.........          +.
T Consensus        91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN  166 (238)
T ss_dssp             EETTTSCEEEEEEE-SSCTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred             cccCCcceeeeeccccccccccccccCceEe----cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence            884 344444421111  111 011122222    235777888999999999999987776553322          11


Q ss_pred             EEEECCCCCEEEEEeCCCe-EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118          174 TVAVSPDGSLCASGGKDGV-ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       174 ~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      .-....++ .+..++.++. +.+ |+.+++.+.... ......+....++.+++.+.++.|.+||+++++.+.
T Consensus       167 ~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  167 GSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             cceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            22222344 6666666775 555 999998776544 333333223334555556679999999999998753

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=1.7e-05  Score=70.82  Aligned_cols=152  Identities=15%  Similarity=0.195  Sum_probs=108.0

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC----------CCCEEEEEeCCCcEE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT----------LQPTIVSASWDRTVK  152 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~dg~i~  152 (303)
                      .-.+++|+|.| ++|-|+. ..|.+-|...-  ..++..+.|...|..++|.|..          .+..++++...|.|.
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            34578899877 5665654 45777775432  2244445677889999998743          234678888899999


Q ss_pred             EEECCCceeEEEEcCCCCCeeEEEECC---CC-CEEEEEeCCCeEEEEeCCCCceEEEecCCCe-EEEEEEcCCC--eEE
Q 048118          153 VWNLSNCKLRATLAGHTGYVNTVAVSP---DG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNR--YWL  225 (303)
Q Consensus       153 iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-v~~~~~s~~~--~~l  225 (303)
                      +||......+..+..|..++..+.|-|   +. ..|+.-....++.+||..+|+.++....... ..++.+.|-.  .+.
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~  172 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC  172 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence            999988887778888899999999865   33 3455555678999999999999988876544 4457777743  344


Q ss_pred             EEEcCCcEEEEeC
Q 048118          226 CAATEQSIKIWDL  238 (303)
Q Consensus       226 ~~~~~~~i~iwd~  238 (303)
                      ..+..|.+.+-+.
T Consensus       173 ~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  173 VLGSKGFVLSCKD  185 (1062)
T ss_pred             EEccCceEEEEec
Confidence            4556666666553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=8.6e-05  Score=66.70  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ..+.+++++  ++.|+-|..+|.|.+++..+.. ....   .|+..        +....++++|+.||.|.|-.+.+.+.
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---DHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---ccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            445566655  4678899999999999876654 2111   12111        22235899999999999998877665


Q ss_pred             EEEEcCCCCCeeEEEECCC-----CCEEEEEeCCCeEEEEeCC---CCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcE
Q 048118          162 RATLAGHTGYVNTVAVSPD-----GSLCASGGKDGVILLWDLA---EGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSI  233 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~v~iwd~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i  233 (303)
                      ..++.- ..++.+++++|+     .+.+++|+..| +.++.-+   ....+......+.|.++.|.  |.++|-+.|--|
T Consensus       106 ~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv  181 (846)
T KOG2066|consen  106 ITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV  181 (846)
T ss_pred             ceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc
Confidence            554442 468999999998     46889999888 7776532   11222122346789999985  678899999999


Q ss_pred             EEEeCCCCceeeeeee
Q 048118          234 KIWDLESKSIVEDLKV  249 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~  249 (303)
                      ++||+.+++.+..++.
T Consensus       182 ~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPP  197 (846)
T ss_pred             EEEeccccceeeccCC
Confidence            9999999888876654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=6.5e-05  Score=62.26  Aligned_cols=80  Identities=11%  Similarity=0.207  Sum_probs=62.9

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      -+.+|...|-.++|+|.+.+++..++-+.+|+|.|+......                       ..|..| ..+++++|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-----------------------ssy~a~-~~~wSC~w  243 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-----------------------SSYIAY-NQIWSCCW  243 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceee-----------------------eheecc-CCceeeee
Confidence            456677889999999998889999999999999999753211                       124445 68999999


Q ss_pred             eeCC-CEEEEEeCCCcEEEEecCCc
Q 048118           90 SIDN-RQIVSASRDRTIKLWNTLGE  113 (303)
Q Consensus        90 ~~~~-~~l~t~~~d~~i~vw~~~~~  113 (303)
                      ..+. .++..|...|.|.+||....
T Consensus       244 Dlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  244 DLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ccCCcceeEEeccCceEEEEEccCC
Confidence            9875 46788889999999997543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.23  E-value=0.0004  Score=65.35  Aligned_cols=199  Identities=16%  Similarity=0.231  Sum_probs=121.8

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC--C--
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--S--  157 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~--~--  157 (303)
                      +.|.++.|..++..++.+..+|.|.+.|........+   ..-...|.+.+|+|+.  ..++-.+..+.+.+-+-  .  
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv---g~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV---GNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeee---eeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccch
Confidence            5799999999999888899999999987644322211   1234568999999986  34444555555544321  0  


Q ss_pred             -----------Cce--------eEEEEcCCC---------------------CCeeEEEECCCCCEEEEEe----CC-Ce
Q 048118          158 -----------NCK--------LRATLAGHT---------------------GYVNTVAVSPDGSLCASGG----KD-GV  192 (303)
Q Consensus       158 -----------~~~--------~~~~~~~~~---------------------~~i~~~~~~~~~~~l~~~~----~d-~~  192 (303)
                                 ..+        ....+.+..                     +.=+++.|--||+++|+..    .+ +.
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence                       000        001122110                     1123588988999998832    23 79


Q ss_pred             EEEEeCCCCceE-EEecCCCeEEEEEEcCCCeEEEEE----cCCcEEEEeCCCCceeeeeeeccccccccccCccceeec
Q 048118          193 ILLWDLAEGKRL-YSLDAGAVIHALCFSPNRYWLCAA----TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTI  267 (303)
Q Consensus       193 v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (303)
                      +++||.+ |..- ...+....-.+++|.|.|.++++-    +++.|.+|.-+ |-.-.++.+.                .
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~----------------~  285 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLP----------------F  285 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccC----------------C
Confidence            9999976 3211 111223445679999999888764    46679999843 2111111110                0


Q ss_pred             cccceeEEEEEEcCCCCEEEE---eecCCeEEEEecccC
Q 048118          268 KKKNIYCTSLNWSVDGSTLFS---GYTDGVIRVWGIGRY  303 (303)
Q Consensus       268 ~~~~~~~~~~~~sp~~~~l~~---gs~Dg~v~~w~~~~~  303 (303)
                      .-....|..++|+.++..|++   ......|++|=+++|
T Consensus       286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            001112678999999998887   555556999999887

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=4.8e-05  Score=66.20  Aligned_cols=72  Identities=21%  Similarity=0.346  Sum_probs=58.3

Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCC
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLES  240 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~  240 (303)
                      ....+.+++++|+...|+.|+.||.|.+||...+..... ...-....++|+|+|.++++++ .|.+.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            456899999999999999999999999999877644322 4445677899999997776665 59999999753

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00097  Score=60.71  Aligned_cols=209  Identities=14%  Similarity=0.192  Sum_probs=124.1

Q ss_pred             eeecccccccccc-eeeeecCCCCCcEEEEecCCCc-----EEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee
Q 048118            5 LVLKGTMRAHTDM-VTAIATPIDNSDMIVTASRDKS-----IIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV   78 (303)
Q Consensus         5 ~~~~~~~~~h~~~-v~~v~~~~~~~~~~~t~s~d~~-----i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   78 (303)
                      +.+...+.++... |+.+- ..+..++|++.+.|+.     ++||++.+..+...         ..++....+.+. ...
T Consensus        54 ~~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s---------P~c~~~~ri~~~-~np  122 (933)
T KOG2114|consen   54 FQLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS---------PQCLYEHRIFTI-KNP  122 (933)
T ss_pred             ceeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEecccccCCCCC---------cceeeeeeeecc-CCC
Confidence            3344456666666 44443 3344478999888765     89999976432210         111211111110 011


Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEe--cCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN--TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      -...++.+++.+.+-..++.|=.+|.|..+.  +..+.............+|+.+.+..++.. .+. ......|..|.+
T Consensus       123 ~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s-~lF-v~Tt~~V~~y~l  200 (933)
T KOG2114|consen  123 TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS-VLF-VATTEQVMLYSL  200 (933)
T ss_pred             CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce-eEE-EEecceeEEEEe
Confidence            1345778899999988899998999988874  221111223333445678999999876532 223 334567888888


Q ss_pred             CCcee-EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118          157 SNCKL-RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       157 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (303)
                      .+..+ ...+..|..++.|..+++....|++++ +.-+.+|+.....+-.++..+..-....+ ..|.++++.
T Consensus       201 ~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~-~~g~~L~v~  271 (933)
T KOG2114|consen  201 SGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVF-SFGLLLCVT  271 (933)
T ss_pred             cCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEE-ecCEEEEEE
Confidence            75443 444667777889999988666566665 34689999876655555554433333333 245555554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.13  E-value=0.00019  Score=62.55  Aligned_cols=77  Identities=14%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      .....|.+++++|+.+.++.|+.||+|.+||.........+    ..-....++|||++  ..+++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k----a~~~P~~iaWHp~g--ai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK----AEFIPTLIAWHPDG--AIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee----ecccceEEEEcCCC--cEEEEEcCCceEEEEEeec
Confidence            46678999999999999999999999999997544332221    12335779999987  5788999999999999865


Q ss_pred             cee
Q 048118          159 CKL  161 (303)
Q Consensus       159 ~~~  161 (303)
                      ...
T Consensus       331 spi  333 (545)
T PF11768_consen  331 SPI  333 (545)
T ss_pred             Ccc
Confidence            443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.03  E-value=0.00042  Score=61.96  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             CCcEEEEECCC-----ceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCce------------EEEecC
Q 048118          148 DRTVKVWNLSN-----CKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKR------------LYSLDA  209 (303)
Q Consensus       148 dg~i~iwd~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~------------~~~~~~  209 (303)
                      ++.|.+.|..+     .+....+.- ......+.++|||+++++++ .+.+|.|.|+.+.+.            +.++..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            56799999887     344444443 34568899999999886665 599999999987553            333444


Q ss_pred             CCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCC
Q 048118          210 GAVIHALCFSPNRYWLC-AATEQSIKIWDLES  240 (303)
Q Consensus       210 ~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~  240 (303)
                      +..-...+|.++|...+ ..-|.+|..||+..
T Consensus       374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            44444578988876443 34588999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.02  E-value=0.0053  Score=50.33  Aligned_cols=200  Identities=15%  Similarity=0.146  Sum_probs=111.9

Q ss_pred             EEEEEee-CCCEEEEEeCCCc-EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-----eCCCcEEEEECC
Q 048118           85 LSVAFSI-DNRQIVSASRDRT-IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-----SWDRTVKVWNLS  157 (303)
Q Consensus        85 ~~i~~~~-~~~~l~t~~~d~~-i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~dg~i~iwd~~  157 (303)
                      ..++.+| .+..++.+-.-|. ..+||..+...............--...|++++.  .+.+.     ...|.|-+||..
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc
Confidence            3456666 3444555555543 4467765433322211111111112366888873  44443     335889999998


Q ss_pred             -CceeEEEEcCCCCCeeEEEECCCCCEEEEEe-------CCC-----------eEEEEeCCCCceEEEec-----CCCeE
Q 048118          158 -NCKLRATLAGHTGYVNTVAVSPDGSLCASGG-------KDG-----------VILLWDLAEGKRLYSLD-----AGAVI  213 (303)
Q Consensus       158 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~d~-----------~v~iwd~~~~~~~~~~~-----~~~~v  213 (303)
                       +-+.+.++..|--.-..+.+.|+|+.|+++-       +.|           .+...|..+|+.+.+..     ....+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             5566777777665567788999998877662       112           33344555666554432     23468


Q ss_pred             EEEEEcCCCeEEEEEcC-C-------cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE
Q 048118          214 HALCFSPNRYWLCAATE-Q-------SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST  285 (303)
Q Consensus       214 ~~~~~s~~~~~l~~~~~-~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  285 (303)
                      +.+++.++|..+.+... |       -+.+++...  .+..+..             +......-..|+-++++++++.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~-------------p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA-------------PEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccC-------------ChHHHHhhCCceEEEEEeCCCCE
Confidence            88888888876665531 1       133333221  1111111             00011223467889999999998


Q ss_pred             EEEeec-CCeEEEEecc
Q 048118          286 LFSGYT-DGVIRVWGIG  301 (303)
Q Consensus       286 l~~gs~-Dg~v~~w~~~  301 (303)
                      +++.|. -|.+.+||..
T Consensus       231 ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  231 IAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             EEEECCCCCEEEEEECC
Confidence            865554 6788999763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.01  E-value=0.0017  Score=56.86  Aligned_cols=142  Identities=15%  Similarity=0.170  Sum_probs=80.1

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      .+..+.++|+|+.++.+ .||.-.++..........       +.-....|.+.   ..+++....+.|.++.-.+.+..
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-------G~g~~~vw~~~---n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-------GSGLSFVWSSR---NRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-------EE-SEEEE-TS---SEEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-------CceeEEEEecC---ccEEEEECCCeEEEEEcCccccc
Confidence            45689999999988875 457777776433222111       11234667764   35777777888999743232222


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~  241 (303)
                      ..++.. ..+..+-.   |.+|+..+.+ .|.+||..+++.+..++... |..+.|++++.+++..++..+++++.+..
T Consensus       103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            223221 12333322   7777766554 89999999999999988653 88999999999999988889999876443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.0081  Score=55.04  Aligned_cols=197  Identities=15%  Similarity=0.215  Sum_probs=116.5

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC-EEEEEEeeCCCE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD-VLSVAFSIDNRQ   95 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~-i~~i~~~~~~~~   95 (303)
                      +|++++  +. ...+|.|+.||.|-+.+-.-.      ...                  .+.++... |..+-...+..+
T Consensus        27 ~isc~~--s~-~~~vvigt~~G~V~~Ln~s~~------~~~------------------~fqa~~~siv~~L~~~~~~~~   79 (933)
T KOG2114|consen   27 AISCCS--SS-TGSVVIGTADGRVVILNSSFQ------LIR------------------GFQAYEQSIVQFLYILNKQNF   79 (933)
T ss_pred             ceeEEc--CC-CceEEEeeccccEEEecccce------eee------------------hheecchhhhhHhhcccCceE
Confidence            566653  33 467999999999888764211      001                  12233333 222322333357


Q ss_pred             EEEEeCCCc-----EEEEecCCc-----eee----eeec-CCC-CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--
Q 048118           96 IVSASRDRT-----IKLWNTLGE-----CKY----TIQE-GDA-HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS--  157 (303)
Q Consensus        96 l~t~~~d~~-----i~vw~~~~~-----~~~----~~~~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~--  157 (303)
                      |++.+.|+.     |++|++...     +..    .+.. ..+ ...++.+++.+.+-  ..+++|-.+|.|..+.-.  
T Consensus        80 L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   80 LFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             EEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcch
Confidence            777777654     899987421     110    0111 111 24466778887762  478889999999988532  


Q ss_pred             -CceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEEe-cCCCeEEEEEEcCCCeEEEEEcCCcE
Q 048118          158 -NCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYSL-DAGAVIHALCFSPNRYWLCAATEQSI  233 (303)
Q Consensus       158 -~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~i  233 (303)
                       +.-.+..+. ...++|+.+++..++..++.+..-.+|.+|.+....+ +... ..+...++.++++...-+.++...-+
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l  237 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL  237 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceE
Confidence             111112221 2357999999988887633333455799999874442 2323 34567888888877664556666789


Q ss_pred             EEEeCCCCc
Q 048118          234 KIWDLESKS  242 (303)
Q Consensus       234 ~iwd~~~~~  242 (303)
                      ++|+....+
T Consensus       238 ~fY~sd~~~  246 (933)
T KOG2114|consen  238 YFYDSDGRG  246 (933)
T ss_pred             EEEcCCCcc
Confidence            999986543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=0.00017  Score=62.32  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-----------CCeEEEEe
Q 048118          129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-----------DGVILLWD  197 (303)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d~~v~iwd  197 (303)
                      +-+.|+|.+  .++++-- ..-|.+|--.+....+.+. | ..|.-+.|||+.+||++=+.           ...+.|||
T Consensus       214 tyv~wSP~G--TYL~t~H-k~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKG--TYLVTFH-KQGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCc--eEEEEEe-ccceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            458899986  3566543 3446778766655445454 3 36788999999999988652           25899999


Q ss_pred             CCCCceEEEecC---C-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCcee
Q 048118          198 LAEGKRLYSLDA---G-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV  244 (303)
Q Consensus       198 ~~~~~~~~~~~~---~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~  244 (303)
                      +++|.....+..   . ....-+.||-|+.++|....++|.||+...-.++
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ll  339 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLL  339 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeee
Confidence            999988777653   2 2344578999999999888899999997664443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.91  E-value=0.0027  Score=43.61  Aligned_cols=90  Identities=14%  Similarity=0.230  Sum_probs=63.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEE
Q 048118          139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF  218 (303)
Q Consensus       139 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  218 (303)
                      ...|+.|+.|..||+|+-  .+...++.. .+.|+.+.-... ..|+-+..+|+|-+|+-  .+.++.+.....+.++++
T Consensus        15 ~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~   88 (111)
T PF14783_consen   15 ENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAF   88 (111)
T ss_pred             cceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEE
Confidence            368999999999999974  355666654 456777766654 57888999999999975  456666666666666655


Q ss_pred             cC-C--C--eEEEEEcCCcEE
Q 048118          219 SP-N--R--YWLCAATEQSIK  234 (303)
Q Consensus       219 s~-~--~--~~l~~~~~~~i~  234 (303)
                      .. +  |  .++++-++|+|.
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEE
Confidence            43 2  2  466666777764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.90  E-value=0.013  Score=50.98  Aligned_cols=134  Identities=18%  Similarity=0.199  Sum_probs=86.2

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CCeEEEEEE
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCF  218 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~  218 (303)
                      .++.++.+|.+..+|..+++...+..-  .....+..  .+..+..++.+|.+..+|..+++.+.+...  .....+...
T Consensus       258 ~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v  333 (394)
T PRK11138        258 VVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL  333 (394)
T ss_pred             EEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence            466677899999999998876544321  11112222  356677788899999999999987765432  111122122


Q ss_pred             cCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       219 s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                       -++.+++...+|.+++.|.++++++...++...                  ... .+-..  .+..|++++.||.|..+
T Consensus       334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~------------------~~~-s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        334 -YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS------------------GFL-SEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC------------------cce-eCCEE--ECCEEEEEeCCceEEEE
Confidence             156777788899999999999988766543100                  000 00111  24578899999999887


Q ss_pred             ec
Q 048118          299 GI  300 (303)
Q Consensus       299 ~~  300 (303)
                      ++
T Consensus       392 ~~  393 (394)
T PRK11138        392 TR  393 (394)
T ss_pred             eC
Confidence            64

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00012  Score=64.07  Aligned_cols=90  Identities=24%  Similarity=0.317  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee-EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN-TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS  206 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  206 (303)
                      +.-+.|+|..  ..++.+..+|.+.++.++ .+...++.-+...++ +++|.|||+.|++|-.||+|++.|+.++..+..
T Consensus        23 i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            5567798864  578899999999999987 666777776677777 999999999999999999999999999988776


Q ss_pred             --ecCCCeEEEEEEcC
Q 048118          207 --LDAGAVIHALCFSP  220 (303)
Q Consensus       207 --~~~~~~v~~~~~s~  220 (303)
                        +.....|..+-|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence              34455666666653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.0007  Score=59.18  Aligned_cols=136  Identities=15%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEE-eCCCCceEEE
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW-DLAEGKRLYS  206 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw-d~~~~~~~~~  206 (303)
                      ...+.++|++.   ++..+.+|.-.+|.........     .+....+.|.+.+ .+|+-...++|.++ ++. .+....
T Consensus        35 p~~ls~npngr---~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~-~~~~k~  104 (443)
T PF04053_consen   35 PQSLSHNPNGR---FVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK-NEVVKS  104 (443)
T ss_dssp             -SEEEE-TTSS---EEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE-E-TT--
T ss_pred             CeeEEECCCCC---EEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCc-cccceE
Confidence            46788999862   3444778888888854433322     2345668888854 46666668899996 442 222233


Q ss_pred             ecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118          207 LDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL  286 (303)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  286 (303)
                      +..+..+..+-.   |.+|...+++.|.+||+++++++..+.+.                      .+..+.|++++.++
T Consensus       105 i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----------------------~vk~V~Ws~~g~~v  159 (443)
T PF04053_consen  105 IKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----------------------AVKYVIWSDDGELV  159 (443)
T ss_dssp             ---SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----------------------E-EEEEE-TTSSEE
T ss_pred             EcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----------------------CCcEEEEECCCCEE
Confidence            443444555432   77888888889999999999998876542                      13568899999999


Q ss_pred             EEeecCCeEEEEe
Q 048118          287 FSGYTDGVIRVWG  299 (303)
Q Consensus       287 ~~gs~Dg~v~~w~  299 (303)
                      +..+.|. +.+++
T Consensus       160 al~t~~~-i~il~  171 (443)
T PF04053_consen  160 ALVTKDS-IYILK  171 (443)
T ss_dssp             EEE-S-S-EEEEE
T ss_pred             EEEeCCe-EEEEE
Confidence            9888664 44443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.86  E-value=0.0096  Score=56.59  Aligned_cols=112  Identities=15%  Similarity=0.258  Sum_probs=69.0

Q ss_pred             EEEEcCCCCCCEEEE-----EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCCC
Q 048118          130 CVRFSPNTLQPTIVS-----ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG---KDGVILLWDLAEG  201 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~  201 (303)
                      .+.|--++  .++++     ......|++||-+ +.+...-....+--.+++|-|.|..+++-.   +|+.|.++.-+.-
T Consensus       200 ~IsWRgDg--~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  200 SISWRGDG--EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             eEEEccCC--cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence            36666554  24444     2223789999975 443322222233446799999999887753   4667888875421


Q ss_pred             c---eEEEecCCC-eEEEEEEcCCCeEEEE---EcCC-cEEEEeCCCCcee
Q 048118          202 K---RLYSLDAGA-VIHALCFSPNRYWLCA---ATEQ-SIKIWDLESKSIV  244 (303)
Q Consensus       202 ~---~~~~~~~~~-~v~~~~~s~~~~~l~~---~~~~-~i~iwd~~~~~~~  244 (303)
                      +   -...++... .+..++|+.++.+|++   ...+ .|++|-+.+..-.
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence            1   111222233 3899999999988876   3344 4999998776443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.85  E-value=9e-06  Score=71.08  Aligned_cols=203  Identities=15%  Similarity=0.187  Sum_probs=120.9

Q ss_pred             CEEEEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE----eCCCcEEEEEC
Q 048118           83 DVLSVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA----SWDRTVKVWNL  156 (303)
Q Consensus        83 ~i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~dg~i~iwd~  156 (303)
                      .+.|+++..+  ...++.|.++|.|-+-..............++..+.++++|++-+. ..++.|    -.|..+.|||+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt-n~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT-NHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccH-HHHHhhhhhhcccCCccceec
Confidence            4566766554  3578899999999887654322111222234555677889987532 234443    23678999998


Q ss_pred             CCc--eeE--EEEcC-CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC-CCeEEEEEcC
Q 048118          157 SNC--KLR--ATLAG-HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP-NRYWLCAATE  230 (303)
Q Consensus       157 ~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  230 (303)
                      .+.  .+.  ..+.+ -.....+++|-.+.+++++|...+.+.++|++....-........++.+..+| ...+++...+
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d  216 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD  216 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence            764  111  11222 22345578888888899999999999999998432211112233566677777 5678888889


Q ss_pred             CcEEEEeC-CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee-cCCeEEEEecc
Q 048118          231 QSIKIWDL-ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       231 ~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs-~Dg~v~~w~~~  301 (303)
                      |.|.+||. ++-+-.  +. .+.     ....       ...-....++|.|... ++++.. +.++|+++|+.
T Consensus       217 g~iAiwD~~rnienp--l~-~i~-----~~~N-------~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  217 GDIAIWDTYRNIENP--LQ-IIL-----RNEN-------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CceeeccchhhhccH--HH-HHh-----hCCC-------CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            99999994 221100  00 000     0000       0111346789999754 555554 46788999874

>smart00320 WD40 WD40 repeats

Probab=97.83  E-value=8.9e-05  Score=40.01  Aligned_cols=38  Identities=58%  Similarity=0.880  Sum_probs=32.8

Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD  197 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  197 (303)
                      ++...+..|...+.++.|++.++.+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556667888999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00021  Score=64.82  Aligned_cols=108  Identities=13%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             EEEEeeCCCEEEEEe----CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           86 SVAFSIDNRQIVSAS----RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~----~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      -++|+|...+++.++    ..|+|.||--.+++...+.    ..-.+.+++|||..  ..++.|=..|.+.+|...+.+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt----~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT----YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc----cceehhhhccChHH--HHHhhccccceeEEEecCCcee
Confidence            457888877777665    3578888865454322111    11124579999974  4567777789999998877666


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA  199 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~  199 (303)
                      ......|..+|..+.|||+|..++++..=|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66667799999999999999999999999999999765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.81  E-value=0.00049  Score=63.01  Aligned_cols=141  Identities=13%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeC------
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASR------  101 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~------  101 (303)
                      .+++.+|...|+|-+=|....+                       ....+.+|++.|..++  -.|..|+|||.      
T Consensus       187 nr~lf~G~t~G~V~LrD~~s~~-----------------------~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~  241 (1118)
T KOG1275|consen  187 NRNLFCGDTRGTVFLRDPNSFE-----------------------TIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYN  241 (1118)
T ss_pred             CcEEEeecccceEEeecCCcCc-----------------------eeeeeeccccceeeee--ccCCeEEEeeccccccc
Confidence            3566666667777766654322                       1124567787776544  45778888884      


Q ss_pred             ---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE---CCCceeEE-EEcCCCCCeeE
Q 048118          102 ---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN---LSNCKLRA-TLAGHTGYVNT  174 (303)
Q Consensus       102 ---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd---~~~~~~~~-~~~~~~~~i~~  174 (303)
                         |..|+|||++..........  +.. ..-++|+|.- ...++..+..|...+.|   +.+..... .+......+..
T Consensus       242 l~~D~FvkVYDLRmmral~PI~~--~~~-P~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~  317 (1118)
T KOG1275|consen  242 LAMDPFVKVYDLRMMRALSPIQF--PYG-PQFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA  317 (1118)
T ss_pred             ccccchhhhhhhhhhhccCCccc--ccC-chhhhhcccc-cceEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence               66789999864332221111  111 2347788864 34678889999999998   43332222 22223345999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEe
Q 048118          175 VAVSPDGSLCASGGKDGVILLWD  197 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd  197 (303)
                      +.++++++.++.|..+|.|.+|-
T Consensus       318 fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  318 FDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecCCCceEEEecccCcEeeec
Confidence            99999999999999999999997

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.79  E-value=0.02  Score=49.56  Aligned_cols=231  Identities=11%  Similarity=0.161  Sum_probs=116.1

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc-ce-e------eeeec--CCCcceEEEE--eCCC---C-----c
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GV-A------RRRLT--GHSHFVQDVV--LSSD---G-----Q   76 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~-~~-~------~~~~~--~~~~~i~~~~--~~~~---~-----~   76 (303)
                      .|+++++.++..+ |+.|-..|.+-+|+......-. .. .      ..++.  .....+.++.  ..+.   +     -
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5889999988765 6778888999999886432110 00 0      00010  1111222210  0011   0     1


Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec------CCCCccceEEEEEcC---CCC---CCEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE------GDAHTEWVSCVRFSP---NTL---QPTIVS  144 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~------~~~~~~~i~~~~~~~---~~~---~~~~~~  144 (303)
                      +....++|.+++.+ +-..++.|..+|.+.|.|.++........      .......+.++.|..   .+.   ...+++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            23457899999987 44589999999999999997764432211      112344677787763   211   246888


Q ss_pred             EeCCCcEEEEECCC---ceeE----EEEcCCCCCeeEEE-ECCC-----------------C---CEEEEEeCCCeEEEE
Q 048118          145 ASWDRTVKVWNLSN---CKLR----ATLAGHTGYVNTVA-VSPD-----------------G---SLCASGGKDGVILLW  196 (303)
Q Consensus       145 ~~~dg~i~iwd~~~---~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~d~~v~iw  196 (303)
                      |+..|.+.+|.+..   +...    .....+.++|..+. ++.+                 +   +-+++...+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            99999999997741   2111    11223445555443 3211                 0   223444457789999


Q ss_pred             eCCCCceEEEec-CCCeEEEEEEc-----CCC-eEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          197 DLAEGKRLYSLD-AGAVIHALCFS-----PNR-YWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       197 d~~~~~~~~~~~-~~~~v~~~~~s-----~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      ...+.+..+... ....+..+++-     ..+ .+++...+|.|++|.+-.=+.+.+++.
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            988777655443 22334444452     233 355667899999999977666665554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.77  E-value=0.0041  Score=42.71  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             eeEEEECC---CC-CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118          172 VNTVAVSP---DG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       172 i~~~~~~~---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  238 (303)
                      |+++++..   +| +.|++|+.|..|++|+-  .+.+..+.....+.+++-...+.+..+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            45555433   33 57999999999999963  46777887788899988888888888888999999975

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.72  E-value=0.0032  Score=56.52  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             CCeEEEEeCCC-----CceEEEecCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCcc
Q 048118          190 DGVILLWDLAE-----GKRLYSLDAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATT  262 (303)
Q Consensus       190 d~~v~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (303)
                      +++|.+.|.++     .+.+..+..+.....+.++|||.++.++.  ++.+.++|+++.+..-.-+++....      ..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~------vv  368 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA------VV  368 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce------EE
Confidence            35688888877     45566677777888899999998776654  7899999997754321111110000      00


Q ss_pred             ceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          263 ATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       263 ~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ....+   .......+|.++|....|-.-|..|..|++..
T Consensus       369 aevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        369 AEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Eeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            00011   11224567899998888889999999999853

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.68  E-value=0.017  Score=50.30  Aligned_cols=147  Identities=14%  Similarity=0.125  Sum_probs=85.4

Q ss_pred             CCEEEEEeCCCcEEEEecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118           93 NRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY  171 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  171 (303)
                      +..++.++.++.+.-+|.. ++..+.....    ..+.+   +|--....++.+..++.+..+|.++++....+......
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA----GEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC----Cceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            4456667788888888864 3333322211    11111   11001135667788999999999999877665432111


Q ss_pred             eeE-EEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe--------EEEEEEcC---CCeEEEEEcCCcEEEEe
Q 048118          172 VNT-VAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--------IHALCFSP---NRYWLCAATEQSIKIWD  237 (303)
Q Consensus       172 i~~-~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~s~---~~~~l~~~~~~~i~iwd  237 (303)
                      ... ..-+|  .+..++.++.++.+...|..+++.+.......+        ...+.-+|   ++.+++.+.++.++.+|
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence            000 00112  133566677899999999999887665432110        11111122   56666777889999999


Q ss_pred             CCCCceeee
Q 048118          238 LESKSIVED  246 (303)
Q Consensus       238 ~~~~~~~~~  246 (303)
                      .++++.+.+
T Consensus       273 ~~tG~~~W~  281 (394)
T PRK11138        273 LRSGQIVWK  281 (394)
T ss_pred             CCCCCEEEe
Confidence            999987654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.66  E-value=0.02  Score=46.03  Aligned_cols=200  Identities=14%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +.+-.+.+..++++|+...+++.....+.|--.+..  .+    ..+          .+.+.      + -+..-.|++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~----vlr----------~i~l~------g-~~D~EgI~y~   73 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GK----VLR----------RIPLD------G-FGDYEGITYL   73 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------EEE----------EEE-S------S--SSEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CC----EEE----------EEeCC------C-CCCceeEEEE
Confidence            444455689999999877777777777776555432  11    111          11111      1 2355678888


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCce---------eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGEC---------KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---  158 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~---  158 (303)
                      .++.++++.-.++.+.+++.....         .........++..+..++|+|..  ..++.+....-..+|.+..   
T Consensus        74 g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~~  151 (248)
T PF06977_consen   74 GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFPG  151 (248)
T ss_dssp             STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT-
T ss_pred             CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEccccC
Confidence            888777776668888888762211         11111122355668899999975  3455566666666665532   


Q ss_pred             -ceeE-EEE------cCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecCC----------CeEEEEEEc
Q 048118          159 -CKLR-ATL------AGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDAG----------AVIHALCFS  219 (303)
Q Consensus       159 -~~~~-~~~------~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s  219 (303)
                       .... ...      ......+.++.++|.. ++++.+..++.+..+| .+|+.+..+...          ...-.++|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence             1111 111      1123457889999954 5667777889999999 566665554321          246678999


Q ss_pred             CCCeEEEEEcCCcEEEE
Q 048118          220 PNRYWLCAATEQSIKIW  236 (303)
Q Consensus       220 ~~~~~l~~~~~~~i~iw  236 (303)
                      ++|.+..++.-+..++|
T Consensus       231 ~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  231 PDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             TT--EEEEETTTEEEEE
T ss_pred             CCCCEEEEcCCceEEEe
Confidence            99988888876665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.0083  Score=52.40  Aligned_cols=155  Identities=22%  Similarity=0.232  Sum_probs=87.5

Q ss_pred             CEEEEEEeeCCCEEEEEe--CC--CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE--EEEC
Q 048118           83 DVLSVAFSIDNRQIVSAS--RD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK--VWNL  156 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~--~d--~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~--iwd~  156 (303)
                      .+..-+|+|++..++...  ..  ..+.++++.......+.....+   -..-+|+|++ ..++++...||...  ++|+
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG-~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDG-SKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCC-CEEEEEECCCCCccEEEEcC
Confidence            344556777776544332  11  2366666654333333222222   2345689987 34677777888755  4577


Q ss_pred             CCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceE-EEecCCCeEEEEEEcCCCeEEEEEc--C
Q 048118          157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRL-YSLDAGAVIHALCFSPNRYWLCAAT--E  230 (303)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~--~  230 (303)
                      .+....+ +....+.-+.-.|+|+|+.++-.+. .|  .|.+.|+..++.- .+....... .-.|+|+|.+++...  +
T Consensus       270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccC
Confidence            6655333 4443444456789999998876654 55  4555565554431 222222222 556899998776654  4


Q ss_pred             Cc--EEEEeCCCCce
Q 048118          231 QS--IKIWDLESKSI  243 (303)
Q Consensus       231 ~~--i~iwd~~~~~~  243 (303)
                      |.  |.+.|+.++..
T Consensus       348 g~~~i~~~~~~~~~~  362 (425)
T COG0823         348 GQWDIDKNDLASGGK  362 (425)
T ss_pred             CceeeEEeccCCCCc
Confidence            55  66777766553

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00024  Score=59.00  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             EEEEECCCceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEE-EE
Q 048118          151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWL-CA  227 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l-~~  227 (303)
                      +++.+..+.+...-+..+...|.+++|+|..+ ++..++.+.+|+|.|+++...+.++.....+.+++|.-+. .++ ++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            55555444444444556677899999999776 7888999999999999999888888888899999998775 444 44


Q ss_pred             EcCCcEEEEeCCCC
Q 048118          228 ATEQSIKIWDLESK  241 (303)
Q Consensus       228 ~~~~~i~iwd~~~~  241 (303)
                      -..|.|.+||++..
T Consensus       255 l~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQP  268 (463)
T ss_pred             ccCceEEEEEccCC
Confidence            46899999999754

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00084  Score=59.79  Aligned_cols=113  Identities=20%  Similarity=0.290  Sum_probs=77.3

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecc
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      =+++..+++++.|+.-|.+++++...++....-.  ....+..++.|++..++|+++ .|.|.++-+..+..-....+..
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            3455678899999999999999987776543222  234556677888887776665 5678887765522111111100


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                    .-+.|...|+++.|+++++.|.+|..-|.|.+-.++
T Consensus       119 --------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  119 --------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             --------------ccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence                          001256778999999999999999999999876553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0013  Score=60.08  Aligned_cols=150  Identities=13%  Similarity=0.141  Sum_probs=82.8

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      +++++|+|.. -.|+.|=..|.+.+|.....+..      ..                 ...|..+|..+.|+++|..++
T Consensus        62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~h------tv-----------------~~th~a~i~~l~wS~~G~~l~  117 (1416)
T KOG3617|consen   62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETH------TV-----------------VETHPAPIQGLDWSHDGTVLM  117 (1416)
T ss_pred             hhhhccChHH-HHHhhccccceeEEEecCCceee------ee-----------------ccCCCCCceeEEecCCCCeEE
Confidence            3467888763 35666666778888865432211      00                 124888999999999999999


Q ss_pred             EEeCCCcEEEEecCCceeeeeec--CCCCccc--eEEEEEcCCCCC----CEEEEEeCCCcEE-EEECCCceeEEEEcCC
Q 048118           98 SASRDRTIKLWNTLGECKYTIQE--GDAHTEW--VSCVRFSPNTLQ----PTIVSASWDRTVK-VWNLSNCKLRATLAGH  168 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~--i~~~~~~~~~~~----~~~~~~~~dg~i~-iwd~~~~~~~~~~~~~  168 (303)
                      |+.+-|.|.+|...-....+...  ...-...  ..|...+++...    ...+..+.+..+- .++   .+...  .. 
T Consensus       118 t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fn---wk~~~--a~-  191 (1416)
T KOG3617|consen  118 TLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFN---WKESL--AE-  191 (1416)
T ss_pred             EcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhccccc---Cccch--hh-
Confidence            99999999999764111111100  0001122  334455555321    1223333333332 221   11110  00 


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCC
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLA  199 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~  199 (303)
                       .... -.-.|+|..|..++.+|+|+..|-.
T Consensus       192 -rs~~-ksgv~~g~~F~~~~~~GtVyyvdq~  220 (1416)
T KOG3617|consen  192 -RSDE-KSGVPKGTEFLFAGKSGTVYYVDQN  220 (1416)
T ss_pred             -cccc-ccCCCCCcEEEEEcCCceEEEEcCC
Confidence             0000 0124788888899999999988854

>smart00320 WD40 WD40 repeats

Probab=97.51  E-value=0.00024  Score=38.16  Aligned_cols=33  Identities=58%  Similarity=0.804  Sum_probs=29.5

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN  109 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~  109 (303)
                      +..|...|.+++|++.+..+++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            346778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.43  E-value=0.00031  Score=64.21  Aligned_cols=120  Identities=23%  Similarity=0.349  Sum_probs=87.6

Q ss_pred             CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC-C-eEEEEeCC
Q 048118          122 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD-G-VILLWDLA  199 (303)
Q Consensus       122 ~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-~v~iwd~~  199 (303)
                      ..++...+|++|+-..  ..++.|+..|.|++|+..++.......+|...|+-+.=+-+|..+++.+.. . -..+|++.
T Consensus      1098 rd~~~~fTc~afs~~~--~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT--NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hccccceeeEEeecCC--ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            3456778999998764  578999999999999999999888899999999999888888876655443 2 46689985


Q ss_pred             C-CceEEEecCCCeEEEEEEcCCCeE-EEEEcCCcEEEEeCCCCceeee
Q 048118          200 E-GKRLYSLDAGAVIHALCFSPNRYW-LCAATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       200 ~-~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~  246 (303)
                      + +.+.+++..   -.++.|+..-+. +.++......+||++++..+..
T Consensus      1176 s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1176 STGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             cccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            3 444455443   345667765332 2333446789999998876554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.33  E-value=0.0063  Score=53.14  Aligned_cols=114  Identities=25%  Similarity=0.308  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCCCEEEEEeCC--CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCe--EEEEeCCCCc
Q 048118          128 VSCVRFSPNTLQPTIVSASWD--RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGV--ILLWDLAEGK  202 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~--v~iwd~~~~~  202 (303)
                      +..-+|+|++.....++-...  ..+.++|+++++...... ..+.-...+|+|+|+.|+.+ ..||.  |.+.|+..++
T Consensus       195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~  273 (425)
T COG0823         195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN  273 (425)
T ss_pred             eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence            344567776532212222222  358888988776443332 22334456899999987654 45665  4556777666


Q ss_pred             eEEEecC-CCeEEEEEEcCCCeEEEEEcCC----cEEEEeCCCCce
Q 048118          203 RLYSLDA-GAVIHALCFSPNRYWLCAATEQ----SIKIWDLESKSI  243 (303)
Q Consensus       203 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~----~i~iwd~~~~~~  243 (303)
                      ... +.. ...-..-.|+|+|..++..+|.    .|+++|.+.+..
T Consensus       274 ~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         274 LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            332 322 2222256789999877766542    588888877654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.0043  Score=55.50  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=81.2

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ..|.--+++..+++++-|+.-|.+.+|+-.+....... .......+..+..+++.  .+++.|+..|.|.++.++....
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-NEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhccc-ccCccceEEEEEecchh--HhhhhhcCCceEEeehhhccCC
Confidence            34555567778899999999999999986443222111 11223334555667653  4577788888999998765332


Q ss_pred             EE-----E-EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 048118          162 RA-----T-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE  200 (303)
Q Consensus       162 ~~-----~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  200 (303)
                      ..     . -+.|...|++++|++++..+.+|...|+|..-.+..
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            11     1 133678999999999999999999999999887766

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0017  Score=57.29  Aligned_cols=76  Identities=21%  Similarity=0.438  Sum_probs=63.6

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEE-EEEEcCCCeEEEEE-cCCcEEEEeCCCCceeee
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIH-ALCFSPNRYWLCAA-TEQSIKIWDLESKSIVED  246 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~-~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~  246 (303)
                      ..+.-+.|+|.-.++|.+..+|.+-+..+. -+.+.+++ .+..+. +++|.|||.++|++ .||+|++.|++++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            356778999998999999999999988877 78888887 455555 99999999988876 699999999998876654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.13  E-value=0.028  Score=52.51  Aligned_cols=137  Identities=12%  Similarity=0.133  Sum_probs=90.4

Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCC-eeEEEECC-----CCCEEEEEeCCCeEEEEeCCCC-ceEE-----EecC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGY-VNTVAVSP-----DGSLCASGGKDGVILLWDLAEG-KRLY-----SLDA  209 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~d~~v~iwd~~~~-~~~~-----~~~~  209 (303)
                      +........++-.|+..++.+.++.-+... |..++=..     .......|-.+..+..||.|-. ..+.     .+..
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            444455678999999999999998877643 55443210     1234456777889999999843 3222     2233


Q ss_pred             CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          210 GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      .....+++-+.+|.+++++.+|.|++||- .++.                   ....+.+-+..+..++.+.||++|+..
T Consensus       577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~-------------------AKT~lp~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  577 KNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKR-------------------AKTALPGLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             CCCceEEEecCCceEEEEeCCCcEEeecc-cchh-------------------hhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence            45677888888999999999999999993 2211                   011223334557789999999998877


Q ss_pred             ecCCeEEEEe
Q 048118          290 YTDGVIRVWG  299 (303)
Q Consensus       290 s~Dg~v~~w~  299 (303)
                      +.. .+.+++
T Consensus       637 c~t-yLlLi~  645 (794)
T PF08553_consen  637 CKT-YLLLID  645 (794)
T ss_pred             ecc-eEEEEE
Confidence            643 444444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.97  E-value=0.0015  Score=56.01  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=64.6

Q ss_pred             CCCCCEEEEE---------eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118          178 SPDGSLCASG---------GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       178 ~~~~~~l~~~---------~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      |||+++++..         +..+.+.++|+.+++..........+....|||+|..++...++.|++++..+++.. .+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~-~lT   79 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET-QLT   79 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE-ESE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeE-Eec
Confidence            5677766553         224578899998865433222245677889999999999999999999998777332 222


Q ss_pred             eccccccccccC-ccceee-ccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEec
Q 048118          249 VDLKTEAEKSEA-TTATTT-IKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGI  300 (303)
Q Consensus       249 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~  300 (303)
                      .+-......... ....-+ +..    -..+.||||+++||.. -.+..|+.+.+
T Consensus        80 ~dg~~~i~nG~~dwvyeEEv~~~----~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   80 TDGEPGIYNGVPDWVYEEEVFDR----RSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             S--TTTEEESB--HHHHHHTSSS----SBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             cccceeEEcCccceecccccccc----ccceEECCCCCEEEEEEECCcCCceEEe
Confidence            211000000000 000000 111    1347899999988854 45566666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.95  E-value=0.22  Score=43.20  Aligned_cols=210  Identities=15%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ++...+.|+++..+  +-+++|.|..+|.+.|-|+....-.+.   ..+..+            ..-......|+++.|.
T Consensus        82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~---~~i~~~------------~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYN---ENIRES------------FLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEE---EEGGG--------------T-SS----EEEEEEE
T ss_pred             eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEee---cccccc------------ccccccccCeeEEEEE
Confidence            34446899999986  467999999999999999842211110   111110            0001122345566665


Q ss_pred             -----eCC---CEEEEEeCCCcEEEEecC--Cceeeeee---cCCCCccceEEEE-EcCCC------------------C
Q 048118           91 -----IDN---RQIVSASRDRTIKLWNTL--GECKYTIQ---EGDAHTEWVSCVR-FSPNT------------------L  138 (303)
Q Consensus        91 -----~~~---~~l~t~~~d~~i~vw~~~--~~~~~~~~---~~~~~~~~i~~~~-~~~~~------------------~  138 (303)
                           .|+   -.++.|...|.+.+|.+.  ....+...   ....+...|..+. ++.+.                  .
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence                 222   257788888999999753  11122111   1112233333332 32211                  0


Q ss_pred             CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEEC-----CCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--
Q 048118          139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS-----PDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--  211 (303)
Q Consensus       139 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--  211 (303)
                      .+-++....+..+|++..-+.+...+.....-.+..+.+-     ..+..|++-..+|.++++.+..-+.+.......  
T Consensus       225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~  304 (395)
T PF08596_consen  225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL  304 (395)
T ss_dssp             --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred             cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence            1124555668899999987766554443221222333342     245567777899999999999888776654322  


Q ss_pred             ---eEEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118          212 ---VIHALCFSPNRYWLCAATEQSIKIWD  237 (303)
Q Consensus       212 ---~v~~~~~s~~~~~l~~~~~~~i~iwd  237 (303)
                         .+...+++++|.++.-.+...+.++.
T Consensus       305 d~~~~~~ssis~~Gdi~~~~gpsE~~l~s  333 (395)
T PF08596_consen  305 DSRRLSSSSISRNGDIFYWTGPSEIQLFS  333 (395)
T ss_dssp             -HHHHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred             ccccccccEECCCCCEEEEeCcccEEEEE
Confidence               23345677888877666655554444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.90  E-value=0.0041  Score=35.69  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=30.4

Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL  204 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  204 (303)
                      ...|..++|+|...+||.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            357899999999999999999999999998 55544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.90  E-value=0.2  Score=42.28  Aligned_cols=130  Identities=20%  Similarity=0.295  Sum_probs=76.3

Q ss_pred             CcEEEEECCCc-----eeEEE-EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eEEE--ecCCCeEEEEEEc
Q 048118          149 RTVKVWNLSNC-----KLRAT-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYS--LDAGAVIHALCFS  219 (303)
Q Consensus       149 g~i~iwd~~~~-----~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~--~~~~~~v~~~~~s  219 (303)
                      |.|.++++...     ++... -....++|++++-- .+. |+++. .+.|.+|++...+ ....  +.....+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999998773     22211 12236788888755 344 44443 5799999998776 3322  2344566666554


Q ss_pred             CCCeEEEEEcCCcEEEEeCCC--CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          220 PNRYWLCAATEQSIKIWDLES--KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       220 ~~~~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      .+ .++++.....+.++.++.  .++. .+.-                  .....+++++.|-+++..++.+..+|.+.+
T Consensus       139 ~~-~I~vgD~~~sv~~~~~~~~~~~l~-~va~------------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~  198 (321)
T PF03178_consen  139 KN-YILVGDAMKSVSLLRYDEENNKLI-LVAR------------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFV  198 (321)
T ss_dssp             TT-EEEEEESSSSEEEEEEETTTE-EE-EEEE------------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred             cc-EEEEEEcccCEEEEEEEccCCEEE-EEEe------------------cCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence            33 445555567777775432  2222 1111                  112345677888766679999999999999


Q ss_pred             Eecc
Q 048118          298 WGIG  301 (303)
Q Consensus       298 w~~~  301 (303)
                      +...
T Consensus       199 l~~~  202 (321)
T PF03178_consen  199 LRYN  202 (321)
T ss_dssp             EEE-
T ss_pred             EEEC
Confidence            8764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.29  Score=42.45  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=98.1

Q ss_pred             EEEEEeeCCCE-EEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCce
Q 048118           85 LSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNCK  160 (303)
Q Consensus        85 ~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~~  160 (303)
                      ..+++++.+.. .++...++.|.+.|........ ....    .....+.++|++.. ..++-.  .++.+.+.|-.+++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG----~~P~~~~~~~~~~~-vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG----LGPVGLAVDPDGKY-VYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec----cCCceEEECCCCCE-EEEEecccCCceEEEEeCCCCe
Confidence            45777887774 4455556889998854322211 1111    13456888887643 333333  47889999988887


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEE-----EecCCCeEEEEEEcCCCeEEEEEc--C--
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLY-----SLDAGAVIHALCFSPNRYWLCAAT--E--  230 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~--~--  230 (303)
                      ...+......+ ..++++|+|+.+.++ ..++++.+.|........     .......-..+.++|++..+.+..  .  
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            77665443344 889999999966555 478999999976554442     122334445678899987554433  2  


Q ss_pred             CcEEEEeCCCCceee
Q 048118          231 QSIKIWDLESKSIVE  245 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~  245 (303)
                      +.+...|..++....
T Consensus       231 ~~v~~id~~~~~v~~  245 (381)
T COG3391         231 NNVLKIDTATGNVTA  245 (381)
T ss_pred             ceEEEEeCCCceEEE
Confidence            478888887766544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.71  E-value=0.24  Score=40.69  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=60.7

Q ss_pred             CEEEEEeCCCcEEEEECCC-ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE-------------
Q 048118          140 PTIVSASWDRTVKVWNLSN-CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY-------------  205 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-------------  205 (303)
                      ..++.|+.+| +.+++... .......  +...|..+...|+-+.|++-+ |+++.++++..-....             
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            4688888888 89998832 2222222  233499999988777665554 5999999986543322             


Q ss_pred             --EecCCCeEEEEE---EcCCCeEEEEEcCCcEEEEeCCC
Q 048118          206 --SLDAGAVIHALC---FSPNRYWLCAATEQSIKIWDLES  240 (303)
Q Consensus       206 --~~~~~~~v~~~~---~s~~~~~l~~~~~~~i~iwd~~~  240 (303)
                        .+.....+..++   -......++++...+|.+|.+..
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~  123 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND  123 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence              111222344433   12234677777778999988765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.62  E-value=0.17  Score=42.36  Aligned_cols=99  Identities=21%  Similarity=0.364  Sum_probs=68.0

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCCC-------
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAGA-------  211 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~-------  211 (303)
                      +.+.++|..+++.+..+..  +..-.+.++|+++.+.+++          +.-.|.+||..+-+....+....       
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4688999988888776654  3445577899999887642          23478899999887766553221       


Q ss_pred             -eEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118          212 -VIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       212 -~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~  249 (303)
                       ..+.++++.++.++.+..   ..+|.+-|+..++++.++.+
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~  136 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT  136 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence             122367788887766543   56899999999998877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.61  E-value=0.0084  Score=34.42  Aligned_cols=29  Identities=17%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             eEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          273 YCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       273 ~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+..++|+|...+||.|+.||.|.+|.++
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            35679999999999999999999999873

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.50  E-value=0.48  Score=41.01  Aligned_cols=202  Identities=16%  Similarity=0.216  Sum_probs=86.7

Q ss_pred             CCEEEEEe-CCCcEEEEecCCceee-----eeecCCCC-------ccceEEEEEcCCCCCCEEEEE--eC----CCcEEE
Q 048118           93 NRQIVSAS-RDRTIKLWNTLGECKY-----TIQEGDAH-------TEWVSCVRFSPNTLQPTIVSA--SW----DRTVKV  153 (303)
Q Consensus        93 ~~~l~t~~-~d~~i~vw~~~~~~~~-----~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~--~~----dg~i~i  153 (303)
                      .++|+..+ ..+.|.+.|+..++..     .+...+..       ...+.|+   |++  ..++++  ..    -|-+.+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl---p~G--~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL---PDG--RIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE----SS----EEEEEEEETTS-S--EEEE
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec---CCc--cEEEEeccCCCCCCCCcEEE
Confidence            45666555 6778999997533221     11110000       1112333   443  245543  22    245778


Q ss_pred             EECCCceeEEEEcCC---CCCeeEEEECCCCCEEEEEeC--------------------CCeEEEEeCCCCceEEEecCC
Q 048118          154 WNLSNCKLRATLAGH---TGYVNTVAVSPDGSLCASGGK--------------------DGVILLWDLAEGKRLYSLDAG  210 (303)
Q Consensus       154 wd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------d~~v~iwd~~~~~~~~~~~~~  210 (303)
                      .|-++.+........   ...-..+.+.|..+.++|+.-                    -.++.+||+.+++.+++++.+
T Consensus       162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            888777766655432   233467888888888877632                    358999999999999998765


Q ss_pred             C---eEEEEEEc--CCCe--EEEEEcCCcEEEEeC-CCCc--eeeeeeeccccccccccCcc--ceeeccccceeEEEEE
Q 048118          211 A---VIHALCFS--PNRY--WLCAATEQSIKIWDL-ESKS--IVEDLKVDLKTEAEKSEATT--ATTTIKKKNIYCTSLN  278 (303)
Q Consensus       211 ~---~v~~~~~s--~~~~--~l~~~~~~~i~iwd~-~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  278 (303)
                      .   ..-.+.|.  |+..  ++.++-..+|..|-- +.++  ..+.+.+....   ......  ....+......+++|.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~---v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK---VEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-----SS---GGGGGG-EE------EE
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc---cCcccccccccccccCCCceEeEE
Confidence            2   34455554  4432  333333556665543 3322  11112221110   000000  0011222234578899


Q ss_pred             EcCCCCEEE-EeecCCeEEEEeccc
Q 048118          279 WSVDGSTLF-SGYTDGVIRVWGIGR  302 (303)
Q Consensus       279 ~sp~~~~l~-~gs~Dg~v~~w~~~~  302 (303)
                      .|.|.++|. ++=-+|.||.|||+.
T Consensus       319 iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             E-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             EccCCCEEEEEcccCCcEEEEecCC
Confidence            999999776 455699999999963

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.48  E-value=0.54  Score=41.24  Aligned_cols=159  Identities=18%  Similarity=0.251  Sum_probs=80.1

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceE-----EEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS-----CVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.|.++.|..+ +.|+....||.+++++..++..+.+.. ......|.     ...+..++    ++.-..++.+.+..-
T Consensus        81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~-~i~~~~v~e~~i~~~~~~~~G----ivvLt~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGE-EIEEEKVLECRIFAIWFYKNG----IVVLTGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhh-hccccCcccccccccccCCCC----EEEECCCCeEEEEeC
Confidence            68899999885 455567799999999987654111111 11111222     22222222    333344444444322


Q ss_pred             CCceeE-EEE---cC-----CC-CCeeE-EEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE
Q 048118          157 SNCKLR-ATL---AG-----HT-GYVNT-VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL  225 (303)
Q Consensus       157 ~~~~~~-~~~---~~-----~~-~~i~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (303)
                      ...... ..+   ..     +. ..... ..++.+....+....++.+.+.+-...+   .+....++..++.||++.++
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---QIDSDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---cccCCCCeEEEEECCCCCEE
Confidence            111111 111   00     00 01111 2233344444444455555544432211   13334679999999999887


Q ss_pred             EEEc-CCcEEEEeCCCCceeeeeee
Q 048118          226 CAAT-EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       226 ~~~~-~~~i~iwd~~~~~~~~~~~~  249 (303)
                      |.-+ +|.+.+....-.+.+.++..
T Consensus       232 Al~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  232 ALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             EEEECCCCEEEEECcccceeEEeec
Confidence            7654 68888887665555544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.45  E-value=0.001  Score=58.79  Aligned_cols=164  Identities=15%  Similarity=0.266  Sum_probs=96.8

Q ss_pred             ccccceeeeecCCCCCcEEEEe----cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           13 AHTDMVTAIATPIDNSDMIVTA----SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~----s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      +|....++++|++-+.+.||.|    -+|..+.|||+...-.   ++.          ....++. +    -.....+++
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---vPk----------e~~~fs~-~----~l~gqns~c  161 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---VPK----------ESPLFSS-S----TLDGQNSVC  161 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccC---CCc----------ccccccc-c----cccCccccc
Confidence            4445677889987655667776    3567899999975310   000          0001111 1    123344788


Q ss_pred             EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE-CCCce-eEEEEc
Q 048118           89 FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN-LSNCK-LRATLA  166 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd-~~~~~-~~~~~~  166 (303)
                      |..+.+++++|...+.+.++|+...+...   ....+..+..+...|-. ..+++ ...||.|-+|| .++-+ +...+.
T Consensus       162 wlrd~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG~tVdp~~-~nY~c-s~~dg~iAiwD~~rnienpl~~i~  236 (783)
T KOG1008|consen  162 WLRDTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQGITVDPFS-PNYFC-SNSDGDIAIWDTYRNIENPLQIIL  236 (783)
T ss_pred             cccCcchhhcccccchhhhhhhhhhhhhh---hhhhhhhcccceecCCC-CCcee-ccccCceeeccchhhhccHHHHHh
Confidence            99888899999999999999975221110   01122235556666632 23554 45599999999 43322 222222


Q ss_pred             CCC----CCeeEEEECCCCC-EEEEEe-CCCeEEEEeCC
Q 048118          167 GHT----GYVNTVAVSPDGS-LCASGG-KDGVILLWDLA  199 (303)
Q Consensus       167 ~~~----~~i~~~~~~~~~~-~l~~~~-~d~~v~iwd~~  199 (303)
                      ...    ..+..++|.|... .+++.+ ..++|+.+|+.
T Consensus       237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            222    2488999999543 455555 46799999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.44  E-value=0.56  Score=41.10  Aligned_cols=51  Identities=18%  Similarity=0.276  Sum_probs=37.4

Q ss_pred             cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118          104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus       104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .|++|+..+.....+....   +.+.++.|..+   ..++....||.+++||+....
T Consensus        62 ~I~iys~sG~ll~~i~w~~---~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS---GRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCCCCEeEEEEECC---CCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce
Confidence            4889988776655544322   56888999875   357778899999999986544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.37  E-value=0.36  Score=44.34  Aligned_cols=103  Identities=13%  Similarity=-0.002  Sum_probs=58.8

Q ss_pred             ceEEEEEcCCCCCCEEEEEe-----CCC--cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC---------
Q 048118          127 WVSCVRFSPNTLQPTIVSAS-----WDR--TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD---------  190 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------  190 (303)
                      .+...+.+|++.. ..+...     .|.  .|.+++.. +.......+  ...+.-.|+|+|+.+.+.+..         
T Consensus       351 ~vsspaiSpdG~~-vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        351 NITSAALSRSGRQ-VAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             CcccceECCCCCE-EEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4667888998743 222221     233  45555642 222222232  237788999998877766532         


Q ss_pred             ---CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118          191 ---GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKI  235 (303)
Q Consensus       191 ---~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i  235 (303)
                         +.+.+.++..++.-.  .....|..+.|||||..++...+++|++
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~V  472 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYL  472 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEE
Confidence               222222333222211  2245699999999998887766787776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.36  E-value=0.022  Score=44.30  Aligned_cols=105  Identities=13%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC-CCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-C
Q 048118           93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT-LQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-G  170 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~  170 (303)
                      +.-++.|+.++.|.+|....... ...........|-+.  -|.. ...+..+++++|.||-|.....+.......|+ .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccch-HHHhhhcccccceec--cccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence            45688899999999997642110 000000011122221  1222 12367889999999999998887776666676 5


Q ss_pred             CeeEEEECCCCCEEEEE--eCCCeEEEEeCCC
Q 048118          171 YVNTVAVSPDGSLCASG--GKDGVILLWDLAE  200 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~  200 (303)
                      ++.....+..++.++.+  |.|..++.|++..
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            55555555556666666  6677777777653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.36  E-value=0.034  Score=44.01  Aligned_cols=63  Identities=14%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---------------cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSL---------------DAGAVIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                      +..++.+|++-+.+|.+++||+.+++.+..-               .....|..+.++.+|..++.-++|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3456788999999999999999988754432               12356788888988988888888999999865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.31  E-value=0.22  Score=39.75  Aligned_cols=102  Identities=15%  Similarity=0.265  Sum_probs=71.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCc
Q 048118          182 SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEAT  261 (303)
Q Consensus       182 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (303)
                      .++..|+..+.+.-.|..+|+.++.-..+.++.+-+.--..+.+.++..|.+++.+.++++.+.+...-        +. 
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------~~-   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------ET-   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh--------hh-
Confidence            467788889999999999998877665555555433333556677788999999999999776554321        00 


Q ss_pred             cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecccC
Q 048118          262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY  303 (303)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~~  303 (303)
                           .     .+ ...-.+++..+..|+.|+..+.-|.-+|
T Consensus        95 -----v-----k~-~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   95 -----V-----KV-RAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             -----h-----cc-ceEEcCCCceEEEecCCCcEEEeccccc
Confidence                 0     00 1123578899999999999988877554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.27  E-value=0.47  Score=38.32  Aligned_cols=202  Identities=11%  Similarity=0.115  Sum_probs=100.3

Q ss_pred             ccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           80 HTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        80 h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      -...+-.++|+|+.. ++++....+.|.-.+..+.....+....  ......+.+--++  .++++--.++.+.++++..
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g--~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG--FGDYEGITYLGNG--RYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS---SSEEEEEE-STT--EEEEEETTTTEEEEEEE--
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC--CCCceeEEEECCC--EEEEEEcCCCcEEEEEEec
Confidence            345688999999755 6666666777766676554333332211  1224556665443  3444444588888888732


Q ss_pred             ce----e--EEEE----c-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC---CceEEEe-----c----CCCeEEE
Q 048118          159 CK----L--RATL----A-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE---GKRLYSL-----D----AGAVIHA  215 (303)
Q Consensus       159 ~~----~--~~~~----~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~-----~----~~~~v~~  215 (303)
                      ..    .  ...+    . .++..+-.++|+|.++.|+++-+..-..++.+..   ...+...     .    .-..+.+
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence            11    1  1112    1 2445688999999888777777776666666643   2222111     1    1234678


Q ss_pred             EEEcCC-CeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          216 LCFSPN-RYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       216 ~~~s~~-~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      ++++|. +.+++.+ ....|..+| ..++.+..+.........           ...-...-.++|.++|.+.+++ +-+
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-----------~~~~~QpEGIa~d~~G~LYIvs-EpN  242 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-----------SKDIPQPEGIAFDPDGNLYIVS-EPN  242 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG------------SS---SEEEEEE-TT--EEEEE-TTT
T ss_pred             eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-----------ccccCCccEEEECCCCCEEEEc-CCc
Confidence            889987 4555555 466788899 567777666554321110           0111123458899998655554 455


Q ss_pred             eEEEE
Q 048118          294 VIRVW  298 (303)
Q Consensus       294 ~v~~w  298 (303)
                      ...+|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            55444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.22  E-value=0.87  Score=41.01  Aligned_cols=154  Identities=11%  Similarity=0.136  Sum_probs=84.2

Q ss_pred             CEEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe---------CCCcEEEEECCCceeEE
Q 048118           94 RQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS---------WDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~dg~i~iwd~~~~~~~~  163 (303)
                      ..++.++.++.|.-+|..+ +..+...... +...-..+.-+|.-....++.++         .++.+..+|..+++.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~-~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNND-QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCC-CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            5666777888888888743 3333322111 10000011111211112344443         36788999999888766


Q ss_pred             EEcCCCC--------------------Ce-eEEEECCCCCEEEEEeCCC------------------eEEEEeCCCCceE
Q 048118          164 TLAGHTG--------------------YV-NTVAVSPDGSLCASGGKDG------------------VILLWDLAEGKRL  204 (303)
Q Consensus       164 ~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~d~------------------~v~iwd~~~~~~~  204 (303)
                      .+.....                    .+ ...++.+.+..++.++.++                  .+.-.|..+++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            5543111                    01 1234555566777776554                  7999999999988


Q ss_pred             EEecCCC-eE------EEEEEc----CCC----eEEEEEcCCcEEEEeCCCCceeeeee
Q 048118          205 YSLDAGA-VI------HALCFS----PNR----YWLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       205 ~~~~~~~-~v------~~~~~s----~~~----~~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      ...+... ..      ....+.    -++    .+++.+.+|.++..|.++++.+.+..
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            8764221 00      000111    122    24445568999999999999886654

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.05  E-value=0.8  Score=40.45  Aligned_cols=131  Identities=13%  Similarity=0.182  Sum_probs=85.0

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCC-------EEEEEeCCCeEEEEeCCC-Cc-eEE-----E
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-------LCASGGKDGVILLWDLAE-GK-RLY-----S  206 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~v~iwd~~~-~~-~~~-----~  206 (303)
                      .+.++.....++-.|+..++.+.++.-+.. |+-+.+.|+.+       .-+.|-.|..|.-||.+- +. .+.     .
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455666667788889999999888876655 77777777642       123466788888899873 22 221     1


Q ss_pred             ecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118          207 LDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL  286 (303)
Q Consensus       207 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  286 (303)
                      +.......|.+-..+|.+++++.+|.|++||- .+..-+                   ..+++-+..+..+..+.+|++|
T Consensus       427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-------------------TAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-------------------TALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-------------------hcccccCCceeeEEeeccCcEE
Confidence            22334566666677899999999999999995 221111                   1122233345667777888887


Q ss_pred             EEeecC
Q 048118          287 FSGYTD  292 (303)
Q Consensus       287 ~~gs~D  292 (303)
                      +..+..
T Consensus       487 l~Tc~t  492 (644)
T KOG2395|consen  487 LATCKT  492 (644)
T ss_pred             EEeccc
Confidence            766543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.01  E-value=0.099  Score=48.97  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeee---cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQ---EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      +....|-.++.+..||.+-.....+.   ..-.......|++-..++   .++.|+.+|.||+||--.......+.+-..
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~  619 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGD  619 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCC
Confidence            34566778888999997532211111   111223456777776654   799999999999999544334445666678


Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                      +|..|..+.||++++..+ +..+.+++.
T Consensus       620 pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  620 PIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             CeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            999999999999886555 456666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.00  E-value=0.02  Score=44.48  Aligned_cols=66  Identities=20%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             CEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeE-EEECCCCCEEEEEeCCCeEEEEeCCCCceEE
Q 048118          140 PTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNT-VAVSPDGSLCASGGKDGVILLWDLAEGKRLY  205 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  205 (303)
                      ..+++|+.+|.|.+|..... .....+......|.+ +.--.++.+..+++.||.|+.|++...+.+.
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g  138 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG  138 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence            36889999999999977521 111111111222222 2222234467888999999999998776553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.95  E-value=0.74  Score=37.79  Aligned_cols=145  Identities=16%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE------
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT------  164 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~------  164 (303)
                      ..+..|+.|..+| +.+++..........   .+...|..+..-|+-  ..++.- .|+.+.++++..-.....      
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i---~~~~~I~ql~vl~~~--~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI---LKLSSITQLSVLPEL--NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE---eecceEEEEEEeccc--CEEEEE-cCCccEEEEchhhccccccccccc
Confidence            4567888898888 888877211111111   112237777777753  334433 459999999865332220      


Q ss_pred             --------EcCCCCCeeEEE--ECCCCCEEEEEeCCCeEEEEeCCCC-----ceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118          165 --------LAGHTGYVNTVA--VSPDGSLCASGGKDGVILLWDLAEG-----KRLYSLDAGAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       165 --------~~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (303)
                              .......+..++  -.+.+...+.....++|.+|.....     +....+.....+.+++|.  +..++.+.
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence                    011123444444  1223333334444568888877542     455666667888899998  44566666


Q ss_pred             CCcEEEEeCCCCcee
Q 048118          230 EQSIKIWDLESKSIV  244 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~  244 (303)
                      .....+.|+.++...
T Consensus       156 ~~~f~~idl~~~~~~  170 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPS  170 (275)
T ss_pred             CCceEEEecCCCCce
Confidence            777888888866543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.94  E-value=0.55  Score=42.28  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCC------Ce--eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCe
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTG------YV--NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV  212 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i--~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  212 (303)
                      .+..++.++.+.-.|..+++.+..+.....      .+  ..+.+. ++..++.++.++.|.-+|.++++.+........
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~  141 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ  141 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence            566677889999999988877655543221      01  011111 225777788899999999999999888765432


Q ss_pred             ------EE-EEEEcCCCeEEEEE---------cCCcEEEEeCCCCceeeeeee
Q 048118          213 ------IH-ALCFSPNRYWLCAA---------TEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       213 ------v~-~~~~s~~~~~l~~~---------~~~~i~iwd~~~~~~~~~~~~  249 (303)
                            +. +..+. ++.+++.+         .++.++.+|.++++.+-....
T Consensus       142 ~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         142 VPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             cCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence                  11 11222 24444433         257899999999998776554

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=0.045  Score=51.71  Aligned_cols=103  Identities=19%  Similarity=0.306  Sum_probs=72.1

Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      ..+..++.|+..|.+...|..+.... ....+....+|.+++|+.++  ..++.|-.+|.|.+||...++..+.+..|..
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            34556788888888888887554222 33334456789999999986  4677788899999999999888888877766


Q ss_pred             CeeEEE---ECCCCCEEEEEeCCCeEEEEeC
Q 048118          171 YVNTVA---VSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       171 ~i~~~~---~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                      +.+++-   +..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            655543   3344446777766665  4554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.78  E-value=0.97  Score=37.82  Aligned_cols=100  Identities=15%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCC--Cc---e--EEEec-CCCeEEEEEEc
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAE--GK---R--LYSLD-AGAVIHALCFS  219 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~--~~---~--~~~~~-~~~~v~~~~~s  219 (303)
                      |.++.+|. .+.....+..+-..-+.++||||++.|..+- ..+.|.-+++..  +.   .  ...+. .....-.++..
T Consensus       143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD  221 (307)
T COG3386         143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD  221 (307)
T ss_pred             ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence            33444443 3444444444444567899999998776654 457888887652  11   1  11111 11222234445


Q ss_pred             CCCeEE-EEEcCC-cEEEEeCCCCceeeeeeec
Q 048118          220 PNRYWL-CAATEQ-SIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       220 ~~~~~l-~~~~~~-~i~iwd~~~~~~~~~~~~~  250 (303)
                      .+|.+- ++..+| .|.+|+.+ ++++..++++
T Consensus       222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             CCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            556544 333333 89999988 8887777654

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.74  E-value=0.69  Score=42.54  Aligned_cols=145  Identities=17%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             CCEEEEEEeeCCCEEEEEe------CCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-------
Q 048118           82 KDVLSVAFSIDNRQIVSAS------RDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-------  146 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~------~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------  146 (303)
                      ..+...+++|+|+.++..-      .|..-.||  +..+.. ..+...+    ....-.|+|++..  +.+..       
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~----~~t~PsWspDG~~--lw~v~dg~~~~~  422 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH----SLTRPSWSLDADA--VWVVVDGNTVVR  422 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC----CCCCceECCCCCc--eEEEecCcceEE
Confidence            3566788899998776554      24333444  432222 2221111    1455678887532  22221       


Q ss_pred             -----CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEE---EeCCCCc-eE---EEe--cCCCe
Q 048118          147 -----WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL---WDLAEGK-RL---YSL--DAGAV  212 (303)
Q Consensus       147 -----~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i---wd~~~~~-~~---~~~--~~~~~  212 (303)
                           ..+.+.+.++..+....   ...+.|..+.|||||..++... +++|.+   -....|+ .+   ..+  .....
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT  498 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence                 12334444554433322   2245799999999999887665 578877   4433443 11   111  12334


Q ss_pred             EEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118          213 IHALCFSPNRYWLCAATEQSIKIWD  237 (303)
Q Consensus       213 v~~~~~s~~~~~l~~~~~~~i~iwd  237 (303)
                      +.++.|.+++.+++...++.-.+|.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~  523 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWY  523 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEE
Confidence            5788999998877655444333443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=0.094  Score=49.73  Aligned_cols=70  Identities=16%  Similarity=0.259  Sum_probs=51.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCce--EEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeee
Q 048118          180 DGSLCASGGKDGVILLWDLAEGKR--LYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       180 ~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      .+..++.|+..|.+-..|....-.  .+......+|.+++|+.+|..++.+ .+|.|.+||...++.++.+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            345678888888888877765322  2233456789999999999877665 689999999999888776553

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.58  E-value=1.2  Score=37.57  Aligned_cols=149  Identities=16%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-  157 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-  157 (303)
                      ..++|++++-. ++. ++.+. .+.|.+|++.... .......+ ....+.++....    .+++.|+....+.++..+ 
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~----~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFK----NYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET----TEEEEEESSSSEEEEEEET
T ss_pred             ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEeccc----cEEEEEEcccCEEEEEEEc
Confidence            45778888765 444 44333 4789999875544 22222111 122466666553    378889988888877443 


Q ss_pred             -CceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC-------Cc----eEEEecCCCeEEEE---EEcCC
Q 048118          158 -NCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE-------GK----RLYSLDAGAVIHAL---CFSPN  221 (303)
Q Consensus       158 -~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~----~~~~~~~~~~v~~~---~~s~~  221 (303)
                       ..+....-+ .....++++.+-++++.++.+..+|.+.++....       ++    .+..+..+..|.++   ++.|.
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~  238 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR  238 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec
Confidence             332222111 1234578888876667889999999999987752       22    23344556777776   54451


Q ss_pred             --C-------eEEEEEcCCcEEEE
Q 048118          222 --R-------YWLCAATEQSIKIW  236 (303)
Q Consensus       222 --~-------~~l~~~~~~~i~iw  236 (303)
                        +       .++.++.+|.|...
T Consensus       239 ~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  239 SGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCCCcccccceEEEEecCCEEEEE
Confidence              1       26677778888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.55  E-value=0.98  Score=36.25  Aligned_cols=134  Identities=12%  Similarity=0.076  Sum_probs=81.1

Q ss_pred             CEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe
Q 048118           94 RQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV  172 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  172 (303)
                      .+++.|+..+.++--|...... +....    ...|.+-+.--   ...++.|+..|-+++.+.+++.....+..-...=
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il----g~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL----GVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh----CceeeeeeEEE---CCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence            4566666666666666533211 11111    11122222111   2358889999999999999986555554322111


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeE-EEEEEcC-CCeEEEEEcCCcEE
Q 048118          173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVI-HALCFSP-NRYWLCAATEQSIK  234 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~~~i~  234 (303)
                      ......+++..+..|+.|++.+..|.++...++..+.+..+ .+-+..| ++.+.++...|.+-
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence            22346788999999999999999999998888887654332 2334455 45555555555543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.47  E-value=0.93  Score=42.60  Aligned_cols=71  Identities=21%  Similarity=0.469  Sum_probs=49.0

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCC----------Cce--E-EEe---------cCCCeEEEEEEcCC----CeE
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAE----------GKR--L-YSL---------DAGAVIHALCFSPN----RYW  224 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~----------~~~--~-~~~---------~~~~~v~~~~~s~~----~~~  224 (303)
                      .|..+.++|+|.+++..|..|.+ |..+..          +..  . .++         .....|..+.|+|.    ..+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            57788999999999988876544 444421          111  1 111         12357889999996    357


Q ss_pred             EEEEcCCcEEEEeCCCCc
Q 048118          225 LCAATEQSIKIWDLESKS  242 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~~~  242 (303)
                      ++..+|+.+++||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            778899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.41  E-value=0.25  Score=45.66  Aligned_cols=135  Identities=8%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             eeeeecCC-CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe--eCCC
Q 048118           18 VTAIATPI-DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS--IDNR   94 (303)
Q Consensus        18 v~~v~~~~-~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~--~~~~   94 (303)
                      |+.+...- .+.+.|+.|..||.|.+|....-............   ..-....+.|...+. -....++++++  ...+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~---~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDND---SGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccc---cccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence            55554332 46789999999999999987532110000000000   000112333443333 23478999998  7788


Q ss_pred             EEEEEeCCCcEEEEecCC-ceeeeeecCCCCccceEEEEEcCCCCC----CEEEEEeCCCcEEEEEC
Q 048118           95 QIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQ----PTIVSASWDRTVKVWNL  156 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~dg~i~iwd~  156 (303)
                      ++|.++....|.||-... ..+........+...|.+|+|-++...    ..+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            899999999999986432 111111111124556889999876521    26778899999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.37  E-value=0.29  Score=42.95  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             eEEEECCCCCEEEEE-eCC----CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcC-----------CcEEE
Q 048118          173 NTVAVSPDGSLCASG-GKD----GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATE-----------QSIKI  235 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~-~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-----------~~i~i  235 (303)
                      ....++|+++++|.+ +..    .++++.|+.+++.+...........+.|.+++..+ ....+           ..|+.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            457889999988755 333    36999999999766432111122238999996544 33322           23777


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD  292 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D  292 (303)
                      |.+.+...-..+-                ..-.....+...+..++|+++|+..+..
T Consensus       207 ~~~gt~~~~d~lv----------------fe~~~~~~~~~~~~~s~d~~~l~i~~~~  247 (414)
T PF02897_consen  207 HKLGTPQSEDELV----------------FEEPDEPFWFVSVSRSKDGRYLFISSSS  247 (414)
T ss_dssp             EETTS-GGG-EEE----------------EC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred             EECCCChHhCeeE----------------EeecCCCcEEEEEEecCcccEEEEEEEc
Confidence            7775542211110                0011112224567889999987755443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.36  E-value=1.4  Score=40.48  Aligned_cols=20  Identities=5%  Similarity=0.174  Sum_probs=15.5

Q ss_pred             CCCEEEEeecCC--eEEEEecc
Q 048118          282 DGSTLFSGYTDG--VIRVWGIG  301 (303)
Q Consensus       282 ~~~~l~~gs~Dg--~v~~w~~~  301 (303)
                      +++..++|+.||  .+..||+.
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcc
Confidence            678888999888  66667653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=1.7  Score=37.69  Aligned_cols=114  Identities=17%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             EEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCCceEE
Q 048118          129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEGKRLY  205 (303)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~  205 (303)
                      ..+..++.+. ...+....+..|.+.|..+.+......-.. .-..++++|+++.+.++..   ++++.+.|-.+...+.
T Consensus        77 ~~i~v~~~~~-~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          77 AGVAVNPAGN-KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             cceeeCCCCC-eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4566666552 245555557899999977766655443322 4567899999987755544   7899999998888877


Q ss_pred             EecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCcee
Q 048118          206 SLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIV  244 (303)
Q Consensus       206 ~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~  244 (303)
                      +...+..-..++++|++..+...  .++.|.+.|.+...+.
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            76544322788999998755444  4889999997766544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.29  E-value=1.5  Score=39.34  Aligned_cols=112  Identities=19%  Similarity=0.310  Sum_probs=69.7

Q ss_pred             ceEEEEEcCCCC--CCEEEEEeCCCcEEEEECC-----CceeEEEEc-CCCC--Ce--eEEEECCCCCEEEEEeCCCeEE
Q 048118          127 WVSCVRFSPNTL--QPTIVSASWDRTVKVWNLS-----NCKLRATLA-GHTG--YV--NTVAVSPDGSLCASGGKDGVIL  194 (303)
Q Consensus       127 ~i~~~~~~~~~~--~~~~~~~~~dg~i~iwd~~-----~~~~~~~~~-~~~~--~i--~~~~~~~~~~~l~~~~~d~~v~  194 (303)
                      .|..+.|.|-..  .+.+++.--..-|-+|.+.     ..+....-. ...+  ++  ..+.|+|....|++-.....-.
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV  137 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV  137 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence            488999998532  2356667778889999874     222222111 1111  22  3567999888876655544445


Q ss_pred             EEeCCCC--ceEEEecCCCeEEEEEEcCCCeEEEEEcCC--cEEEEeC
Q 048118          195 LWDLAEG--KRLYSLDAGAVIHALCFSPNRYWLCAATEQ--SIKIWDL  238 (303)
Q Consensus       195 iwd~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--~i~iwd~  238 (303)
                      +.+++..  +....+.....|++.+|.+||+.|+++-+.  .-++||-
T Consensus       138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            6666533  223345667899999999999766655443  4567774

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.21  E-value=1.9  Score=37.62  Aligned_cols=37  Identities=14%  Similarity=0.064  Sum_probs=29.9

Q ss_pred             eccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          266 TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       266 ~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .+.+....+.++..+|.+++.|+..+=|+|.++|+.+
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~  338 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR  338 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            3344445568899999999999999999999999864

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.01  E-value=2.2  Score=38.46  Aligned_cols=143  Identities=12%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             ecccCCEEEEEEeeCC----CEEEEEeCCCcEEEEecCC---c-eeeeeec-CC-CCccce--EEEEEcCCCCCCEEEEE
Q 048118           78 VGHTKDVLSVAFSIDN----RQIVSASRDRTIKLWNTLG---E-CKYTIQE-GD-AHTEWV--SCVRFSPNTLQPTIVSA  145 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~----~~l~t~~~d~~i~vw~~~~---~-~~~~~~~-~~-~~~~~i--~~~~~~~~~~~~~~~~~  145 (303)
                      .|+=.-|..++|.|-+    -.+++...-++|.||.+--   + .+....+ -+ ....++  ..+.|||..  ..++.-
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VL  130 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVL  130 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEE
Confidence            3444568899999853    2566677889999998631   1 1111110 00 011111  356799975  344443


Q ss_pred             eCCCcEEEEECCC--ceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCceE-----EEecCCCeEEEEE
Q 048118          146 SWDRTVKVWNLSN--CKLRATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKRL-----YSLDAGAVIHALC  217 (303)
Q Consensus       146 ~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~-----~~~~~~~~v~~~~  217 (303)
                      .....-.+++++.  ......++ ..+.|.+.+|.+||+.|+++- ..=.-++||-......     -.|+.+..|.++.
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~  209 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE  209 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE
Confidence            3333334455433  23333343 467899999999999776553 3445678985433210     0123445666654


Q ss_pred             EcCCCe
Q 048118          218 FSPNRY  223 (303)
Q Consensus       218 ~s~~~~  223 (303)
                      -.-+.+
T Consensus       210 AT~dsq  215 (671)
T PF15390_consen  210 ATVDSQ  215 (671)
T ss_pred             Eeccce
Confidence            433333

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.78  E-value=1.3  Score=40.68  Aligned_cols=69  Identities=12%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcC--CC-eEEEEEcCCcEEEEeC
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSP--NR-YWLCAATEQSIKIWDL  238 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~--~~-~~l~~~~~~~i~iwd~  238 (303)
                      ...+-+.-+.-++..++-+...++.|||.+.+...+..  .....|.++.|..  ++ .+++++..+.|.+|--
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            44555666666666666666679999999988765543  4467899998854  55 5778899999999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.77  E-value=0.82  Score=40.36  Aligned_cols=111  Identities=17%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             EEEEEEeeCCC-------EEEEEeCCCcEEEEecCCcee--eeeecCC--CCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118           84 VLSVAFSIDNR-------QIVSASRDRTIKLWNTLGECK--YTIQEGD--AHTEWVSCVRFSPNTLQPTIVSASWDRTVK  152 (303)
Q Consensus        84 i~~i~~~~~~~-------~l~t~~~d~~i~vw~~~~~~~--~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~  152 (303)
                      |+-+.+.|+.+       .-+.|-.|+.|.-||.+-..+  ......+  .......|.+-.-+   .+++.|+.+|-||
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIR  454 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIR  454 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEE
Confidence            55556665532       224466788888888642222  1111111  11223455554433   4799999999999


Q ss_pred             EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118          153 VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       153 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                      +||--.......+.+-..+|..+..+.+|++++..+ +..+.+-++
T Consensus       455 LYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  455 LYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            999733334455667778999999999999876554 556666665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.64  E-value=2.8  Score=36.69  Aligned_cols=59  Identities=8%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118          139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       139 ~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                      ...+..-+.||.+.+|+-+.......+.. .---..+.+.|....|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            35677889999999999766554444443 112234677787888999998888888764

>PHA02713 hypothetical protein; Provisional

Probab=94.50  E-value=3.8  Score=37.67  Aligned_cols=92  Identities=10%  Similarity=0.031  Sum_probs=40.7

Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC------CeEEEEeCCC-CceEE--EecCCCeEEEEEEcC
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD------GVILLWDLAE-GKRLY--SLDAGAVIHALCFSP  220 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~-~~~~~--~~~~~~~v~~~~~s~  220 (303)
                      .+..||..+++....-.-.......-...-+++..+.|+.+      ..+..||..+ .+-..  .+...-....++...
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~  512 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD  512 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence            47788887765432111111111111112245666777654      2456788876 44321  111111111222222


Q ss_pred             CCeEEEEEcCC--cEEEEeCCCC
Q 048118          221 NRYWLCAATEQ--SIKIWDLESK  241 (303)
Q Consensus       221 ~~~~l~~~~~~--~i~iwd~~~~  241 (303)
                      +..+++++.++  .+..||..+.
T Consensus       513 ~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        513 NTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CEEEEEeeecceeehhhcCcccc
Confidence            33444444455  5666776543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.36  E-value=0.38  Score=36.57  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=23.5

Q ss_pred             eEEEEEEcCCC------CEEEEeecCCeEEEEec
Q 048118          273 YCTSLNWSVDG------STLFSGYTDGVIRVWGI  300 (303)
Q Consensus       273 ~~~~~~~sp~~------~~l~~gs~Dg~v~~w~~  300 (303)
                      .+.+++|||.|      .+|++-..+|.|.+|.-
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            67889999943      37999999999999964

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.19  E-value=2.9  Score=34.92  Aligned_cols=149  Identities=13%  Similarity=0.187  Sum_probs=77.6

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-Cc
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-NC  159 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~  159 (303)
                      .+.+..+.-+++|.++++++.-....-|+.-... +.... ......|..+.|.|++  . +......|.|++=+.. ..
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~-r~~~~riq~~gf~~~~--~-lw~~~~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHN-RNSSRRIQSMGFSPDG--N-LWMLARGGQIQFSDDPDDG  218 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE---SSS-EEEEEE-TTS----EEEEETTTEEEEEE-TTEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEc-cCccceehhceecCCC--C-EEEEeCCcEEEEccCCCCc
Confidence            4568888889999999888776666678753221 22211 2245678999999985  2 3334588888877622 12


Q ss_pred             eeEEE-EcC---CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe----cCCCeEEEEEEcCCCeEEEEEcCC
Q 048118          160 KLRAT-LAG---HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL----DAGAVIHALCFSPNRYWLCAATEQ  231 (303)
Q Consensus       160 ~~~~~-~~~---~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~  231 (303)
                      +.... +..   ..-.+..+++.++++..++|+. |.+. .....|+.-...    ......+.+.|.+..+-++.+.+|
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            11111 111   1123788999998888887764 4443 233444432222    123457778887777778888888


Q ss_pred             cEEEE
Q 048118          232 SIKIW  236 (303)
Q Consensus       232 ~i~iw  236 (303)
                      .|--|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.05  E-value=4.7  Score=37.20  Aligned_cols=109  Identities=13%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-----C-c-
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-----N-C-  159 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-----~-~-  159 (303)
                      +.-+.-++..+.-+....+.|||............ ...+.|..+.|...+....+++.|....|.+|-..     + . 
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33334444444444456789999865432222211 34567899999876555678888899999888542     1 1 


Q ss_pred             --eeEEE--EcCCC-CCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118          160 --KLRAT--LAGHT-GYVNTVAVSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       160 --~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                        .....  +..++ .+|.+..|.++|..++.+  ..++.|+|-
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence              12222  33444 578899999988665544  357888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.96  E-value=1.6  Score=31.24  Aligned_cols=104  Identities=16%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCce--------eEEEEcCCCCCeeEEEE---CC--CCCEEEEEeCCCeEEEEeCCCCceEE
Q 048118          139 QPTIVSASWDRTVKVWNLSNCK--------LRATLAGHTGYVNTVAV---SP--DGSLCASGGKDGVILLWDLAEGKRLY  205 (303)
Q Consensus       139 ~~~~~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~~~~---~~--~~~~l~~~~~d~~v~iwd~~~~~~~~  205 (303)
                      .+.+++++.-|.|.+++.....        ....+. -+..|++++-   .|  +...|+.|+ ...+..||+.....++
T Consensus        10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~F   87 (136)
T PF14781_consen   10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLF   87 (136)
T ss_pred             ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhh
Confidence            4568888888999999765321        122222 3456777754   33  234566665 5678899998776665


Q ss_pred             EecCCCeEEEEEEcC----CCeEEEEEcCCcEEEEeCCCCcee
Q 048118          206 SLDAGAVIHALCFSP----NRYWLCAATEQSIKIWDLESKSIV  244 (303)
Q Consensus       206 ~~~~~~~v~~~~~s~----~~~~l~~~~~~~i~iwd~~~~~~~  244 (303)
                      .-+...-++++.+-.    ...++.++.+.+|.-||.+..+..
T Consensus        88 yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   88 YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            545556677666622    346777777788888887765544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.88  E-value=0.43  Score=26.63  Aligned_cols=31  Identities=26%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             CCeeEEEECCCC---CEEEEEeCCCeEEEEeCCC
Q 048118          170 GYVNTVAVSPDG---SLCASGGKDGVILLWDLAE  200 (303)
Q Consensus       170 ~~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~  200 (303)
                      +.+.+++|+|..   .+|+.+-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357889999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.53  E-value=4.1  Score=34.41  Aligned_cols=153  Identities=13%  Similarity=0.126  Sum_probs=84.9

Q ss_pred             CEEEEEeCCCcEEEEecCC--ceeee-eecCCCCccceE-EEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE--EEEcC
Q 048118           94 RQIVSASRDRTIKLWNTLG--ECKYT-IQEGDAHTEWVS-CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR--ATLAG  167 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~--~~~~~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~--~~~~~  167 (303)
                      ..|.+-|.||.+.-..+..  +.... ...++...+++. .-.+...+  ..++--+.+|.|+--|+......  ..+..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~--~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG--GRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT--TEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC--CeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            4677888899888776542  22111 111122222211 11122211  23444678888888887654321  11110


Q ss_pred             ----------CCCCeeEEEECCCCCEEEEEe---CCC-------eEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEE-
Q 048118          168 ----------HTGYVNTVAVSPDGSLCASGG---KDG-------VILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWL-  225 (303)
Q Consensus       168 ----------~~~~i~~~~~~~~~~~l~~~~---~d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l-  225 (303)
                                ..+.-.-+++++..+.|.+--   .++       .|-++|+.+++.+..+.....+.+++.+.+. .+| 
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~  305 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY  305 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence                      012334577877554443321   122       5677899999999999877788889998875 344 


Q ss_pred             EEE-cCCcEEEEeCCCCceeeeee
Q 048118          226 CAA-TEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       226 ~~~-~~~~i~iwd~~~~~~~~~~~  248 (303)
                      +.. .++.|.+||..++++++.++
T Consensus       306 ~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  306 ALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEcCCCCeEEEEeCcCCcEEeehh
Confidence            333 46889999999999887664

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.20  E-value=4.4  Score=33.85  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG-KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~  243 (303)
                      ...-.+.+..+.-+++|+++++++.-....-||--.. =..+.......+.++.|+|++.+...+..|.|++=+...  .
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~--~  217 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD--D  217 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT--E
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC--C
Confidence            3444567888888999999988876666677875322 123333456789999999998766667888888765111  1


Q ss_pred             eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeE
Q 048118          244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI  295 (303)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v  295 (303)
                      ..+...             +...+......+.+++|.+++...++|+....+
T Consensus       218 ~~~w~~-------------~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~  256 (302)
T PF14870_consen  218 GETWSE-------------PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL  256 (302)
T ss_dssp             EEEE----------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred             cccccc-------------ccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence            111110             001111122336789999988877777655433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.12  E-value=4  Score=33.16  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=80.4

Q ss_pred             ceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe-CCCCce
Q 048118          127 WVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD-LAEGKR  203 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd-~~~~~~  203 (303)
                      .+...+.++++.. ..+...  ....+.++.... .......+  ..++...|++++...+....+...+++. ...++.
T Consensus        25 ~~~s~AvS~dg~~-~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSR-VAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCe-EEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            4667888888643 222222  334455554332 22222222  3677889999988777766666667663 233322


Q ss_pred             -EEEec--CC-CeEEEEEEcCCCeEEEEEc----CCcEEEEeCCCCce--eeeeeeccccccccccCccceeecccccee
Q 048118          204 -LYSLD--AG-AVIHALCFSPNRYWLCAAT----EQSIKIWDLESKSI--VEDLKVDLKTEAEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       204 -~~~~~--~~-~~v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (303)
                       .....  .. ..|..+.+||||..++.-.    +++|++--+....-  ...+.             .+..........
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~-------------~~~~~~~~~~~~  167 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT-------------GPRRVAPPLLSD  167 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec-------------cceEecccccCc
Confidence             11222  12 2899999999997665543    67777765431110  00000             000001111234


Q ss_pred             EEEEEEcCCCCEEEEeecCC
Q 048118          274 CTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       274 ~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      +++++|.+++.+++.+...+
T Consensus       168 v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  168 VTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             ceeeeecCCCEEEEEeCCCC
Confidence            57899999988766555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.98  E-value=4.4  Score=33.20  Aligned_cols=99  Identities=25%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             EEEEcCCCCCCEEEEEeCCCc-EEEEECCCceeEEEEcCCCCCe--eEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Q 048118          130 CVRFSPNTLQPTIVSASWDRT-VKVWNLSNCKLRATLAGHTGYV--NTVAVSPDGSLCASGGKD-----GVILLWDLAEG  201 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~  201 (303)
                      .+.++|.... .++.+-.-|+ ..++|..+.+...++...++.-  --=.|||+|++|...-.|     |.|-|||.+.+
T Consensus        72 gi~~~p~~~r-avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPR-AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcc-eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            3566665422 3333444443 4567877665444443322211  112589999998765433     78999999754


Q ss_pred             -ceEEEecC-CCeEEEEEEcCCCeEEEEEc
Q 048118          202 -KRLYSLDA-GAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       202 -~~~~~~~~-~~~v~~~~~s~~~~~l~~~~  229 (303)
                       +.+..+.. +--...+.+.+||..+++..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeC
Confidence             34444432 33456788889998777654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.95  E-value=4.5  Score=33.26  Aligned_cols=121  Identities=16%  Similarity=0.250  Sum_probs=75.7

Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--CeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCce
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSI  243 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~  243 (303)
                      +-...+.++.|+|+.+.|.+......-.++=-.+|+.+.+++..  .-.-.+.+..+++++++.. ++.++++.+..+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            33455999999999998887777776667766778888887543  2233466666777666554 67888887765533


Q ss_pred             eeee---eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          244 VEDL---KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       244 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +...   ++.+....             +++...-.++|.|..+.|..+=+-+=+++|.+
T Consensus       163 ~~~~~~~~i~L~~~~-------------k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         163 VISAKVQKIPLGTTN-------------KKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             EEeccceEEeccccC-------------CCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence            2222   22222111             11222345788888887777766666666543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.79  E-value=9.6  Score=36.68  Aligned_cols=152  Identities=13%  Similarity=0.067  Sum_probs=88.8

Q ss_pred             CEEEEEEeeC-CCEEEEEeC----------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           83 DVLSVAFSID-NRQIVSASR----------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        83 ~i~~i~~~~~-~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      .|.++.|..+ +.+++.|..          .|.|.++...............-.+.+.++.--.    ..+ .++-...|
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn----gkl-lA~In~~v  850 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN----GKL-LAGINQSV  850 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC----CeE-EEecCcEE
Confidence            3556667777 566766652          2445555443211111111111122333332221    123 35677899


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC--CCceE--EEecCCCeEEEEEEcCCCeEEEE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA--EGKRL--YSLDAGAVIHALCFSPNRYWLCA  227 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~--~~~~~--~~~~~~~~v~~~~~s~~~~~l~~  227 (303)
                      ++|+..+.+..+.-..+..++..+.+.-.|..+++|..=+.+.+.-.+  .++-+  ..--.+.++.++.+-.+..++.+
T Consensus       851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga  930 (1096)
T KOG1897|consen  851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA  930 (1096)
T ss_pred             EEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence            999998776666556677888888888889999999876766665443  32221  11112456777777777777777


Q ss_pred             EcCCcEEEEeCC
Q 048118          228 ATEQSIKIWDLE  239 (303)
Q Consensus       228 ~~~~~i~iwd~~  239 (303)
                      -.+|.+++-...
T Consensus       931 e~~gNlf~v~~d  942 (1096)
T KOG1897|consen  931 ENSGNLFTVRKD  942 (1096)
T ss_pred             cccccEEEEEec
Confidence            778887776543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.79  E-value=4  Score=38.52  Aligned_cols=89  Identities=15%  Similarity=0.229  Sum_probs=53.3

Q ss_pred             CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC--c--eeeeeeeccccccccccCccceeeccccceeEEEEEEcCC---
Q 048118          210 GAVIHALCFSPNRYWLCAATEQSIKIWDLESK--S--IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD---  282 (303)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---  282 (303)
                      ...|..+.+||+|.+++......|.|-.+-..  .  .....+..  ..+...... ...........+..+.|+|.   
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~--i~Crt~~v~-~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKE--INCRTVPVD-ERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcc--eeEEEEEec-hhhccCCCCceEEEEEEcCCCCC
Confidence            45789999999999998887777777665321  0  00000000  000000000 00111233456778999997   


Q ss_pred             CCEEEEeecCCeEEEEecc
Q 048118          283 GSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       283 ~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+|++=.+|+++|+||+.
T Consensus       161 ~~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             CCeEEEEecCCEEEEEecC
Confidence            4788889999999999985

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.70  E-value=2.1  Score=41.59  Aligned_cols=143  Identities=10%  Similarity=0.076  Sum_probs=84.2

Q ss_pred             CEEEEEEeeCCCE--EEEEeCCCcEEEEecCCceeee------eec---CCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           83 DVLSVAFSIDNRQ--IVSASRDRTIKLWNTLGECKYT------IQE---GDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        83 ~i~~i~~~~~~~~--l~t~~~d~~i~vw~~~~~~~~~------~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      +|..+...+|+..  ++..+++-.|..||+..-+...      +..   .........++.|+|... ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            4555555666543  3334444567788874321111      000   000112245788888653 245667789999


Q ss_pred             EEEECCCcee-EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-----CCCeEEEEEEcCCCeEE
Q 048118          152 KVWNLSNCKL-RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-----AGAVIHALCFSPNRYWL  225 (303)
Q Consensus       152 ~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l  225 (303)
                      ++..+..... ...+. -....++++|+|.|+.|+.|-..|++.-|... .+....+.     ....|.+++|-....++
T Consensus       181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            9887643221 11111 24568999999999999999999999888643 22222221     13578899997776666


Q ss_pred             EEE
Q 048118          226 CAA  228 (303)
Q Consensus       226 ~~~  228 (303)
                      ++-
T Consensus       259 vvy  261 (1405)
T KOG3630|consen  259 VVY  261 (1405)
T ss_pred             EEe
Confidence            543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.61  E-value=4.3  Score=32.22  Aligned_cols=92  Identities=14%  Similarity=0.213  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCCCEEEEEeCCCcEEEEE--CCCce-----eEEEEcC---C-CCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118          129 SCVRFSPNTLQPTIVSASWDRTVKVWN--LSNCK-----LRATLAG---H-TGYVNTVAVSPDGSLCASGGKDGVILLWD  197 (303)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~dg~i~iwd--~~~~~-----~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  197 (303)
                      +.++|+.+... .-..-+.+-+|.-||  ..++.     .+..++.   . ...--.+++..+|.+.+++-..++|...|
T Consensus       161 Ngl~Wd~d~K~-fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKK-FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcE-EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35667644322 223345556676666  44432     2222221   0 11223456677888888888999999999


Q ss_pred             CCCCceEEEecC-CCeEEEEEEcCC
Q 048118          198 LAEGKRLYSLDA-GAVIHALCFSPN  221 (303)
Q Consensus       198 ~~~~~~~~~~~~-~~~v~~~~~s~~  221 (303)
                      ..+|+.+..+.. ...+.++||--.
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCC
Confidence            999999988754 567899999543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.40  E-value=7.6  Score=34.67  Aligned_cols=70  Identities=21%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeC---------CCCceEEE------------ecCCCeEEEEEEcCCC----eEE
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDL---------AEGKRLYS------------LDAGAVIHALCFSPNR----YWL  225 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~---------~~~~~~~~------------~~~~~~v~~~~~s~~~----~~l  225 (303)
                      .|..+..++.|..++..+.+|.+.+.=.         +.++....            -...-.+.+++|+|+.    .++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3667788999999988888997766431         12221111            1112245667777753    455


Q ss_pred             EEEcCCcEEEEeCCC
Q 048118          226 CAATEQSIKIWDLES  240 (303)
Q Consensus       226 ~~~~~~~i~iwd~~~  240 (303)
                      ...+|+.|++||+..
T Consensus       185 iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEecCcEEEEEecCC
Confidence            566677777777643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.36  E-value=0.89  Score=24.87  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=26.6

Q ss_pred             CCCCEEEEE-eCCCeEEEEeCCCCceEEEecCCCeEEEEEE
Q 048118          179 PDGSLCASG-GKDGVILLWDLAEGKRLYSLDAGAVIHALCF  218 (303)
Q Consensus       179 ~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  218 (303)
                      |+++.|.++ ..+++|.++|..+++.+..+..+.....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            566665554 4588999999988887777655444444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.02  E-value=7.4  Score=33.60  Aligned_cols=140  Identities=16%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             CEEEEEEeeCCCEEEEEe-----------CCC-cEEEEec-CCcee---eeeecCCCCccceEEEEEcCCCCCCEEEEEe
Q 048118           83 DVLSVAFSIDNRQIVSAS-----------RDR-TIKLWNT-LGECK---YTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS  146 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~-----------~d~-~i~vw~~-~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  146 (303)
                      ....|+|.++|.++++..           ..+ .|.+++. .+...   ..+.. + .......+++.+++    ++.+.
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~-~l~~p~Gi~~~~~G----lyV~~   88 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-E-ELSMVTGLAVAVGG----VYVAT   88 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-c-CCCCccceeEecCC----EEEeC
Confidence            445789999998777653           122 5666643 21111   11111 1 11234667777764    33334


Q ss_pred             CCCcEEEEECCCc-----e---eEEEEcC----CCCCeeEEEECCCCCEEEEEeCC-------------------CeEEE
Q 048118          147 WDRTVKVWNLSNC-----K---LRATLAG----HTGYVNTVAVSPDGSLCASGGKD-------------------GVILL  195 (303)
Q Consensus       147 ~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~v~i  195 (303)
                      .....++.|....     +   +...+..    +......+.|.|+|.+.++-+..                   |.|.-
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            4443344444221     1   1122322    12346789999999865544421                   33444


Q ss_pred             EeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEc
Q 048118          196 WDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       196 wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~  229 (303)
                      +|..+++. ..+..+ -....++|+|++.++++..
T Consensus       169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            44433321 111111 1235688999887765543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=91.86  E-value=9.9  Score=34.70  Aligned_cols=61  Identities=18%  Similarity=0.170  Sum_probs=30.5

Q ss_pred             EEEEEeCC-----CcEEEEECCCceeEEEEcCCCCC-eeEEEECCCCCEEEEEeCC------CeEEEEeCCCCc
Q 048118          141 TIVSASWD-----RTVKVWNLSNCKLRATLAGHTGY-VNTVAVSPDGSLCASGGKD------GVILLWDLAEGK  202 (303)
Q Consensus       141 ~~~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~  202 (303)
                      ..+.||.+     ..+..||..+++....-.-.... -.+++ .-+++..+.|+.+      ..+..||+.+.+
T Consensus       345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            45556654     34777888766543211100111 11112 1245666777632      357788887654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.58  E-value=2.9  Score=36.53  Aligned_cols=83  Identities=20%  Similarity=0.274  Sum_probs=53.3

Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--CC---eEEEEEEcC--------------CCeEE
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GA---VIHALCFSP--------------NRYWL  225 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~---~v~~~~~s~--------------~~~~l  225 (303)
                      +......+.++..+|.+++.++...=|+|.++|+.++..++.++.  +.   .+....-..              ...+|
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            333445688899999999888877779999999999887766642  11   111111000              01333


Q ss_pred             EEE--cCCcEEEEeCCCCceeeee
Q 048118          226 CAA--TEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       226 ~~~--~~~~i~iwd~~~~~~~~~~  247 (303)
                      +.-  --|.|.+|.++++..+...
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEE
Confidence            332  3688999999988765443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.29  E-value=12  Score=34.54  Aligned_cols=106  Identities=13%  Similarity=0.147  Sum_probs=52.6

Q ss_pred             CCCEEEEEeCC-C-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-----cEEEEECCCce
Q 048118           92 DNRQIVSASRD-R-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-----TVKVWNLSNCK  160 (303)
Q Consensus        92 ~~~~l~t~~~d-~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-----~i~iwd~~~~~  160 (303)
                      ++...++||.| +     .+-.||...+............... .++.. +  ....+.||.||     ++..||..+.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l-~--g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL-D--GKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE-C--CEEEEEeccccccccccEEEecCCCCc
Confidence            45677888888 2     4556666554432221111111111 11111 1  23567788876     47788887665


Q ss_pred             eEEEEcCCCCCeeEEEE-CCCCCEEEEEeCCC------eEEEEeCCCCc
Q 048118          161 LRATLAGHTGYVNTVAV-SPDGSLCASGGKDG------VILLWDLAEGK  202 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~------~v~iwd~~~~~  202 (303)
                      ....-. .......... .-+|+..++|+.++      ++..||..+.+
T Consensus       408 W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  408 WTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             ccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            432111 1112222221 22577778888654      45677776654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.09  E-value=10  Score=33.28  Aligned_cols=117  Identities=9%  Similarity=0.137  Sum_probs=56.2

Q ss_pred             EEEEEeeCCCEEEEEeC--------------------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE-EE
Q 048118           85 LSVAFSIDNRQIVSASR--------------------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT-IV  143 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~--------------------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~  143 (303)
                      +..-|.|....++|...                    .+++.+||+......+.............++|..+..... ++
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv  263 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV  263 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence            45666777777777653                    3689999997655443332222222345677776554332 34


Q ss_pred             EEeCCCcEEEE-ECCCcee----EEEEcC-----C------------CCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q 048118          144 SASWDRTVKVW-NLSNCKL----RATLAG-----H------------TGYVNTVAVSPDGSLCASGG-KDGVILLWDLAE  200 (303)
Q Consensus       144 ~~~~dg~i~iw-d~~~~~~----~~~~~~-----~------------~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~  200 (303)
                      .+.-.++|..| .-.+++.    +.++..     -            ..-|+.+.+|.|.++|..+. ..|.++-||+..
T Consensus       264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            33444455444 3233332    111111     1            13478999999999886554 699999999975


Q ss_pred             C
Q 048118          201 G  201 (303)
Q Consensus       201 ~  201 (303)
                      .
T Consensus       344 P  344 (461)
T PF05694_consen  344 P  344 (461)
T ss_dssp             T
T ss_pred             C
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.07  E-value=7.6  Score=31.87  Aligned_cols=157  Identities=17%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             EEeeCCCEEEEEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe----------------
Q 048118           88 AFSIDNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS----------------  146 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------  146 (303)
                      .|+|+|.+|...-+|     |.|=|||...... .+-....|--....+.+.+++.  .++.+.                
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fq-rvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNl  196 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-RVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNL  196 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccc-eecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccch
Confidence            489999998876554     6788998752211 1111122222234566666652  222211                


Q ss_pred             --CCCcEEEEECCCceeEEE--Ec--CCCCCeeEEEECCCCCEEEEEeCCCe-----EEEEeCCCCceEEEecC------
Q 048118          147 --WDRTVKVWNLSNCKLRAT--LA--GHTGYVNTVAVSPDGSLCASGGKDGV-----ILLWDLAEGKRLYSLDA------  209 (303)
Q Consensus       147 --~dg~i~iwd~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~~-----v~iwd~~~~~~~~~~~~------  209 (303)
                        .+-++.+.|..++.++.+  +.  -+.-.|.-++..++|..++-+-..|.     --+=-...++++..++.      
T Consensus       197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~  276 (366)
T COG3490         197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA  276 (366)
T ss_pred             hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence              111233334334433222  11  22345666667676665544322221     00111122333333221      


Q ss_pred             --CCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeee
Q 048118          210 --GAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       210 --~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~  247 (303)
                        ...+-+++.+.+..+++.++  .+...+||..++.++.+-
T Consensus       277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence              23566778776555554443  567889999999887653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.87  E-value=15  Score=35.08  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=68.6

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCC--------eeEEEEC----------------CCCCEEEEEeCCCeEEEE
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGY--------VNTVAVS----------------PDGSLCASGGKDGVILLW  196 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~~----------------~~~~~l~~~~~d~~v~iw  196 (303)
                      .+..++.++.|.-.|.++++.+.++......        +..+.+-                ..+..++.++.|+++.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            5666777888888898888876665432110        1222221                123477788899999999


Q ss_pred             eCCCCceEEEecCCCeEE-------------EEEEcC---CCeEEEEEc----------CCcEEEEeCCCCceeeeee
Q 048118          197 DLAEGKRLYSLDAGAVIH-------------ALCFSP---NRYWLCAAT----------EQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       197 d~~~~~~~~~~~~~~~v~-------------~~~~s~---~~~~l~~~~----------~~~i~iwd~~~~~~~~~~~  248 (303)
                      |.++|+.+..+.....+.             ...-.|   ++.+++.+.          .|.|+-+|.++++++-...
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999999887664322221             011112   345554432          5789999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.31  E-value=12  Score=32.97  Aligned_cols=151  Identities=15%  Similarity=0.218  Sum_probs=61.4

Q ss_pred             EEEEeCCCcEEEEECCC-------ceeEEEE-cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEE------
Q 048118          142 IVSASWDRTVKVWNLSN-------CKLRATL-AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYS------  206 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~-------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~------  206 (303)
                      .+....|..+.+|+...       ......+ .++...+.+        .+++....|.|+.|+--+... +.+      
T Consensus        39 ~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~--------v~lv~p~~G~v~f~~~I~~~l~~~t~~~i~l  110 (422)
T PF08801_consen   39 RAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPG--------VGLVKPKTGRVVFWESISHLLVLATPSQISL  110 (422)
T ss_dssp             EEEEEETTEEEEEE--SS--GG--EEEEE-----------S--------EEEEE-TT-EEEEES-TT-TT--EEEE----
T ss_pred             EEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCce--------EEEEEcCCCCEEecccchhhhhcCccccccc
Confidence            35556788999999742       2211122 222222222        344556688888887432211 111      


Q ss_pred             -------ecCCC-eEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccc-cc-----cccCccceee-ccccc
Q 048118          207 -------LDAGA-VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTE-AE-----KSEATTATTT-IKKKN  271 (303)
Q Consensus       207 -------~~~~~-~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~-~~~~~  271 (303)
                             +..+. .+......+.+ ++++.+.|+|.+.-.+...-+.++....... ..     .......... .....
T Consensus       111 ~gv~~~~l~~~e~~~~~~~~~~~~-~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~  189 (422)
T PF08801_consen  111 LGVSYSELLSGELSTSLTNVEPSG-FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPR  189 (422)
T ss_dssp             --------------EEEEEEETTT-EEEEETT--EEEEEE-TTS-EEEEE-TT---------------------------
T ss_pred             cccceeeecCCceEEECCCCceEE-EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccch
Confidence                   11111 12222333444 5566667777777665532333332211111 00     0000000000 01112


Q ss_pred             eeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          272 IYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       272 ~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..+..+...+..+.|.+-..+|.|.+|+++
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            336778888888999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.90  E-value=14  Score=32.93  Aligned_cols=54  Identities=19%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEec------CCCeEEEEEEcCCC
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSLD------AGAVIHALCFSPNR  222 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~------~~~~v~~~~~s~~~  222 (303)
                      -..-+.|+|.|++++|++--..|+|++++..++..  +..+.      ...-...++++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            45668899999998777665569999998654432  21111      13446778998874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=89.82  E-value=12  Score=31.97  Aligned_cols=149  Identities=12%  Similarity=0.113  Sum_probs=81.6

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEE-EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIK-LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~-vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      .+.+..+.+.+++.+++++.. |.+. .++..+. .+.... ......+.++.+.+++  ..+ ..+..|.+++=....+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~-tW~~~~-~~~~~~l~~i~~~~~g--~~~-~vg~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQT-AWTPHQ-RNSSRRLQSMGFQPDG--NLW-MLARGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCC-eEEEee-CCCcccceeeeEcCCC--CEE-EEecCCEEEEccCCCC
Confidence            346788889898877765544 4433 2332222 222221 2234567888888865  233 3456677654223333


Q ss_pred             eeEEEEcC----CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCCCeEEEEEcCC
Q 048118          160 KLRATLAG----HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPNRYWLCAATEQ  231 (303)
Q Consensus       160 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~  231 (303)
                      ..-.....    ....+.++.+.|+++.++++ .+|.+.. ....++.-....    .....+.+.|..++..++++..|
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence            32221111    12347788899877765544 5676543 333343322221    12356777777777778888888


Q ss_pred             cEEEEe
Q 048118          232 SIKIWD  237 (303)
Q Consensus       232 ~i~iwd  237 (303)
                      .|-.|+
T Consensus       324 ~il~~~  329 (334)
T PRK13684        324 VLLRYV  329 (334)
T ss_pred             eEEEec
Confidence            887775

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.58  E-value=16  Score=33.33  Aligned_cols=107  Identities=14%  Similarity=0.080  Sum_probs=67.0

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCC-CCee----------EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHT-GYVN----------TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~----------~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  209 (303)
                      .++.++.++.|.-.|..+++.+.++.... ..+.          .+++  .+..++.++.|+.+.-.|.++|+.+.....
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            56667778889999998888776554211 1111          1122  134567788899999999999998877643


Q ss_pred             CCeE--EEEEEcC---CCeEEEEEc------CCcEEEEeCCCCceeeeeee
Q 048118          210 GAVI--HALCFSP---NRYWLCAAT------EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       210 ~~~v--~~~~~s~---~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~  249 (303)
                      ...-  ..+.-+|   ++.+++...      +|.|..+|.++++++-....
T Consensus       149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            2110  0111112   445554432      57899999999998866543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.43  E-value=10  Score=30.81  Aligned_cols=111  Identities=21%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             CeeEEEECCCCCEEEEEe---CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEe-CCCCceee
Q 048118          171 YVNTVAVSPDGSLCASGG---KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWD-LESKSIVE  245 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd-~~~~~~~~  245 (303)
                      .+.+.+++++++.++...   ....+.++..  +...........+..-+|++++.+.++ ..+....++. ...++.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~-  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE-  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence            678899999998776555   3345555543  333333323446667788888754444 3344445553 2222211 


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee---cCCeEEEEec
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY---TDGVIRVWGI  300 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs---~Dg~v~~w~~  300 (303)
                      ...++..             ...  . .+.++.+||||..++.-.   .++.|.+=.+
T Consensus       102 ~~~v~~~-------------~~~--~-~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  102 PVEVDWP-------------GLR--G-RITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             eEEeccc-------------ccC--C-ceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            1111100             000  0 568899999998766554   3566665444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.40  E-value=10  Score=30.83  Aligned_cols=192  Identities=11%  Similarity=0.076  Sum_probs=105.2

Q ss_pred             EEEEEeeCCCEEEEEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCcee
Q 048118           85 LSVAFSIDNRQIVSASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKL  161 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~  161 (303)
                      ..+.|..++.++-+.+.-|  .|+.+|+.+.........+. ...-..+....+    .+.--.+ ++...+||..+.+.
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d----~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGD----KLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETT----EEEEEESSSSEEEEEETTTTEE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECC----EEEEEEecCCeEEEEccccceE
Confidence            3577777888888888766  67788876533222211111 111123333322    2333333 57888999998888


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---C---CeEEEEEEcCCCeEEEEE-cCCcEE
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---G---AVIHALCFSPNRYWLCAA-TEQSIK  234 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~---~~v~~~~~s~~~~~l~~~-~~~~i~  234 (303)
                      ..++.- .+.=+.++  .+++.|+.+....++..+|..+.+...++..   +   ..++-+.|- +|.+.|-. ....|.
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~  198 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV  198 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence            777754 34556676  4566666666677999999888776665532   2   235556665 56655554 467899


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      ..|..+|++...+.+............     ........+.|+|.|....|.+.+
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~-----~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKS-----RQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTS-----T--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEEhhHhhhccccccc-----ccccCCeeEeEeEeCCCCEEEEEe
Confidence            999999999887764321111000000     000123347899988876544433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.14  E-value=2.7  Score=38.50  Aligned_cols=68  Identities=19%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             CEEEEEeCCCcEEEEECCC----ce-eEEEE-cC--------------------CCCCeeEEEECC----CCCEEEEEeC
Q 048118          140 PTIVSASWDRTVKVWNLSN----CK-LRATL-AG--------------------HTGYVNTVAVSP----DGSLCASGGK  189 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~----~~-~~~~~-~~--------------------~~~~i~~~~~~~----~~~~l~~~~~  189 (303)
                      ..++.+..||.+...+...    +. ..... ..                    .......+++++    +..++++-+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            3577778898888776643    11 11111 10                    012345566666    6678999999


Q ss_pred             CCeEEEEeCCCCceEEEe
Q 048118          190 DGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       190 d~~v~iwd~~~~~~~~~~  207 (303)
                      |+++|+||+.+++++.+.
T Consensus       239 D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  239 DHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TSEEEEEETTTTCEEEEE
T ss_pred             CCeEEEEECCCCeEEEEe
Confidence            999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.08  E-value=1.6  Score=24.37  Aligned_cols=28  Identities=11%  Similarity=0.093  Sum_probs=23.3

Q ss_pred             EEEEEEcCCC---CEEEEeecCCeEEEEecc
Q 048118          274 CTSLNWSVDG---STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       274 ~~~~~~sp~~---~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.++.|||..   .+|+-+-.-|.|+++|+-
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            4568899854   489999999999999984

It contains a characteristic DLL sequence motif.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.07  E-value=12  Score=32.34  Aligned_cols=106  Identities=11%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCC--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC--eEEEE
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGH--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHAL  216 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~~  216 (303)
                      .+..+..+|.|.-.|..+++.+.....-  ...+..-.+..+|+ +..++.++.+...|.++++.+.......  .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            4556677887877887777644322111  11222222223565 6678888899999998899888776555  12222


Q ss_pred             EEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118          217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       217 ~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      ..-.++..+..+.++.++..|..+++.+...
T Consensus       149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             cEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence            2222444444445677777777777665443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.90  E-value=9.2  Score=37.49  Aligned_cols=93  Identities=13%  Similarity=0.030  Sum_probs=56.4

Q ss_pred             eCCCcEEEEECCCceeEE-----EEcCC------CCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCC-ceEEEecCCCe
Q 048118          146 SWDRTVKVWNLSNCKLRA-----TLAGH------TGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEG-KRLYSLDAGAV  212 (303)
Q Consensus       146 ~~dg~i~iwd~~~~~~~~-----~~~~~------~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~  212 (303)
                      +.+..|..||++......     -+..|      .....++.|+|.-. ..++...|+.|++.-+... +.+..+.....
T Consensus       121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~  200 (1405)
T KOG3630|consen  121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNS  200 (1405)
T ss_pred             cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccc
Confidence            344568889986532111     11111      12345677888543 3466778888888766432 22334455677


Q ss_pred             EEEEEEcCCCeEEEEE-cCCcEEEEeC
Q 048118          213 IHALCFSPNRYWLCAA-TEQSIKIWDL  238 (303)
Q Consensus       213 v~~~~~s~~~~~l~~~-~~~~i~iwd~  238 (303)
                      ..+++|+|.|.-++++ ..|.+.-|..
T Consensus       201 ~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  201 QTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             eeeEEeccccceeeEecCCCeEEEeec
Confidence            8999999998666555 5677777654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.80  E-value=12  Score=30.58  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             cceEEEEEcCCCCCCEEEEEeCCC--cEEEEECCCceeEEEEcCCCC-CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Q 048118          126 EWVSCVRFSPNTLQPTIVSASWDR--TVKVWNLSNCKLRATLAGHTG-YVNTVAVSPDGSLCASGGKDGVILLWDLAEGK  202 (303)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  202 (303)
                      .....+.|..++  ..+-+.+.-|  .|+.+|+.+++......-... ---.+.... ++.....-.+++..+||..+-+
T Consensus        45 aFTQGL~~~~~g--~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDDG--TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEETT--EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCCC--EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccce
Confidence            345677774443  2444555544  699999999886654432211 112343332 3444556678999999999988


Q ss_pred             eEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118          203 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      .+.++.....=..++. .+..++.+....+|+++|.++.+..+.+.+.
T Consensus       122 ~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             EEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            8888866555556663 2345555555678999999888887777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.77  E-value=6.7  Score=31.11  Aligned_cols=83  Identities=17%  Similarity=0.248  Sum_probs=44.8

Q ss_pred             CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          210 GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       210 ~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      +.++..+... +..+++...+|.+++||+++++.+-.- +.+.+-..... .. .   ......+..+..+.+|.-|++=
T Consensus        12 gs~~~~l~~~-~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~-~~-~---~~~~~~i~~~~lt~~G~PiV~l   84 (219)
T PF07569_consen   12 GSPVSFLECN-GSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSP-VS-D---KSSSPNITSCSLTSNGVPIVTL   84 (219)
T ss_pred             CCceEEEEeC-CCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccc-cc-c---CCCCCcEEEEEEcCCCCEEEEE
Confidence            4444444432 456778889999999999988765322 11111000000 00 0   0223345666677777655543


Q ss_pred             ecCCeEEEEec
Q 048118          290 YTDGVIRVWGI  300 (303)
Q Consensus       290 s~Dg~v~~w~~  300 (303)
                       .+|..+.|+.
T Consensus        85 -sng~~y~y~~   94 (219)
T PF07569_consen   85 -SNGDSYSYSP   94 (219)
T ss_pred             -eCCCEEEecc
Confidence             4577788865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.97  E-value=16  Score=31.30  Aligned_cols=145  Identities=20%  Similarity=0.250  Sum_probs=70.6

Q ss_pred             ccceEEEEEcCCCCCCEEEEEeCCC---cEEEEECCCceeEEEEcC----CCCCeeEEEEC-CCCCEE-EEEeCCC--eE
Q 048118          125 TEWVSCVRFSPNTLQPTIVSASWDR---TVKVWNLSNCKLRATLAG----HTGYVNTVAVS-PDGSLC-ASGGKDG--VI  193 (303)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~dg---~i~iwd~~~~~~~~~~~~----~~~~i~~~~~~-~~~~~l-~~~~~d~--~v  193 (303)
                      ...+..+.|.+++....+....++.   .+.++|..++.....+..    .-..-....+. +++..+ .....||  .|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            4567888898876322333344443   356677766544322221    11223355554 666544 4444666  45


Q ss_pred             EEEeCCCCceEEEecC-CCeE-EEEEEcCCCeEEE-EEc-----CCcEEEEeCCCCceeeeeeeccccccccccCcccee
Q 048118          194 LLWDLAEGKRLYSLDA-GAVI-HALCFSPNRYWLC-AAT-----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATT  265 (303)
Q Consensus       194 ~iwd~~~~~~~~~~~~-~~~v-~~~~~s~~~~~l~-~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (303)
                      .+.+...+.. ..+.. .-.| ..+.+++++..+. .+.     ...|+.-+++.+..+..+....              
T Consensus       263 y~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~--------------  327 (353)
T PF00930_consen  263 YLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED--------------  327 (353)
T ss_dssp             EEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS--------------
T ss_pred             EEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC--------------
Confidence            5556655543 34433 3345 3467788764443 332     1245555555122222222110              


Q ss_pred             eccccceeEEEEEEcCCCCEEEEee
Q 048118          266 TIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       266 ~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                        ..+    ..+.|||++++++..+
T Consensus       328 --~~~----~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  328 --GDH----YSASFSPDGKYYVDTY  346 (353)
T ss_dssp             --STT----EEEEE-TTSSEEEEEE
T ss_pred             --CCc----eEEEECCCCCEEEEEE
Confidence              011    4678999999877443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.84  E-value=19  Score=35.94  Aligned_cols=159  Identities=13%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             EEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEE--------CCCCCEEEEEeCCCeEEEEeCCC----Cc-e----EE
Q 048118          143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV--------SPDGSLCASGGKDGVILLWDLAE----GK-R----LY  205 (303)
Q Consensus       143 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~v~iwd~~~----~~-~----~~  205 (303)
                      +-.+.|..+.+|+.+++.-...+.+-...|..+..        .|.=++|++-+.--.|.++-+..    +. .    ..
T Consensus        93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            44567899999999875544555554444544432        23334544444444455554321    11 1    12


Q ss_pred             EecC-CCeEEEEEEcCCCeEEEEEcCCcEEE--EeCCCCceee-eeeeccccccccccCccceeecc-ccceeEEEEEEc
Q 048118          206 SLDA-GAVIHALCFSPNRYWLCAATEQSIKI--WDLESKSIVE-DLKVDLKTEAEKSEATTATTTIK-KKNIYCTSLNWS  280 (303)
Q Consensus       206 ~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~i--wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s  280 (303)
                      ++.. +..|+++....+|.++.++.||.|+=  |....+=.-+ .-++.+.......-.++ ...+. .+...+..+...
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEec
Confidence            2222 56788888888899998888885432  2222110000 00111100000000000 11111 223345666666


Q ss_pred             CCCCEEEEeecCCeEEEEeccc
Q 048118          281 VDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       281 p~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .....+.+=+..|+|.+|+++.
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            6667888999999999999853

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.75  E-value=0.066  Score=46.44  Aligned_cols=140  Identities=11%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      .....|-+.+.-++.++.+..+..||..+.-....    ..+.....++|..++.. .++.+-..+.+.+||+++....+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~----n~tg~aldm~wDkegdv-lavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL----NPTGKALDMAWDKEGDV-LAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceeccc----CCchhHhhhhhccccch-hhhhhhcCCCeeechhhhhhHHH
Confidence            34556778777788888888899998644321111    11222334566665432 44556678899999997543211


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  228 (303)
                      .-.+....-.-+.|++....++.+...|.+.+++-...+.+.... ..-.+.+.++.+.++.+..+
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            111111111226788888888888889999999987655443332 44567788888877665444

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.02  E-value=8.6  Score=33.75  Aligned_cols=101  Identities=16%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeee--ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTI--QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      -+++|.+|.|++|.+.+|.--.|++|.+++..++.....  +..+..+..|....|..+.   .++-.... -+.+|...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~-G~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST---EIAFITDQ-GIEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe---eEEEEecC-CeEEEEEc
Confidence            356899999999999999999999999998754432211  1223345568888888763   23333333 34455443


Q ss_pred             Cce-eEEEEcCCCCCeeEEEECCCCCEE
Q 048118          158 NCK-LRATLAGHTGYVNTVAVSPDGSLC  184 (303)
Q Consensus       158 ~~~-~~~~~~~~~~~i~~~~~~~~~~~l  184 (303)
                      ..+ ..+..+.|+-.|.=..|.++.+.+
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceE
Confidence            322 223344566666666777766643

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.49  E-value=19  Score=30.60  Aligned_cols=49  Identities=24%  Similarity=0.440  Sum_probs=32.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEec-----CCCeEEEEEEcCC
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSLD-----AGAVIHALCFSPN  221 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-----~~~~v~~~~~s~~  221 (303)
                      .-+.|+|.|+|++|++ ...|+|++++ ..+..   +....     .......++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            3478999999988765 5699999999 33332   32221     2345788999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK10115 protease 2; Provisional

Probab=86.28  E-value=31  Score=32.76  Aligned_cols=108  Identities=10%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             eeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC-------CcEEEEeCC
Q 048118          172 VNTVAVSPDGSLCASGGKDG-----VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE-------QSIKIWDLE  239 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~i~iwd~~  239 (303)
                      +..+.++|++++|+.+...+     ++++.|+.++..+........ ..++|++++..+..+..       ..|+.+++.
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC


Q ss_pred             CC--ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC---eEEEEe
Q 048118          240 SK--SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG---VIRVWG  299 (303)
Q Consensus       240 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg---~v~~w~  299 (303)
                      ++  +....+.                   ............+.++++++..+..+   .+.+++
T Consensus       208 t~~~~d~lv~~-------------------e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~  253 (686)
T PRK10115        208 TPASQDELVYE-------------------EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD  253 (686)
T ss_pred             CChhHCeEEEe-------------------eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=85.93  E-value=24  Score=31.11  Aligned_cols=58  Identities=10%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc-----eEEEecCCCeEEEEEEcC-----CCeEEEEEcCCcEEEEeC
Q 048118          181 GSLCASGGKDGVILLWDLAEGK-----RLYSLDAGAVIHALCFSP-----NRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       181 ~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~i~iwd~  238 (303)
                      ...+++||..|.++|++...+.     .+...+...+|-++..-.     +...||+-.-.++.+|.+
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v  104 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSV  104 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEE
Confidence            3588999999999999985433     344445567777776532     346778888889999987

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=85.57  E-value=21  Score=30.06  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCC--c----ee-EEEEcCCCCCeeEEEECCCCCEEEEEeCCC-eEEEEeCC
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--C----KL-RATLAGHTGYVNTVAVSPDGSLCASGGKDG-VILLWDLA  199 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--~----~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~  199 (303)
                      -+.++|+|++. ...++=+..+.|.-|++..  +    +. ...+....+..-.++...+|.+.+++...| .|.+|+..
T Consensus       165 ~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         165 PNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             cCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            46799999874 2334444457788887642  1    11 122223345566788888898876554444 99999987


Q ss_pred             CCceEEEecCC-CeEEEEEEcC
Q 048118          200 EGKRLYSLDAG-AVIHALCFSP  220 (303)
Q Consensus       200 ~~~~~~~~~~~-~~v~~~~~s~  220 (303)
                       ++.+..+... ..+.+++|--
T Consensus       244 -G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         244 -GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             -CcEEEEEECCCCCCccceEeC
Confidence             8887777654 6677777754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.99  E-value=25  Score=30.48  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             EEeeCCCEEE-EEeCCCcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           88 AFSIDNRQIV-SASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        88 ~~~~~~~~l~-t~~~d~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      +|.++|+.|+ .+..|+.-.+|  |+.+....++.......  .....++|.+  ..++.......++-.|+++.+....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~~~s~~~--~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGGFLSPDD--RALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTS--SEEEEEETTTEEEEEETTT--EEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccceEEecCC--CeEEEEECCCeEEEEECCcCcEEEE
Confidence            4677886554 44456665555  66555444443322211  1234455664  3555555567888889988776554


Q ss_pred             EcCCCCCeeEEEE--CCCCCEEEEEe---CC-------------------CeEEEEeCCCCceEEEecCCCeEEEEEEcC
Q 048118          165 LAGHTGYVNTVAV--SPDGSLCASGG---KD-------------------GVILLWDLAEGKRLYSLDAGAVIHALCFSP  220 (303)
Q Consensus       165 ~~~~~~~i~~~~~--~~~~~~l~~~~---~d-------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~  220 (303)
                      +.-....+-...|  +.++..++-.-   .|                   ..|.-.|+.+|+.-..+.....+.-+.|||
T Consensus       118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            5444444433444  44555543221   11                   244555666666554455567788899999


Q ss_pred             CC-eEEEEEc-------CCcEEEEeCCCC
Q 048118          221 NR-YWLCAAT-------EQSIKIWDLESK  241 (303)
Q Consensus       221 ~~-~~l~~~~-------~~~i~iwd~~~~  241 (303)
                      .. .+++.+.       |.+|++-|.+..
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            75 4556554       236666665543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.88  E-value=39  Score=32.62  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-----eEEEEcCCCCCe----------eEEEECCCCCEEEEEeCCC
Q 048118          127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-----LRATLAGHTGYV----------NTVAVSPDGSLCASGGKDG  191 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i----------~~~~~~~~~~~l~~~~~d~  191 (303)
                      +...++|+|... ..++.....|...||++....     .......+.+.+          ..+.|.++...|+++.. .
T Consensus       147 ~~aDv~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  147 PHADVAFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             ccceEEeccCcc-ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            456799999764 478899999999999992111     111111111222          25778887777777754 5


Q ss_pred             eEEEEeCCCCce---EEEecCCCeEEEEEEcCC--CeEEEEEcCCcEEEEeCCC
Q 048118          192 VILLWDLAEGKR---LYSLDAGAVIHALCFSPN--RYWLCAATEQSIKIWDLES  240 (303)
Q Consensus       192 ~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~i~iwd~~~  240 (303)
                      .+.++|+.+...   +........+.++.-+|.  +..+. -+...|...++..
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~Fi-LTs~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFI-LTSKEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEE-EecCeEEEEEccC
Confidence            788899987654   222233467888887777  33333 3446777777765

These proteins are found in fungi.

>PHA03098 kelch-like protein; Provisional

Probab=84.78  E-value=31  Score=31.49  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=26.5

Q ss_pred             CcEEEEECCCceeEEEEcCCCCC-eeEEEECCCCCEEEEEeCC--------CeEEEEeCCCCc
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGY-VNTVAVSPDGSLCASGGKD--------GVILLWDLAEGK  202 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~  202 (303)
                      ..+..||..+++....-...... -.++ ...++..++.|+.+        ..+.+||..+.+
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            45788998776543211100010 1111 22245666777643        237788887665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=84.58  E-value=33  Score=31.78  Aligned_cols=106  Identities=12%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             CCCEEEEEeCCCc-----EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC------CcEEEEECCCce
Q 048118           92 DNRQIVSASRDRT-----IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD------RTVKVWNLSNCK  160 (303)
Q Consensus        92 ~~~~l~t~~~d~~-----i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d------g~i~iwd~~~~~  160 (303)
                      +|...+.||.|+.     +-.||...+.................+.+.  +  ...+.||.+      .++..||..+++
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g--~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--G--KLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC--C--EEEEEcCcCCCccccceEEEEcCCCCc
Confidence            5667788888864     555666544332221111111111222222  1  245556644      357888887766


Q ss_pred             eEEE--EcCCCCCeeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCce
Q 048118          161 LRAT--LAGHTGYVNTVAVSPDGSLCASGGKDG-----VILLWDLAEGKR  203 (303)
Q Consensus       161 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~  203 (303)
                      ....  +........ ++. -++...+.|+.|+     +|..+|.++.+.
T Consensus       456 W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  456 WTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             eeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence            4322  111111122 222 2466778888776     366788776654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.48  E-value=37  Score=32.08  Aligned_cols=116  Identities=9%  Similarity=0.037  Sum_probs=64.8

Q ss_pred             CEEEEEEee--CCCEEEEEeCCCcEEEEecCC-------c---eee-----eee--cCCCCccceEEEEEcCCCCCCEEE
Q 048118           83 DVLSVAFSI--DNRQIVSASRDRTIKLWNTLG-------E---CKY-----TIQ--EGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        83 ~i~~i~~~~--~~~~l~t~~~d~~i~vw~~~~-------~---~~~-----~~~--~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                      .|+.|....  ..+.|+.|..||.|.+|....       .   ...     .+.  ..........+++++.......++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            455555543  456899999999999996410       0   000     000  000112245677777222234666


Q ss_pred             EEeCCCcEEEEECCC--ceeEE-EEcCCCCCeeEEEECCCC-----C-EEEEEeCCCeEEEEeC
Q 048118          144 SASWDRTVKVWNLSN--CKLRA-TLAGHTGYVNTVAVSPDG-----S-LCASGGKDGVILLWDL  198 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~--~~~~~-~~~~~~~~i~~~~~~~~~-----~-~l~~~~~d~~v~iwd~  198 (303)
                      +++....|.+|-...  .+... .-..+...|.+|+|-++.     . .+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            666667777764432  22111 111134567788886533     2 6777888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.29  E-value=29  Score=30.69  Aligned_cols=69  Identities=14%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE----EecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY----SLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~  238 (303)
                      .++|.+++||+|.+.||+--.|..|.+++....+...    +.+.+ ..|...+|+.. .-+|.-++..+.+|-.
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v  139 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQV  139 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEE
Confidence            5689999999999999999999999999985444322    22223 34888899865 4455555666777754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.23  E-value=27  Score=30.27  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             EEcCCCCCCEEEEEeCCCc--EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEe
Q 048118          132 RFSPNTLQPTIVSASWDRT--VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSL  207 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~  207 (303)
                      +|.+++. ..++++..+|.  +...|+.+++..+.-.+-........++|+++.++-......|+-.|+.+.+.  ++.+
T Consensus        42 ~ft~dG~-kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGR-KLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS--EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCC-EEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            3556653 34555666665  55558888876553332212233456778888776555567889999988754  4444


Q ss_pred             c
Q 048118          208 D  208 (303)
Q Consensus       208 ~  208 (303)
                      +
T Consensus       121 p  121 (386)
T PF14583_consen  121 P  121 (386)
T ss_dssp             -
T ss_pred             C
Confidence            3

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.39  E-value=40  Score=32.53  Aligned_cols=131  Identities=10%  Similarity=0.130  Sum_probs=73.3

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      +.-.|+|+|.....||.....|...+|++....+.............+.+   ...++     ..+.-..|.|.++...|
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~-----e~s~w~rI~W~~~~~~l  218 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPE-----ELSNWKRILWVSDSNRL  218 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCc-----ccCcceeeEecCCCCEE
Confidence            45578999987889999999999999999322211111111111111111   00000     11445578998888888


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      +.++. ..+.++|+.+...............|..++-+|.... .++.- ....|...++..
T Consensus       219 Lv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~-~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  219 LVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPS-HVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             EEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccc-eEEEE-ecCeEEEEEccC
Confidence            87766 4578888765433221111223456888887776322 22222 335666666655

These proteins are found in fungi.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.26  E-value=31  Score=30.25  Aligned_cols=199  Identities=14%  Similarity=0.129  Sum_probs=94.2

Q ss_pred             eeeeecCCCCCcEEEEecCCC----cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           18 VTAIATPIDNSDMIVTASRDK----SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      +....++|++..++++-+..|    +|++.|+..+.....    .       +           ..-  .-..+.|.+++
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~-------i-----------~~~--~~~~~~W~~d~  181 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----G-------I-----------ENP--KFSSVSWSDDG  181 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----E-------E-----------EEE--ESEEEEECTTS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----c-------c-----------ccc--ccceEEEeCCC
Confidence            335678887755555545544    488888875421100    0       0           000  01138899988


Q ss_pred             CEEEEEeCCC-----------cEEEEecCCceee--eeecCCCCccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECC
Q 048118           94 RQIVSASRDR-----------TIKLWNTLGECKY--TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLS  157 (303)
Q Consensus        94 ~~l~t~~~d~-----------~i~vw~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~  157 (303)
                      +.|+....+.           .|..|++......  .+............+..++++. ..++.....   ..+.+.|+.
T Consensus       182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~-~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR-YLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS-EEEEEEESSSSEEEEEEEECC
T ss_pred             CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc-EEEEEEEccccCCeEEEEecc
Confidence            7765554333           2566665432211  2222111122256677888763 344443333   357777887


Q ss_pred             Cc----eeEEEEcCCCCCe-eEEEECCCCCEEEEE---eCCCeEEEEeCCCCce---E-EEecCC--CeEEEEEEcCCCe
Q 048118          158 NC----KLRATLAGHTGYV-NTVAVSPDGSLCASG---GKDGVILLWDLAEGKR---L-YSLDAG--AVIHALCFSPNRY  223 (303)
Q Consensus       158 ~~----~~~~~~~~~~~~i-~~~~~~~~~~~l~~~---~~d~~v~iwd~~~~~~---~-~~~~~~--~~v~~~~~s~~~~  223 (303)
                      ..    .....+......+ ..+... .+.+++..   ...+.|...++.....   . ..+...  ..+..+....+..
T Consensus       261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L  339 (414)
T PF02897_consen  261 DGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL  339 (414)
T ss_dssp             CTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred             ccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence            64    2222333233333 334333 34344433   2346777778776542   1 112222  2456665554444


Q ss_pred             EEEEEcCC--cEEEEeCCCCc
Q 048118          224 WLCAATEQ--SIKIWDLESKS  242 (303)
Q Consensus       224 ~l~~~~~~--~i~iwd~~~~~  242 (303)
                      ++..-.++  .|+++++..+.
T Consensus       340 vl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  340 VLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEEEEETTEEEEEEEETT-TE
T ss_pred             EEEEEECCccEEEEEECCCCc
Confidence            44444443  68999988333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=82.84  E-value=5.7  Score=37.85  Aligned_cols=79  Identities=15%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             eeeecCC--CCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           19 TAIATPI--DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        19 ~~v~~~~--~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      -.|.|+|  .+.-++--+-.++++++..+.....      ..+.+|+.++.+.++-..+       -+.--..+|||..|
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------~l~rsHs~~~~d~a~~~~g-------~~~l~~lSpDGtv~  250 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR------SLFRSHSQRVTDMAFFAEG-------VLKLASLSPDGTVF  250 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH------HHHHhcCCCcccHHHHhhc-------hhhheeeCCCCcEE
Confidence            4455555  2234555555677888776653222      1122344433332221111       11112378999999


Q ss_pred             EEEeCCCcEEEEec
Q 048118           97 VSASRDRTIKLWNT  110 (303)
Q Consensus        97 ~t~~~d~~i~vw~~  110 (303)
                      ++.+.||.++.|.+
T Consensus       251 a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQI  264 (1283)
T ss_pred             EEeecCCccceeee
Confidence            99999999999975

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.35  E-value=49  Score=31.23  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE  200 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  200 (303)
                      -.|+||+.. |++...+....+++-.+.|+.+. .|++-..+|++.++++..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            458888874 44444444444577788998654 566777999999999864

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.16  E-value=42  Score=30.32  Aligned_cols=26  Identities=12%  Similarity=0.096  Sum_probs=21.6

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLW  108 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw  108 (303)
                      +|..+..++.|+.++-.|.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            57788899999999999999876654

>smart00564 PQQ beta-propeller repeat

Probab=80.95  E-value=5.7  Score=20.19  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=18.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCceEEE
Q 048118          183 LCASGGKDGVILLWDLAEGKRLYS  206 (303)
Q Consensus       183 ~l~~~~~d~~v~iwd~~~~~~~~~  206 (303)
                      .+..++.+|.+..+|..+|+.+.+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            466677788888888888776654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=80.80  E-value=43  Score=30.18  Aligned_cols=96  Identities=11%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC-------CEEEEEeCCCeEEEEeCC-CCceEEEecCCCe
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG-------SLCASGGKDGVILLWDLA-EGKRLYSLDAGAV  212 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~  212 (303)
                      .+..|+....++-.|+.-++.+.++.-|...  -+.+.|..       ..-++|-.+..|--.|.+ .|..+........
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence            4445666667777788888888777766543  45666642       122345455555555654 3444443332222


Q ss_pred             -----EEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118          213 -----IHALCFSPNRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       213 -----v~~~~~s~~~~~l~~~~~~~i~iwd~  238 (303)
                           ..+..-...|.+.+++..|.|++||.
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDR  590 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDR  590 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehh
Confidence                 23333334577778888899999995

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.28  E-value=7.1  Score=20.87  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             CCCCeeEEEECCCCCEEEEEeC-C--CeEEEE
Q 048118          168 HTGYVNTVAVSPDGSLCASGGK-D--GVILLW  196 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~-d--~~v~iw  196 (303)
                      .........|+|||+.|+-++. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4456778899999998866553 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-145
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-107
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-106
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-78
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-65
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-65
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-65
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-65
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-65
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-64
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-58
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-26
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-19
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-17
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-15
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		9e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-15
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-05
2h9l_A	329	Wdr5delta23 Length = 329		3e-15
2h9l_A	329	Wdr5delta23 Length = 329		1e-14
2h9l_A	329	Wdr5delta23 Length = 329		5e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-15
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-15
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-15
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-15
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-15
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-15
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-15
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-15
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-15
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-15
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-15
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-13
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		6e-13
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-13
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-13
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-12
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-11
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-11
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-11
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-11
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		7e-11
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-11
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		7e-11
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-10
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		8e-10
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-07
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-04
2vdu_B	450	Structure Of Trm8-Trm82, The Yeast Trna M7g Methyla		3e-04

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/325 (77%), Positives = 271/325 (83%), Gaps = 26/325 (8%)
Query: 4   GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS 63
           GLVLKGTMRAHTDMVTAIATPIDN+D+IV+ASRDKSII+W LTK++K YGVA+RRLTGHS
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 64  HFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQIVSA 99
           HFV+DVVLSSDGQF                        VGHTKDVLSVAFS+DNRQIVSA
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 100 SRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN 158
           SRDRTIKLWNTLGECKYTI EG + H +WVSCVRFSPNTLQPTIVSASWD+TVKVWNLSN
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCF 218
           CKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610
Query: 219 SPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLN 278
           SPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLN
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLN 669
Query: 279 WSVDGSTLFSGYTDGVIRVWGIGRY 303
           WS DGSTLFSGYTDGVIRVWGIGRY
Sbjct: 670 WSADGSTLFSGYTDGVIRVWGIGRY 694

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/324 (58%), Positives = 227/324 (70%), Gaps = 36/324 (11%)
Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           M E + L+GT++ H   VT IAT     DMI++ASRDK+II+W LT++E  YG+ +R L 
Sbjct: 24  MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 83
Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFV DVV+SSDGQF                        VGHTKDVLSVAFS DNRQI
Sbjct: 84  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+AL
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTS 276
           CFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTS
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----------CTS 311
Query: 277 LNWSVDGSTLFSGYTDGVIRVWGI 300
           L WS DG TLF+GYTD ++RVW +
Sbjct: 312 LAWSADGQTLFAGYTDNLVRVWQV 335

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/324 (58%), Positives = 227/324 (70%), Gaps = 36/324 (11%)
Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           M E + L+GT++ H   VT IAT     DMI++ASRDK+II+W LT++E  YG+ +R L 
Sbjct: 1   MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 61  GHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQI 96
           GHSHFV DVV+SSDGQF                        VGHTKDVLSVAFS DNRQI
Sbjct: 61  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL 156
           VS SRD+TIKLWNTLG CKYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+AL
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTS 276
           CFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTS
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----------CTS 288
Query: 277 LNWSVDGSTLFSGYTDGVIRVWGI 300
           L WS DG TLF+GYTD ++RVW +
Sbjct: 289 LAWSADGQTLFAGYTDNLVRVWQV 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  287 bits (734), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 153/326 (46%), Positives = 199/326 (61%), Gaps = 44/326 (13%)
Query: 5   LVLKGTMRAHTDMVTAIATP--IDNSDMIVTASRDKSIIVWHLTKE----EKTYGVARRR 58
           +  +G +  H   VT++A P   + +  +V+ SRDK+++ W    +    E +YG+  RR
Sbjct: 3   VAYEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRR 62
Query: 59  LTGHSHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNR 94
           L GHS FV DV LS++G                        +F+GHTKDVLSVAFS DNR
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 95  QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
           QIVS  RD  +++WN  GEC +T+  G AHT+WVSCVRFSP+   P IVS  WD  VKVW
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRG-AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           +L+  +L   L GHT YV +V VSPDGSLCAS  KDGV  LWDL +G+ L  + AGA I+
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
            +CFSPNRYW+CAATE+ I+I+DLE+K I+ +L  +                       C
Sbjct: 242 QICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE-------------C 288
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
            S+ WS DGSTL+SGYTD VIRVWG+
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVWGV 314

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 182/326 (55%), Gaps = 43/326 (13%)
Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GH
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
           SH VQD  L++DG                        +FVGH  DV+SV        I+S
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
            SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           NL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + 
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
           +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      + 
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
            SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 182/326 (55%), Gaps = 43/326 (13%)
Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GH
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
           SH VQD  L++DG                        +FVGH  DV+SV        I+S
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
            SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           NL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + 
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
           +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      + 
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
            SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 182/326 (55%), Gaps = 43/326 (13%)
Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GH
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
           SH VQD  L++DG                        +FVGH  DV+SV        I+S
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
            SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           NL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + 
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
           +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      + 
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
            SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score =  244 bits (624), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 181/324 (55%), Gaps = 43/324 (13%)
Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GH
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
           SH VQD  L++DG                        +FVGH  DV+SV        I+S
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
            SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           NL+  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + 
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
           +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      + 
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVW 298
            SL WS DG TLF+GYTD VIRVW
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score =  244 bits (622), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 181/324 (55%), Gaps = 43/324 (13%)
Query: 5   LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
           LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GHSH
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 65  FVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVSAS 100
            VQD  L++DG                        +FVGH  DV+SV        I+S S
Sbjct: 61  IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVWNL 156
           RD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK WNL
Sbjct: 121 RDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
           +  ++ A   GH   +NT+  SPDG+L AS GKDG I+LW+LA  K +Y+L A   + +L
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 237
Query: 217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTS 276
            FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      +  S
Sbjct: 238 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HAVS 285
Query: 277 LNWSVDGSTLFSGYTDGVIRVWGI 300
           L WS DG TLF+GYTD VIRVW +
Sbjct: 286 LAWSADGQTLFAGYTDNVIRVWQV 309

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score =  240 bits (613), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 179/326 (54%), Gaps = 43/326 (13%)
Query: 3   EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           E LVL+GT+  H   VT++AT     +++++ASRDK++I W LT +++ +GV  R   GH
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 63  SHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDNRQIVS 98
           SH VQD  L++DG                        +FVGH  DV SV        I+S
Sbjct: 65  SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 99  ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP----TIVSASWDRTVKVW 154
            SRD+TIK+W   G+C  T+     H +WVS VR  PN        TI+SA  D+ VK W
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           NL+  ++ A   GH   +NT+  SPDG+L AS GKDG I LW+LA  K  Y+L A   + 
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC 274
           +L FSPNRYWL AAT   IK++ L+ + +V+DL+ +                      + 
Sbjct: 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP------------HA 289
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
            SL WS DG TLF+GYTD VIRVW +
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 187/338 (55%), Gaps = 52/338 (15%)
Query: 5   LVLKGTMRAHTDMVTAIATPI-----DNSDMIVTASRDKSIIVWHLTKEEKT--YGVARR 57
           +V +G +  H+D VT+I         ++S ++++ SRDK++++W L +EE+   +G+  +
Sbjct: 11  VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK 70
Query: 58  RLTGHSHFVQDVVLSSDG------------------------QFVGHTKDVLSVAFSIDN 93
            LTGH+HFV D+ LS +                         +FVGH  +V SVAFS DN
Sbjct: 71  ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 94  RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-----NTLQ---PTIVSA 145
           RQI+SA  +R IKLWN LGECK++  E + H++WVSCVR+SP     N +Q   P   S 
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD---LAEGK 202
            WD  +KVWN +N ++R T   H   VN +++SP+G   A+GGKD  +L+WD   L   +
Sbjct: 191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 203 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXX 262
           R +  DAG+ I+ + F+P   W+   T+Q +KI++L ++S      ++            
Sbjct: 250 REF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIE-------AEPIT 300
Query: 263 XXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                   N  CTSL W+  G  LF+G+TDGVIR +  
Sbjct: 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 39/253 (15%)
Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
           T+  H+  V  +A   D    I +AS DK++ +W+        G   + LTGHS  V+ V
Sbjct: 339 TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVRGV 391
Query: 70  VLSSDGQ-----------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIK 106
             S DGQ                         GH+  V  VAFS D++ I SAS D+T+K
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166
           LWN  G+   T+     H+  V  V FSP+    TI SAS D+TVK+WN  N +L  TL 
Sbjct: 452 LWNRNGQLLQTLT---GHSSSVRGVAFSPDG--QTIASASDDKTVKLWN-RNGQLLQTLT 505
Query: 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWL 225
           GH+  V  VA SPDG   AS   D  + LW+   G+ L +L    + +  + FSP+   +
Sbjct: 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI 564
Query: 226 C-AATEQSIKIWD 237
             A++++++K+W+
Sbjct: 565 ASASSDKTVKLWN 577

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 131/315 (41%), Gaps = 75/315 (23%)
Query: 30  MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV----------- 78
           ++V+AS D +I VW     +   G   R L GH+  VQD+     G+ +           
Sbjct: 122 VMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176
Query: 79  -------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
                        GH  +V SV+   +   IVSASRD+TIK+W    +  Y ++    H 
Sbjct: 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHR 234
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD----- 180
           EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+     
Sbjct: 235 EWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 181 ---------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRY 223
                          G    SG +D  I +WD++ G  L +L      V   L  S  ++
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 224 WLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDG 283
            L  A ++++++WD ++K  ++ L                         + TSL++    
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTA 392
Query: 284 STLFSGYTDGVIRVW 298
             + +G  D  ++VW
Sbjct: 393 PYVVTGSVDQTVKVW 407

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 68/208 (32%)
Query: 78   VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD-----AHTEWVSCVR 132
            VGH K V  + F+ D + ++S+S D  I++WN         Q GD     AH E V   R
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW--------QTGDYVFLQAHQETVKDFR 1051
Query: 133  FSPNTLQPTIVSASWDRTVKVWNLSNCKLRA----------------------------- 163
               ++    ++S S+D TVKVWN+   ++                               
Sbjct: 1052 LLQDS---RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108
Query: 164  -------------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY----- 205
                          L GH G V   A S DG L A+G  +G I +W++++G+ L+     
Sbjct: 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168
Query: 206  SLDAGAVIHA-----LCFSPNRYWLCAA 228
            S++ G   H      +CFSP+   L +A
Sbjct: 1169 SVEEGTATHGGWVTDVCFSPDSKTLVSA 1196

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 68/208 (32%)
Query: 78   VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD-----AHTEWVSCVR 132
            VGH K V  + F+ D + ++S+S D  I++WN         Q GD     AH E V   R
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW--------QTGDYVFLQAHQETVKDFR 1058
Query: 133  FSPNTLQPTIVSASWDRTVKVWNLSNCKLRA----------------------------- 163
               ++    ++S S+D TVKVWN+   ++                               
Sbjct: 1059 LLQDS---RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1115
Query: 164  -------------TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY----- 205
                          L GH G V   A S DG L A+G  +G I +W++++G+ L+     
Sbjct: 1116 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1175
Query: 206  SLDAGAVIHA-----LCFSPNRYWLCAA 228
            S++ G   H      +CFSP+   L +A
Sbjct: 1176 SVEEGTATHGGWVTDVCFSPDSKTLVSA 1203

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 17  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 70  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 79  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 17  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 70  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 79  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 125/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + +  +S DK I +W         G   + ++GH  
Sbjct: 17  ALKFTLAGHTKAVSSVKFSP--NGEWLAASSADKLIKIWGAYD-----GKFEKTISGHKL 69
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 70  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 108
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 109 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 227 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + ++S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 79  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   A+   D +I +W   +GK   ++    + I  +
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 31  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 83
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 84  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 122
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 123 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 201 GKRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 241 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 92
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 93  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 252
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 29  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 130
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 131 NFN--PQSNLIVSGSFDESVRIWDV 153

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 14  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 66
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 67  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 105
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 106 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 224 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 75
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 76  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 235
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 113
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 114 NFN--PQSNLIVSGSFDESVRIWDV 136

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 15  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 67
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 68  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 106
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 107 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 225 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 76
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 77  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 236
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 13  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 114
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 115 NFN--PQSNLIVSGSFDESVRIWDV 137

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 13  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 65
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 66  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 104
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 105 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 223 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 74
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 75  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 234
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 112
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 113 NFN--PQSNLIVSGSFDESVRIWDV 135

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 14  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 66
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 67  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 105
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 106 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 201 GKRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 224 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 75
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 76  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 235
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 113
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 114 NFN--PQSNLIVSGSFDESVRIWDV 136

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 20  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 72
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 73  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 111
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 112 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 230 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 81
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 82  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 241
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 119
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 120 NFN--PQSNLIVSGSFDESVRIWDV 142

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 19  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 71
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 72  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 110
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 111 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 229 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 80
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 81  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 240
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 17  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 118
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 119 NFN--PQSNLIVSGSFDESVRIWDV 141

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 20  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 72
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 73  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 111
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 112 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 230 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 81
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 82  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 241
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 119
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 120 NFN--PQSNLIVSGSFDESVRIWDV 142

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 38  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 90
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 91  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 129
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 130 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 248 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 99
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 100 DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 259
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 36  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFC- 136
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
             N++   + + SG  D  +R+W +
Sbjct: 137 -CNFNPQSNLIVSGSFDESVRIWDV 160

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 20  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 72
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 73  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 111
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 112 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 230 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 81
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 82  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 241
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 119
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 120 NFN--PQSNLIVSGSFDESVRIWDV 142

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 82/293 (27%)
Query: 7   LKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHF 65
           LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH   
Sbjct: 11  LKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLG 63
Query: 66  VQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAH 124
           + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    H
Sbjct: 64  ISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---GH 102
Query: 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 184
           + +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL 
Sbjct: 103 SNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 160
Query: 185 ASGGKDGV-------------------------------------------ILLWDLAEG 201
            S   DG+                                           + LWD ++G
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220
Query: 202 KRLYSLDAGAVIHALCFSPNR-----YWLCAATEQS-IKIWDLESKSIVEDLK 248
           K L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 221 KCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 71
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 72  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 231
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 8   NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 109
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 110 NFN--PQSNLIVSGSFDESVRIWDV 132

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 82/294 (27%)
Query: 6   VLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            LK T+  HT  V+++  +P  N + + ++S DK I +W         G   + ++GH  
Sbjct: 36  ALKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKL 88
Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDA 123
            + DV  SSD                     +VSAS D+T+K+W+ + G+C  T++    
Sbjct: 89  GISDVAWSSDSNL------------------LVSASDDKTLKIWDVSSGKCLKTLK---G 127
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL 183
           H+ +V C  F+P +    IVS S+D +V++W++   K   TL  H+  V+ V  + DGSL
Sbjct: 128 HSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 184 CASGGKDGV-------------------------------------------ILLWDLAE 200
             S   DG+                                           + LWD ++
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 201 GKRLYSLDAGAVIHALCFSPN-----RYWLCAATEQS-IKIWDLESKSIVEDLK 248
           GK L +   G      C   N       W+ + +E + + IW+L++K IV+ L+
Sbjct: 246 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 97
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 98  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 257
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L+ TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 34  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 135
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 136 NFN--PQSNLIVSGSFDESVRIWDV 158

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 112/271 (41%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 79  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  + ++K+WD      ++                         
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L  TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 111/271 (40%), Gaps = 70/271 (25%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GHTK V SV FS +   + S+S D+ IK+W    G+ + TI     H   +S V +S 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSS 78
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---------------- 179
           ++    +VSAS D+T+K+W++S+ K   TL GH+ YV     +P                
Sbjct: 79  DS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 180 --------------------------DGSLCASGGKDGVILLWDLAEGKRLYSL--DAGA 211
                                     DGSL  S   DG+  +WD A G+ L +L  D   
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 212 VIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXX 270
            +  + FSPN +Y L A  +  +K+WD      ++                         
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK------------------TYTGHKN 238
Query: 271 NIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 300
             YC   N+SV G   + SG  D ++ +W +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHAL 216
           N  L  TLAGHT  V++V  SP+G   AS   D +I +W   +GK   ++    + I  +
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 217 CFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCT 275
            +S +   L +A+ ++++KIWD+ S   ++ LK                       ++C 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------------------GHSNYVFCC 116
Query: 276 SLNWSVDGSTLFSGYTDGVIRVWGI 300
           + N     + + SG  D  +R+W +
Sbjct: 117 NFN--PQSNLIVSGSFDESVRIWDV 139

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 31  IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS------HFVQDVVL--SSD-------- 74
           IV+  RD +I +W     +K     +R LTGH+       + + V++  SSD        
Sbjct: 146 IVSGLRDNTIKIW-----DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV 200
Query: 75  ------GQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEW 127
                    + H + VL + F  +N  +V+ S+DR+I +W+       T++     H   
Sbjct: 201 NTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG 187
           V+ V F        IVSAS DRT+KVWN S C+   TL GH   +  +       L  SG
Sbjct: 259 VNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG 312
Query: 188 GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDL 238
             D  I LWD+  G  L  L+    +       N+  +  A +  IK+WDL
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
Query: 89  FSIDNRQIVSASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
              D+++IVS  RD TIK+W  NTL ECK  +     HT  V C+++     +  I++ S
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILT---GHTGSVLCLQYD----ERVIITGS 190
Query: 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK---- 202
            D TV+VW+++  ++  TL  H   V  + +  +  +  +  KD  I +WD+A       
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 203 RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247
           R   +   A ++ + F  ++Y + A+ +++IK+W+  +   V  L
Sbjct: 249 RRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTL 292

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           + T+R H   + A+    D S ++V+AS+D  +I+W      K + +  R     S +V 
Sbjct: 59  RRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 112
Query: 68  DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
               +  G +V  G   ++ S+ +++  R+                G  + + +E   HT
Sbjct: 113 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 154
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
            ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  
Sbjct: 155 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 211
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
           SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   
Sbjct: 212 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
           +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct: 272 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 308

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           + T+R H   + A+    D S ++V+AS+D  +I+W      K + +  R     S +V 
Sbjct: 48  RRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68  DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
               +  G +V  G   ++ S+ +++  R+                G  + + +E   HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
            ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
           SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
           +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           + T+R H   + A+    D S ++V+AS+D  +I+W      K + +  R     S +V 
Sbjct: 48  RRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68  DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
               +  G +V  G   ++ S+ +++  R+                G  + + +E   HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
            ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
           SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
           +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 30/247 (12%)
Query: 6   VLKGTMRAHTDMVTAIA---TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH 62
           +L    +AH D + ++A      +NS+ +VT S D  + VW    E         RL   
Sbjct: 23  ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE---------RL--- 70
Query: 63  SHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD 122
                D+  S +G  +G    V+SV  S       S+S D  I+LW+   E    I+  D
Sbjct: 71  -----DLQWSLEGHQLG----VVSVDISHTLPIAASSSLDAHIRLWDL--ENGKQIKSID 119
Query: 123 AHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 182
           A       + FSP++    + + +    V ++ + + K   +L     ++ ++A SPDG 
Sbjct: 120 AGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 183 LCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATEQS-IKIWDLES 240
             ASG  DG+I ++D+A GK L++L+  A+ I +L FSP+   L  A++   IKI+D++ 
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 241 KSIVEDL 247
            ++   L
Sbjct: 238 ANLAGTL 244

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           + T+R H   + A+    D S ++++AS+D  +I+W      K + +  R     S +V 
Sbjct: 48  RRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68  DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
               +  G +V  G   ++ S+ +++  R+                G  + + +E   HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
            ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
           SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
           +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           + T+R H   + A+    D S ++++AS+D  +I+W      K + +  R     S +V 
Sbjct: 48  RRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVM 101
Query: 68  DVVLSSDGQFV--GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
               +  G +V  G   ++ S+ +++  R+                G  + + +E   HT
Sbjct: 102 TCAYAPSGNYVACGGLDNICSI-YNLKTRE----------------GNVRVS-RELAGHT 143
Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA 185
            ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  
Sbjct: 144 GYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 186 SGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSI 243
           SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 244 VEDLKVDLXXXXXXXXXXXXXXXXXXXNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 298
           +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct: 261 LMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 26/228 (11%)
Query: 27  NSDMIVTASRDKSIIVWHLTK--------EEKTYGVARRRLTGHSHFVQDVVLSSDGQFV 78
           N   IVT SRD ++ VW L K        EE  Y +       + +FV        G   
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--------GVLR 267
Query: 79  GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNT 137
           GH   V +V  S     +VS S D T+ +W+    +C Y +     HT+ +    +    
Sbjct: 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHE- 321
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
            +   +SAS D T+++W+L N +L  TL GHT  V  + +S       S   DG I  WD
Sbjct: 322 -RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
Query: 198 LAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245
             +  R +S     +     F  +   L + +E    I++L S  +V 
Sbjct: 379 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 26/228 (11%)
Query: 27  NSDMIVTASRDKSIIVWHLTK--------EEKTYGVARRRLTGHSHFVQDVVLSSDGQFV 78
           N   IVT SRD ++ VW L K        EE  Y +       + +FV        G   
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--------GVLR 267
Query: 79  GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNT 137
           GH   V +V  S     +VS S D T+ +W+    +C Y +     HT+ +    +    
Sbjct: 268 GHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILS---GHTDRIYSTIYDHE- 321
Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
            +   +SAS D T+++W+L N +L  TL GHT  V  + +S       S   DG I  WD
Sbjct: 322 -RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
Query: 198 LAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE 245
             +  R +S     +     F  +   L + +E    I++L S  +V 
Sbjct: 379 ANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
           F  H   + S+A       ++S S D T+KLWN   E  + +++  + H  +V CV F+P
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
                T  S   DRTVKVW+L       TL  G    VN V     PD     +   D  
Sbjct: 151 KD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
           I +WD      + +L+   + +    F P    + + +E  ++KIW+  +  + + L V 
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
           L
Sbjct: 270 L 270

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
           F  H   + S+A       ++S S D T+KLWN   E  + +++  + H  +V CV F+P
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
                T  S   DRTVKVW+L       TL  G    VN V     PD     +   D  
Sbjct: 151 KD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
           I +WD      + +L+   + +    F P    + + +E  ++KIW+  +  + + L V 
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
           L
Sbjct: 270 L 270

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
           F  H   + S+A       ++S S D T+KLWN   E  + +++  + H  +V CV F+P
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
                T  S   DRTVKVW+L       TL  G    VN V     PD     +   D  
Sbjct: 151 KDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
           I +WD      + +L+   + +    F P    + + +E  ++KIW+  +  + + L V 
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
           L
Sbjct: 270 L 270

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSP 135
           F  H   + S+A       ++S S D T+KLWN   E  + +++  + H  +V CV F+P
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN--WENNWALEQTFEGHEHFVMCVAFNP 150
Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVS--PDGSLCASGGKDGV 192
                T  S   DRTVKVW+L       TL  G    VN V     PD     +   D  
Sbjct: 151 KDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 193 ILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVD 250
           I +WD      + +L+   + +    F P    + + +E  ++KIW+  +  + + L V 
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Query: 251 L 251
           L
Sbjct: 270 L 270

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 35/232 (15%)
Query: 71  LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVS 129
           L S     GH   V++      NR IVS S D T+K+W+ + G+C  T+  G     W S
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSS 165
Query: 130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK 189
            +R         I+S S DRT+KVWN    +   TL GHT  V  + +        SG +
Sbjct: 166 QMR------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 217
Query: 190 DGVILLWDLAEGKRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLK 248
           D  + +WD+  G+ L+ L  G V    C   + R  +  A +  +K+WD E+++ +  L+
Sbjct: 218 DATLRVWDIETGQCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 249 VDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                                  +Y  SL +  DG  + SG  D  IRVW +
Sbjct: 277 ------------------GHTNRVY--SLQF--DGIHVVSGSLDTSIRVWDV 306

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 31  IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
           +++AS D +I +W +    K + V                + +   F GHT  V  VA+ 
Sbjct: 201 LLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVVEDVAWH 244
Query: 91  IDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
           + +  +  S + D+ + +W    N   +  +T+   DAHT  V+C+ F+P + +  + + 
Sbjct: 245 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYS-EFILATG 300
Query: 146 SWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE-GK 202
           S D+TV +W+L N KL+  +   H   +  V  SP + ++ AS G D  + +WDL++ G+
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 360
Query: 203 RLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
              + DA               A I    ++PN  W +C+ +E +I ++W +
Sbjct: 361 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 31  IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
           +++AS D +I +W +    K + V                + +   F GHT  V  VA+ 
Sbjct: 197 LLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVVEDVAWH 240
Query: 91  IDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
           + +  +  S + D+ + +W    N   +  +T+   DAHT  V+C+ F+P + +  + + 
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYS-EFILATG 296
Query: 146 SWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE-GK 202
           S D+TV +W+L N KL+  +   H   +  V  SP + ++ AS G D  + +WDL++ G+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356
Query: 203 RLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
              + DA               A I    ++PN  W +C+ +E +I ++W +
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 44/232 (18%)
Query: 31  IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS 90
           +++AS D +I +W +    K + V                + +   F GHT  V  VA+ 
Sbjct: 199 LLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVVEDVAWH 242
Query: 91  IDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
           + +  +  S + D+ + +W    N   +  +T+   DAHT  V+C+ F+P + +  + + 
Sbjct: 243 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYS-EFILATG 298
Query: 146 SWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAE-GK 202
           S D+TV +W+L N KL+  +   H   +  V  SP + ++ AS G D  + +WDL++ G+
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 358
Query: 203 RLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
              + DA               A I    ++PN  W +C+ +E +I ++W +
Sbjct: 359 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 35/206 (16%)
Query: 128 VSCVRFSPNTLQP-TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
           ++ V F P+  +P  I+S S D TV ++     K ++T   HT +V++V  +PDGSL AS
Sbjct: 150 MNSVDFKPS--RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 207
Query: 187 GGKDGVILLWDLAEGKR--------LYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWD 237
            G DG I+L++  +G +        L ++     +  L +SP+   + +A+ +++IKIW+
Sbjct: 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Query: 238 LESKSI---------VEDLKVDLXXXXXXXXXXXXXXXXXXXNI--------------YC 274
           + +  +         +ED ++ +                   N                 
Sbjct: 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327
Query: 275 TSLNWSVDGSTLFSGYTDGVIRVWGI 300
           T+L+ S DG TLFS   +G I  W I
Sbjct: 328 TALSSSADGKTLFSADAEGHINSWDI 353

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 48/237 (20%)
Query: 28  SDMIVTASRDKSIIVWHLTKEEKTYGV--ARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85
           S  +++AS D ++ +W +    K   +  A+   TGHS  V+DV                
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV---------------- 235
Query: 86  SVAFSIDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP 140
             A+ + +  +  S + D+ + +W    NT  +  + +   DAHT  V+C+ F+P + + 
Sbjct: 236 --AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLV---DAHTAEVNCLSFNPYS-EF 289
Query: 141 TIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDL 198
            + + S D+TV +W+L N KL+  T   H   +  V  SP + ++ AS G D  + +WDL
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 199 AE-GKRLYSLDAG--------------AVIHALCFSPNRYW-LCAATEQSI-KIWDL 238
           ++ G+   + DA               A I    ++PN  W +C+ +E +I +IW +
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 52/271 (19%)
Query: 75  GQFV--------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT- 125
           GQFV        GH   VL + +  D R+IVS+S+D  + +W++     +T  +  A T 
Sbjct: 50  GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-----FTTNKEHAVTM 104
Query: 126 --EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------LRATLAGHTGYVNTVAV 177
              WV    ++P+     I     D    V+ L+  K       + ++A HT Y++  + 
Sbjct: 105 PCTWVMACAYAPSGC--AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162
Query: 178 SPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNR---YWLCAATEQSI 233
           +       +   DG   LWD+  G+ L S    GA +  L  +P+     ++    ++  
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 234 KIWDLESKSIVEDLK-----VDLXXXXXXXXXXXXXXXXXXXNIY--------------- 273
            +WD+ S   V+  +     V+                     +Y               
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 274 ----CTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                +S+++S+ G  LF+GY D  I VW +
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 48/252 (19%)
Query: 11  MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGV--ARRRLTGHSHFVQD 68
           +R H      ++   + S  +++AS D ++ +W +    K   +  A+   TGHS  V+D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 69  VVLSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLW----NTLGECKYTIQEGDA 123
           V                  A+ + +  +  S + D+ + +W    NT  +  + +   DA
Sbjct: 235 V------------------AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLV---DA 273
Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DG 181
           HT  V+C+ F+P + +  + + S D+TV +W+L N KL+  T   H   +  V  SP + 
Sbjct: 274 HTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 182 SLCASGGKDGVILLWDLAE-GKRLYSLDAG--------------AVIHALCFSPNRYW-L 225
           ++ AS G D  + +WDL++ G+   + DA               A I    ++PN  W +
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 226 CAATEQSI-KIW 236
           C+ +E +I +IW
Sbjct: 393 CSVSEDNIXQIW 404

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 135/343 (39%), Gaps = 72/343 (20%)
Query: 5   LVLKGTMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHS 63
           LV   T++ H+  V ++  TP  N   IV+AS+D  +IVW+    +KT+ +       H 
Sbjct: 56  LVCCRTLQGHSGKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKL-----HC 108
Query: 64  HFVQDVVLSSDGQFV-------------------------------GHTKDVLSVAFSID 92
            +V +   + +GQ V                               GH     S  +  D
Sbjct: 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 93  NR-QIVSASRDRTIKLWNTLGECKYTI---QEGDAHTEWVSCVRFSPNTLQPTI-VSASW 147
              ++++ S D+T  LW+     + +I   +    HT  V  +  S N+L   + +S S 
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV--LSLSINSLNANMFISGSC 226
Query: 148 DRTVKVWNLS-NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL-- 204
           D TV++W+L    +   T  GH G +N+V   PDG    +G  DG   L+D+  G +L  
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 205 YSLDAG------AVIHALCFS-PNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXX 257
           Y+ +         ++ ++ FS   R      +     +WD     +V +L          
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-------- 338
Query: 258 XXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                         I C  L  S DGS L +G  D  +++W  
Sbjct: 339 ------LQNSHEGRISCLGL--SSDGSALCTGSWDKNLKIWAF 373

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 38/249 (15%)
Query: 11  MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV 70
           +R H      ++   + S  +++AS D +I +W ++   K   V   +            
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTI---------- 222
Query: 71  LSSDGQFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEG-DAHTEWV 128
                 F GHT  V  V++ + +  +  S + D+ + +W+T            DAHT  V
Sbjct: 223 ------FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEV 276
Query: 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAGHTGYVNTVAVSP-DGSLCAS 186
           +C+ F+P + +  + + S D+TV +W+L N KL+  +   H   +  V  SP + ++ AS
Sbjct: 277 NCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 187 GGKDGVILLWDLAE-GKRLYSLDAG--------------AVIHALCFSPNRYW-LCAATE 230
            G D  + +WDL++ G+     DA               A I    ++PN  W +C+ +E
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 395
Query: 231 QSI-KIWDL 238
            +I ++W +
Sbjct: 396 DNIMQVWQM 404

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
           ++  V FSP+     + + + DR +++W++ N K+   L GH   + ++   P G    S
Sbjct: 125 YIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 187 GGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIV 244
           G  D  + +WDL  G+     S++ G    A+     +Y    + ++++++WD E+  +V
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 245 EDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
           E L  +                    ++Y  S+ ++ DG ++ SG  D  +++W +
Sbjct: 243 ERLDSE-----------NESGTGHKDSVY--SVVFTRDGQSVVSGSLDRSVKLWNL 285

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 33/225 (14%)
Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
           M + LVL G + AH D             ++ +   D+ I +W    E  ++        
Sbjct: 1   MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW--GTEGDSWICKSVLSE 58
Query: 61  GHSHFVQDVVLSSDGQFV--------------------------GHTKDVLSVAFSIDNR 94
           GH   V+ V  S  G ++                          GH  +V SVA++    
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 95  QIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV 153
            + + SRD+++ +W    E +Y  +   ++HT+ V  V + P+  Q  + SAS+D TVK+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS--QELLASASYDDTVKL 176
Query: 154 W--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
           +     +    ATL GH   V ++A  P G   AS   D  + +W
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 96  IVSASRDRTIKLWNTLGE---CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK 152
           + S   DR I++W T G+   CK  + EG  H   V  V +SP      + SAS+D T  
Sbjct: 31  LASCGGDRRIRIWGTEGDSWICKSVLSEG--HQRTVRKVAWSP--CGNYLASASFDATTC 86
Query: 153 VW--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE 200
           +W  N  + +   TL GH   V +VA +P G+L A+  +D  + +W++ E
Sbjct: 87  IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 207
           D  + VW+L N  L     GHT   + + +S DG+   +GG D  +  WDL EG++L   
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 208 DAGAVIHALCFSPNRYWLCAATEQS 232
           D  + I +L + P   WL    E S
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESS 246

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 56  RRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV-AFSIDNRQIVSASRDRTIKLWNTLGEC 114
           + RL GH      ++   DG  +    D  +V    +  R+ +  + +  IK+ ++    
Sbjct: 70  KARLDGHDFLFNTII--RDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 127
Query: 115 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174
           +  I +  AH   ++ ++F P+     ++S+S D  +K+W++ +     TL GH   V  
Sbjct: 128 QREIDQ--AHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           +A+   G    S   DG I LW+   G  +++ +     H
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 223

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 56  RRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV-AFSIDNRQIVSASRDRTIKLWNTLGEC 114
           + RL GH      ++   DG  +    D  +V    +  R+ +  + +  IK+ ++    
Sbjct: 73  KARLDGHDFLFNTII--RDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130
Query: 115 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174
           +  I +  AH   ++ ++F P+     ++S+S D  +K+W++ +     TL GH   V  
Sbjct: 131 QREIDQ--AHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
           +A+   G    S   DG I LW+   G  +++ +     H
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 226

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 15/166 (9%)
Query: 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 201
           + S S D +  VW   N +   TL GHTG + ++ V      C +G  D  I LWD++ G
Sbjct: 47  LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106
Query: 202 KRLYSLDAGAVIHALCFSP-NRYWLC-----AATEQSIKIWDLESKSIVEDL-KVDLXXX 254
           + + +  +   +  + FSP   Y+L           SI I+++E  S   +L KV     
Sbjct: 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166
Query: 255 XXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                               T   WS  G  + +G+ DG I  + +
Sbjct: 167 HKIITHEGLDA--------ATVAGWSTKGKYIIAGHKDGKISKYDV 204

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVS---ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVR 132
           F  H   V +VA+      +++    + DR I++WN   G C   +   DAH++ V  + 
Sbjct: 192 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQ-VCSIL 247
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
           +SP+  +           + +W        A L GHT  V ++ +SPDG+  AS   D  
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307
Query: 193 ILLWDLAEGKRLYSLD 208
           + LW      R + LD
Sbjct: 308 LRLW------RCFELD 317

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVS---ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVR 132
           F  H   V +VA+      +++    + DR I++WN   G C   +   DAH++ V  + 
Sbjct: 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQ-VCSIL 327
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
           +SP+  +           + +W        A L GHT  V ++ +SPDG+  AS   D  
Sbjct: 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 193 ILLWDLAEGKRLYSLD 208
           + LW      R + LD
Sbjct: 388 LRLW------RCFELD 397

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 77  FVGHTKDVLSVAFSIDNRQIVS---ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVR 132
           F  H   V +VA+      +++    + DR I++WN   G C   +   DAH++ V  + 
Sbjct: 283 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DAHSQ-VCSIL 338
Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
           +SP+  +           + +W        A L GHT  V ++ +SPDG+  AS   D  
Sbjct: 339 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 193 ILLWDLAEGKRLYSLD 208
           + LW      R + LD
Sbjct: 399 LRLW------RCFELD 408

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 91  IDNRQIVSASRDRTIKLWNTLGE-----CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
           +  + I+ AS    ++LW  L +      K+   E D   + +S   FS  T     VS 
Sbjct: 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV--FSDGT---QAVSG 157
Query: 146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRL 204
             D +VKVW+LS   +  +   H+  VN VA  P   ++  S G+DG ILLWD  + K  
Sbjct: 158 GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217
Query: 205 YSLD 208
             +D
Sbjct: 218 TRID 221

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 79  GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-----LGECKYTIQEGDAHTEWVSCVRF 133
           GH  +V  VA+S D   + + SRD+++ +W T       EC   +QE   H++ V  V +
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIW 161
Query: 134 SPNTLQPTIVSASWDRTVKVWN--LSNCKLRATLAGHTGYVNTVAVSPDGS---LCASGG 188
            P+  +  + S+S+D TV++W     + +  A L GH G V +           LC SG 
Sbjct: 162 HPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC-SGS 218
Query: 189 KDGVILLW 196
            D  + +W
Sbjct: 219 DDSTVRVW 226

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 80  HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTE---WVSCVRFSPN 136
           HT  VL V +S D  ++ +AS D+T K+W+        I + DA  +   W+    +S  
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS-- 142
Query: 137 TLQPTIVSASWDRTVKVWN 155
                +++ SWD+T+K W+
Sbjct: 143 ----CVMTGSWDKTLKFWD 157

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 128 VSCVRFSPNTLQPT-IVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGSLC 184
           + C+ FSP TL    +++ SW   V+ W +  S   +      HTG V  V  S DGS  
Sbjct: 42  IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 185 ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT---EQSIKIWDLESK 241
            +   D    +WDL+  + +      A +  + +     + C  T   ++++K WD  S 
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161
Query: 242 SIVEDLKV 249
           + +  L++
Sbjct: 162 NPMMVLQL 169

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 32/157 (20%)
Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQD 68
            ++AH   V        + +  +TAS DK+I +W   K  KT+ G+       H+  V+ 
Sbjct: 137 NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI-------HNDVVRH 189
Query: 69  VVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV 128
           + +  DG F+                   S S D  IKL +        ++  + H  +V
Sbjct: 190 LAVVDDGHFI-------------------SCSNDGLIKLVDX--HTGDVLRTYEGHESFV 228
Query: 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165
            C++  PN     IVS   DRTV++W+  N  L+  +
Sbjct: 229 YCIKLLPN---GDIVSCGEDRTVRIWSKENGSLKQVI 262

>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation Complex Length = 450

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 26  DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85
           D S +I  A  DKS++V+ + K  K     R+R    S     + ++ D   V    D  
Sbjct: 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC-FSKRPNAISIAEDDTTVI-IADKF 170
Query: 86  SVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL-QPTIVS 144
              +SID                N++ E K+T +    H   ++ V    ++     I++
Sbjct: 171 GDVYSID---------------INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT 215
Query: 145 ASWDRTVKVWNLSNCKLRAT-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 203
           +  D  +K+ +   C +    L GH  +V+++    D  L ++GG D  I  WD   GK 
Sbjct: 216 SDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDK-IFAWDWKTGKN 274
Query: 204 LYSLDAGAVIHALC----FSPNRY 223
           L + D  ++I         +P R+
Sbjct: 275 LSTFDYNSLIKPYLNDQHLAPPRF 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.8
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.48
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.45
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.31
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.3
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.28
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.23
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.22
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.18
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.15
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.13
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.88
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.88
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.86
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.77
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.71
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.63
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.61
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.57
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.55
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.49
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.28
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.27
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.11
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.99
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.96
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.9
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.88
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.74
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.74
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.67
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.62
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.59
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.45
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.44
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.41
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.33
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.3
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.3
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.22
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.08
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.0
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.0
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.9
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.87
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.87
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.86
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.83
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.36
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.33
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.21
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.65
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.58
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.54
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.23
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.7
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.27
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.06
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.35
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.22
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.74
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.5
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.45
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.3
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.37
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.17
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.86
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.57
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.54
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	86.77
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.44
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	84.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	82.36
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	80.53

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-45  Score=311.51  Aligned_cols=289  Identities=66%  Similarity=1.158  Sum_probs=247.7

Q ss_pred             CccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee--
Q 048118            1 MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV--   78 (303)
Q Consensus         1 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--   78 (303)
                      |.+++.++++|+||.+.|++|+|+|+++++|+|||.|++|++||+...+.....+...+.+|...|.++.++|++++.  
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            568889999999999999999999987789999999999999999876655566777888999999999999987532  


Q ss_pred             ----------------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118           79 ----------------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        79 ----------------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~  136 (303)
                                            .+...+..+.+++++.++++++.|+.+++||........ .....|...+.+++|+++
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECSSSCSSCEEEEEECSC
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEeccccCcccceEEccC
Confidence                                  456678888999999999999999999999986554333 333567888999999998


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEE
Q 048118          137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL  216 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~  216 (303)
                      .....+++++.|+.|++||+++++....+.+|.+.|++++|+|++++|++|+.|++|++||+++.+.+..+.....+.++
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~  262 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL  262 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEee
Confidence            76678899999999999999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             EEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          217 CFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       217 ~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      +|+|++.+++++.|+.|++||++++..+..++....           ......+...+++++|+|++++|++|+.||.|+
T Consensus       263 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~  331 (340)
T 4aow_A          263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI-----------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR  331 (340)
T ss_dssp             EECSSSSEEEEEETTEEEEEETTTTEEEEEECCC------------------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecCCCCceeeccCCCEEEEEECCCCeEEEeccccce-----------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            999999999999999999999998877765542211           112334566788999999999999999999999


Q ss_pred             EEecc
Q 048118          297 VWGIG  301 (303)
Q Consensus       297 ~w~~~  301 (303)
                      +||+.
T Consensus       332 iW~~~  336 (340)
T 4aow_A          332 VWQVT  336 (340)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            99985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.4e-45  Score=305.14  Aligned_cols=284  Identities=47%  Similarity=0.834  Sum_probs=242.4

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc------
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------   76 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------   76 (303)
                      +-+.+.+++++|.+.|++++|+|+++++|+||+.|++|++|++.......+.+...+.+|...|.++.+++++.      
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            34678889999999999999999877899999999999999997655555566778889999999999998764      


Q ss_pred             ------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC
Q 048118           77 ------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL  138 (303)
Q Consensus        77 ------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  138 (303)
                                        +.+|.+.|.+++|+|++.++++++.|+.|++||..+......   ..|...+.++++.|...
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~---~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL---LGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE---CCCSSCEEEEEECCC--
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE---eccCCcEEEEEEccCCC
Confidence                              348999999999999999999999999999999876543332   46788899999998532


Q ss_pred             ----CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEE
Q 048118          139 ----QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH  214 (303)
Q Consensus       139 ----~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~  214 (303)
                          ...+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.||+|++||+++++.+..+.....+.
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~  241 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF  241 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEE
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEE
Confidence                2379999999999999999999888999999999999999999999999999999999999999998888888999


Q ss_pred             EEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118          215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       215 ~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      +++|+|++.+++++.++.+++|+++.+..+..+......            ....+...+.+++|+|+|++|++|+.||.
T Consensus       242 ~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG------------YSKAAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTT------------CCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccc------------cccCcCcceeEEEECCCCCEEEEeecCce
Confidence            999999999999999899999999887766554321110            01123345678999999999999999999


Q ss_pred             EEEEecc
Q 048118          295 IRVWGIG  301 (303)
Q Consensus       295 v~~w~~~  301 (303)
                      |++||+.
T Consensus       310 i~vWd~~  316 (319)
T 3frx_A          310 IRVWQVM  316 (319)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-45  Score=339.55  Aligned_cols=300  Identities=86%  Similarity=1.388  Sum_probs=249.1

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc------
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ------   76 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------   76 (303)
                      ..+.+.+.+++|.+.|++++++|++.++|+|||.|++|++|++.......+.....+.+|...|.++.++++++      
T Consensus       370 ~~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          370 AGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             CSSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            34667788999999999999999888899999999999999998765555566777889999999999998864      


Q ss_pred             ------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCC
Q 048118           77 ------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNT  137 (303)
Q Consensus        77 ------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~  137 (303)
                                        +.+|.+.|.+++|+|++.+|++++.|+.|++||........+. ....|...|.+++|+|++
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence                              3489999999999999999999999999999998665544332 234678889999999987


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEE
Q 048118          138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC  217 (303)
Q Consensus       138 ~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  217 (303)
                      ....+++++.|+.|++||+++.++...+.+|.+.|++++|+|++++|++++.||+|++||+++++.+..+.....+.+++
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  609 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC  609 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE
Confidence            55689999999999999999999999999999999999999999999999999999999999999998888888999999


Q ss_pred             EcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          218 FSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       218 ~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      |+|++.+++++.++.|++||+++++.+..+............... ......+..++++++|+|++++|++|+.||+|++
T Consensus       610 ~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          610 FSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG-PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV  688 (694)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccc-cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence            999999999999999999999999888777654332211111100 1112233456789999999999999999999999


Q ss_pred             EecccC
Q 048118          298 WGIGRY  303 (303)
Q Consensus       298 w~~~~~  303 (303)
                      |++++|
T Consensus       689 W~i~~~  694 (694)
T 3dm0_A          689 WGIGRY  694 (694)
T ss_dssp             EEC---
T ss_pred             EeccCC
Confidence            999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.3e-43  Score=296.71  Aligned_cols=292  Identities=42%  Similarity=0.789  Sum_probs=232.2

Q ss_pred             ccceeecccccccccceeeeec-----CCCCCcEEEEecCCCcEEEEEcccCcc--ccceeeeeecCCCcceEEEEeCCC
Q 048118            2 AEGLVLKGTMRAHTDMVTAIAT-----PIDNSDMIVTASRDKSIIVWHLTKEEK--TYGVARRRLTGHSHFVQDVVLSSD   74 (303)
Q Consensus         2 ~~~~~~~~~~~~h~~~v~~v~~-----~~~~~~~~~t~s~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~   74 (303)
                      ..++.+...+++|.+.|++++|     ++.++.+|+||+.|++|++|++...+.  ..+.+...+.+|...|.++.++++
T Consensus         8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R            8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            3456677889999999999998     664567999999999999999875432  124456678899999999999887


Q ss_pred             Cc------------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEE
Q 048118           75 GQ------------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSC  130 (303)
Q Consensus        75 ~~------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~  130 (303)
                      +.                        +.+|.+.|.+++|+|++.+|++++.|+.|++||+.............|...|.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            63                        347999999999999999999999999999999875544433334467888999


Q ss_pred             EEEcCCCC--------CCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CC
Q 048118          131 VRFSPNTL--------QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EG  201 (303)
Q Consensus       131 ~~~~~~~~--------~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~  201 (303)
                      ++|+|+..        ...+++++.|+.|++||. ..+....+.+|...|.+++|+|++++|++|+.|++|++||++ ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999752        147999999999999994 566677888999999999999999999999999999999995 34


Q ss_pred             ceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC
Q 048118          202 KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV  281 (303)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  281 (303)
                      .....+.....+.+++|+|++.+++++.++.|++||+.+++......+.....       .......++...+.+++|+|
T Consensus       247 ~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp  319 (343)
T 2xzm_R          247 YPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPI-------TKAEGQKGKNPQCTSLAWNA  319 (343)
T ss_dssp             SCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSG-------GGBTTBCCSCCCEEEEEECS
T ss_pred             ccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcc-------hhhhhhcCCCCceEEEEECC
Confidence            44445555677999999999999999999999999998765443111110000       00011224555688999999


Q ss_pred             CCCEEEEeecCCeEEEEecc
Q 048118          282 DGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       282 ~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++++|++|+.||.|++|++.
T Consensus       320 ~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          320 LGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             SSCCEEEEETTSEEEEEEEE
T ss_pred             CCCeEEEecCCceEEEEEEE
Confidence            99999999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-41  Score=286.95  Aligned_cols=266  Identities=26%  Similarity=0.369  Sum_probs=219.9

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------   76 (303)
                      ...+++++|.+.|++++|+|++ .+|+|||.|++|++||......     ...+..+...+..+.++|++.         
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg~~d~  128 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACGGLDN  128 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred             EEEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence            3456789999999999999875 6899999999999999765432     233445666777777777653         


Q ss_pred             ---------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcC
Q 048118           77 ---------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP  135 (303)
Q Consensus        77 ---------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~  135 (303)
                                           +.+|.+.|.+++|+|++..+++++.|+.|++||+......  .....|...|.+++|+|
T Consensus       129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL--QSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECC
T ss_pred             CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEcCCCCCeEEEEEEe
Confidence                                 3368899999999999999999999999999998654322  22245778899999998


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCe
Q 048118          136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAV  212 (303)
Q Consensus       136 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~  212 (303)
                      +.....+++|+.|+.|++||++++++...+.+|...|++++|+|++++|++++.|++|++||++.++.+..+..   ...
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG  286 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence            65446899999999999999999999999999999999999999999999999999999999998877666543   246


Q ss_pred             EEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          213 IHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       213 v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      +.+++|+|++.++++ +.|+.|++||+.+++.+..                    +.+|...+.+++|+|++++|++|+.
T Consensus       287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--------------------l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI--------------------LFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--------------------ECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE--------------------EECCCCcEEEEEECCCCCEEEEEcC
Confidence            889999999876655 5689999999988765543                    2345556789999999999999999


Q ss_pred             CCeEEEEe
Q 048118          292 DGVIRVWG  299 (303)
Q Consensus       292 Dg~v~~w~  299 (303)
                      ||+|++|+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.2e-41  Score=284.15  Aligned_cols=263  Identities=24%  Similarity=0.403  Sum_probs=220.3

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------   76 (303)
                      ....++++|.+.|++++|+|++ ++|+||+.|++|++||.....     ....+..|...+..+.++|++.         
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  119 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred             hhheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence            3456789999999999999875 689999999999999986543     2344566777888888887653         


Q ss_pred             -------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC
Q 048118           77 -------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT  137 (303)
Q Consensus        77 -------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  137 (303)
                                         +.+|.+.|.++.|++++. +++++.|+.|++||+......  .....|...|.+++|+|++
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE--EEEcCCCCceEEEEECCCC
Confidence                               347889999999998875 889999999999998654332  2234688889999999986


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC---CeEE
Q 048118          138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG---AVIH  214 (303)
Q Consensus       138 ~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~  214 (303)
                        ..+++|+.|+.|++||++++++...+.+|...|++++|+|++++|++|+.|++|++||+++++.+..+...   ..+.
T Consensus       197 --~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          197 --RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             --SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             --CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence              58999999999999999999999999999999999999999999999999999999999998887776543   3699


Q ss_pred             EEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          215 ALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       215 ~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      +++|+|++.+++ ++.|+.|++||+.+++.+..+                    .+|...+.+++|+|++.+|++|+.||
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------------------~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------------------AGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--------------------ecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            999999987665 456899999999887655433                    34555678899999999999999999


Q ss_pred             eEEEEe
Q 048118          294 VIRVWG  299 (303)
Q Consensus       294 ~v~~w~  299 (303)
                      +|++||
T Consensus       335 ~i~iWd  340 (340)
T 1got_B          335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             cEEecC
Confidence            999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.1e-41  Score=281.07  Aligned_cols=266  Identities=21%  Similarity=0.354  Sum_probs=219.0

Q ss_pred             cccccccccceeeeecCCC---CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------
Q 048118            8 KGTMRAHTDMVTAIATPID---NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------   76 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~---~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------   76 (303)
                      ...+++|.+.|++++|+|+   +.++|+|||.|++|++|++.....   .....+.+|...|.++.+++++.        
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            3568899999999999874   346899999999999999864321   23345678888888888877653        


Q ss_pred             ----------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC
Q 048118           77 ----------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP  140 (303)
Q Consensus        77 ----------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  140 (303)
                                      +..|...+.+++|+|++++|++++.|+.|++|+.........  ...+...+.+++|+|++  .
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~~~v~~~~~spdg--~  177 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--LDTRGKFILSIAYSPDG--K  177 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--EECSSSCEEEEEECTTS--S
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCCceEEEEEECCCC--C
Confidence                            235667788999999999999999999999999865432211  22456679999999986  5


Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEc
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFS  219 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s  219 (303)
                      .+++++.|+.|++||+++++....+.+|..+|.+++|+|++++|++++.|++|++||+++++.+..+. ....|.+++|+
T Consensus       178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  257 (321)
T 3ow8_A          178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC  257 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence            89999999999999999999999999999999999999999999999999999999999988887775 45679999999


Q ss_pred             CCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          220 PNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       220 ~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      |++.++ +++.|+.|++||+++++.+..+                    ..+...+.+++|+|++.+|++++.||.|++|
T Consensus       258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTF--------------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCEEEEEE--------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            998655 4567999999999988766543                    2344557889999999999999999999999


Q ss_pred             ec
Q 048118          299 GI  300 (303)
Q Consensus       299 ~~  300 (303)
                      |.
T Consensus       318 d~  319 (321)
T 3ow8_A          318 DC  319 (321)
T ss_dssp             EC
T ss_pred             eC
Confidence            96

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-40  Score=285.42  Aligned_cols=263  Identities=29%  Similarity=0.530  Sum_probs=223.3

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-----------
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-----------   76 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------   76 (303)
                      ...+.+|.+.|+++.|+|++ .+|+||+.|++|++||+....     ....+.+|...|.++.+++++.           
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             eEeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            34578999999999999975 689999999999999987543     3456778999999999988764           


Q ss_pred             -------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           77 -------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        77 -------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                   +.+|...|.+++|+|++.++++++.|+.|++||+.....  ......|...|.++.++|++  ..++
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~g--~~l~  250 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQDG--TLIA  250 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS--SEEE
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCccEEEEEECCCC--CEEE
Confidence                         247899999999999999999999999999999865322  22224678889999999986  5799


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCC--------------------CCEEEEEeCCCeEEEEeCCCCce
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKR  203 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~~v~iwd~~~~~~  203 (303)
                      +++.|+.|++||+.++++...+.+|...|.+++|+|+                    +.+|++|+.|++|++||+++++.
T Consensus       251 s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~  330 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  330 (410)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence            9999999999999999999999999999999999996                    67899999999999999999998


Q ss_pred             EEEec-CCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC
Q 048118          204 LYSLD-AGAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV  281 (303)
Q Consensus       204 ~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  281 (303)
                      +..+. +...|.+++|+|++.++ +++.|+.|++||+++++.+..+                    ..|...+++++|+|
T Consensus       331 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~--------------------~~h~~~v~~l~~~~  390 (410)
T 1vyh_C          331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--------------------NAHEHFVTSLDFHK  390 (410)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE--------------------ECCSSCEEEEEECS
T ss_pred             EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE--------------------cCCCCcEEEEEEcC
Confidence            88775 46789999999998655 5567999999999887655433                    33455678999999


Q ss_pred             CCCEEEEeecCCeEEEEec
Q 048118          282 DGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       282 ~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ++.+|++|+.||+|++|++
T Consensus       391 ~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          391 TAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSSCEEEEETTSEEEEEC-
T ss_pred             CCCEEEEEeCCCcEEEEeC
Confidence            9999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.3e-41  Score=289.61  Aligned_cols=275  Identities=25%  Similarity=0.434  Sum_probs=220.8

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------   76 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------   76 (303)
                      +....++++|.+.|++++|+|++ ++|+||+.|++|++||.....     ....+..|...|.++.++|+++        
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             eEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            44566799999999999999975 689999999999999986532     3345566777777777777653        


Q ss_pred             -----------------------eecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeee---cCCCCccceE
Q 048118           77 -----------------------FVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQ---EGDAHTEWVS  129 (303)
Q Consensus        77 -----------------------~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~i~  129 (303)
                                             +.+|.+.|.++.|+|++ .+|++|+.|+.|++||+.........   ....|...|.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence                                   34788899999999974 57999999999999998654332221   1245778899


Q ss_pred             EEEEcCCCCCCEEEEEeCCCcEEEEECC-CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec
Q 048118          130 CVRFSPNTLQPTIVSASWDRTVKVWNLS-NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD  208 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  208 (303)
                      +++|+|.. ...+++|+.|+.|++||++ ..+....+.+|.+.|++++|+|++++|++|+.|++|++||+++++.+..+.
T Consensus       210 ~~~~~~~~-~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          210 SLSINSLN-ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEEECSSS-CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEeecCC-CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            99998743 3589999999999999997 456778899999999999999999999999999999999999998877664


Q ss_pred             CC--------CeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE
Q 048118          209 AG--------AVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW  279 (303)
Q Consensus       209 ~~--------~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (303)
                      ..        ..+.+++|+|++.+++++ .||.|++||+..++.+..+..                ....|...+++++|
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------------~~~~h~~~v~~l~~  352 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT----------------LQNSHEGRISCLGL  352 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC----------------SCSSCCCCCCEEEE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec----------------ccCCCCCceEEEEE
Confidence            31        247899999998766554 689999999988776554321                01234556788999


Q ss_pred             cCCCCEEEEeecCCeEEEEeccc
Q 048118          280 SVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       280 sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +|++.+|++|+.||+|++|++..
T Consensus       353 s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          353 SSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCCCCEEEEeeCCCCEEEEecCC
Confidence            99999999999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-40  Score=275.94  Aligned_cols=250  Identities=25%  Similarity=0.404  Sum_probs=206.0

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      +.+..++++|.+.|++++|+|++ .+|+||+.|++|++||+.....     ..                  .+.+|..+|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~-----~~------------------~~~~~~~~v   58 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVE-----VR------------------SIQVTETPV   58 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE-----EE------------------EEECCSSCE
T ss_pred             ceeEEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCce-----eE------------------EeeccCCcE
Confidence            45667899999999999999975 6899999999999999864321     11                  245688899


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRA  163 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~  163 (303)
                      .+++|+|++.+|++|+.|+.|++||.......  .....|...|.+++|+|++  ..+++|+.|+.|++||++++ ....
T Consensus        59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~  134 (304)
T 2ynn_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQ  134 (304)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEECCCCcEE--EEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhh
Confidence            99999999999999999999999998654322  2224688899999999986  58999999999999999876 5667


Q ss_pred             EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcC--CCe-EEEEEcCCcEEEEe
Q 048118          164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSP--NRY-WLCAATEQSIKIWD  237 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~--~~~-~l~~~~~~~i~iwd  237 (303)
                      .+.+|...|.+++|+| ++..|++|+.|++|++||++.+.....+.  ....+..++|+|  ++. +++++.|+.|++||
T Consensus       135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (304)
T ss_dssp             EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred             hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence            7899999999999999 67899999999999999998776655543  346788888987  454 55666799999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +++++.+..+                    .+|...+..++|+|++++|++|+.||+|++||+..
T Consensus       215 ~~~~~~~~~~--------------------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          215 YQTKSCVATL--------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             TTTTEEEEEE--------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCccceee--------------------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9988766543                    33445578899999999999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=280.01  Aligned_cols=285  Identities=23%  Similarity=0.338  Sum_probs=220.0

Q ss_pred             Cccceeeccccccccc-ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---
Q 048118            1 MAEGLVLKGTMRAHTD-MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---   76 (303)
Q Consensus         1 ~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---   76 (303)
                      |-+.+.++.++.+|.+ .|++++|+|++ .+||||+.|++|++|++......  .......+|...|.++.++|+++   
T Consensus         1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~   77 (345)
T 3fm0_A            1 MKDSLVLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLA   77 (345)
T ss_dssp             ---CEEEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred             CCccEEEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEE
Confidence            7788999999999998 89999999975 68999999999999998654211  11222357888999999998764   


Q ss_pred             -----------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEE
Q 048118           77 -----------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVR  132 (303)
Q Consensus        77 -----------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~  132 (303)
                                             +.+|.+.|.+++|+|++.+|++++.|+.|++||+..... ........|...|.+++
T Consensus        78 s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence                                   237899999999999999999999999999999864322 22333456888899999


Q ss_pred             EcCCCCCCEEEEEeCCCcEEEEECCCce--eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC---------
Q 048118          133 FSPNTLQPTIVSASWDRTVKVWNLSNCK--LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---------  201 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---------  201 (303)
                      |+|++  ..+++++.|+.|++||..+++  +...+.+|...|++++|+|++++|++++.|++|++||....         
T Consensus       158 ~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          158 WHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             ECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             ECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence            99986  479999999999999997764  45678899999999999999999999999999999996322         


Q ss_pred             ------ceEEEec--CCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccce
Q 048118          202 ------KRLYSLD--AGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI  272 (303)
Q Consensus       202 ------~~~~~~~--~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (303)
                            +.+.++.  ....|.+++|+|++. +++++.|+.|++|+.+.........           ..........|..
T Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----------~~~~~~~~~~h~~  304 (345)
T 3fm0_A          236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT-----------FSLTAHLHQAHSQ  304 (345)
T ss_dssp             ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC-----------EEEEEEETTSSSS
T ss_pred             ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee-----------EEEEeeecccccC
Confidence                  1122222  356799999999875 4456679999999986543110000           0000112345667


Q ss_pred             eEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          273 YCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       273 ~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                      .+++++|+|+++ +|++|+.||+|++|++.
T Consensus       305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             cEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            789999999985 99999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-40  Score=275.41  Aligned_cols=275  Identities=18%  Similarity=0.279  Sum_probs=209.1

Q ss_pred             cceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeee-c-CCCcceEEEEeCCCCc----
Q 048118            3 EGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL-T-GHSHFVQDVVLSSDGQ----   76 (303)
Q Consensus         3 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~----   76 (303)
                      +.+.++..+++|.+.|++++|+|+   +|+||+.|++|++|++.....   .....+ . +|...|.++.++|++.    
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~---~~~~~~~~~~h~~~v~~v~~sp~~~~las   75 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDF---TLIDVLDETAHKKAIRSVAWRPHTSLLAA   75 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCC---EEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred             cccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCe---EEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence            456778889999999999999864   899999999999999865321   112223 2 3788899998888653    


Q ss_pred             ---------------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc--eeeeeecCCCCccc
Q 048118           77 ---------------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKYTIQEGDAHTEW  127 (303)
Q Consensus        77 ---------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~  127 (303)
                                                 +.+|.+.|.+++|+|++.+|++|+.|+.|++||+...  ....+.....|...
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence                                       2368889999999999999999999999999998421  11222333568889


Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc--eeEEEEcCCCCCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCC--
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--KLRATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEG--  201 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~--  201 (303)
                      |.+++|+|++  ..+++++.|+.|++||..++  ++...+.+|.+.|.+++|+|+  +..|++++.|++|++||++.+  
T Consensus       156 v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          156 VKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             EEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             eEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            9999999985  58999999999999998765  577889999999999999998  678999999999999998754  


Q ss_pred             ------ceEEEec--CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccce-
Q 048118          202 ------KRLYSLD--AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI-  272 (303)
Q Consensus       202 ------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  272 (303)
                            ..+..+.  ....|.+++|++++.+++++.|+.|++||.++++......                 ....+.. 
T Consensus       234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-----------------~~~~h~~~  296 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAK-----------------RALCHGVY  296 (330)
T ss_dssp             TSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEE-----------------ESCTTTTS
T ss_pred             cccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEec-----------------cccccccc
Confidence                  2333333  4578999999998888888899999999987653110000                 0122333 


Q ss_pred             eEEEEEEcC--CCCEEEEeecCCeEEEEeccc
Q 048118          273 YCTSLNWSV--DGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       273 ~~~~~~~sp--~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .+.+++|+|  ++.+|++|+.||+|++|++..
T Consensus       297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            567899999  688999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=269.02  Aligned_cols=244  Identities=20%  Similarity=0.246  Sum_probs=195.0

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID   92 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~   92 (303)
                      .|...|++++|+|+  +.|++|+.||+|++||+...+......                   ....+|.+.|.+++|+|+
T Consensus        80 ~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~-------------------~~~~~H~~~V~~v~~spd  138 (344)
T 4gqb_B           80 QTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSK-------------------FCKYEHDDIVSTVSVLSS  138 (344)
T ss_dssp             EESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEE-------------------EEEECCSSCEEEEEECTT
T ss_pred             ccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEee-------------------ccccCCCCCEEEEEECCC
Confidence            35567999999985  479999999999999997543211000                   123579999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc--CCCC
Q 048118           93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA--GHTG  170 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~  170 (303)
                      +++|++|+.|+.|++||+.....  +.....|...|.+++|+|++ ...+++++.|+.|++||+++++....+.  .+..
T Consensus       139 g~~l~sgs~d~~i~iwd~~~~~~--~~~~~~h~~~V~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  215 (344)
T 4gqb_B          139 GTQAVSGSKDICIKVWDLAQQVV--LSSYRAHAAQVTCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY  215 (344)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcE--EEEEcCcCCceEEEEecCCC-CCceeeeccccccccccccccceeeeeecceeec
Confidence            99999999999999999865433  23335788999999999986 3478999999999999999988777664  3456


Q ss_pred             CeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEE-EEEcCCcEEEEeCCCCceeee
Q 048118          171 YVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWL-CAATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       171 ~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~  246 (303)
                      .+.+++|+|+ +++|++|+.||+|++||+++++.+.++. +...|.+++|+|++ .+| +++.|+.|++||+++++++. 
T Consensus       216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-  294 (344)
T 4gqb_B          216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-  294 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-
T ss_pred             cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-
Confidence            7899999994 5688999999999999999999888875 46789999999987 445 46679999999998876532 


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                                          +.+|...+++++|+|+++ +|++||.||+|++|++.
T Consensus       295 --------------------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          295 --------------------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             --------------------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             --------------------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence                                234556788999999986 57799999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-38  Score=271.29  Aligned_cols=265  Identities=18%  Similarity=0.240  Sum_probs=209.4

Q ss_pred             ccccccceeeeecCCCCCcEEEEecC------CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-------
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASR------DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-------   77 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------   77 (303)
                      ..+|.+.|++++|+|++ .+|||||.      |+.+++|+.......... ......|...|.++.|+|++.+       
T Consensus        38 p~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s~d~~~l~~s~dg  115 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-CTAGVQTEAGVTDVAWVSEKGILVASDSG  115 (357)
T ss_dssp             --CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CGGG-CSEEEECSSCEEEEEEETTTEEEEEETTS
T ss_pred             cccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcceeE-ecccCCCCCCEEEEEEcCCCCEEEEECCC
Confidence            45799999999999986 69999998      678999987654332222 2223356677888888876532       


Q ss_pred             --------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC
Q 048118           78 --------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT  137 (303)
Q Consensus        78 --------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  137 (303)
                                          .+|.+.|.+++|+|++++|++++.|+.|++||.......  .....|...|.+++|+|++
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~--~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL--KSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTC
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCCCCCEEEEEEccCC
Confidence                                268899999999999999999999999999998654332  2235688899999999976


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeEEEE--cCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEec-CCCeE
Q 048118          138 LQPTIVSASWDRTVKVWNLSNCKLRATL--AGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLD-AGAVI  213 (303)
Q Consensus       138 ~~~~~~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v  213 (303)
                      . ..+++++.|+.|++||+++++....+  ..+...+++++|+|++ .+|++|+.|+.|++||+++++.+..+. ....|
T Consensus       194 ~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v  272 (357)
T 4g56_B          194 D-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI  272 (357)
T ss_dssp             S-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred             C-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence            3 46899999999999999887765443  3466789999999974 688999999999999999998887775 45789


Q ss_pred             EEEEEcCCC-eEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEee
Q 048118          214 HALCFSPNR-YWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGY  290 (303)
Q Consensus       214 ~~~~~s~~~-~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs  290 (303)
                      .+++|+|++ .+|+ ++.|+.|++||+++++.+..+                     +|...+++++|+| ++.+|++|+
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---------------------~H~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---------------------SHRDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------------------CCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------------------CCCCCEEEEEEeCCCCCEEEEEc
Confidence            999999986 4554 567999999999988765422                     2445678999999 789999999


Q ss_pred             cCCeEEEEecc
Q 048118          291 TDGVIRVWGIG  301 (303)
Q Consensus       291 ~Dg~v~~w~~~  301 (303)
                      .||+|++|++.
T Consensus       332 ~Dg~v~iW~~~  342 (357)
T 4g56_B          332 WDHKVLHHHLP  342 (357)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCeEEEEECC
Confidence            99999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-38  Score=262.32  Aligned_cols=256  Identities=19%  Similarity=0.301  Sum_probs=196.3

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+.+|.+.|++++|+|++ ++||||+.|++|++|++......   ..                  ..+.+|.++|.+++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~---~~------------------~~l~gH~~~V~~v~   60 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHK---LI------------------DTLTGHEGPVWRVD   60 (297)
T ss_dssp             EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBC---CC------------------EEECCCSSCEEEEE
T ss_pred             eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcE---EE------------------EEEccccCCeEEEE
Confidence            3578999999999999875 68999999999999998632110   01                  13568999999999


Q ss_pred             EeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce--eEEE
Q 048118           89 FSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK--LRAT  164 (303)
Q Consensus        89 ~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~--~~~~  164 (303)
                      |+++  +.+|++|+.|+.|++||..............|...|.+++|+|+.....+++++.|+.|++||+++..  ....
T Consensus        61 ~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  140 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII  140 (297)
T ss_dssp             ECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred             ecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee
Confidence            9863  88999999999999999864321122223457888999999997323589999999999999997653  2456


Q ss_pred             EcCCCCCeeEEEECCC-------------CCEEEEEeCCCeEEEEeCCCCc----eEEEec-CCCeEEEEEEcCCC---e
Q 048118          165 LAGHTGYVNTVAVSPD-------------GSLCASGGKDGVILLWDLAEGK----RLYSLD-AGAVIHALCFSPNR---Y  223 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~-------------~~~l~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~s~~~---~  223 (303)
                      +.+|...|.+++|+|+             +++|++|+.|++|++||+++++    .+..+. +...|.+++|+|++   .
T Consensus       141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence            7789999999999997             5799999999999999998765    344443 45789999999984   5


Q ss_pred             EE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          224 WL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       224 ~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++ +++.|+.|++||++..........               .....+...+.+++|+|++++|++|+.||+|++|+..
T Consensus       221 ~las~s~D~~v~iWd~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          221 YMASVSQDRTCIIWTQDNEQGPWKKTL---------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEETTSCEEEEEESSTTSCCEEEE---------------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEECCCcEEEEEeCCCCCccceee---------------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            55 456799999999876421100000               0001233457889999999999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.8e-37  Score=255.62  Aligned_cols=270  Identities=26%  Similarity=0.449  Sum_probs=215.1

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD   83 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~   83 (303)
                      +..+..++.+|.+.|++++|+|++ ++|++|+.|+.|++|+......     ..                  .+.+|...
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~-----~~------------------~~~~h~~~   67 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKF-----EK------------------TISGHKLG   67 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE-----EE------------------EECCCSSC
T ss_pred             CceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCccc-----ch------------------hhccCCCc
Confidence            345677899999999999999875 6899999999999999864321     11                  23568889


Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      |.+++|+|++.+|++++.|+.|++||+......  .....|...|.+++|+|++  ..+++++.|+.|++||+++++...
T Consensus        68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~  143 (312)
T 4ery_A           68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLK  143 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE--EEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEE
Confidence            999999999999999999999999998654322  2223577889999999985  589999999999999999999999


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCC
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLC-AATEQSIKIWDLES  240 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~  240 (303)
                      .+..|..+|.+++|+|++++|++++.|+.|++||+++++.+..+.  ....+..++|+|++.+++ ++.|+.|++||+++
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999999999999999999999999999999998877663  346789999999986554 55699999999998


Q ss_pred             Cceeeeeeeccccc-----------c-------cc-------ccCccceeeccccceeEEEEEEcCCCCEEEEee--cCC
Q 048118          241 KSIVEDLKVDLKTE-----------A-------EK-------SEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY--TDG  293 (303)
Q Consensus       241 ~~~~~~~~~~~~~~-----------~-------~~-------~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs--~Dg  293 (303)
                      ++.+..+..+....           .       ..       .........+.+|...+.+++|+|++++|++++  .||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~  303 (312)
T 4ery_A          224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK  303 (312)
T ss_dssp             TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred             CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence            87765543211100           0       00       000111234455666788999999999999987  699


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      +|++|+..
T Consensus       304 ~i~~W~~d  311 (312)
T 4ery_A          304 TIKLWKSD  311 (312)
T ss_dssp             CEEEEECC
T ss_pred             cEEEecCC
Confidence            99999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.4e-37  Score=279.43  Aligned_cols=266  Identities=23%  Similarity=0.316  Sum_probs=218.9

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc----------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ----------   76 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------   76 (303)
                      ....+.+|.+.|++++|+|++ .+||||+.|++|++||+...+.   .....+.+|...|.++.|+|+++          
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~---~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH---ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC---CEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             cCeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcc---eeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            445688999999999999975 6999999999999999864321   23345677888999999998764          


Q ss_pred             ----------------eecccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCC
Q 048118           77 ----------------FVGHTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ  139 (303)
Q Consensus        77 ----------------~~~h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  139 (303)
                                      +.+|.+.|.+++|+|++. +|++++.|+.|++||......  ......|...|.+++|+|++  
T Consensus       127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~~~l~~H~~~V~~v~fspdg--  202 (611)
T 1nr0_A          127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDG--  202 (611)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTS--
T ss_pred             ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE--eeeeccccCceEEEEECCCC--
Confidence                            347889999999999987 699999999999999754322  22335688899999999986  


Q ss_pred             CEEEEEeCCCcEEEEECCCceeEEEEc-------CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--
Q 048118          140 PTIVSASWDRTVKVWNLSNCKLRATLA-------GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--  210 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--  210 (303)
                      ..+++++.|+.|++||+.+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+++++.+.++...  
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            589999999999999999888877774       79999999999999999999999999999999999888776432  


Q ss_pred             --CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE
Q 048118          211 --AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS  288 (303)
Q Consensus       211 --~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~  288 (303)
                        .....+.|. ...+++++.++.|++||.+.++....                    +.+|...+++++|+|++++|++
T Consensus       283 ~~~~~~~~~~~-~~~l~s~s~d~~i~~~~~~~~~~~~~--------------------~~gh~~~v~~l~~spdg~~l~s  341 (611)
T 1nr0_A          283 IEDQQLGIIWT-KQALVSISANGFINFVNPELGSIDQV--------------------RYGHNKAITALSSSADGKTLFS  341 (611)
T ss_dssp             GGGCEEEEEEC-SSCEEEEETTCCEEEEETTTTEEEEE--------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccceeEEEEEc-CCEEEEEeCCCcEEEEeCCCCCcceE--------------------EcCCCCCEEEEEEeCCCCEEEE
Confidence              245566673 45677788899999999887654322                    2345566889999999999999


Q ss_pred             eecCCeEEEEecc
Q 048118          289 GYTDGVIRVWGIG  301 (303)
Q Consensus       289 gs~Dg~v~~w~~~  301 (303)
                      |+.||+|++||+.
T Consensus       342 ~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          342 ADAEGHINSWDIS  354 (611)
T ss_dssp             EETTSCEEEEETT
T ss_pred             EeCCCcEEEEECC
Confidence            9999999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8e-37  Score=277.75  Aligned_cols=268  Identities=22%  Similarity=0.349  Sum_probs=210.9

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-----------
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-----------   77 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------   77 (303)
                      .++.+|.+.|++++|+|++..+|++|+.|++|++|+....     .....+.+|...|.++.++|++++           
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~  215 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV  215 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-----eEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence            4688999999999999987667999999999999997542     345567889999999999998642           


Q ss_pred             --------------e------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-ee------------------
Q 048118           78 --------------V------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TI------------------  118 (303)
Q Consensus        78 --------------~------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~------------------  118 (303)
                                    .      +|.+.|.+++|+|++++|++++.|+.|++||+...... .+                  
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ  295 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence                          1      69999999999999999999999999999997532111 10                  


Q ss_pred             ----------------------ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-c---------
Q 048118          119 ----------------------QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-A---------  166 (303)
Q Consensus       119 ----------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~---------  166 (303)
                                            .....|...|.+++|+|++  ..+++++.|+.|++||+.+++....+ .         
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~  373 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI  373 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence                                  1123578889999999986  57999999999999998765432211 0         


Q ss_pred             ------------------------------------------------------------------------CCCCCeeE
Q 048118          167 ------------------------------------------------------------------------GHTGYVNT  174 (303)
Q Consensus       167 ------------------------------------------------------------------------~~~~~i~~  174 (303)
                                                                                              .|...+.+
T Consensus       374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~  453 (611)
T 1nr0_A          374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC  453 (611)
T ss_dssp             EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEE
T ss_pred             EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceE
Confidence                                                                                    02234678


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCC-Cceeeeeeec
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLES-KSIVEDLKVD  250 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~-~~~~~~~~~~  250 (303)
                      ++|+|++++|++|+.|++|++||+.+++.  +....+...|.+++|+|++.+|++ +.|+.|++||+.+ ++++..    
T Consensus       454 va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~----  529 (611)
T 1nr0_A          454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT----  529 (611)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC----
T ss_pred             EEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee----
Confidence            99999999999999999999999987643  233456678999999999877665 5689999999876 332211    


Q ss_pred             cccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                    .....|...+++++|+|++++|++|+.||+|++|++.
T Consensus       530 --------------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          530 --------------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             --------------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             --------------eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence                          0112255668899999999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.1e-38  Score=263.16  Aligned_cols=254  Identities=20%  Similarity=0.291  Sum_probs=189.7

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.+|.+.|++++|+|++ ++||||+.|++|++||+......   ..                  ..+.+|.+.|.+++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~---~~------------------~~l~gH~~~V~~v~~   65 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQI---LI------------------ADLRGHEGPVWQVAW   65 (316)
T ss_dssp             ------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEE---EE------------------EEEECCSSCEEEEEE
T ss_pred             ecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcE---EE------------------EEEcCCCccEEEEEe
Confidence            478999999999999875 68999999999999998643210   00                  135689999999999


Q ss_pred             ee--CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEE
Q 048118           90 SI--DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRAT  164 (303)
Q Consensus        90 ~~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~  164 (303)
                      ++  ++.+|++|+.|+.|++||..............|...|.+++|+|+.....+++++.|+.|++||++...   ....
T Consensus        66 ~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           66 AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             CCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee
Confidence            86  488999999999999999865321222233467888999999997434579999999999999997653   2344


Q ss_pred             EcCCCCCeeEEEECCC-----------------CCEEEEEeCCCeEEEEeCCCC---ceEEEec-CCCeEEEEEEcCCC-
Q 048118          165 LAGHTGYVNTVAVSPD-----------------GSLCASGGKDGVILLWDLAEG---KRLYSLD-AGAVIHALCFSPNR-  222 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~-----------------~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~~v~~~~~s~~~-  222 (303)
                      +.+|...+.+++|+|+                 +++|++|+.|++|++||++.+   +.+..+. +...|.+++|+|++ 
T Consensus       146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            5678899999999997                 468999999999999999754   2444443 45689999999985 


Q ss_pred             ---e-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEE
Q 048118          223 ---Y-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       223 ---~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                         . +++++.|+.|++||++....... .               ...+..+...+.+++|+|++++|++|+.||+|++|
T Consensus       226 ~~~~~las~s~D~~v~iw~~~~~~~~~~-~---------------~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          226 LPTSTIASCSQDGRVFIWTCDDASSNTW-S---------------PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             CSCCEEEEEETTCEEEEEECSSTTCCCC-B---------------CCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             CCCceEEEEcCCCeEEEEEccCccccch-h---------------hhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence               4 45566799999999875311000 0               00112234467889999999999999999999999


Q ss_pred             ecc
Q 048118          299 GIG  301 (303)
Q Consensus       299 ~~~  301 (303)
                      +..
T Consensus       290 ~~~  292 (316)
T 3bg1_A          290 KES  292 (316)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            964

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.6e-36  Score=260.38  Aligned_cols=274  Identities=17%  Similarity=0.252  Sum_probs=211.5

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD   83 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~   83 (303)
                      .+.+...+.+|.+.|++++|+|++..+|++|+.|+.|++|++.......     .+                ...+|.+.
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~----------------~~~~h~~~  120 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FI----------------QGMGPGDA  120 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EE----------------CCCSTTCB
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----ee----------------ecCCcCCc
Confidence            4566778899999999999999876799999999999999987543210     00                12368899


Q ss_pred             EEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           84 VLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        84 i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      |.+++|+| ++.+|++++.|+.|++||+.+...........+...|.+++|+|++  ..+++++.|+.|++||+ +++..
T Consensus       121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR--QMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             EEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT--TEEEEEETTSEEEEEET-TSCEE
T ss_pred             eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC--CEEEEECCCCCEEEEEC-CCCEE
Confidence            99999999 6789999999999999999875554454444566789999999986  58999999999999999 56677


Q ss_pred             EEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCC----CceEEEecCCCeEEEEEEcC-CCeEEE-EEcCCcEEE
Q 048118          163 ATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE----GKRLYSLDAGAVIHALCFSP-NRYWLC-AATEQSIKI  235 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~-~~~~~~i~i  235 (303)
                      ..+.+|...|.+++|+|+++ +|++++.|+.|++||+++    +..+..+.....+.+++|+| ++.+++ ++.|+.|++
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            88899999999999999998 999999999999999987    66677777788999999999 886555 556899999


Q ss_pred             EeCCCCceeeeeeeccccc-------------------------c-----ccc-------cCccceeeccc--cceeEEE
Q 048118          236 WDLESKSIVEDLKVDLKTE-------------------------A-----EKS-------EATTATTTIKK--KNIYCTS  276 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~-------------------------~-----~~~-------~~~~~~~~~~~--~~~~~~~  276 (303)
                      ||+++++.+..+.......                         .     ...       ........+..  +...+..
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~  357 (383)
T 3ei3_B          278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL  357 (383)
T ss_dssp             EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred             EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence            9998876654443111000                         0     000       00001112222  2334456


Q ss_pred             EEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          277 LNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       277 ~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ++|+|++++|++|+ ||.|++||+..
T Consensus       358 ~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          358 NKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEecCccEEEEec-CCcEEEEecCC
Confidence            79999999999997 99999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-36  Score=269.76  Aligned_cols=258  Identities=36%  Similarity=0.589  Sum_probs=213.6

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc----------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ----------   76 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------   76 (303)
                      +...+.+|...|++++++|++ .+|++++.|++|++|+....      ....+.+|...+.++.++|+++          
T Consensus       295 ~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  367 (577)
T 2ymu_A          295 LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKT  367 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCC------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            344678999999999999875 68999999999999997532      2345667788888888888764          


Q ss_pred             -------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           77 -------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        77 -------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                   +.+|...|.+++|+|++++|++++.|+.|++|+..+......   ..|...|.+++|+|++  ..++
T Consensus       368 v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~---~~~~~~v~~~~~s~d~--~~l~  442 (577)
T 2ymu_A          368 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVWGVAFSPDD--QTIA  442 (577)
T ss_dssp             EEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE---ECCSSCEEEEEECTTS--SEEE
T ss_pred             EEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe---cCCCCCeEEEEECCCC--CEEE
Confidence                         247889999999999999999999999999999765433222   3577889999999986  5799


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR  222 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~  222 (303)
                      +++.|+.|++||. +++....+.+|...|++++|+|++++|++++.|++|++||. +++.+..+. +...|.+++|+|++
T Consensus       443 ~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg  520 (577)
T 2ymu_A          443 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG  520 (577)
T ss_dssp             EEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC
Confidence            9999999999996 56677788999999999999999999999999999999995 566666664 46789999999998


Q ss_pred             eEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          223 YWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       223 ~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .+|+ ++.|+.|++||. +++.+..                    +.+|...+++++|+||+++|+||+.||+|++||
T Consensus       521 ~~l~s~~~dg~v~lwd~-~~~~~~~--------------------~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          521 QTIASASDDKTVKLWNR-NGQLLQT--------------------LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEEEEETTSEEEEECT-TSCEEEE--------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECcCEEEEEeC-CCCEEEE--------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            7665 556899999996 4444332                    234556678999999999999999999999997

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.4e-37  Score=268.56  Aligned_cols=215  Identities=18%  Similarity=0.269  Sum_probs=172.5

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      +.....+|...|++|+|+|.++.+||+|+.||+|+|||+...+...   .                  -.+.+|.+.|.+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~---~------------------~~~~gH~~~V~~  169 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT---F------------------IKGIGAGGSITG  169 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE---E------------------ECCCSSSCCCCE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee---E------------------EEccCCCCCEEE
Confidence            4445677888999999999878899999999999999986433210   0                  024579999999


Q ss_pred             EEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           87 VAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        87 i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      ++|+| ++.+|++++.|++|++||+.+...........+...+.+++|+|++  ..+++|+.||.|++||++. +....+
T Consensus       170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~dg~i~~wd~~~-~~~~~~  246 (435)
T 4e54_B          170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS--RMVVTGDNVGNVILLNMDG-KELWNL  246 (435)
T ss_dssp             EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT--TEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC--CEEEEEeCCCcEeeeccCc-ceeEEE
Confidence            99998 6889999999999999999765544444444455567889999986  5899999999999999865 445667


Q ss_pred             cCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEe----cCCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCC
Q 048118          166 AGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSL----DAGAVIHALCFSPNRYWLC-AATEQSIKIWDLE  239 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~  239 (303)
                      .+|...|++++|+|+++ +|++++.|++|++||+++.+....+    .+...|.+++|+|++.+|+ ++.|+.|++||++
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            88999999999999876 7889999999999999876543332    3467899999999986554 5679999999998


Q ss_pred             CCceee
Q 048118          240 SKSIVE  245 (303)
Q Consensus       240 ~~~~~~  245 (303)
                      +++...
T Consensus       327 ~~~~~~  332 (435)
T 4e54_B          327 QWDCPL  332 (435)
T ss_dssp             SSSSEE
T ss_pred             CCccce
Confidence            876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.6e-35  Score=251.94  Aligned_cols=264  Identities=22%  Similarity=0.374  Sum_probs=200.0

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeee-------------eecCCCcceEEEEeCCCCc---
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARR-------------RLTGHSHFVQDVVLSSDGQ---   76 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~---   76 (303)
                      +|...|++++|+|++ ++||+|+ |+++++|++..+.........             ....+...|.++.++|+++   
T Consensus        62 ~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            699999999999975 5888876 789999998654321100000             0001223588888988764   


Q ss_pred             ---------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcC
Q 048118           77 ---------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP  135 (303)
Q Consensus        77 ---------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~  135 (303)
                                           +.+|...|.+++|+|++.+|++++.|+.|++||+.........   .+...+.+++|+|
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~  216 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL---SIEDGVTTVAVSP  216 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECS
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE---EcCCCcEEEEEEC
Confidence                                 2479999999999999999999999999999998654322221   1345689999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCceeEEEE-------cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc------
Q 048118          136 NTLQPTIVSASWDRTVKVWNLSNCKLRATL-------AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------  202 (303)
Q Consensus       136 ~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------  202 (303)
                      .. ...+++++.|+.|++||+++++....+       .+|...|++++|+|++++|++++.|++|++||+++..      
T Consensus       217 ~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          217 GD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             TT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            43 258999999999999999988776665       5788999999999999999999999999999997643      


Q ss_pred             ------eEEEe-cCCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeE
Q 048118          203 ------RLYSL-DAGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       203 ------~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                            ....+ .+...|.+++|+|++.+++ ++.|+.|++||+++++.+..+                    .+|...+
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l--------------------~~h~~~v  355 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--------------------QGHRNSV  355 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSSCE
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE--------------------CCCCCCE
Confidence                  22222 3456799999999986554 567899999999988765433                    2344456


Q ss_pred             EEEEEcC------CCCEEEEeecCCeEEEEeccc
Q 048118          275 TSLNWSV------DGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       275 ~~~~~sp------~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .+++|+|      ++.+|++|+.||+|++|++.+
T Consensus       356 ~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            7788765      688999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-35  Score=254.28  Aligned_cols=291  Identities=16%  Similarity=0.197  Sum_probs=221.2

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccc-cceeeeeecCCCcceEEEEeCCC----C---c
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKT-YGVARRRLTGHSHFVQDVVLSSD----G---Q   76 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~----~---~   76 (303)
                      +.+...+++|.+.|++++|+|   ++|++|+.|++|++|++...+.. .......+.+|...|.++.++++    +   .
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence            455667899999999999987   68999999999999999765411 01124455577778888887776    5   3


Q ss_pred             e-----------------------------ecc-----cCCEEEEEEe----eCCCE-EEEEeCCCcEEEEecCC-----
Q 048118           77 F-----------------------------VGH-----TKDVLSVAFS----IDNRQ-IVSASRDRTIKLWNTLG-----  112 (303)
Q Consensus        77 ~-----------------------------~~h-----~~~i~~i~~~----~~~~~-l~t~~~d~~i~vw~~~~-----  112 (303)
                      +                             ..|     ...|.+++|+    |++.+ |++++.|+.|++||+..     
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            2                             245     5899999999    99999 99999999999999755     


Q ss_pred             -ceeee-----eecC-----CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC---C---CCCeeEE
Q 048118          113 -ECKYT-----IQEG-----DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG---H---TGYVNTV  175 (303)
Q Consensus       113 -~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~~  175 (303)
                       .....     ....     ..|...|.+++|+|++   .+++++.|+.|++||+++++....+..   |   ...|.++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence             21111     1111     3467789999999975   799999999999999999999888988   8   9999999


Q ss_pred             EECCCCCEEEEEeCC---CeEEEEeCCCCceEEEec--------------CCCeEEEEEEcCCCeEEEE-EcCCcEEEEe
Q 048118          176 AVSPDGSLCASGGKD---GVILLWDLAEGKRLYSLD--------------AGAVIHALCFSPNRYWLCA-ATEQSIKIWD  237 (303)
Q Consensus       176 ~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd  237 (303)
                      +|+|++++|++++.|   +.|++||+++++.+..+.              ....+.+++|+|++.++++ +.|+.|++||
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999   999999999998888775              4678999999999866654 5689999999


Q ss_pred             CCCCceeeeeeeccccccc-cccCccceeeccccceeEEEEEEcCCC----------CEEEEeecCCeEEEEecc
Q 048118          238 LESKSIVEDLKVDLKTEAE-KSEATTATTTIKKKNIYCTSLNWSVDG----------STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~----------~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++++.+..+......... .............+...+.+++|+|++          .+|++|+.||.|++|++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            9999887766522110000 000000001112235667899999998          799999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.4e-34  Score=240.89  Aligned_cols=263  Identities=17%  Similarity=0.286  Sum_probs=212.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc--------------
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ--------------   76 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------   76 (303)
                      ..+|.+.|++++|+|++ +++++++ |+.|++|++................|...+.++.++|+++              
T Consensus        47 ~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            44799999999999875 6888888 9999999997654322222222336778888888888763              


Q ss_pred             ------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE
Q 048118           77 ------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS  144 (303)
Q Consensus        77 ------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  144 (303)
                                  +.+|...|.+++|+|++.++++++.|+.|++||+......  .....|...+.+++|+|++  ..+++
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~--~~l~~  200 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV--RQFQGHTDGASCIDISNDG--TKLWT  200 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTS--SEEEE
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee--eeeecccCceEEEEECCCC--CEEEE
Confidence                        2367788999999999999999999999999998654332  2224577889999999976  57999


Q ss_pred             EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeE
Q 048118          145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW  224 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  224 (303)
                      ++.|+.|++||+++++....+. +...+.+++|+|++++|++++.|+.|++||+++++..........+.+++|+|++.+
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred             EecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCE
Confidence            9999999999999988777664 677899999999999999999999999999998876655556788999999999865


Q ss_pred             EE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          225 LC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       225 l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++ ++.++.|++||+++++.+....                     +...+.+++|+|++++|++|+.||.|++|++-
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQSK---------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEec---------------------CCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            55 5568999999999877653211                     22346789999999999999999999999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=249.41  Aligned_cols=254  Identities=21%  Similarity=0.200  Sum_probs=191.9

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ...|...|.+++|+|++ .+|++++ |+++++|+.....     .......+....       ......|...|.+++|+
T Consensus        26 ~~~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s   91 (344)
T 4gqb_B           26 PACMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWL-----FKDPCAAPNEGF-------CSAGVQTEAGVADLTWV   91 (344)
T ss_dssp             CSSCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEE-----ESSGGGTTCGGG-------CSEEEEESSCEEEEEEE
T ss_pred             cccccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeee-----eccccccCCcce-------eeeeeccCCCEEEEEEe
Confidence            34567789999999986 5777776 7889999743100     000000000000       00123467789999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceee-ee-ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKY-TI-QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~  168 (303)
                      |++ .+++++.|+.|+|||+...... .. .....|...|.+++|+|++  ..+++|+.|+.|++||+.++++...+.+|
T Consensus        92 ~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  168 (344)
T 4gqb_B           92 GER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--TQAVSGSKDICIKVWDLAQQVVLSSYRAH  168 (344)
T ss_dssp             TTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence            985 6889999999999998643221 11 1223688899999999986  57999999999999999999999999999


Q ss_pred             CCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEEEcCC-CeEEE-EEcCCcEEEEeCCCCc
Q 048118          169 TGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALCFSPN-RYWLC-AATEQSIKIWDLESKS  242 (303)
Q Consensus       169 ~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~-~~~l~-~~~~~~i~iwd~~~~~  242 (303)
                      .+.|++++|+|++. +|++++.|++|++||+++++.+..+.   ....+.+++|+|+ +.+++ ++.|+.|++||+++++
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            99999999999875 78999999999999999998877764   2456899999996 45555 5678999999999887


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC-CEEEEeecCCeEEEEecc
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG-STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~gs~Dg~v~~w~~~  301 (303)
                      .+..+                    ..|...+++++|+|++ ++|++|+.||+|++||+.
T Consensus       249 ~~~~~--------------------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          249 CVLSS--------------------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             CCEEE--------------------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EEEEE--------------------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            65443                    3345567889999998 589999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=245.38  Aligned_cols=265  Identities=15%  Similarity=0.225  Sum_probs=217.5

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-----------
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-----------   77 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------   77 (303)
                      ..+.+|.+.|++++|+|++ ++|++|+.|+.|++|++....     ....+.+|...|.++.+++++.+           
T Consensus        26 ~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             EEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            3588999999999999864 699999999999999986532     34566788889999999887642           


Q ss_pred             ------------ecccCCEEEEEEeeCCCEEEEEeCC-----CcEEEEecCCcee---e------eeecCCCCcc--ceE
Q 048118           78 ------------VGHTKDVLSVAFSIDNRQIVSASRD-----RTIKLWNTLGECK---Y------TIQEGDAHTE--WVS  129 (303)
Q Consensus        78 ------------~~h~~~i~~i~~~~~~~~l~t~~~d-----~~i~vw~~~~~~~---~------~~~~~~~~~~--~i~  129 (303)
                                  ..|...|.+++|+|++.++++++.+     +.|++|++.....   .      .......+..  .+.
T Consensus       100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence                        1467789999999999999999998     9999998642210   0      0001112222  799


Q ss_pred             EEEEcCCCCCCEEEEEeCCCcEEEEECCC-ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec
Q 048118          130 CVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD  208 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  208 (303)
                      +++|+|++  ..+++++.||.|++||+.+ .+....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       180 ~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          180 VAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            99999976  4789999999999999988 78888899999999999999999999999999999999999999988888


Q ss_pred             CCCeEEEEEEcCCCeEEEEE-cCC--------------cEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118          209 AGAVIHALCFSPNRYWLCAA-TEQ--------------SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~-~~~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (303)
                      ....+..++|+|++.+++++ .++              .+++||+++++.+..+                    ..+...
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------------------~~~~~~  317 (369)
T 3zwl_B          258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--------------------QGHFGP  317 (369)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE--------------------ECCSSC
T ss_pred             CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe--------------------ecccCc
Confidence            88899999999998776654 455              6899998887665443                    234456


Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          274 CTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       274 ~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+++|+|++++|++|+.||.|++|++.
T Consensus       318 v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          318 LNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence            7889999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.4e-35  Score=247.83  Aligned_cols=285  Identities=15%  Similarity=0.177  Sum_probs=219.9

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-------------
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-------------   77 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------   77 (303)
                      +..|.+.|++++|+|++ ++|++++.|+.|++|++...+   ......+.+|...|.++.+++++.+             
T Consensus         4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTE---EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCc---EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            34588999999999875 689999999999999987542   1134566788889999998887632             


Q ss_pred             -------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEE
Q 048118           78 -------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTI  142 (303)
Q Consensus        78 -------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~  142 (303)
                                   ..|...|.+++|+|++.++++++.|+.|++|+......  ........|...|.+++|+|++  ..+
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l  157 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--VLL  157 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--SEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC--CEE
Confidence                         35788999999999999999999999999999754321  1122234577889999999975  579


Q ss_pred             EEEeCCCcEEEEECC------------------CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118          143 VSASWDRTVKVWNLS------------------NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL  204 (303)
Q Consensus       143 ~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  204 (303)
                      ++++.|+.|++||++                  .++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            999999999999953                  56778888899999999999999999999999999999999999988


Q ss_pred             EEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCC--Cce--eeeeeeccccc---------c---c-cccC---ccc
Q 048118          205 YSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLES--KSI--VEDLKVDLKTE---------A---E-KSEA---TTA  263 (303)
Q Consensus       205 ~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~--~~~--~~~~~~~~~~~---------~---~-~~~~---~~~  263 (303)
                      ..+.. ...+.+++|+|++.+++++.++.|++|+++.  ++.  +..+.......         .   . ....   ...
T Consensus       238 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA  317 (372)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred             EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence            87754 4589999999999999999999999999987  532  11111100000         0   0 0000   000


Q ss_pred             eeec-cccceeEEEEEEc-CCC---CEEEEeecCCeEEEEecc
Q 048118          264 TTTI-KKKNIYCTSLNWS-VDG---STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       264 ~~~~-~~~~~~~~~~~~s-p~~---~~l~~gs~Dg~v~~w~~~  301 (303)
                      ...+ .+|...+++++|+ +++   .+|++|+.||.|++|++.
T Consensus       318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence            0122 3667788999866 666   899999999999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=251.29  Aligned_cols=258  Identities=19%  Similarity=0.318  Sum_probs=200.6

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ++..+++|.+.|++++|+|++ ++|++|+.|+.|++|++......   ..                  ..+.+|.+.|.+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~---~~------------------~~~~~h~~~v~~   60 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHK---LI------------------DTLTGHEGPVWR   60 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE---EE------------------EEECCCSSCEEE
T ss_pred             ccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcce---ee------------------eEecCCCCcEEE
Confidence            345789999999999999875 68999999999999998632111   11                  134578999999


Q ss_pred             EEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc--eeE
Q 048118           87 VAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--KLR  162 (303)
Q Consensus        87 i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~--~~~  162 (303)
                      ++|+++  +.+|++++.|+.|++||+.............|...|.+++|+|+.....+++++.|+.|++||+.+.  ...
T Consensus        61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  140 (379)
T 3jrp_A           61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP  140 (379)
T ss_dssp             EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred             EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence            999977  8999999999999999986553223333456788899999999832258999999999999999876  344


Q ss_pred             EEEcCCCCCeeEEEECC-------------CCCEEEEEeCCCeEEEEeCCCCceE----EEec-CCCeEEEEEEcCC---
Q 048118          163 ATLAGHTGYVNTVAVSP-------------DGSLCASGGKDGVILLWDLAEGKRL----YSLD-AGAVIHALCFSPN---  221 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~-~~~~v~~~~~s~~---  221 (303)
                      ..+..|...|.+++|+|             ++.+|++++.|+.|++||++++...    ..+. +...|.+++|+|+   
T Consensus       141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  220 (379)
T 3jrp_A          141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  220 (379)
T ss_dssp             EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence            56778999999999999             6899999999999999999876532    3333 4678999999999   


Q ss_pred             CeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          222 RYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       222 ~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +.+++ ++.|+.|++||++++........               .....+...+.+++|+|++.+|++++.||.|++|++
T Consensus       221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          221 RSYLASVSQDRTCIIWTQDNEQGPWKKTL---------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEE---------------SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEeCCCCCccceeee---------------eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            76665 45699999999987642111110               011223445788999999999999999999999998


Q ss_pred             c
Q 048118          301 G  301 (303)
Q Consensus       301 ~  301 (303)
                      .
T Consensus       286 ~  286 (379)
T 3jrp_A          286 N  286 (379)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.7e-35  Score=243.32  Aligned_cols=248  Identities=26%  Similarity=0.377  Sum_probs=197.1

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      .+..+.+|...|.++.|+|++ ++|++|+.|++|++||+...+..     .                  .+.+|.+.|.+
T Consensus        47 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~-----~------------------~~~~h~~~v~~  102 (304)
T 2ynn_A           47 EVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKV-----V------------------DFEAHPDYIRS  102 (304)
T ss_dssp             EEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEE-----E------------------EEECCSSCEEE
T ss_pred             eeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcEE-----E------------------EEeCCCCcEEE
Confidence            345678899999999999874 68999999999999998754321     1                  35679999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-  165 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-  165 (303)
                      ++|+|++.+|++|+.|+.|++||+...... ......|...|.+++|+|.. ...+++|+.|+.|++||+........+ 
T Consensus       103 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~~h~~~v~~v~~~p~~-~~~l~sgs~D~~v~iwd~~~~~~~~~~~  180 (304)
T 2ynn_A          103 IAVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLT  180 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEGGGTTEE-EEEECCCCSCEEEEEECTTC-TTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred             EEEcCCCCEEEEECCCCeEEEEECCCCcch-hhhhcccCCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCccceec
Confidence            999999999999999999999998543211 22235688899999999954 257999999999999999876655444 


Q ss_pred             cCCCCCeeEEEECC--CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCC
Q 048118          166 AGHTGYVNTVAVSP--DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLC-AATEQSIKIWDLESK  241 (303)
Q Consensus       166 ~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~  241 (303)
                      .+|...+..+.++|  ++++|++++.|++|++||+++++.+.++. +...|.+++|+|++.+++ ++.|+.|++||++++
T Consensus       181 ~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            45667899999987  67899999999999999999999888875 457899999999986555 557999999999998


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC--EEEEeecCCeEEEEecc
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS--TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+..+..                    +...+++++|+|++.  ++++|+.|| +.+|+++
T Consensus       261 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          261 KVEKTLNV--------------------GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             CEEEEECC--------------------SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             ceeeeccC--------------------CCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            87665432                    223457799999875  577777555 5577764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.2e-34  Score=257.82  Aligned_cols=260  Identities=36%  Similarity=0.572  Sum_probs=213.9

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc----------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ----------   76 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------   76 (303)
                      .+..+.+|...|++++|+|++ .++++++.|++|++|+...      .....+.+|...|..+.++|+++          
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~  326 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT  326 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence            344678899999999999875 6899999999999999642      23455678888899998888763          


Q ss_pred             -------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           77 -------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        77 -------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                   +.+|...|.+++|+|+++++++++.|+.|++|+..+.....+   ..|...|.+++|+|++  ..++
T Consensus       327 i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~---~~~~~~v~~~~~s~dg--~~l~  401 (577)
T 2ymu_A          327 VKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVRGVAFSPDG--QTIA  401 (577)
T ss_dssp             EEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE---ECCSSCEEEEEECTTS--SCEE
T ss_pred             EEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe---cCCCCCeEEEEECCCC--CEEE
Confidence                         236888999999999999999999999999999765443333   3577889999999986  4689


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCC
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNR  222 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~  222 (303)
                      +++.|+.|++||. +++....+.+|...|++++|+|++++|++++.|++|++||+. ++.+..+ .....+.+++|+|++
T Consensus       402 ~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~  479 (577)
T 2ymu_A          402 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG  479 (577)
T ss_dssp             EEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCC
Confidence            9999999999996 566778889999999999999999999999999999999974 4555554 456789999999998


Q ss_pred             eEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          223 YWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       223 ~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .++++ +.|+.|++||. +++.+..+                    .+|...+++++|+|++++|++|+.||.|++||..
T Consensus       480 ~~las~~~d~~i~iw~~-~~~~~~~~--------------------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          480 QTIASASDDKTVKLWNR-NGQLLQTL--------------------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             CEEEEEETTSEEEEEET-TSCEEEEE--------------------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             CEEEEEeCCCEEEEEcC-CCCEEEEE--------------------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            77665 56899999996 45444332                    2344567889999999999999999999999963

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=239.01  Aligned_cols=260  Identities=25%  Similarity=0.473  Sum_probs=210.5

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------   76 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------   76 (303)
                      +..+..++++|.+.|++++| |++ ++|++|+.|+.|++|++....     ....+..|...+.++.++|++.       
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecC
Confidence            45677789999999999999 654 689999999999999985432     2344556677888888877653       


Q ss_pred             --------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118           77 --------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        77 --------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~  136 (303)
                                          +.+|...|.+++|  ++.++++++.|+.|++||. .......   ..|...+.+++|+|.
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-~~~~~~~---~~~~~~v~~~~~~~~  153 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-GSLVYNL---QAHNASVWDAKVVSF  153 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-TEEEEEE---ECCSSCEEEEEEEET
T ss_pred             CCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-CcEEEec---ccCCCceeEEEEccC
Confidence                                2368889999999  5779999999999999993 2222222   356778999999883


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeEEEEcC-CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEE
Q 048118          137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAG-HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIH  214 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~  214 (303)
                      . ...+++++.|+.|++||  ..+....+.. |...+.+++|+|++. +++++.|+.|++||+++++.+..+. ....+.
T Consensus       154 ~-~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          154 S-ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY  229 (313)
T ss_dssp             T-TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             C-CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence            2 35899999999999999  4455666666 889999999999988 8999999999999999999888875 567899


Q ss_pred             EEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118          215 ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       215 ~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      +++|+|++.+++++.|+.|++||+++++.+..+..                    +...+.+++|+|+++ +++++.||.
T Consensus       230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          230 CIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--------------------PAISIWSVDCMSNGD-IIVGSSDNL  288 (313)
T ss_dssp             EEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--------------------SSSCEEEEEECTTSC-EEEEETTSC
T ss_pred             EEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--------------------cCceEEEEEEccCCC-EEEEeCCCc
Confidence            99999999888888999999999998877655432                    223467899999998 667999999


Q ss_pred             EEEEecc
Q 048118          295 IRVWGIG  301 (303)
Q Consensus       295 v~~w~~~  301 (303)
                      |++|++.
T Consensus       289 i~iw~~~  295 (313)
T 3odt_A          289 VRIFSQE  295 (313)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            9999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.3e-35  Score=247.72  Aligned_cols=272  Identities=18%  Similarity=0.278  Sum_probs=204.2

Q ss_pred             ccccccceeeeecCCC---CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC----Cc-------
Q 048118           11 MRAHTDMVTAIATPID---NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD----GQ-------   76 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~---~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~-------   76 (303)
                      .++|.+.|++++|+|.   +...+++++.++.|++|++...+............+...+.++.++++    +.       
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            5589999999999984   455677777778999999975543222222222335667777777766    22       


Q ss_pred             -----------------eecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeee-eecCCCCccceEEEEEcCCC
Q 048118           77 -----------------FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYT-IQEGDAHTEWVSCVRFSPNT  137 (303)
Q Consensus        77 -----------------~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~  137 (303)
                                       +.+|...|.+++|+| ++.+|++++.|+.|++||+....... ......|...|.+++|+|++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence                             347999999999999 89999999999999999986543322 22224678899999999975


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeEEE----------------------------EcCCCCCeeEEEECCCCCEEEEEeC
Q 048118          138 LQPTIVSASWDRTVKVWNLSNCKLRAT----------------------------LAGHTGYVNTVAVSPDGSLCASGGK  189 (303)
Q Consensus       138 ~~~~~~~~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~  189 (303)
                        ..+++++.|+.|++||+++++....                            ...|...|.+++|+  +++|++++.
T Consensus       174 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  249 (366)
T 3k26_A          174 --EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC  249 (366)
T ss_dssp             --SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred             --CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence              5799999999999999987654322                            23388999999998  679999999


Q ss_pred             CCeEEEEeCCCCce--------------EEEec-CCCeEEEEEEcCC--CeEEEE-EcCCcEEEEeCCCCceeeeeeecc
Q 048118          190 DGVILLWDLAEGKR--------------LYSLD-AGAVIHALCFSPN--RYWLCA-ATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       190 d~~v~iwd~~~~~~--------------~~~~~-~~~~v~~~~~s~~--~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      |+.|++||+++++.              +..+. ....+.+++|+|+  +.++++ +.||.|++||+++++......   
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---  326 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC---  326 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE---
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc---
Confidence            99999999987643              33332 3456788899998  876665 568999999998875432111   


Q ss_pred             ccccccccCccceeecccc--ceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          252 KTEAEKSEATTATTTIKKK--NIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                                   ..+..+  ...+.+++|+|++++|++|+.||.|++||+.+
T Consensus       327 -------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          327 -------------TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             -------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             -------------eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence                         112222  45678999999999999999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-34  Score=241.06  Aligned_cols=273  Identities=18%  Similarity=0.272  Sum_probs=199.6

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+++|.+.|++++|+|++ ++|++|+.|++|++|++........ ..                  ..+.+|...|.+++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~-~~------------------~~~~~~~~~v~~~~   64 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWE-LS------------------DSWRAHDSSIVAID   64 (351)
T ss_dssp             CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEE-EE------------------EEEECCSSCEEEEE
T ss_pred             ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcce-ec------------------ceeccCCCcEEEEE
Confidence            4578999999999999864 6899999999999999875432110 00                  13457999999999


Q ss_pred             Eee--CCCEEEEEeCCCcEEEEecCCcee-------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           89 FSI--DNRQIVSASRDRTIKLWNTLGECK-------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        89 ~~~--~~~~l~t~~~d~~i~vw~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      |+|  ++.+|++++.|+.|++||+.....       ........|...|.+++|+|+.....+++++.|+.|++||++++
T Consensus        65 ~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           65 WASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             EcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence            999  599999999999999999864311       12233346788899999999721257999999999999999776


Q ss_pred             eeEEEE-------------cCCCCCeeEEEECCC---CCEEEEEeCCCeEEEEeCCCCce--EEEec-CCCeEEEEEEcC
Q 048118          160 KLRATL-------------AGHTGYVNTVAVSPD---GSLCASGGKDGVILLWDLAEGKR--LYSLD-AGAVIHALCFSP  220 (303)
Q Consensus       160 ~~~~~~-------------~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~v~~~~~s~  220 (303)
                      +....+             ..|...+.+++|+|+   +..+++++.|+.+.+|+...++.  +..+. ....|.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p  224 (351)
T 3f3f_A          145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP  224 (351)
T ss_dssp             TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC
T ss_pred             HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC
Confidence            532221             257788999999997   89999999999998888877664  44443 467899999999


Q ss_pred             CC----eEE-EEEcCCcEEEEeCCCCceeeeeeeccccc--------------------------cccccCccceeeccc
Q 048118          221 NR----YWL-CAATEQSIKIWDLESKSIVEDLKVDLKTE--------------------------AEKSEATTATTTIKK  269 (303)
Q Consensus       221 ~~----~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~  269 (303)
                      ++    .++ +++.|+.|++||++.+.............                          ............+..
T Consensus       225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred             CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence            97    544 55679999999987653221110000000                          000000112334456


Q ss_pred             cceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          270 KNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       270 ~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |...+++++|+|++++|++|+.||.|++|++.
T Consensus       305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             TSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            67778999999999999999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-34  Score=246.93  Aligned_cols=266  Identities=15%  Similarity=0.230  Sum_probs=211.3

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEc----ccCcc-----ccceeeeeecC------CCcceEEEEeCCCC
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHL----TKEEK-----TYGVARRRLTG------HSHFVQDVVLSSDG   75 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~----~~~~~-----~~~~~~~~~~~------~~~~i~~~~~~~~~   75 (303)
                      .+.|.+.|++++|+|++..+|++|+.|+.|++|++    .....     ........+..      |...|.++.++|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            45566899999999986559999999999999999    54431     11111111222      56789999999876


Q ss_pred             ce-----------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccc-----
Q 048118           76 QF-----------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEW-----  127 (303)
Q Consensus        76 ~~-----------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-----  127 (303)
                      .+                       .+|...|.+++|+|++.+|++++.|+.|++|++.........  ..+...     
T Consensus       121 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~  198 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF--ELKETGGSSIN  198 (425)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE--CCC--------
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eccccCcccee
Confidence            42                       368899999999999999999999999999998654332211  222233     


Q ss_pred             ----------eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEe
Q 048118          128 ----------VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD  197 (303)
Q Consensus       128 ----------i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  197 (303)
                                +.++.|+|++   .+++++.++.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             -------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             eccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                      7788898864   689999999999999999888888999999999999999999999999999999999


Q ss_pred             CCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEE
Q 048118          198 LAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS  276 (303)
Q Consensus       198 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (303)
                      +++++.+..+. ....+.+++|+|++.+++++.++.|++||+++++.+..+.                    .+...+.+
T Consensus       276 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~~~~i~~  335 (425)
T 1r5m_A          276 GGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI--------------------VDGVPIFA  335 (425)
T ss_dssp             SSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE--------------------CTTCCEEE
T ss_pred             CCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc--------------------cCCccEEE
Confidence            99888777775 5678999999999966677789999999999887665433                    22335678


Q ss_pred             EEEcCCCCEEEEeecCCeEEEEecc
Q 048118          277 LNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       277 ~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++|+|++.+|++|+.||.|++||+.
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECC
Confidence            9999999999999999999999984

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-35  Score=254.52  Aligned_cols=290  Identities=13%  Similarity=0.198  Sum_probs=205.3

Q ss_pred             ecccc-cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc-ceeeeeecCCCcceEEEEeCCCCcee------
Q 048118            7 LKGTM-RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY-GVARRRLTGHSHFVQDVVLSSDGQFV------   78 (303)
Q Consensus         7 ~~~~~-~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~------   78 (303)
                      ++.++ ++|.+.|++++|+|.++.+|+||+.|++|++|++...+... ......+ .|...|.++.+++++.+.      
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            44556 88999999999998335799999999999999987522111 0011122 477888889888865421      


Q ss_pred             -------------------------------c--ccCCEEEEE--EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCC
Q 048118           79 -------------------------------G--HTKDVLSVA--FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA  123 (303)
Q Consensus        79 -------------------------------~--h~~~i~~i~--~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~  123 (303)
                                                     .  +...+.++.  +++++.++++++.|+.|++||+.............
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence                                           0  333444444  44678899999999999999986543322222223


Q ss_pred             CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc-CCCCCeeEEEECC----CCCEEEEEeCCCeEEEEeC
Q 048118          124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-GHTGYVNTVAVSP----DGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       124 ~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~l~~~~~d~~v~iwd~  198 (303)
                      |...|.+++|+|++  ..+++|+.||.|++||++++++...+. .|...|++++++|    ++++|++++.||+|++||+
T Consensus       213 h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          213 RHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             GGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence            77889999999985  589999999999999999999888876 6778999996654    5779999999999999999


Q ss_pred             CCCceEEEec---------------------------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118          199 AEGKRLYSLD---------------------------AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       199 ~~~~~~~~~~---------------------------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      ++++.+..+.                           ....|.+++|+++..+++++.|+.|++||+++++....+....
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence            9988776653                           2234788899944345556679999999999887765554211


Q ss_pred             cccc---------------cc--ccCccceeeccccceeEEEEEEcCC--CCEEEEeecCCeEEEEe
Q 048118          252 KTEA---------------EK--SEATTATTTIKKKNIYCTSLNWSVD--GSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       252 ~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~gs~Dg~v~~w~  299 (303)
                      ....               ..  ............|...+++++|+++  +.+|++|+.||.|++|+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            0000               00  0000001112236677889999988  77999999999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=242.22  Aligned_cols=289  Identities=12%  Similarity=0.154  Sum_probs=208.5

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecC---CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC---Cc---
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASR---DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD---GQ---   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~---   76 (303)
                      .+...+++|.+.|++++|+|++..++++|+.   |+.|++|++......    .....+|...|.++.++++   +.   
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----LLREIEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----EEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----ceeeecccCcEEEEEEcCCCCCCceEE
Confidence            4445578899999999999987777778877   999999999754321    1112246677888888876   22   


Q ss_pred             ----------------------eecccCCEEEEEE------eeCCCEEEEEeCCCcEEEEecCCce--eeeeecCCC-Cc
Q 048118           77 ----------------------FVGHTKDVLSVAF------SIDNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDA-HT  125 (303)
Q Consensus        77 ----------------------~~~h~~~i~~i~~------~~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~-~~  125 (303)
                                            +.+|.+.|.+++|      +|++.+|++++.|+.|++||+....  ...+..... ..
T Consensus        85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  164 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK  164 (357)
T ss_dssp             EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred             EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence                                  3478899999955      6789999999999999999986532  222221111 23


Q ss_pred             cceEEEE----EcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC---CCCEEEEEeCCCeEEEEeC
Q 048118          126 EWVSCVR----FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP---DGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       126 ~~i~~~~----~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~  198 (303)
                      ..+.+++    |+|++  ..+++++.|+.|++||+++++... ...|...|.+++|+|   ++++|++++.||.|++||+
T Consensus       165 ~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            4688888    55654  589999999999999999888754 356788999999999   8999999999999999999


Q ss_pred             CCCceEEEe------cCCCeEEEEEEcCCCe-EE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccc
Q 048118          199 AEGKRLYSL------DAGAVIHALCFSPNRY-WL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKK  270 (303)
Q Consensus       199 ~~~~~~~~~------~~~~~v~~~~~s~~~~-~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (303)
                      ++++.+..+      .....+.+++|+|++. ++ +++.|+.|++||++.+.........-.... ..........+..+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~  320 (357)
T 3i2n_A          242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG-VAGSVSLLQNVTLS  320 (357)
T ss_dssp             EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-CCCEEEEEEEEECC
T ss_pred             cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc-cccccceeeccccC
Confidence            876544333      3567899999999976 44 556799999999976543221110000000 00000122344556


Q ss_pred             ceeEEEEEEcCCCCEEE-EeecCCeEEEEeccc
Q 048118          271 NIYCTSLNWSVDGSTLF-SGYTDGVIRVWGIGR  302 (303)
Q Consensus       271 ~~~~~~~~~sp~~~~l~-~gs~Dg~v~~w~~~~  302 (303)
                      ...+.+++|+|++++|+ +|+.||.|++||+.+
T Consensus       321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            66789999999999998 899999999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=240.80  Aligned_cols=281  Identities=18%  Similarity=0.240  Sum_probs=207.6

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+++|.+.|++++|+|.++++|++|+.|+.|++|++............          ...........+|...|.+++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~  106 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----------AVCSIGRDHPDVHRYSVETVQ  106 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----------EEEEECTTCTTCCSSCEEEEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----------ccccccccccccCCCcEEEEE
Confidence            4577899999999999934579999999999999999754322111100          000011122346899999999


Q ss_pred             Eee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC-CCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           89 FSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL-QPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        89 ~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      |+| ++.++++++.|+.|++||+..........   +...+.++.++|... ...+++++.++.|++||+++++....+.
T Consensus       107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             ECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             EccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence            999 77899999999999999987544332221   455688899988542 2478999999999999999998888999


Q ss_pred             CCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCc-eEEEe----------------cCCCeEEEEEEcCCCeEE-EE
Q 048118          167 GHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGK-RLYSL----------------DAGAVIHALCFSPNRYWL-CA  227 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~-~~~~~----------------~~~~~v~~~~~s~~~~~l-~~  227 (303)
                      .|...|.+++|+|+++ +|++++.||.|++||++.+. .+..+                .....+.+++|+|++.++ ++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            9999999999999998 58999999999999998765 33332                234679999999998655 45


Q ss_pred             EcCCcEEEEeCCCCceeeeeeecccccc---------------------------ccccCccceeeccccceeEEEEEEc
Q 048118          228 ATEQSIKIWDLESKSIVEDLKVDLKTEA---------------------------EKSEATTATTTIKKKNIYCTSLNWS  280 (303)
Q Consensus       228 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~s  280 (303)
                      +.|+.|++||+++++.............                           ...........+..+...+.+++|+
T Consensus       264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s  343 (408)
T 4a11_B          264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ  343 (408)
T ss_dssp             ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred             cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc
Confidence            5799999999988765432211100000                           0001112233445667778999999


Q ss_pred             CCCCEEEEeecCCeEEEEeccc
Q 048118          281 VDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       281 p~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      |++++|++|+.||.|++|++..
T Consensus       344 ~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          344 SNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             TTTTEEEEEETTSCEEEEEECC
T ss_pred             CCCCEEEEECCCCeEEEEeCCC
Confidence            9999999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-35  Score=250.28  Aligned_cols=248  Identities=18%  Similarity=0.176  Sum_probs=186.7

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      +.|.+.|++++|+|++ ++|++|+.|+.|++|++.....   ..                  ...+.+|.+.|.+++|+|
T Consensus         8 ~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~---~~------------------~~~~~~h~~~v~~~~~s~   65 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGW---KH------------------ARTFSDHDKIVTCVDWAP   65 (377)
T ss_dssp             EECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEE---EE------------------CCCBCCCSSCEEEEEECT
T ss_pred             ecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCce---EE------------------EEEEecCCceEEEEEEeC
Confidence            3456789999999975 6999999999999999864310   00                  123567999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce---eEEEEcC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK---LRATLAG  167 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~---~~~~~~~  167 (303)
                      ++.+|++++.|+.|++||+.... .........|...|.+++|+|++  ..+++++.|+.|++||+++++   ....+..
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKR  143 (377)
T ss_dssp             TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence            99999999999999999986543 11223334678889999999976  468999999999999998776   4667777


Q ss_pred             -CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC------------------CceEEEecCCCeEEEEEEcCCCeEE-EE
Q 048118          168 -HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE------------------GKRLYSLDAGAVIHALCFSPNRYWL-CA  227 (303)
Q Consensus       168 -~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l-~~  227 (303)
                       |...|++++|+|++++|++++.|++|++||++.                  ++.+..+.....|.+++|+|++.++ ++
T Consensus       144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  223 (377)
T 3dwl_C          144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA  223 (377)
T ss_dssp             SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE
Confidence             999999999999999999999999999999852                  3444455556789999999998655 45


Q ss_pred             EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          228 ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       228 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +.|+.|++||+++++.....                ...+..+...+.+++|+|++++|++|+.|+.+ +|+.
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          224 GHDSSVTIAYPSAPEQPPRA----------------LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             ETTTEEC-CEECSTTSCEEE----------------CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             eCCCcEEEEECCCCCCccee----------------eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            67999999999887641110                01123345567889999999999999877777 6654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=234.22  Aligned_cols=223  Identities=22%  Similarity=0.344  Sum_probs=186.5

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------   76 (303)
                      .+...+.+|...|.++.+++++ .++++++.|++|++||+....     ....+..+...+..+.++|+++         
T Consensus        71 ~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg  144 (321)
T 3ow8_A           71 DLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAFSPDSQYLATGTHVG  144 (321)
T ss_dssp             EEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE-----EEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred             eeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            3445689999999999999875 689999999999999987543     2333445555566677777653         


Q ss_pred             ---------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCE
Q 048118           77 ---------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT  141 (303)
Q Consensus        77 ---------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  141 (303)
                                     +..|...|.+++|+|++++|++++.|+.|++||+.....  +.....|...|.+++|+|++  ..
T Consensus       145 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~--~~  220 (321)
T 3ow8_A          145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDS--QL  220 (321)
T ss_dssp             EEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTS--CE
T ss_pred             cEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCC--CE
Confidence                           235677899999999999999999999999999865432  22234678889999999986  57


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSP  220 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~  220 (303)
                      +++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||+++++++.++. ....|.+++|+|
T Consensus       221 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999988874 467899999999


Q ss_pred             CCeEE-EEEcCCcEEEEeC
Q 048118          221 NRYWL-CAATEQSIKIWDL  238 (303)
Q Consensus       221 ~~~~l-~~~~~~~i~iwd~  238 (303)
                      ++..| +++.|+.|++||.
T Consensus       301 ~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TSSEEEEEETTCCEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEeC
Confidence            98654 5567999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-34  Score=246.72  Aligned_cols=265  Identities=17%  Similarity=0.283  Sum_probs=209.6

Q ss_pred             cccceeeeecCCCCCcEEEEe----------cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------
Q 048118           14 HTDMVTAIATPIDNSDMIVTA----------SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------   76 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~----------s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------   76 (303)
                      +...|.+++|+|++..++++|          +.|++|++|++......  ..... ..|...|.++.+++++.       
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KPIAS-LQVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SCSCC-CCCSSCEEEEEECSSSSCEEEEES
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--cEEEE-EecCCceEEEEECCCCCeEEEEcc
Confidence            345799999999876799999          89999999998754321  01111 23566788888877653       


Q ss_pred             ---------------------eecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCce-------eeeeecCCCCccc
Q 048118           77 ---------------------FVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGEC-------KYTIQEGDAHTEW  127 (303)
Q Consensus        77 ---------------------~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~-------~~~~~~~~~~~~~  127 (303)
                                           +.+|.+.|.+++|+|+ +.+|++++.|+.|++||+....       .........|...
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence                                 2368889999999998 8999999999999999986543       1112223457788


Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC------CCCeeEEEECCCC-CEEEEEeCCC---eEEEEe
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH------TGYVNTVAVSPDG-SLCASGGKDG---VILLWD  197 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~d~---~v~iwd  197 (303)
                      |.+++|+|++ ...+++++.|+.|++||+++++....+..+      ...+.+++|+|++ .++++++.|+   .|++||
T Consensus       168 v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d  246 (416)
T 2pm9_A          168 VISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD  246 (416)
T ss_dssp             CCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred             eeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence            9999999984 257999999999999999999888888776      7889999999987 6899999998   999999


Q ss_pred             CCCC-ceEEEec--CCCeEEEEEEcC-CCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccce
Q 048118          198 LAEG-KRLYSLD--AGAVIHALCFSP-NRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI  272 (303)
Q Consensus       198 ~~~~-~~~~~~~--~~~~v~~~~~s~-~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (303)
                      ++++ +.+..+.  ....+.+++|+| ++.++ +++.|+.|++||+++++.+..+.                    .+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--------------------~~~~  306 (416)
T 2pm9_A          247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--------------------ARGN  306 (416)
T ss_dssp             TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--------------------CSSS
T ss_pred             CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--------------------CCCC
Confidence            9986 4555554  567899999999 76554 55679999999999887665443                    2333


Q ss_pred             eEEEEEEcCCC-CEEEEeecCCeEEEEeccc
Q 048118          273 YCTSLNWSVDG-STLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       273 ~~~~~~~sp~~-~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .+.+++|+|++ .+|++++.||.|++|++..
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             ceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            45679999999 7999999999999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=249.15  Aligned_cols=268  Identities=17%  Similarity=0.273  Sum_probs=191.5

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc-----------
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT-----------   81 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~-----------   81 (303)
                      .|.+.|++++|+|++ ++||+|+.||.|++|++..........      ... ...     ...+.+|.           
T Consensus        26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~------~~~-~~~-----~~~~~~h~~~~~~~~~~~~   92 (447)
T 3dw8_B           26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHS------RGE-YNV-----YSTFQSHEPEFDYLKSLEI   92 (447)
T ss_dssp             CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCC------CCC-EEE-----EEEEECCCCEEEGGGTEEE
T ss_pred             cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCccc------ccc-eeE-----ecccccccccccccccccc
Confidence            367899999999864 799999999999999987543110000      000 000     01345666           


Q ss_pred             -CCEEEEEEeeCC--CEEEEEeCCCcEEEEecCCceee--------------------------------------eeec
Q 048118           82 -KDVLSVAFSIDN--RQIVSASRDRTIKLWNTLGECKY--------------------------------------TIQE  120 (303)
Q Consensus        82 -~~i~~i~~~~~~--~~l~t~~~d~~i~vw~~~~~~~~--------------------------------------~~~~  120 (303)
                       +.|.+++|+|++  .+|++++.|+.|++|++......                                      ....
T Consensus        93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B           93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence             889999999998  79999999999999997432110                                      0011


Q ss_pred             CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-ceeEE-------EEcCCCCCeeEEEECCCC-CEEEEEeCCC
Q 048118          121 GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRA-------TLAGHTGYVNTVAVSPDG-SLCASGGKDG  191 (303)
Q Consensus       121 ~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~  191 (303)
                      ...|...|.+++|+|++  ..+++| .|+.|++||+.. .+...       .+.+|...|++++|+|++ ++|++++.||
T Consensus       173 ~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          173 ANAHTYHINSISINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             CSCCSSCCCEEEECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             ccCCCcceEEEEEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence            34688889999999975  478887 899999999984 33333       255789999999999998 8999999999


Q ss_pred             eEEEEeCCCCce----EEEecCCC-------------eEEEEEEcCCCeEEEEEcCCcEEEEeCCC-Cceeeeeeecccc
Q 048118          192 VILLWDLAEGKR----LYSLDAGA-------------VIHALCFSPNRYWLCAATEQSIKIWDLES-KSIVEDLKVDLKT  253 (303)
Q Consensus       192 ~v~iwd~~~~~~----~~~~~~~~-------------~v~~~~~s~~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~  253 (303)
                      +|++||+++++.    +..+....             .|.+++|+|++.++++++++.|++||++. ++.+..+..+...
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence            999999998875    55554432             89999999999888777779999999987 6655544432100


Q ss_pred             ccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ......    . .-......+..++|+|++++|++|+.||.|++||+.
T Consensus       330 ~~~l~~----~-~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          330 RSKLCS----L-YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             TTTHHH----H-HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cccccc----c-ccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence            000000    0 000000012348899999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-33  Score=242.43  Aligned_cols=241  Identities=21%  Similarity=0.366  Sum_probs=197.9

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      |...|++++|+|++ ++|++|+.||.|++|++......     .                  .+.+|...|.+++|  ++
T Consensus       133 ~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~-----~------------------~~~~~~~~v~~~~~--~~  186 (401)
T 4aez_A          133 ESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKL-----R------------------TMAGHQARVGCLSW--NR  186 (401)
T ss_dssp             TTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE-----E------------------EECCCSSCEEEEEE--ET
T ss_pred             CCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEE-----E------------------EecCCCCceEEEEE--CC
Confidence            78899999999864 68999999999999998653211     1                  23468889999999  45


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCee
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN  173 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  173 (303)
                      .++++++.|+.|++||+..... .......|...|.+++|+|++  ..+++++.|+.|++||+++++....+..|...|.
T Consensus       187 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  263 (401)
T 4aez_A          187 HVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDG--LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK  263 (401)
T ss_dssp             TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC
T ss_pred             CEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcCCC--CEEEEEeCCCeEEEccCCCCCccEEecCCcceEE
Confidence            7999999999999999863221 122223578889999999975  5899999999999999999998888999999999


Q ss_pred             EEEECCCCC-EEEEEe--CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE---cCCcEEEEeCCCCceeeee
Q 048118          174 TVAVSPDGS-LCASGG--KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA---TEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       174 ~~~~~~~~~-~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~~i~iwd~~~~~~~~~~  247 (303)
                      +++|+|++. ++++++  .|+.|++||+++++.+..+.....+.+++|+|++..++++   .++.|++||+++++.....
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence            999999764 666655  7999999999999999888888899999999998777653   5899999999876554332


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .                  +..+...+.+++|+|++++|++|+.||.|++|++.
T Consensus       344 ~------------------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          344 D------------------IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             E------------------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             E------------------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            2                  22344456789999999999999999999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-34  Score=246.41  Aligned_cols=271  Identities=16%  Similarity=0.188  Sum_probs=191.6

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ..+..+.+|.+.|++++|+|++ ++|++++.|++|++|++.......  .                  ...+.+|...|.
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~--~------------------~~~~~~~~~~v~  104 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWK--Q------------------TLVLLRLNRAAT  104 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CCC--C------------------EEECCCCSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCcee--e------------------eeEecccCCceE
Confidence            4566789999999999999875 689999999999999987543000  0                  012456889999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCC-CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC------
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDA-HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS------  157 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~------  157 (303)
                      +++|+|++.+|++++.|+.|++||+...... ....... |...|.+++|+|++  ..+++++.|+.|++||+.      
T Consensus       105 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~  182 (377)
T 3dwl_C          105 FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDA  182 (377)
T ss_dssp             EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-
T ss_pred             EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCC
Confidence            9999999999999999999999998654311 1111223 78899999999975  589999999999999985      


Q ss_pred             ------------CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce----EEEec-CCCeEEEEEEcC
Q 048118          158 ------------NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR----LYSLD-AGAVIHALCFSP  220 (303)
Q Consensus       158 ------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~-~~~~v~~~~~s~  220 (303)
                                  .+++...+ +|...|++++|+|++++|++++.|++|++||+++++.    +..+. ....+.+++|+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~  261 (377)
T 3dwl_C          183 KPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN  261 (377)
T ss_dssp             CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE
T ss_pred             Cccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC
Confidence                        24455556 8999999999999999999999999999999998876    44443 356799999999


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCce--eeeeeecccccc-----------ccccCc-------------------cceeecc
Q 048118          221 NRYWLCAATEQSIKIWDLESKSI--VEDLKVDLKTEA-----------EKSEAT-------------------TATTTIK  268 (303)
Q Consensus       221 ~~~~l~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~-----------~~~~~~-------------------~~~~~~~  268 (303)
                      ++.+++++.++.+.+|+......  ...+........           ......                   .......
T Consensus       262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  341 (377)
T 3dwl_C          262 ESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT  341 (377)
T ss_dssp             TTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred             CCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence            99999999988888998764321  111111000000           000000                   0000112


Q ss_pred             ccceeEEEEEEcCCC-C---EEEEeecCCeEEEEec
Q 048118          269 KKNIYCTSLNWSVDG-S---TLFSGYTDGVIRVWGI  300 (303)
Q Consensus       269 ~~~~~~~~~~~sp~~-~---~l~~gs~Dg~v~~w~~  300 (303)
                      .|...++++.+.+.. .   .|+||+.||.|++||+
T Consensus       342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            256667888865543 3   6999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8e-33  Score=232.50  Aligned_cols=259  Identities=19%  Similarity=0.313  Sum_probs=209.3

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---------------
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---------------   78 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------   78 (303)
                      |.+.|.+++++|++ ++++++..++.+..|.....     .......+|...|.++.+++++++.               
T Consensus         8 ~~~~v~~~~~s~dg-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADG-QMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSS-CEEECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTS
T ss_pred             cCCceeEEEECCCC-CEEEeecCCCcEeccccCCc-----cccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCC
Confidence            45789999999986 57777777776666643321     1122233577788888888776421               


Q ss_pred             -------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE
Q 048118           79 -------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA  145 (303)
Q Consensus        79 -------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  145 (303)
                                   +|...|.+++|+|+++++++++.|+.|++|+..............|...+.+++|+|++  ..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~  159 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS--KVCFSC  159 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS--SEEEEE
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC--CEEEEE
Confidence                         57889999999999999999999999999998654322222334567789999999975  579999


Q ss_pred             eCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE
Q 048118          146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL  225 (303)
Q Consensus       146 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  225 (303)
                      +.|+.|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||+++++.+..+.....+.+++|+|++.++
T Consensus       160 ~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999988888888889999999998766


Q ss_pred             EE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          226 CA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       226 ~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++ +.++.|++||+++++...                     +..+...+.+++|+|++++|++++.||.|++|++.
T Consensus       240 ~~~~~~~~i~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          240 AVGMESSNVEVLHVNKPDKYQ---------------------LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEE---------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEcCCCcEEEEECCCCCeEE---------------------EcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            55 568999999998765421                     12234457889999999999999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2e-33  Score=245.05  Aligned_cols=272  Identities=21%  Similarity=0.326  Sum_probs=204.5

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      ...+|.+.|++++|+|.++.+|++++.||.|++|++........     ..+.        ..+...+.+|...|.+++|
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~--------~~~~~~~~~h~~~v~~l~~  189 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----PSGE--------CQPDLRLRGHQKEGYGLSW  189 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----TTCC--------CCCSEEEECCSSCCCCEEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----cccc--------CCCcEEecCCCCCeEEEEe
Confidence            46779999999999997678999999999999999975321100     0000        0111245689999999999


Q ss_pred             eeCCC-EEEEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc---e
Q 048118           90 SIDNR-QIVSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC---K  160 (303)
Q Consensus        90 ~~~~~-~l~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~---~  160 (303)
                      +|++. +|++|+.|+.|++|++.....     ........|...|.+++|+|.. ...+++++.|+.|++||+++.   +
T Consensus       190 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          190 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSS
T ss_pred             CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCc
Confidence            99988 999999999999999865211     1122234678889999999954 358899999999999999876   5


Q ss_pred             eEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCC-CceEEEec-CCCeEEEEEEcCCC-e-EEEEEcCCcEEE
Q 048118          161 LRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE-GKRLYSLD-AGAVIHALCFSPNR-Y-WLCAATEQSIKI  235 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~-~-~l~~~~~~~i~i  235 (303)
                      ....+..|...|++++|+|+++ +|++|+.||+|++||++. ++++..+. ....|.+++|+|++ . +++++.|+.|++
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            6677788999999999999887 688999999999999987 45566664 56789999999987 3 455667999999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                      ||++.........      ..............++...+.+++|+|+++ +|++++.||.|++|++.
T Consensus       349 wd~~~~~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          349 WDLSKIGEEQSTE------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEGGGTTCCCCHH------HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EeCCCCccccCcc------ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            9997632111000      000000112233445666789999999999 89999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-35  Score=258.50  Aligned_cols=246  Identities=13%  Similarity=0.133  Sum_probs=181.7

Q ss_pred             cccceeeeecCCCC-C-------cEEEE-------------------ecCCCcEEEEEcccCccccceeeeeecCCCcce
Q 048118           14 HTDMVTAIATPIDN-S-------DMIVT-------------------ASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV   66 (303)
Q Consensus        14 h~~~v~~v~~~~~~-~-------~~~~t-------------------~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i   66 (303)
                      +.+.|.+++|+|.. +       .+||+                   ++.|++|+||++...+.... ..          
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~----------  200 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KV----------  200 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EE----------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EE----------
Confidence            45788999999864 1       35554                   66889999999864321100 00          


Q ss_pred             EEEEeCCCCceecccCCEEEEEEeeC------CCEEEEEeCCCcEEEEecCCceee---------eeecCCCCccceEEE
Q 048118           67 QDVVLSSDGQFVGHTKDVLSVAFSID------NRQIVSASRDRTIKLWNTLGECKY---------TIQEGDAHTEWVSCV  131 (303)
Q Consensus        67 ~~~~~~~~~~~~~h~~~i~~i~~~~~------~~~l~t~~~d~~i~vw~~~~~~~~---------~~~~~~~~~~~i~~~  131 (303)
                              ..+.+|.+.|.+++|+|+      +.+||+++.|++|++||+......         .......|...|.++
T Consensus       201 --------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv  272 (524)
T 2j04_B          201 --------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF  272 (524)
T ss_dssp             --------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE
T ss_pred             --------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE
Confidence                    013456788999999986      579999999999999998543110         011224577889999


Q ss_pred             EEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEE--EECCCC-CEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118          132 RFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTV--AVSPDG-SLCASGGKDGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~  207 (303)
                      +|+|+   ..+++|+.||+|++||++++ .+...+.+|...|+++  .|+|++ ++|++++.|++|++||+++++.+..+
T Consensus       273 ~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~  349 (524)
T 2j04_B          273 DFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT  349 (524)
T ss_dssp             EESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE
T ss_pred             EecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc
Confidence            99985   37999999999999999865 3456688999999999  568887 89999999999999999987655443


Q ss_pred             cC---CCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          208 DA---GAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       208 ~~---~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                      ..   ...+.+++|+|++..+ +++.|+.|++||++++..+..                    +.+|...+++++|+|++
T Consensus       350 ~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--------------------l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          350 VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--------------------LVSRETTITAIGVSRLH  409 (524)
T ss_dssp             EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--------------------EEECSSCEEEEECCSSC
T ss_pred             ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--------------------eecCCCceEEEEeCCCC
Confidence            21   1347889999987555 455688999999987654332                    23355568899999999


Q ss_pred             CEEEEeecCCeEEEEecc
Q 048118          284 STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++|++|+.||+|++||+.
T Consensus       410 ~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          410 PMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CBCEEEETTTEEECCBSC
T ss_pred             CeEEEEECCCEEEEEech
Confidence            999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.7e-33  Score=236.59  Aligned_cols=259  Identities=10%  Similarity=0.045  Sum_probs=184.7

Q ss_pred             cceeeeecCCCCCcEEEEecCCC-------cEEEEEcccCccccc-----eeeeeecCCCcceEEEEeCCC---------
Q 048118           16 DMVTAIATPIDNSDMIVTASRDK-------SIIVWHLTKEEKTYG-----VARRRLTGHSHFVQDVVLSSD---------   74 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~-------~i~iw~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~---------   74 (303)
                      -+|++++|+|++ .+|++||.|.       .|++|++........     .....+..+...+.++.+..+         
T Consensus        15 ~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           15 YPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            479999999875 6899987654       599999865432111     111223444444444433221         


Q ss_pred             ----------Cc-----------------------eecccCCEEEEEEeeCCCEEEE--EeCCCcEEEEecCCceeeeee
Q 048118           75 ----------GQ-----------------------FVGHTKDVLSVAFSIDNRQIVS--ASRDRTIKLWNTLGECKYTIQ  119 (303)
Q Consensus        75 ----------~~-----------------------~~~h~~~i~~i~~~~~~~~l~t--~~~d~~i~vw~~~~~~~~~~~  119 (303)
                                +.                       ...+...+.+++|+|+|+++++  ++.|+.|+|||..........
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~  173 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI  173 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence                      00                       0123345788999999998764  457899999998654332222


Q ss_pred             cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE--EEcCCCCCeeEEEECCCCCEEEEEeCCC----eE
Q 048118          120 EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDG----VI  193 (303)
Q Consensus       120 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~v  193 (303)
                         .|...|.+++|+|++  ..+++++ ++.+++|+..+++...  ....|...|.+++|+|+++.+++++.|+    .+
T Consensus       174 ---~~~~~V~~v~fspdg--~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          174 ---ETRGEVKDLHFSTDG--KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             ---ECSSCCCEEEECTTS--SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred             ---CCCCceEEEEEccCC--ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence               245679999999986  4677776 4556666666655433  3456888899999999999999999887    68


Q ss_pred             EEEeCCCCceE----EEe-cCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeec
Q 048118          194 LLWDLAEGKRL----YSL-DAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTI  267 (303)
Q Consensus       194 ~iwd~~~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (303)
                      +.||+......    ..+ .....|.+++|+|++.+|++ +.|+.|++||+++++.+..+                   +
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-------------------~  308 (365)
T 4h5i_A          248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-------------------K  308 (365)
T ss_dssp             EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-------------------T
T ss_pred             eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-------------------c
Confidence            88998766432    222 34568999999999987765 56899999999988766432                   2


Q ss_pred             cccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          268 KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       268 ~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .+|...+++++|||||++|++||.|++||||++
T Consensus       309 ~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          309 QAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             TSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            456677899999999999999999999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-32  Score=230.65  Aligned_cols=225  Identities=26%  Similarity=0.425  Sum_probs=185.7

Q ss_pred             eeeecCCCcceEEEEeCCCCce------------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 048118           56 RRRLTGHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL  111 (303)
Q Consensus        56 ~~~~~~~~~~i~~~~~~~~~~~------------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~  111 (303)
                      ...+.+|...|.++.+++++++                        ..|...|.+++|+|++.++++++.|+.|++|++.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            4556778888888888877642                        3678889999999999999999999999999985


Q ss_pred             Ccee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC
Q 048118          112 GECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK  189 (303)
Q Consensus       112 ~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  189 (303)
                      ....  ........|...|.++.|++++   .+++++.|+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.
T Consensus       128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~  204 (340)
T 1got_B          128 TREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             TCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence            4311  1122234678889999999864   5899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeec
Q 048118          190 DGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTI  267 (303)
Q Consensus       190 d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (303)
                      |++|++||+++++.+..+. +...|.+++|+|++.+++ ++.|+.|++||+++++.+..+..                  
T Consensus       205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------------------  266 (340)
T 1got_B          205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH------------------  266 (340)
T ss_dssp             TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------------
T ss_pred             CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc------------------
Confidence            9999999999998888775 457899999999986655 55699999999998765543321                  


Q ss_pred             cccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          268 KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       268 ~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ......+.+++|+|++++|++|+.||.|++||+.
T Consensus       267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence            1112246789999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-32  Score=237.64  Aligned_cols=221  Identities=29%  Similarity=0.471  Sum_probs=188.9

Q ss_pred             eeecCCCcceEEEEeCCCCc------------------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC
Q 048118           57 RRLTGHSHFVQDVVLSSDGQ------------------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG  112 (303)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~------------------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~  112 (303)
                      ..+.+|...|.++.++|++.                        +.+|.+.|.+++|+|++.+|++|+.|+.|++||+..
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            34667889999999988753                        347999999999999999999999999999999865


Q ss_pred             ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCe
Q 048118          113 ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV  192 (303)
Q Consensus       113 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  192 (303)
                      ...  +.....|...|.+++|+|++  ..+++++.|+.|++||+.++.+...+.+|...|.++.++|++.+|++|+.|++
T Consensus       182 ~~~--~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          182 FEC--IRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             SCE--EECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             Cce--eEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            322  23345688899999999986  57999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEec-CCCeEEEEEEcCC--------------------C-eEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118          193 ILLWDLAEGKRLYSLD-AGAVIHALCFSPN--------------------R-YWLCAATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       193 v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~--------------------~-~~l~~~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      |++||+++++....+. ....|.+++|+|+                    + .+++++.|+.|++||+++++.+..+   
T Consensus       258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~---  334 (410)
T 1vyh_C          258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL---  334 (410)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred             EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE---
Confidence            9999999988877764 4678999999995                    3 3556667999999999988765433   


Q ss_pred             cccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                       .+|...+.+++|+|++++|++|+.||+|++||+.
T Consensus       335 -----------------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          335 -----------------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             -----------------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             -----------------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence                             2344567889999999999999999999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.7e-32  Score=238.42  Aligned_cols=243  Identities=23%  Similarity=0.374  Sum_probs=196.4

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+++|.+.|++|+|+|++ .+||+|+.|++|++|++.....     ..                  .+.+|...+.++++
T Consensus       142 ~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~-----~~------------------~~~~h~~~v~~~s~  197 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR-----LR------------------NMTSHSARVGSLSW  197 (420)
T ss_dssp             ECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-----EE------------------EECCCSSCEEEEEE
T ss_pred             EecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcE-----EE------------------EEeCCCCceEEEee
Confidence            467888899999999875 6999999999999999865321     11                  24568888888776


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce----eEEEE
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK----LRATL  165 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~----~~~~~  165 (303)
                      +  +.++++|+.|+.+++|+....... ......|...+..+.++|++  ..+++++.|+.+++|+..+++    .....
T Consensus       198 ~--~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~~~~~~~~~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~  272 (420)
T 4gga_A          198 N--SYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTF  272 (420)
T ss_dssp             E--TTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred             C--CCEEEEEeCCCceeEeeeccccee-eEEecccccceeeeeecCCC--CeeeeeeccccceEEeeccccccceeeeee
Confidence            4  679999999999999997543222 22224677889999999986  579999999999999997654    34567


Q ss_pred             cCCCCCeeEEEECCCCC-EEEE--EeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-E--cCCcEEEEeCC
Q 048118          166 AGHTGYVNTVAVSPDGS-LCAS--GGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-A--TEQSIKIWDLE  239 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~-~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~--~~~~i~iwd~~  239 (303)
                      ..|...|.+++|+|.+. .+++  |+.|++|++||+.+++.+..+.....+.++.|+|++..+++ +  .|+.|++||++
T Consensus       273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            78899999999999654 5555  45799999999999999988888888999999998755543 3  58999999999


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++.+..+                    .+|...|++++|+|+|.+|+||+.||+|++||+.
T Consensus       353 ~~~~v~~l--------------------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          353 TMAKVAEL--------------------KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             TCCEEEEE--------------------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCcEEEEE--------------------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            88766543                    3456678899999999999999999999999984

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=260.58  Aligned_cols=256  Identities=19%  Similarity=0.306  Sum_probs=197.0

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ..+++|.+.|++++|+|++ ++|++|+.||+|++|++.....   ...                  ..+.+|.+.|.+++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~---~~~------------------~~l~~h~~~V~~l~   60 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETH---KLI------------------DTLTGHEGPVWRVD   60 (753)
T ss_dssp             -----CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEE---EEE------------------EEECCCSSCEEEEE
T ss_pred             eecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCC---ccc------------------eeccCCcCceEEEE
Confidence            4688999999999999875 6899999999999999863211   111                  13457999999999


Q ss_pred             EeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc--eeEEE
Q 048118           89 FSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC--KLRAT  164 (303)
Q Consensus        89 ~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~--~~~~~  164 (303)
                      |+++  +.++++|+.|+.|++||+.............|...|.+++|+|+.....+++|+.||.|++||+.++  .....
T Consensus        61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             ecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence            9988  8999999999999999986653333344456888999999999732258999999999999999876  34456


Q ss_pred             EcCCCCCeeEEEECC-------------CCCEEEEEeCCCeEEEEeCCCCc----eEEEec-CCCeEEEEEEcCC---Ce
Q 048118          165 LAGHTGYVNTVAVSP-------------DGSLCASGGKDGVILLWDLAEGK----RLYSLD-AGAVIHALCFSPN---RY  223 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~s~~---~~  223 (303)
                      +.+|...|.+++|+|             ++.+|++|+.||+|++||++++.    .+..+. +...|.+++|+|+   +.
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            778999999999999             58999999999999999998764    333443 4678999999999   76


Q ss_pred             EEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          224 WLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       224 ~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++ ++.||.|++||+++++......               ......+...+++++|+|++.+|++|+.||.|++|++.
T Consensus       221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~---------------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          221 YLASVSQDRTCIIWTQDNEQGPWKKT---------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEEESSSCEEEEEESSSSSCCBCC---------------BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEEEecCCEEEEecCCCCCCcceeE---------------EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            665 4569999999998754211100               01112234456789999999999999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.9e-33  Score=235.85  Aligned_cols=228  Identities=20%  Similarity=0.223  Sum_probs=181.2

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-------------
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-------------   76 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------   76 (303)
                      ...+|.+.|++++|+|++  .+++++.|++|++||+...+... .......+|...|.++.++|+++             
T Consensus        89 ~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLL-VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             EEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------C-CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeE-EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            456788899999999864  57788999999999987643221 12233457888999999999864             


Q ss_pred             -----------eecccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE
Q 048118           77 -----------FVGHTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS  144 (303)
Q Consensus        77 -----------~~~h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  144 (303)
                                 +.+|...|.+++|++++. ++++++.|+.|++||+.............+...+.+++|+|+. ...+++
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~~la~  244 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK-DDTFAC  244 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS-TTEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc-cceEEE
Confidence                       347999999999999875 7899999999999998654322222233456779999999975 357889


Q ss_pred             EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC-CC
Q 048118          145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP-NR  222 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~  222 (303)
                      |+.|+.|++||++++++...+.+|...|++++|+|++ ++|++|+.|++|++||+++++.+..+.+...|++++|+| ++
T Consensus       245 g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~  324 (357)
T 4g56_B          245 GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDH  324 (357)
T ss_dssp             EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSST
T ss_pred             eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCC
Confidence            9999999999999999999999999999999999987 578999999999999999999888887788999999998 56


Q ss_pred             eEE-EEEcCCcEEEEeCCCC
Q 048118          223 YWL-CAATEQSIKIWDLESK  241 (303)
Q Consensus       223 ~~l-~~~~~~~i~iwd~~~~  241 (303)
                      .+| +++.|+.|++||+...
T Consensus       325 ~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          325 SKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             TEEEEEETTSCEEEEECC--
T ss_pred             CEEEEEcCCCeEEEEECCCC
Confidence            555 5667999999998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=254.32  Aligned_cols=267  Identities=12%  Similarity=0.097  Sum_probs=191.4

Q ss_pred             cccccccceeeeecCCC-----CCcEEEEecCCCcEEEEEcccCccc------cceeeeeecCCCcceEEEEeCCCCc--
Q 048118           10 TMRAHTDMVTAIATPID-----NSDMIVTASRDKSIIVWHLTKEEKT------YGVARRRLTGHSHFVQDVVLSSDGQ--   76 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~-----~~~~~~t~s~d~~i~iw~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~--   76 (303)
                      .+.+|.+.|+.++|+|.     ..++||+++.|++|++|++......      ...+...+.+|...+.++.+++++.  
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~la  281 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVV  281 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEE
Confidence            35677889999999986     2469999999999999999754321      1112235667888888888876431  


Q ss_pred             ----------------------eecccCCEEEE--EEeeCC-CEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEE
Q 048118           77 ----------------------FVGHTKDVLSV--AFSIDN-RQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSC  130 (303)
Q Consensus        77 ----------------------~~~h~~~i~~i--~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~  130 (303)
                                            +.+|.+.|.++  .|++++ .+|+|++.|++|+|||+...... .... ......+.+
T Consensus       282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~-~~~~~~v~~  360 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS-RFRGSNLVP  360 (524)
T ss_dssp             EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE-ECSCCSCCC
T ss_pred             EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc-ccccCcccc
Confidence                                  35799999999  567787 89999999999999998543211 1111 111123778


Q ss_pred             EEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---
Q 048118          131 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---  207 (303)
Q Consensus       131 ~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---  207 (303)
                      ++|+|++  ..+++++.|+.|++||++++.+...+.+|.+.|++++|+|+++.|++|+.|++|++||+..+ .+...   
T Consensus       361 v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~  437 (524)
T 2j04_B          361 VVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNS  437 (524)
T ss_dssp             EEEETTT--TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC---
T ss_pred             eEeCCCc--CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccC
Confidence            9999975  46899999999999999998887888899999999999999999999999999999998654 22211   


Q ss_pred             ---cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          208 ---DAGAVIHALCFSPNRYWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       208 ---~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                         .....+.+++|+|++..+....  ...+|+.. ++..                    ...+.++...+.+++|+|++
T Consensus       438 ~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~--------------------~~~l~gh~~~V~~Vafsp~~  495 (524)
T 2j04_B          438 SATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVS--------------------KAKIDAHGINITCTKWNETS  495 (524)
T ss_dssp             ---CCCCEEEECBCCSSSCEEEECC--CCCCCC---------------------------------CCCSCCCEEECCST
T ss_pred             ccceeeeEEEEeccCCCCCeEEccC--CceecccccCCcc--------------------eeeecCCCceEEEEECCCCC
Confidence               1122577899999987543322  22222221 1111                    11234455667889999996


Q ss_pred             C---EEEEeecCCeEEEEeccc
Q 048118          284 S---TLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       284 ~---~l~~gs~Dg~v~~w~~~~  302 (303)
                      .   .+|+|+.||+|+||++..
T Consensus       496 ~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          496 AGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             TTTTEEEEECTTSEEEEEECSC
T ss_pred             CccHHHHhhccCceEEEEEccc
Confidence            4   999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.2e-33  Score=259.32  Aligned_cols=250  Identities=25%  Similarity=0.415  Sum_probs=206.4

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      +.+...+.+|.+.|++++|+|++ .+|++|+.||.|++|+......     ..                  .+.+|.+.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~-----~~------------------~~~~~~~~v   58 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVE-----VR------------------SIQVTETPV   58 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE-----EE------------------EEECCSSCE
T ss_pred             cccceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCce-----EE------------------EEecCCCcE
Confidence            45667799999999999999975 6899999999999999864321     11                  245688999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRA  163 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~  163 (303)
                      .+++|+|++.+|++++.|+.|++|+........  ....|...|.+++|+|++  ..+++++.||.|++||+.++ ....
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--EEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEE
Confidence            999999999999999999999999986543222  224577889999999986  57999999999999999876 6777


Q ss_pred             EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEecC--CCeEEEEEEcC--CCeEEE-EEcCCcEEEEe
Q 048118          164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSP--NRYWLC-AATEQSIKIWD  237 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~--~~~~l~-~~~~~~i~iwd  237 (303)
                      .+.+|...|.+++|+| +++.|++++.||+|++||+.+++....+..  ...+..++|+|  ++.+++ ++.++.|++||
T Consensus       135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d  214 (814)
T 3mkq_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (814)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            8889999999999999 888999999999999999988776665533  36788999998  776554 55689999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +++++.+..+.                    .+...+.+++|+|++++|++|+.||.|++||+..
T Consensus       215 ~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          215 YQTKSCVATLE--------------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             TTTTEEEEEEE--------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCcEEEEEc--------------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            98877654432                    2334567899999999999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=247.88  Aligned_cols=281  Identities=16%  Similarity=0.260  Sum_probs=205.0

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ..+..+.+|...|++++|+|++..+|++++.|++|++||+.......... ...             ....+.+|...|.
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~-------------~~~~~~~~~~~v~  169 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-TPL-------------TPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-CCB-------------CCCCSCCSSCCCC
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-ccc-------------ccccccCCCCCee
Confidence            35567889999999999999866899999999999999997543110000 000             0012356888999


Q ss_pred             EEEEeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCC----CCccceEEEEEcCCCCCCEEEEEeCCC---cEEEEECC
Q 048118           86 SVAFSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGD----AHTEWVSCVRFSPNTLQPTIVSASWDR---TVKVWNLS  157 (303)
Q Consensus        86 ~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~dg---~i~iwd~~  157 (303)
                      +++|+|+ +.++++++.|+.|++||+............    .|...+.+++|+|++ ...+++++.|+   .|++||++
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~  248 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLR  248 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETT
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCC
Confidence            9999999 789999999999999998654332222111    126789999999985 34789999998   99999998


Q ss_pred             Cc-eeEEEEc-CCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEE-EEcCC
Q 048118          158 NC-KLRATLA-GHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLC-AATEQ  231 (303)
Q Consensus       158 ~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~-~~~~~  231 (303)
                      +. +....+. +|...|++++|+| ++++|++++.|++|++||+++++.+..+. ....+.+++|+|++ .+++ ++.|+
T Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred             CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence            75 5666777 8999999999999 89999999999999999999999888875 35789999999987 5554 55689


Q ss_pred             cEEEEeCCCCceeeeeee-c---------cccccc----c--ccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeE
Q 048118          232 SIKIWDLESKSIVEDLKV-D---------LKTEAE----K--SEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI  295 (303)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~-~---------~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v  295 (303)
                      .|++||+++.+....... .         ......    .  ...... .....+...+..++|+|+|++|++|+.||.|
T Consensus       329 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v  407 (416)
T 2pm9_A          329 KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGV  407 (416)
T ss_dssp             EEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred             cEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence            999999987654322110 0         000000    0  000000 0011123345678999999999999999999


Q ss_pred             EEEeccc
Q 048118          296 RVWGIGR  302 (303)
Q Consensus       296 ~~w~~~~  302 (303)
                      ++|++..
T Consensus       408 ~~w~~~~  414 (416)
T 2pm9_A          408 SITNPKI  414 (416)
T ss_dssp             CCBCCCC
T ss_pred             EEEEecc
Confidence            9999853

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.3e-33  Score=241.68  Aligned_cols=238  Identities=18%  Similarity=0.300  Sum_probs=189.1

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      +.++.++|+|++ ++|++++.|+.+++|+........                       .+..| ..+....|++++.+
T Consensus        57 ~~~~~~~~s~~g-~~l~~~~~d~~v~i~d~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~  111 (420)
T 3vl1_A           57 DAGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDGSK-----------------------MLKRA-DYTAVDTAKLQMRR  111 (420)
T ss_dssp             BCCTTCEEEEEE-TTEEEEEETTEEEEEECCSEETTT-----------------------TSCSC-CEEEEEEECSSSCE
T ss_pred             ccccceeeeecC-CeEEEEEcCCcEEEEEecccceee-----------------------EEecC-CceEEEEEecCCCE
Confidence            345688999875 579999999999999986432211                       11122 23344578899999


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV  175 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  175 (303)
                      |++++.|+.|++||......  ......|...|.+++|+|++  ..+++++.|+.|++||+.+++....+.+|...|.++
T Consensus       112 l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  187 (420)
T 3vl1_A          112 FILGTTEGDIKVLDSNFNLQ--REIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI  187 (420)
T ss_dssp             EEEEETTSCEEEECTTSCEE--EEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred             EEEEECCCCEEEEeCCCcce--eeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence            99999999999999865433  23335688899999999985  489999999999999999998888999999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeEEE---------------------EEEcCCCeEEE-EEc
Q 048118          176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVIHA---------------------LCFSPNRYWLC-AAT  229 (303)
Q Consensus       176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~---------------------~~~s~~~~~l~-~~~  229 (303)
                      +|+|++++|++++.|++|++||+++++.+..+..    ...+.+                     ++|+|++.+++ ++.
T Consensus       188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (420)
T 3vl1_A          188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV  267 (420)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred             EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence            9999999999999999999999999988877642    234444                     44578886665 456


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                      ++.|++||+++++.+..+.                   ..+...+.+++|+|++. +|++|+.||.|++||+.
T Consensus       268 dg~i~i~d~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLP-------------------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             TSCEEEEETTTCCEEEEEC-------------------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCeEEEEECCCCceeEEcc-------------------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            8999999998876554332                   12334578899999998 99999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-32  Score=238.41  Aligned_cols=246  Identities=21%  Similarity=0.265  Sum_probs=192.5

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee-CCCEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI-DNRQI   96 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~l   96 (303)
                      ...++++|....++++++.||.|++|++.+.....                   ..-..+.+|.+.|.+++|+| ++.+|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------------~~~~~~~~h~~~V~~~~~~p~~~~~l   97 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------------KNVPLVCGHTAPVLDIAWCPHNDNVI   97 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------------TTCCCBCCCSSCEEEEEECTTCTTEE
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------------CCCceEecCCCCEEEEEeCCCCCCEE
Confidence            44567777665666678999999999986432110                   00123567999999999999 89999


Q ss_pred             EEEeCCCcEEEEecCCcee-----eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE--cCCC
Q 048118           97 VSASRDRTIKLWNTLGECK-----YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL--AGHT  169 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~--~~~~  169 (303)
                      ++++.|+.|++|++.....     ........|...|.+++|+|++ ...+++++.|+.|++||+.+++....+  ..|.
T Consensus        98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  176 (402)
T 2aq5_A           98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP  176 (402)
T ss_dssp             EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred             EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence            9999999999999865311     1122224678889999999985 348999999999999999999998888  7899


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cC-C-CeEEEEEEcCCCeEEEEE----cCCcEEEEeCCCCc
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DA-G-AVIHALCFSPNRYWLCAA----TEQSIKIWDLESKS  242 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~-~-~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~  242 (303)
                      ..|++++|+|++++|++++.|+.|++||+++++.+..+ .. . ..+..++|+|++.+++++    .++.|++||+++.+
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            99999999999999999999999999999999888776 32 2 347889999999988876    68999999998754


Q ss_pred             ee-eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEE-EeecCCeEEEEeccc
Q 048118          243 IV-EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF-SGYTDGVIRVWGIGR  302 (303)
Q Consensus       243 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~gs~Dg~v~~w~~~~  302 (303)
                      .. .....                   .+...+..++|+|++.+|+ +|+.||.|++|++..
T Consensus       257 ~~~~~~~~-------------------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          257 EPLSLQEL-------------------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             SCSEEEEC-------------------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             CCceEEec-------------------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            31 11110                   1122356789999999886 566899999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=235.66  Aligned_cols=275  Identities=19%  Similarity=0.233  Sum_probs=208.3

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---------------
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---------------   78 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------   78 (303)
                      |.+.|++++|+|++ ++|++|+.|+.|++|+..      +.....+..|...|.++.++|++.+.               
T Consensus       107 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          107 TTNQVTCLAWSHDG-NSIVTGVENGELRLWNKT------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             -CBCEEEEEECTTS-SEEEEEETTSCEEEEETT------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCC------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            67899999999864 699999999999999832      23345567788899999998876421               


Q ss_pred             ---------cccCC---------------EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc
Q 048118           79 ---------GHTKD---------------VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS  134 (303)
Q Consensus        79 ---------~h~~~---------------i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~  134 (303)
                               .|...               +.+++|++++ .+++++.|+.|++||.......  .....|...|.+++|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPT--GKLIGHHGPISVLEFN  256 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCS--EEECCCSSCEEEEEEE
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCcee--eeeccCCCceEEEEEC
Confidence                     23333               7888999875 5888999999999998654222  2223577889999999


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeE
Q 048118          135 PNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVI  213 (303)
Q Consensus       135 ~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v  213 (303)
                      |++  ..+++++.|+.|++||+.+++....+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+
T Consensus       257 ~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  333 (425)
T 1r5m_A          257 DTN--KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI  333 (425)
T ss_dssp             TTT--TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CCC--CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence            986  489999999999999999988888899999999999999999 999999999999999999988877754 6789


Q ss_pred             EEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccce--eEEEEEEcCCCCEEEEee
Q 048118          214 HALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI--YCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       214 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sp~~~~l~~gs  290 (303)
                      .+++|+|++.++++ +.++.|++||+++++........................+..+..  .+.+++|+|++++|++|+
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  413 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY  413 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence            99999999876654 568999999997665211000000000000000012233444433  788999999999999999


Q ss_pred             cCCeEEEEecc
Q 048118          291 TDGVIRVWGIG  301 (303)
Q Consensus       291 ~Dg~v~~w~~~  301 (303)
                      .||.|++|++.
T Consensus       414 ~dg~i~iw~~~  424 (425)
T 1r5m_A          414 SLQEGSVVAIP  424 (425)
T ss_dssp             SSSCCEEEECC
T ss_pred             cCceEEEEeec
Confidence            99999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.4e-32  Score=266.50  Aligned_cols=266  Identities=25%  Similarity=0.431  Sum_probs=212.7

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.+|.+.|++++|+|++ .++++|+.|++|++|+.......     .                  .+.+|.+.|.+++|
T Consensus       610 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~~~~-----~------------------~~~~h~~~v~~~~~  665 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETGEKL-----L------------------DIKAHEDEVLCCAF  665 (1249)
T ss_dssp             EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE-----E------------------EECCCSSCEEEEEE
T ss_pred             EEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCEE-----E------------------EeccCCCCEEEEEE
Confidence            467899999999999875 68999999999999998654321     1                  24578999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      +|++.++++++.|+.|++||.......  .....|...|.+++|+|++....+++++.|+.|++||+.++++...+.+|.
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             ecCCCEEEEEeCCCeEEEEECCCCceE--EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            999999999999999999998654322  222367888999999997656689999999999999999999999999999


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--------------CCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--------------GAVIHALCFSPNRYWLCAATEQSIKI  235 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~~~i~i  235 (303)
                      +.|++++|+|++++|++++.||+|++||+++++....+..              ...+.+++|+|++..++++.++.+.+
T Consensus       744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~  823 (1249)
T 3sfz_A          744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL  823 (1249)
T ss_dssp             SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence            9999999999999999999999999999998877655432              22577889999998888888899999


Q ss_pred             EeCCCCceeeeeeeccc---------ccc--------------ccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118          236 WDLESKSIVEDLKVDLK---------TEA--------------EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD  292 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~---------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D  292 (303)
                      ||+.++..+..+.....         +..              ...........+..+...+.+++|+|++.+|++++.|
T Consensus       824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence            99988776655431100         000              0000111223345667778999999999999999999


Q ss_pred             CeEEEEecc
Q 048118          293 GVIRVWGIG  301 (303)
Q Consensus       293 g~v~~w~~~  301 (303)
                      |.|++|++.
T Consensus       904 g~v~vw~~~  912 (1249)
T 3sfz_A          904 QTIRVWETK  912 (1249)
T ss_dssp             SCEEEEEHH
T ss_pred             CeEEEEEcc
Confidence            999999964

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-32  Score=238.03  Aligned_cols=256  Identities=19%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      ...+.+|.+.|++++|+|.++++|++|+.|++|++|++.........        .        .+...+.+|...|.++
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~--------~--------~~~~~~~~h~~~v~~~  137 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--------R--------EPVITLEGHTKRVGIV  137 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB--------C--------SCSEEEECCSSCEEEE
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc--------C--------CceEEecCCCCeEEEE
Confidence            34578999999999999955689999999999999998754211000        0        0112456799999999


Q ss_pred             EEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-
Q 048118           88 AFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-  165 (303)
Q Consensus        88 ~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-  165 (303)
                      +|+|++ .+|++++.|+.|++||+.............|...|.+++|+|++  ..+++++.|+.|++||+++++....+ 
T Consensus       138 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~  215 (402)
T 2aq5_A          138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKD  215 (402)
T ss_dssp             EECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeec
Confidence            999998 69999999999999998654332222114678889999999976  47999999999999999999888888 


Q ss_pred             cCCCCC-eeEEEECCCCCEEEEE---eCCCeEEEEeCCCCce---EEEecCCCeEEEEEEcCCCeEEE-EE-cCCcEEEE
Q 048118          166 AGHTGY-VNTVAVSPDGSLCASG---GKDGVILLWDLAEGKR---LYSLDAGAVIHALCFSPNRYWLC-AA-TEQSIKIW  236 (303)
Q Consensus       166 ~~~~~~-i~~~~~~~~~~~l~~~---~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~-~~-~~~~i~iw  236 (303)
                      ..|.+. +..+.|+|++++|++|   +.|+.|++||+++++.   ...+.....+.+++|+|++.+++ ++ .|+.|++|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence            678765 8999999999999999   7899999999987654   33345567789999999987664 44 58999999


Q ss_pred             eCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          237 DLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       237 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |+++++. +..+...                 . +...+.+++|+|++.++++  .|+.+++|++.
T Consensus       296 d~~~~~~~~~~l~~~-----------------~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          296 EITSEAPFLHYLSMF-----------------S-SKESQRGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             EECSSTTCEEEEEEE-----------------C-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             EecCCCcceEeeccc-----------------c-cCCcccceEEeccccccee--cceeEEEEEcC
Confidence            9988763 2222210                 0 1234567999999988764  56799999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-32  Score=230.95  Aligned_cols=205  Identities=24%  Similarity=0.405  Sum_probs=167.7

Q ss_pred             ceecccC-CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           76 QFVGHTK-DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        76 ~~~~h~~-~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      .+.+|.+ .|++++|+|++.+|++|+.|+.|+||+....... .......|...|.+++|+|++  ..+++++.|+.+++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEECCCcEEE
Confidence            3557877 8999999999999999999999999998654321 122235688899999999986  58999999999999


Q ss_pred             EECCCc--eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEec-CCCeEEEEEEcCCCeEEE-
Q 048118          154 WNLSNC--KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSLD-AGAVIHALCFSPNRYWLC-  226 (303)
Q Consensus       154 wd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-~~~~v~~~~~s~~~~~l~-  226 (303)
                      ||+..+  ++...+.+|...|.+++|+|++++|++++.|++|++||++++..   +..+. ....|.+++|+|++.+++ 
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            998765  45678899999999999999999999999999999999987643   33333 456899999999986554 


Q ss_pred             EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ++.|+.|++||.+.++....                  ..+.+|...+.+++|+|++.+|++|+.||+|++|++
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~------------------~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCC------------------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEE------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EeCCCcEEEEEecCCCEEEE------------------EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            55699999999876543211                  123455667889999999999999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.3e-32  Score=225.39  Aligned_cols=203  Identities=26%  Similarity=0.449  Sum_probs=169.3

Q ss_pred             ceecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCce---eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           76 QFVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      .+.+|.+.|.+++|+|++ .+|++|+.|+.|++|++....   .........|...|.+++|+|++  ..+++++.|+.|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--AYALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC--CEEEEEeCCCEE
Confidence            567899999999999965 799999999999999974321   11233345788899999999986  589999999999


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCC-------e
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNR-------Y  223 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~-------~  223 (303)
                      ++||+.+++....+.+|...|.+++|+|++.+|++++.|++|++||++.. .+..+ .....+.+++|+|..       .
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC------CCE
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence            99999999999999999999999999999999999999999999999754 44444 456789999999853       3


Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          224 WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       224 ~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++++.|+.|++||+++.+....                    +.+|...+.+++|+|++++|++|+.||.|++||+.
T Consensus       169 l~s~~~d~~i~~wd~~~~~~~~~--------------------~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQFQIEAD--------------------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE--------------------ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EEEEeCCCEEEEEECCcchhhee--------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            56677899999999987765432                    23345567889999999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=233.16  Aligned_cols=249  Identities=17%  Similarity=0.295  Sum_probs=188.6

Q ss_pred             eeecccccccccceeeeecCCCC--CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDN--SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~--~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      +..+..+++|.+.|++++|+|+.  +++|++|+.|+.|++|++.......   .                  ..+.+|.+
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~---~------------------~~~~~h~~   87 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI---P------------------KAQQMHTG   87 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE---E------------------EEEEECSS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee---E------------------EEeccccC
Confidence            34555789999999999999975  5899999999999999987522110   0                  12457899


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEE--cCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRF--SPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .|.+++|+|++.+|++++.|+.|++||+........   ..|...|.+++|  +|++  ..+++++.|+.|++||+++++
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNY--SCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECSSC--EEEEEEETTSEEEEECSSCSS
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCCCC--CEEEEccCCCcEEEEECCCCc
Confidence            999999999999999999999999999876543332   247788999999  6654  579999999999999998876


Q ss_pred             eEEEEcCCC-----------------------------------------CCeeEEEECCCCCE----EEEEeCCCeEEE
Q 048118          161 LRATLAGHT-----------------------------------------GYVNTVAVSPDGSL----CASGGKDGVILL  195 (303)
Q Consensus       161 ~~~~~~~~~-----------------------------------------~~i~~~~~~~~~~~----l~~~~~d~~v~i  195 (303)
                      ....+..+.                                         ..+..+.+.++...    +++++.|+.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            655554332                                         22334444433332    899999999999


Q ss_pred             EeCCCC---ceEEEecCCC-------------eEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccc
Q 048118          196 WDLAEG---KRLYSLDAGA-------------VIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKS  258 (303)
Q Consensus       196 wd~~~~---~~~~~~~~~~-------------~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (303)
                      ||++..   +.+..+....             .+.+++|+|++.++ +++.||.|++||+++++.+..+.          
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------  312 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE----------  312 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----------
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec----------
Confidence            999876   3344443322             59999999998655 55679999999999887665432          


Q ss_pred             cCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          259 EATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                                .+...+.+++|+|++.+|++|+.|+..+.|+
T Consensus       313 ----------~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          313 ----------QLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             ----------CCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             ----------CCCCCceEEEECCCCCeEEEEeccccccccc
Confidence                      3344678899999999999999998655544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.9e-32  Score=229.90  Aligned_cols=251  Identities=14%  Similarity=0.134  Sum_probs=193.2

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..+|.+.|++++|+|++ .+|++++.|+.|++|++.......  ..                  ..+.+|...|.+++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~--~~------------------~~~~~~~~~v~~~~~~   65 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNV--DL------------------LQSLRYKHPLLCCNFI   65 (342)
T ss_dssp             SSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEE--EE------------------EEEEECSSCEEEEEEE
T ss_pred             ccCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccc--cc------------------eeeeecCCceEEEEEC
Confidence            45899999999999864 689999999999999987543110  00                  0234688999999999


Q ss_pred             eCCC-EEEEEeCCCcEEEEec-CCceeeeeecCCC--CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC--------
Q 048118           91 IDNR-QIVSASRDRTIKLWNT-LGECKYTIQEGDA--HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--------  158 (303)
Q Consensus        91 ~~~~-~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~--------  158 (303)
                      |++. ++++++.|+.|++|++ .......   ...  |...|.+++|+| +  ..+++++.|+.|++||+++        
T Consensus        66 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           66 DNTDLQIYVGTVQGEILKVDLIGSPSFQA---LTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             ESSSEEEEEEETTSCEEEECSSSSSSEEE---CBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             CCCCcEEEEEcCCCeEEEEEeccCCceEe---ccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccc
Confidence            9999 9999999999999998 6653322   234  788899999999 4  5899999999999999876        


Q ss_pred             -ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC-CceE---EEecCCCeEEEEEEcC-CCeEE-EEEcCC
Q 048118          159 -CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE-GKRL---YSLDAGAVIHALCFSP-NRYWL-CAATEQ  231 (303)
Q Consensus       159 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~---~~~~~~~~v~~~~~s~-~~~~l-~~~~~~  231 (303)
                       +++...+. |...+.+++|+|++  +++++.|+.|++||+++ +...   ........+.+++|+| ++.++ +++.+|
T Consensus       140 ~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          140 KNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             EESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             cCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence             55555555 78899999999987  89999999999999987 5432   2234567899999999 87555 556789


Q ss_pred             cEEEEeCCCC------ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          232 SIKIWDLESK------SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       232 ~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .|++|+++..      +....++......           ....+...+.+++|+|++++|++|+.||.|++||+..
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNL-----------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCT-----------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cEEEEEEcCCCcccccccceeeecccccc-----------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            9999999765      3333222110000           0012234678899999999999999999999999853

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.6e-31  Score=233.63  Aligned_cols=244  Identities=25%  Similarity=0.395  Sum_probs=195.4

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ..+..+.+|.+.|+++.|+|++  ++++|+.|++|++||+.....     ..                  .+.+|.+.|.
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~-----~~------------------~~~~h~~~v~  207 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCC-----TH------------------VFEGHNSTVR  207 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEE-----EE------------------EECCCSSCEE
T ss_pred             cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcE-----EE------------------EECCCCCccE
Confidence            3455688999999999998754  899999999999999864321     11                  2456889999


Q ss_pred             EEEEee--CCCEEEEEeCCCcEEEEecCCceee---------------------eeecCCCCccceEEEEEcCCCCCCEE
Q 048118           86 SVAFSI--DNRQIVSASRDRTIKLWNTLGECKY---------------------TIQEGDAHTEWVSCVRFSPNTLQPTI  142 (303)
Q Consensus        86 ~i~~~~--~~~~l~t~~~d~~i~vw~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~~~  142 (303)
                      +++|++  ++.++++++.|+.|++||+......                     .......|...+.++..+.    ..+
T Consensus       208 ~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l  283 (464)
T 3v7d_B          208 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG----NIV  283 (464)
T ss_dssp             EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEET----TEE
T ss_pred             EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCC----CEE
Confidence            999984  6789999999999999997543211                     0122345666777775432    479


Q ss_pred             EEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCC
Q 048118          143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPN  221 (303)
Q Consensus       143 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~  221 (303)
                      ++++.|+.|++||+.+++....+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+. +...+.+++|++ 
T Consensus       284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-  362 (464)
T 3v7d_B          284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-  362 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-
Confidence            999999999999999999999999999999999999999999999999999999999999988875 457899999984 


Q ss_pred             CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          222 RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       222 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..+++++.|+.|++||+++++......                     +...+..++|+|++.+|++|+ ||.|++||+.
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYSRKFSYH---------------------HTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE---------------------CTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeeec---------------------CCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            567777889999999998765433221                     011224477899999999998 9999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.9e-31  Score=230.19  Aligned_cols=259  Identities=15%  Similarity=0.255  Sum_probs=193.7

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ....+.+|.+.|++++|+|++ ++|++|+.|++|++||+......                       ..+.+|.+.|.+
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~-----------------------~~~~~h~~~v~~  186 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP-----------------------RTLIGHRATVTD  186 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC-----------------------EEEECCSSCEEE
T ss_pred             eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc-----------------------eEEcCCCCcEEE
Confidence            344578999999999999875 69999999999999998754321                       134578999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEE---------------------cCCCCCCEEEE
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRF---------------------SPNTLQPTIVS  144 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~---------------------~~~~~~~~~~~  144 (303)
                      ++|+|++.+|++++.|+.|++||+..... ..+.....+...+.++++                     +|++  ..+++
T Consensus       187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~  264 (420)
T 3vl1_A          187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG--KYVIA  264 (420)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT--EEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC--CEEEE
Confidence            99999999999999999999999865432 222222234445555555                     4543  47899


Q ss_pred             EeCCCcEEEEECCCceeEEEEc-CCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCce-EEEec--CCCeEEEEEEc
Q 048118          145 ASWDRTVKVWNLSNCKLRATLA-GHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKR-LYSLD--AGAVIHALCFS  219 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~--~~~~v~~~~~s  219 (303)
                      ++.||.|++||+++++....+. .|...|++++|+|+++ +|++++.||.|++||+++++. +..+.  ....+.++.+.
T Consensus       265 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~  344 (420)
T 3vl1_A          265 GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA  344 (420)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE
T ss_pred             EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC
Confidence            9999999999999887666654 5788999999999998 999999999999999998754 44443  56788888776


Q ss_pred             CCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC---EEEEeecCCeEE
Q 048118          220 PNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS---TLFSGYTDGVIR  296 (303)
Q Consensus       220 ~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---~l~~gs~Dg~v~  296 (303)
                      +++.+++++.|+.|++||+...+....+...           .....+..+...+.+++|+|++.   .|++.+.+|.+.
T Consensus       345 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~  413 (420)
T 3vl1_A          345 AGALFVSSGFDTSIKLDIISDPESERPAIEF-----------ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA  413 (420)
T ss_dssp             TTEEEEEETTTEEEEEEEECCTTCCSCEECT-----------TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred             CCCEEEEecCCccEEEEeccCCCCCccceec-----------cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence            4445555667999999998764322211100           00111233444567899999999   788888899999


Q ss_pred             EEeccc
Q 048118          297 VWGIGR  302 (303)
Q Consensus       297 ~w~~~~  302 (303)
                      +|++.+
T Consensus       414 ~~~~~~  419 (420)
T 3vl1_A          414 LYNLSN  419 (420)
T ss_dssp             EEESCC
T ss_pred             EEeccC
Confidence            999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.5e-32  Score=223.69  Aligned_cols=209  Identities=20%  Similarity=0.326  Sum_probs=165.1

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.+|.+.|.+++|+|+|++|++|+.|+.|+||+..............|...|.+++|+|......+++++.|+.|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            45799999999999999999999999999999986432222233457889999999986422358999999999999999


Q ss_pred             CCce--eEEEEcCCCCCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCCce--EEEe-cCCCeEEEEEEcCCC-------
Q 048118          157 SNCK--LRATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEGKR--LYSL-DAGAVIHALCFSPNR-------  222 (303)
Q Consensus       157 ~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~s~~~-------  222 (303)
                      .+++  ....+.+|...|.+++|+|+  +++|++++.|++|++||++++..  ...+ .+...+.+++|+|+.       
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  164 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence            8763  45667889999999999997  88999999999999999986532  2222 345689999999962       


Q ss_pred             -------eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC---CEEEEeecC
Q 048118          223 -------YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG---STLFSGYTD  292 (303)
Q Consensus       223 -------~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~l~~gs~D  292 (303)
                             .+++++.|+.|++||+++++....+                ...+.+|...+.+++|+|++   .+|++|+.|
T Consensus       165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~----------------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVL----------------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTEEEE----------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             CCCCCcceEEEEcCCCcEEEEEEcCCCceEEE----------------EEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence                   4555667999999998765421110                12345566778999999985   799999999


Q ss_pred             CeEEEEecc
Q 048118          293 GVIRVWGIG  301 (303)
Q Consensus       293 g~v~~w~~~  301 (303)
                      |+|++||+.
T Consensus       229 ~~v~iWd~~  237 (297)
T 2pm7_B          229 RTCIIWTQD  237 (297)
T ss_dssp             SCEEEEEES
T ss_pred             CcEEEEEeC
Confidence            999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.4e-31  Score=220.37  Aligned_cols=203  Identities=29%  Similarity=0.472  Sum_probs=172.9

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.+|.+.|.+++|+|++++|++++.|+.|++|+.......  .....|...|.+++|+|++  ..+++++.|+.|++||
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--hhhccCCCceEEEEEcCCC--CEEEEECCCCEEEEEE
Confidence            35689999999999999999999999999999998543222  2224678889999999986  5899999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEE-EEEcCCcE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWL-CAATEQSI  233 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~i  233 (303)
                      +.+++....+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+.. ...+.+++|+|++.++ +++.|+.|
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  173 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  173 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence            999999999999999999999999999999999999999999999988887754 5689999999998655 45679999


Q ss_pred             EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++||+++++.+..+..                   .+...+..++|+|++++|++|+.||.|++||+.
T Consensus       174 ~~wd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          174 RIWDTASGQCLKTLID-------------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             EEEETTTCCEEEEECC-------------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EEEECCCCceeeEEec-------------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9999998776543321                   112335678999999999999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-32  Score=236.18  Aligned_cols=255  Identities=12%  Similarity=0.086  Sum_probs=197.8

Q ss_pred             ccceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce----
Q 048118            2 AEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF----   77 (303)
Q Consensus         2 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----   77 (303)
                      .++|.+-+  +.-.+-|.+|+|+|++ .++||+|.|++|+  +....        ..+.+|...+..+.++|++..    
T Consensus         4 ~~~~~~~~--~~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~--------~~l~gh~~~v~~V~FsPdg~~~~~~   70 (588)
T 2j04_A            4 LKDLLVDR--KEFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYA--------KDINCNSKNLFHVKEFPLEFENKLD   70 (588)
T ss_dssp             CBCEEECS--CCCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCC--------SCCSSBGGGTEEEEEECCCCCCTTT
T ss_pred             hHhhcccH--hHhhccEEEEEECCCC-CEEEEEcCCceee--ccccc--------ceecCCCccEEEEEECCCCCcceEE
Confidence            34555543  2333679999999975 6999999999999  53211        223578889999999987632    


Q ss_pred             ----------e-cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCc-----cceEEEEEcCCCCCCE
Q 048118           78 ----------V-GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT-----EWVSCVRFSPNTLQPT  141 (303)
Q Consensus        78 ----------~-~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~  141 (303)
                                . .|...|.+++|+|+|.+||+++.|+.|++|+..+ .   ....+ |.     ..+.+++|+|++  ..
T Consensus        71 ~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~---l~~l~-~~~~~~~~sv~svafSPDG--~~  143 (588)
T 2j04_A           71 FELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-M---LTNLD-SKGNLSSRTYHCFEWNPIE--SS  143 (588)
T ss_dssp             TSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-E---EEECC-CSSCSTTTCEEEEEECSSS--SC
T ss_pred             EEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-e---eeecc-CCCccccccEEEEEEcCCC--CE
Confidence                      1 5677899999999999999999999999999643 1   11122 33     259999999987  57


Q ss_pred             EEEEeCCCcEEEEECCCcee-------EEEE----cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce---EEEe
Q 048118          142 IVSASWDRTVKVWNLSNCKL-------RATL----AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR---LYSL  207 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~  207 (303)
                      +++|+.||.|++||+.+++.       ..++    .+|.+.|.+++|+|+|  +++++.|++|++||+.+++.   ..++
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence            99999999999999988752       4665    6677899999999999  88889999999999987763   2344


Q ss_pred             --cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE--cCCC
Q 048118          208 --DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW--SVDG  283 (303)
Q Consensus       208 --~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--sp~~  283 (303)
                        .+...|.+++|+  +..++++.++.|++||+.+++.... .                   .+|...+.+++|  +|++
T Consensus       222 ~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~-~-------------------~gh~~~V~~va~~~s~d~  279 (588)
T 2j04_A          222 QNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSL-K-------------------TGSLENFHIIPLNHEKES  279 (588)
T ss_dssp             ECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEE-E-------------------CSCCSCCCEEEETTCSSC
T ss_pred             cccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEE-E-------------------cCCCceEEEEEeeeCCCC
Confidence              234689999999  4667777789999999988765321 1                   134455677999  9999


Q ss_pred             CEEEEeecCCeEEEEecc
Q 048118          284 STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..|++++.||+ ++|..+
T Consensus       280 ~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          280 TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEEECSSCEE-EEEESS
T ss_pred             CEEEEEcCCCC-EEEeec
Confidence            99999999999 999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.9e-31  Score=223.82  Aligned_cols=202  Identities=26%  Similarity=0.445  Sum_probs=164.9

Q ss_pred             ceecccCCEEEEEE-----ee-CCCEEEEEeCCCcEEEEecCCce-----eeeeecCCCCccceEEEEEcCCCCCCEEEE
Q 048118           76 QFVGHTKDVLSVAF-----SI-DNRQIVSASRDRTIKLWNTLGEC-----KYTIQEGDAHTEWVSCVRFSPNTLQPTIVS  144 (303)
Q Consensus        76 ~~~~h~~~i~~i~~-----~~-~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  144 (303)
                      .+.+|.+.|++++|     ++ ++.+|++|+.|+.|++|++....     .........|...|.+++|+|++  ..+++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--CFAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--TEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--CEEEE
Confidence            46789999999999     66 89999999999999999975321     11223335788899999999975  57999


Q ss_pred             EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCC
Q 048118          145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPN  221 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~  221 (303)
                      ++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||+.........   .....+.+++|+|+
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI  173 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence            999999999999999999999999999999999999999999999999999999844332222   24567999999998


Q ss_pred             C-----------eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          222 R-----------YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       222 ~-----------~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      +           .+++++.|+.|++||.+ .+...                    .+..|...+.+++|+|++++|++|+
T Consensus       174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~--------------------~~~~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          174 MKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY--------------------TFKAHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             CCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE--------------------EEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE--------------------EEcCccccceEEEECCCCCEEEEEc
Confidence            5           45566779999999953 32221                    1233455678899999999999999


Q ss_pred             cCCeEEEEec
Q 048118          291 TDGVIRVWGI  300 (303)
Q Consensus       291 ~Dg~v~~w~~  300 (303)
                      .||.|++||+
T Consensus       233 ~dg~v~iwd~  242 (343)
T 2xzm_R          233 KDKKLLIWDI  242 (343)
T ss_dssp             TTCEEEEEES
T ss_pred             CCCeEEEEEC
Confidence            9999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=234.69  Aligned_cols=287  Identities=16%  Similarity=0.243  Sum_probs=193.7

Q ss_pred             eecccccccc------------cceeeeecCCCCC-cEEEEecCCCcEEEEEcccCccccceeeeeecCCCc--------
Q 048118            6 VLKGTMRAHT------------DMVTAIATPIDNS-DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH--------   64 (303)
Q Consensus         6 ~~~~~~~~h~------------~~v~~v~~~~~~~-~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--------   64 (303)
                      .+...+.+|.            +.|++++|+|++. .+|++++.|++|++|++........  ...+..+..        
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~--~~~~~~~~g~~~~~~~~  149 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPE--GYNLKEEDGRYRDPTTV  149 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEE--CCSCC--------CCCC
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcc--eecccCccccccCcccc
Confidence            3566788998            8899999999753 5899999999999999865321100  000000000        


Q ss_pred             ------ceEE----EEeCCCCc-eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce-eeeee-----cCCCCccc
Q 048118           65 ------FVQD----VVLSSDGQ-FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC-KYTIQ-----EGDAHTEW  127 (303)
Q Consensus        65 ------~i~~----~~~~~~~~-~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~-----~~~~~~~~  127 (303)
                            ....    +...+... ..+|...|.+++|+|++.+|++| .|+.|++||+.... .....     ....|...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (447)
T 3dw8_B          150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEV  228 (447)
T ss_dssp             CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCC
T ss_pred             cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcc
Confidence                  0000    00000112 24799999999999999999998 79999999986322 11111     23357788


Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee----EEEEcCCCC------------CeeEEEECCCCCEEEEEeCCC
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL----RATLAGHTG------------YVNTVAVSPDGSLCASGGKDG  191 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d~  191 (303)
                      |.+++|+|++ ...+++++.||.|++||+++++.    ...+..|..            .|.+++|+|++++|++++. +
T Consensus       229 v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          229 ITAAEFHPNS-CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             EEEEEECSSC-TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             eEEEEECCCC-CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            9999999985 24799999999999999998776    677888876            8999999999999999998 9


Q ss_pred             eEEEEeCCC-CceEEEecCCCe----------------EEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeecccc
Q 048118          192 VILLWDLAE-GKRLYSLDAGAV----------------IHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKT  253 (303)
Q Consensus       192 ~v~iwd~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~  253 (303)
                      .|++||++. ++.+..+.....                +..++|+|++.+++ ++.|+.|++||+++++.+. +......
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~  385 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASREN  385 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTT
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccc
Confidence            999999986 666655543221                23489999987665 4569999999999887652 2111100


Q ss_pred             ccccccC-------------ccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          254 EAEKSEA-------------TTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       254 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .......             .......-.....+..++|+|++.+||+|+.++ +++|.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          386 NKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence            0000000             000000011223467799999999999999887 55554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.7e-31  Score=237.53  Aligned_cols=288  Identities=14%  Similarity=0.196  Sum_probs=221.5

Q ss_pred             eecccccccccc-eeeeecCC--CCCcEEEEecCCCcEEEEEcccCcc---ccceeeeeecCCCcceEEEEeCCCCce--
Q 048118            6 VLKGTMRAHTDM-VTAIATPI--DNSDMIVTASRDKSIIVWHLTKEEK---TYGVARRRLTGHSHFVQDVVLSSDGQF--   77 (303)
Q Consensus         6 ~~~~~~~~h~~~-v~~v~~~~--~~~~~~~t~s~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~--   77 (303)
                      .....+.+|.+. |++++|+|  ++ ++|++|+.|++|++|++.....   ........+..|...|..+.++|++++  
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            445578899999 99999998  64 6999999999999999964310   012334556678889999999988642  


Q ss_pred             ------------------------ecccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCcc---ceE
Q 048118           78 ------------------------VGHTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTE---WVS  129 (303)
Q Consensus        78 ------------------------~~h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~---~i~  129 (303)
                                              .+|...|.+++|+|++. ++++++.|+.|++||.......  .....|..   .|.
T Consensus       133 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS--ASDRTHHKQGSFVR  210 (615)
T ss_dssp             EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE--EEECSSSCTTCCEE
T ss_pred             EeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee--eeecccCCCCceEE
Confidence                                    36888999999999998 8999999999999998654322  22245666   899


Q ss_pred             EEEEcCC-CCCCEEEEEeCCCcEEEEECCCceeEEEE-c---CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE
Q 048118          130 CVRFSPN-TLQPTIVSASWDRTVKVWNLSNCKLRATL-A---GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL  204 (303)
Q Consensus       130 ~~~~~~~-~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  204 (303)
                      +++|+|+ +  ..+++++.|+.|++||+.+++....+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++.+
T Consensus       211 ~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          211 DVEFSPDSG--EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             EEEECSTTC--CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCC--CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            9999998 5  47999999999999999999988888 6   899999999999 9999999999999999999999888


Q ss_pred             EEecCC-----CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecccccc--cccc------------Ccccee
Q 048118          205 YSLDAG-----AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA--EKSE------------ATTATT  265 (303)
Q Consensus       205 ~~~~~~-----~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~  265 (303)
                      ..+...     ..+.++.|+.+..+++++.++.|++||+++++.+..+..+.....  ....            ......
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~  367 (615)
T 1pgu_A          288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM  367 (615)
T ss_dssp             EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEE
T ss_pred             EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhh
Confidence            777544     567888887556677778899999999988776655432211000  0000            000011


Q ss_pred             eccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          266 TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       266 ~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      . ..+...+.+++| +++.+|++++.||.+++|++.
T Consensus       368 ~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~  401 (615)
T 1pgu_A          368 H-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT  401 (615)
T ss_dssp             E-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEE
T ss_pred             c-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcc
Confidence            1 345566788888 567888999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1e-30  Score=229.82  Aligned_cols=242  Identities=29%  Similarity=0.475  Sum_probs=192.8

Q ss_pred             cccccccccce-eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            8 KGTMRAHTDMV-TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         8 ~~~~~~h~~~v-~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ...+++|.+.| +++.++   ++++++|+.|++|++||+.....     ..                  .+.+|.+.|.+
T Consensus       114 ~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~-----~~------------------~~~~h~~~V~~  167 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKF-----LL------------------QLSGHDGGVWA  167 (464)
T ss_dssp             EEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEE-----EE------------------EECCCSSCEEE
T ss_pred             eEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcE-----EE------------------EEeCCCcCEEE
Confidence            34688998885 666664   36999999999999999865321     11                  24579999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce------
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------  160 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~------  160 (303)
                      ++|++++ ++++|+.|+.|++||+.....  ......|...|.+++|++......+++++.|+.|++||+.+.+      
T Consensus       168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             EEECSTT-EEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred             EEEcCCC-EEEEEeCCCCEEEEECCCCcE--EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence            9999988 999999999999999865432  2223468889999999964434689999999999999997654      


Q ss_pred             -----------------eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC
Q 048118          161 -----------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR  222 (303)
Q Consensus       161 -----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~  222 (303)
                                       ....+.+|...+.++  +++++++++++.|+.|++||+++++.+..+. ....+.+++|+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence                             245677888888877  5678999999999999999999999888875 46789999999997


Q ss_pred             eEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          223 YWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       223 ~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .++ +++.|+.|++||+++++.+..+.                    .+...+.+++|+  +.+|++|+.||.|++||+.
T Consensus       323 ~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          323 KRCISASMDTTIRIWDLENGELMYTLQ--------------------GHTALVGLLRLS--DKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEe--------------------CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECC
Confidence            655 55678999999999887665432                    334456778887  5799999999999999986


Q ss_pred             c
Q 048118          302 R  302 (303)
Q Consensus       302 ~  302 (303)
                      .
T Consensus       381 ~  381 (464)
T 3v7d_B          381 D  381 (464)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=217.22  Aligned_cols=243  Identities=23%  Similarity=0.365  Sum_probs=192.0

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+++|...|++++|+|++ ++|++|+.|++|++|++.....     ..                  .+.+|...+.++  
T Consensus        62 ~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~-----~~------------------~~~~h~~~~~~~--  115 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR-----LR------------------NMTSHSARVGSL--  115 (318)
T ss_dssp             ECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE-----EE------------------EEECCSSCEEEE--
T ss_pred             EecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCcee-----EE------------------EecCccceEEEe--
Confidence            467888999999999875 6999999999999999875421     11                  234677777654  


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce----eEEEE
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK----LRATL  165 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~----~~~~~  165 (303)
                      ++++..+++++.++.+++|+....... ......|...+.++.+++++  ..+++++.|+.|++||+++++    .....
T Consensus       116 ~~~~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  192 (318)
T 4ggc_A          116 SWNSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTF  192 (318)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEEEESSCBTTBSCCSEEE
T ss_pred             ecCCCEEEEEecCCceEeeecCCCcee-EEEEcCccCceEEEEEcCCC--CEEEEEecCcceeEEECCCCcccccceeee
Confidence            455679999999999999987543221 22224577789999999876  579999999999999998754    23455


Q ss_pred             cCCCCCeeEEEECCCCC-EE--EEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEE-EE--cCCcEEEEeCC
Q 048118          166 AGHTGYVNTVAVSPDGS-LC--ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLC-AA--TEQSIKIWDLE  239 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~-~l--~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~--~~~~i~iwd~~  239 (303)
                      ..+.+.|..+.++|++. .+  ++++.+++|++||.+.............+..+.|+|++..++ ++  .|+.|++||++
T Consensus       193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~  272 (318)
T 4ggc_A          193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  272 (318)
T ss_dssp             CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence            66788999999999765 33  466789999999999988887777778899999999875443 33  58999999999


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++.+..+                    .+|...+++++|+|++++|+|||.||+|++||+.
T Consensus       273 ~~~~~~~l--------------------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          273 TMAKVAEL--------------------KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             TCCEEEEE--------------------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCcEEEEE--------------------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            88776543                    3455678899999999999999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-30  Score=222.05  Aligned_cols=226  Identities=22%  Similarity=0.375  Sum_probs=171.0

Q ss_pred             eeeecCCCcceEEEEeCCCCce------------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 048118           56 RRRLTGHSHFVQDVVLSSDGQF------------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL  111 (303)
Q Consensus        56 ~~~~~~~~~~i~~~~~~~~~~~------------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~  111 (303)
                      ...+.+|...|.++.++|++++                        ..|...|.+++|+|++.++++++.|+.+++|++.
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            3445566666666666665431                        2345556677777777777777777777777653


Q ss_pred             Cce----eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC--CCCEEE
Q 048118          112 GEC----KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP--DGSLCA  185 (303)
Q Consensus       112 ~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~  185 (303)
                      ...    .........|...|.+++|+|++  ..+++++.|+.|++||+.++++...+.+|...|.+++++|  ++++|+
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             ccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            210    00011112477789999999985  4799999999999999999999999999999999999988  468999


Q ss_pred             EEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccc
Q 048118          186 SGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTA  263 (303)
Q Consensus       186 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (303)
                      +|+.||+|++||+++++.+..+. +...|.+++|+|++.+++ ++.|+.|++||++.++.+..+..              
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~--------------  280 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK--------------  280 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--------------
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC--------------
Confidence            99999999999999999888775 467899999999986555 55699999999988765432211              


Q ss_pred             eeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          264 TTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       264 ~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                          ......+.+++|+|++.+|++|+.||.|++||+.
T Consensus       281 ----~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          281 ----ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             ----TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ----CCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence                0112235679999999999999999999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-30  Score=223.68  Aligned_cols=208  Identities=22%  Similarity=0.456  Sum_probs=168.7

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeee-eecCC---------------CCccceEEEEEcCCCCCCE
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYT-IQEGD---------------AHTEWVSCVRFSPNTLQPT  141 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~---------------~~~~~i~~~~~~~~~~~~~  141 (303)
                      .+|.+.|.+++|+|+|++|++++ ++.+++|+........ +....               .+...|.+++|+|++  ..
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~  137 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--KF  137 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS--SE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC--CE
Confidence            36999999999999999999876 6899999975432211 11000               122358999999986  57


Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC-
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP-  220 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-  220 (303)
                      +++|+.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+++++....+.....+.+++|+| 
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999888887778899999999 


Q ss_pred             CCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          221 NRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       221 ~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      ++.++ +++.|+.|++||+++++.+..+....             ....+|...+.+++|+|++.+|++|+.||.|++||
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            66555 45679999999999887765543210             01234556678999999999999999999999999


Q ss_pred             cc
Q 048118          300 IG  301 (303)
Q Consensus       300 ~~  301 (303)
                      +.
T Consensus       285 ~~  286 (393)
T 1erj_A          285 LQ  286 (393)
T ss_dssp             C-
T ss_pred             CC
Confidence            84

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-31  Score=220.34  Aligned_cols=226  Identities=23%  Similarity=0.334  Sum_probs=168.5

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcc--ccceeeeeecCCCcceEEEEeCCCCc--------------
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEK--TYGVARRRLTGHSHFVQDVVLSSDGQ--------------   76 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--------------   76 (303)
                      +|.+.|++++|+|++ .+|++|+.|++|++|++.....  ........+.+|...|.++.++|+++              
T Consensus        56 ~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iw  134 (330)
T 2hes_X           56 AHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW  134 (330)
T ss_dssp             CCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            399999999999975 6899999999999999853211  11234556778999999999988753              


Q ss_pred             --------------eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEE
Q 048118           77 --------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI  142 (303)
Q Consensus        77 --------------~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  142 (303)
                                    +.+|...|.+++|+|++.+|++++.|+.|++|+........+.....|...|.+++|+|+.....+
T Consensus       135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence                          236888999999999999999999999999999754322233344578889999999997434579


Q ss_pred             EEEeCCCcEEEEECCCc--------eeEEEEcC-CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEe--cC
Q 048118          143 VSASWDRTVKVWNLSNC--------KLRATLAG-HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSL--DA  209 (303)
Q Consensus       143 ~~~~~dg~i~iwd~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~--~~  209 (303)
                      ++++.|+.|++||+.+.        .+...+.. |...|.+++|++++ +|++++.||+|++||..+++  .+...  .+
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            99999999999998653        33444554 88999999999765 78999999999999998764  23332  23


Q ss_pred             CC-eEEEEEEcC--CCeEE-EEEcCCcEEEEeCCC
Q 048118          210 GA-VIHALCFSP--NRYWL-CAATEQSIKIWDLES  240 (303)
Q Consensus       210 ~~-~v~~~~~s~--~~~~l-~~~~~~~i~iwd~~~  240 (303)
                      .. .+.+++|+|  ++.+| +++.|+.|++||++.
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            33 799999999  56544 567799999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-30  Score=224.25  Aligned_cols=241  Identities=20%  Similarity=0.344  Sum_probs=190.4

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..+|.+.++...+++.+ +.+++++.|+.|++|++......     ...                 ...|...|.+++|+
T Consensus        87 ~~~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~-----~~~-----------------~~~~~~~v~~v~~s  143 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVS-----ALA-----------------ETDESTYVASVKWS  143 (401)
T ss_dssp             CTTCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEE-----EEE-----------------ECCTTCCEEEEEEC
T ss_pred             CCCCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEe-----Eee-----------------ecCCCCCEEEEEEC
Confidence            44666664443333333 45888999999999998654321     000                 11377899999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-CceeEEEEcCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-NCKLRATLAGHT  169 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~  169 (303)
                      |++.+|++++.|+.|++||.......  .....|...|.+++|++    ..+++++.||.|++||++ .......+.+|.
T Consensus       144 ~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  217 (401)
T 4aez_A          144 HDGSFLSVGLGNGLVDIYDVESQTKL--RTMAGHQARVGCLSWNR----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHS  217 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             CCCCEEEEECCCCeEEEEECcCCeEE--EEecCCCCceEEEEECC----CEEEEEcCCCCEEEEecccCcceeeEEcCCC
Confidence            99999999999999999998654322  22246788899999965    379999999999999998 466778888999


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEEE---cCCcEEEEeCCCCcee
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCAA---TEQSIKIWDLESKSIV  244 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~---~~~~i~iwd~~~~~~~  244 (303)
                      +.|.+++|+|++++|++++.|+.|++||+++++.+..+. ....+.+++|+|++ .+++++   .|+.|++||+++++.+
T Consensus       218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV  297 (401)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence            999999999999999999999999999999988887774 56789999999975 566655   4899999999988776


Q ss_pred             eeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE--eecCCeEEEEecc
Q 048118          245 EDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS--GYTDGVIRVWGIG  301 (303)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~--gs~Dg~v~~w~~~  301 (303)
                      ..+..                     ...+.+++|+|++++|++  |+.||.|++|++.
T Consensus       298 ~~~~~---------------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          298 NTVDA---------------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             EEEEC---------------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             EEEeC---------------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            54431                     123678999999999998  5599999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-29  Score=222.38  Aligned_cols=263  Identities=23%  Similarity=0.404  Sum_probs=211.1

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC--------C--
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------G--   75 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~--   75 (303)
                      ..+..+.+|.+.|+++.++   ++++++|+.|++|++|++...+     ....+.+|...|.++.+.++        +  
T Consensus       150 ~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i  221 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGE-----CIHTLYGHTSTVRCMHLHEKRVVSGSRDATL  221 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             cEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCc-----EEEEECCCCCcEEEEEecCCEEEEEeCCCEE
Confidence            3455788999999999997   3589999999999999986542     34556677777777766432        1  


Q ss_pred             ------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           76 ------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        76 ------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                  .+.+|...|.++++  ++.++++++.|+.|++||......  ......|...|.++.|+.    ..++
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~----~~l~  293 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC--LHTLQGHTNRVYSLQFDG----IHVV  293 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE--EEEECCCSSCEEEEEECS----SEEE
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE--eEEecCCCCceEEEEECC----CEEE
Confidence                        23478999999998  788999999999999999854332  222346778899999932    4799


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEc
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFS  219 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s  219 (303)
                      +++.|+.|++||+++++....+.+|...+.++.++  ++++++++.||.|++||+++++.+..+.    ....|.+++|+
T Consensus       294 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  371 (445)
T 2ovr_B          294 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN  371 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC
Confidence            99999999999999999999999999999988874  6799999999999999999999888875    45689999997


Q ss_pred             CCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe----E
Q 048118          220 PNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV----I  295 (303)
Q Consensus       220 ~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~----v  295 (303)
                      + ..+++++.||.|++||+++++.+..+....               ...+...+++++|+|++.++++|+.||+    +
T Consensus       372 ~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l  435 (445)
T 2ovr_B          372 K-NFVITSSDDGTVKLWDLKTGEFIRNLVTLE---------------SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL  435 (445)
T ss_dssp             S-SEEEEEETTSEEEEEETTTCCEEEEEEECT---------------TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred             C-CEEEEEeCCCeEEEEECCCCceeeeeeccc---------------cCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence            4 456667789999999999998876653210               1223456789999999999999999998    9


Q ss_pred             EEEeccc
Q 048118          296 RVWGIGR  302 (303)
Q Consensus       296 ~~w~~~~  302 (303)
                      .+||++.
T Consensus       436 ~v~df~~  442 (445)
T 2ovr_B          436 LVLDFDV  442 (445)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-31  Score=223.94  Aligned_cols=232  Identities=12%  Similarity=0.091  Sum_probs=174.3

Q ss_pred             ecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeC
Q 048118           22 ATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASR  101 (303)
Q Consensus        22 ~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~  101 (303)
                      ++.++ +.++++|+.|++|++||+.......     .+                    ....|.++.++|.   +++++.
T Consensus        43 ~~~~d-~~~l~sg~~Dg~v~iwd~~~~~~~~-----~~--------------------~~~~v~~~~~~~~---~~s~s~   93 (343)
T 3lrv_A           43 SMYYD-KWVCMCRCEDGALHFTQLKDSKTIT-----TI--------------------TTPNPRTGGEHPA---IISRGP   93 (343)
T ss_dssp             SSSEE-EEEEEEEEETTEEEEEEESSSSCEE-----EE--------------------EEECCCTTCCCCS---EEEECS
T ss_pred             hhcCC-CCEEEEECCCCcEEEEECCCCcEEE-----EE--------------------ecCCceeeeeCCc---eEEecC
Confidence            34433 4789999999999999987543211     10                    0234556677777   999999


Q ss_pred             CCcEEEEecCCcee-------e-eeecCCCCccceEEEEEcC--CCCCCEEEEEeCCCcEEEEECCCceeEEEEc-CCCC
Q 048118          102 DRTIKLWNTLGECK-------Y-TIQEGDAHTEWVSCVRFSP--NTLQPTIVSASWDRTVKVWNLSNCKLRATLA-GHTG  170 (303)
Q Consensus       102 d~~i~vw~~~~~~~-------~-~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~  170 (303)
                      |+.|++|+..+...       . .......|...|.+++|+|  ++  ..+++++.||.|++||+++++...... .+..
T Consensus        94 D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  171 (343)
T 3lrv_A           94 CNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT--EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDV  171 (343)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C--CEEEEEETTCCEEEEESSSSCEEEEECCCSSC
T ss_pred             CCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCCC
Confidence            99999998653210       0 0111124557799999999  64  589999999999999999888766554 3456


Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE-EEecC--CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL-YSLDA--GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      .+++++|+|++++|++|+.||.|++||+++++.+ ..+..  ...|.+++|+|++.+|++++++.|++||+++++.+..+
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSS
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceee
Confidence            8999999999999999999999999999998877 66654  68999999999998888877889999999987654332


Q ss_pred             eeccccccccccCccceeeccccceeE--EEEEEcCCCCEEEEeec-CCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYC--TSLNWSVDGSTLFSGYT-DGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sp~~~~l~~gs~-Dg~v~~w~~~  301 (303)
                      ...                 ..+...+  .+++|+|++++|++|+. |+.+++|++.
T Consensus       252 ~~~-----------------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          252 PTY-----------------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             CCC-----------------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ccc-----------------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            210                 0000111  35899999999999998 9999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.2e-30  Score=239.01  Aligned_cols=228  Identities=21%  Similarity=0.331  Sum_probs=190.8

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc----------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ----------   76 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------   76 (303)
                      .+..+.+|...|++++|+|++ ++|++|+.|+.|++|++....     ....+.+|...|.++.++|++.          
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  120 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT  120 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCE
Confidence            445678899999999999975 689999999999999987543     3455667888999999998764          


Q ss_pred             ---------------eecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC
Q 048118           77 ---------------FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP  140 (303)
Q Consensus        77 ---------------~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  140 (303)
                                     +.+|.+.|.+++|+| ++..+++++.|+.|++||+......... ...+...+.+++|+|.+...
T Consensus       121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  199 (814)
T 3mkq_A          121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKP  199 (814)
T ss_dssp             EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE-ECCCTTCCCEEEECCSTTCC
T ss_pred             EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE-ecCCCCCEEEEEEEECCCCC
Confidence                           236889999999999 8889999999999999998543222111 12344678999999943346


Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEc
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFS  219 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s  219 (303)
                      .+++++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. ...+.+++|+
T Consensus       200 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~  279 (814)
T 3mkq_A          200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH  279 (814)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc
Confidence            899999999999999999999999999999999999999999999999999999999999988887754 4689999999


Q ss_pred             CCCe--EEEEEcCCcEEEEeCCCC
Q 048118          220 PNRY--WLCAATEQSIKIWDLESK  241 (303)
Q Consensus       220 ~~~~--~l~~~~~~~i~iwd~~~~  241 (303)
                      |++.  +++++.++.+.+|++...
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          280 PTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             TTCGGGEEEEEETTEEEEEECSCC
T ss_pred             cCCCceEEEEEeCCCEEEEEcCCC
Confidence            9975  688888999999998654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9e-31  Score=255.50  Aligned_cols=292  Identities=24%  Similarity=0.389  Sum_probs=224.0

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccce--------------------------------
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGV--------------------------------   54 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~--------------------------------   54 (303)
                      ....+.+|.+.|++++|+|++ +++++++.|++|++||+.........                                
T Consensus       735 ~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  813 (1249)
T 3sfz_A          735 CRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI  813 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred             hhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence            344678999999999999875 68999999999999998643211000                                


Q ss_pred             ------------------eeeeecCCCcceEEEEeCCCCc------------------------eecccCCEEEEEEeeC
Q 048118           55 ------------------ARRRLTGHSHFVQDVVLSSDGQ------------------------FVGHTKDVLSVAFSID   92 (303)
Q Consensus        55 ------------------~~~~~~~~~~~i~~~~~~~~~~------------------------~~~h~~~i~~i~~~~~   92 (303)
                                        ......+|...+..+.++|++.                        +.+|.+.|.+++|+|+
T Consensus       814 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  893 (1249)
T 3sfz_A          814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD  893 (1249)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence                              0011125566677777777653                        3478999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCcee------------------------------eeeecC-----CCCccceEEEEEcCCC
Q 048118           93 NRQIVSASRDRTIKLWNTLGECK------------------------------YTIQEG-----DAHTEWVSCVRFSPNT  137 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~------------------------------~~~~~~-----~~~~~~i~~~~~~~~~  137 (303)
                      +.++++++.|+.|++|+......                              ......     ......+.+++|+|++
T Consensus       894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g  973 (1249)
T 3sfz_A          894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL  973 (1249)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS
T ss_pred             CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC
Confidence            99999999999999998531100                              000000     0123458899999986


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEE
Q 048118          138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC  217 (303)
Q Consensus       138 ~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  217 (303)
                        ..+++|+.+|.|++||+.+++....+.+|...|++++|+|++++|++++.||.|++||+.+++.+........+.+++
T Consensus       974 --~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A          974 --EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1051 (1249)
T ss_dssp             --SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEE
T ss_pred             --CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEE
Confidence              579999999999999999999888899999999999999999999999999999999999988876666778899999


Q ss_pred             EcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecccc--------cc-------cc-------ccCccceeeccccceeEE
Q 048118          218 FSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKT--------EA-------EK-------SEATTATTTIKKKNIYCT  275 (303)
Q Consensus       218 ~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~--------~~-------~~-------~~~~~~~~~~~~~~~~~~  275 (303)
                      |+|++.+++++.++.|++||+.+++.+..+..+...        ..       ..       .........+..+...+.
T Consensus      1052 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~ 1131 (1249)
T 3sfz_A         1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR 1131 (1249)
T ss_dssp             ECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEE
T ss_pred             EcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEE
Confidence            999999999999999999999988776554322110        00       00       001112234455667789


Q ss_pred             EEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          276 SLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       276 ~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++|+|++++|++|+.||.|++||+.
T Consensus      1132 ~~~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1132 CSAFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp             EEEECSSSSEEEEEETTSCCCEEESS
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECC
Confidence            99999999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.6e-31  Score=222.35  Aligned_cols=208  Identities=21%  Similarity=0.329  Sum_probs=158.5

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.+|.+.|.+++|+|++++|++|+.|+.|++||+.............|...|.+++|+|......+++++.|+.|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            45799999999999999999999999999999986432222233346888999999986321247999999999999999


Q ss_pred             CCc--eeEEEEcCCCCCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCCceE---EEe-cCCCeEEEEEEcCCC------
Q 048118          157 SNC--KLRATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEGKRL---YSL-DAGAVIHALCFSPNR------  222 (303)
Q Consensus       157 ~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~---~~~-~~~~~v~~~~~s~~~------  222 (303)
                      +++  +....+.+|...|.+++|+|+  +.+|++|+.|++|++||++.+...   ..+ .+...+.+++|+|+.      
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  168 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI  168 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence            876  355678889999999999997  789999999999999999875322   112 234568889999872      


Q ss_pred             ------------eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC----CEE
Q 048118          223 ------------YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG----STL  286 (303)
Q Consensus       223 ------------~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~----~~l  286 (303)
                                  .+++++.|+.|++||++.......                 ...+..|...+.+++|+|++    .+|
T Consensus       169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-----------------~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE-----------------EQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE-----------------EECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             ccccccCccccceEEEecCCCeEEEEEeCCCCccce-----------------eeecccCCCceEEEEecCCCCCCCceE
Confidence                        445566799999999865421111                 11234566678899999986    789


Q ss_pred             EEeecCCeEEEEecc
Q 048118          287 FSGYTDGVIRVWGIG  301 (303)
Q Consensus       287 ~~gs~Dg~v~~w~~~  301 (303)
                      ++|+.||+|++|++.
T Consensus       232 as~s~D~~v~iw~~~  246 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCD  246 (316)
T ss_dssp             EEEETTCEEEEEECS
T ss_pred             EEEcCCCeEEEEEcc
Confidence            999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.5e-31  Score=228.20  Aligned_cols=233  Identities=16%  Similarity=0.187  Sum_probs=159.2

Q ss_pred             CCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee--------CCCEE
Q 048118           25 IDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI--------DNRQI   96 (303)
Q Consensus        25 ~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~--------~~~~l   96 (303)
                      +....++++|+.|++|++|+....+......                  -..+.+|++.|++++|+|        ++++|
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~------------------~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~l  159 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHV------------------LGGKSGHHNFVNDIDIADVYSADNRLAEQVI  159 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEE------------------ECTTTSCSSCEEEEEEEEEECTTCSEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeee------------------ecccCCCCCceEEEEEccccccccCCCCCEE
Confidence            3345789999999999999986543211111                  124568999999999998        78899


Q ss_pred             EEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-----------
Q 048118           97 VSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-----------  164 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-----------  164 (303)
                      ++++.|++|+|||+.... ....   ..|...+.+++|+|++ ...+++++.|+.|++||+++++....           
T Consensus       160 as~s~D~tv~~Wd~~~~~~~~~~---~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDEGPILAG---YPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEE---EECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             EEEECCCeEEEEECCCCceeeee---cCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            999999999999985432 2222   2466779999999975 24799999999999999987643221           


Q ss_pred             --------------EcCCCCCeeEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEE--------------
Q 048118          165 --------------LAGHTGYVNTVAVS-PDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIH--------------  214 (303)
Q Consensus       165 --------------~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~--------------  214 (303)
                                    ..+|...+.++.|+ |+++.|++++.|+++++||+..++....+.. ...+.              
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence                          23567788899886 7999999999999999999987654433211 11111              


Q ss_pred             ----EEEEcC--CCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEE
Q 048118          215 ----ALCFSP--NRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF  287 (303)
Q Consensus       215 ----~~~~s~--~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~  287 (303)
                          ...|+|  ++.+++++ .|+.|++||+.+++.....                    ..+...+.+++|+|||++||
T Consensus       316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~--------------------~~~~~~V~svafspdG~~LA  375 (393)
T 4gq1_A          316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP--------------------IQLGMPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE--------------------EECSSCEEEEEECTTSSEEE
T ss_pred             CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe--------------------cCCCCcEEEEEEcCCCCEEE
Confidence                123333  34555555 5899999999887654322                    12334578999999999999


Q ss_pred             EeecCCeEEEEec
Q 048118          288 SGYTDGVIRVWGI  300 (303)
Q Consensus       288 ~gs~Dg~v~~w~~  300 (303)
                      +++.||.+ +|.+
T Consensus       376 ~as~~Gv~-lvrL  387 (393)
T 4gq1_A          376 IATEGSVL-LTRL  387 (393)
T ss_dssp             EEESSEEE-EEEE
T ss_pred             EEeCCCeE-EEEE
Confidence            99987753 4443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=5.9e-30  Score=232.06  Aligned_cols=249  Identities=17%  Similarity=0.231  Sum_probs=196.8

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC-EEEEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD-VLSVAF   89 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~-i~~i~~   89 (303)
                      -..|.+.|++++|+|++ ++|++++ |+.|++|++....... ...                  ..+.+|.+. |.+++|
T Consensus        14 ~~~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~-~~~------------------~~~~~h~~~~v~~~~~   72 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKV-PPV------------------VQFTGHGSSVVTTVKF   72 (615)
T ss_dssp             CCCCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSS-CSE------------------EEECTTTTSCEEEEEE
T ss_pred             CCCccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCcc-ccc------------------eEEecCCCceEEEEEE
Confidence            35688899999999975 5788887 7899999987431000 001                  135678999 999999


Q ss_pred             ee--CCCEEEEEeCCCcEEEEecCCc------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC----CcEEEEECC
Q 048118           90 SI--DNRQIVSASRDRTIKLWNTLGE------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD----RTVKVWNLS  157 (303)
Q Consensus        90 ~~--~~~~l~t~~~d~~i~vw~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d----g~i~iwd~~  157 (303)
                      +|  ++++|++++.|+.|++|++...      ..........|...|.+++|+|++  ..+++++.+    +.|++||  
T Consensus        73 sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--  148 (615)
T 1pgu_A           73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--  148 (615)
T ss_dssp             CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--
T ss_pred             CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--
Confidence            99  9999999999999999998422      122222334577889999999986  478888877    6888888  


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecC-CC---eEEEEEEcCC-CeEEE-EEcC
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDA-GA---VIHALCFSPN-RYWLC-AATE  230 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~---~v~~~~~s~~-~~~l~-~~~~  230 (303)
                      .++....+.+|...|++++|+|+++ .+++++.|+.|++||+.+++.+..+.. ..   .+.+++|+|+ +.+++ ++.+
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            5567788899999999999999998 899999999999999999988887763 45   7999999999 87665 5569


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.|++||+++++.+..+...                ...+...+.+++|+ ++.+|++++.||.|++||+.
T Consensus       229 g~i~vwd~~~~~~~~~~~~~----------------~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDD----------------QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBT----------------TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CeEEEEECCCCCEeEEeccc----------------ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            99999999988766543100                00234457889999 99999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=2e-30  Score=222.53  Aligned_cols=215  Identities=21%  Similarity=0.375  Sum_probs=172.7

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      +...+.+|.+.|.++.|.|+++.+|+||+.|++|++||+......     ..+.             .....+|...|.+
T Consensus       149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-----~~~~-------------~~~~~~h~~~v~~  210 (380)
T 3iz6_a          149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-----SIFG-------------SEFPSGHTADVLS  210 (380)
T ss_dssp             TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-----EEEC-------------CCSSSSCCSCEEE
T ss_pred             ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-----EEee-------------cccCCCCccCeEE
Confidence            345688999999999999987778999999999999998754321     1110             0112468899999


Q ss_pred             EEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           87 VAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        87 i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      ++|++ ++.+|++|+.|+.|++||+..... .......|...|.+++|+|++  ..+++++.|+.|++||+++++....+
T Consensus       211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          211 LSINSLNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             EEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            99987 788999999999999999853211 122234688899999999986  57999999999999999998887777


Q ss_pred             cCCC-------CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-----cCCCeEEEEEEcCCCeEEEEE-cCCc
Q 048118          166 AGHT-------GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-----DAGAVIHALCFSPNRYWLCAA-TEQS  232 (303)
Q Consensus       166 ~~~~-------~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~-~~~~  232 (303)
                      ..+.       ..|++++|+|++++|++|+.||.|++||+..++.+..+     .+...|.+++|+|++.+|+++ .|+.
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            5543       24899999999999999999999999999988877665     245689999999998776654 6999


Q ss_pred             EEEEeCCCCc
Q 048118          233 IKIWDLESKS  242 (303)
Q Consensus       233 i~iwd~~~~~  242 (303)
                      |++|++...+
T Consensus       368 i~iW~~~~~~  377 (380)
T 3iz6_a          368 LKIWAFSGHR  377 (380)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEecCCCc
Confidence            9999987653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=7.9e-30  Score=222.57  Aligned_cols=204  Identities=29%  Similarity=0.467  Sum_probs=156.5

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      +.+|.+.|.+++|+  +.++++|+.|+.|++||....... .......|...|.+++|+.    ..+++++.||.|++||
T Consensus       209 ~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~s~~~dg~i~vwd  282 (435)
T 1p22_A          209 LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVSASGDRTIKVWN  282 (435)
T ss_dssp             ECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC----CEEEEEeCCCeEEEEE
Confidence            44788899999997  459999999999999998653322 1123346788899999943    4799999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIK  234 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~  234 (303)
                      +++++....+.+|...|.++.++  ++++++|+.||.|++||+++++.+..+. ....+.+++|+ ...+++++.||.|+
T Consensus       283 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~sg~~dg~i~  359 (435)
T 1p22_A          283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIK  359 (435)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEE
T ss_pred             CCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEec-CCEEEEEeCCCcEE
Confidence            99999999999999999999984  6899999999999999999999888876 45789999983 34566677899999


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +||+++++....           .........+..+...+.+++|  ++.+|++|+.||.|++||+..
T Consensus       360 vwd~~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          360 VWDLVAALDPRA-----------PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEEHHHHTSTTS-----------CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             EEECCCCCCccc-----------cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            999865431100           0000012233445556677888  778999999999999999853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=2.3e-30  Score=226.02  Aligned_cols=207  Identities=19%  Similarity=0.287  Sum_probs=162.0

Q ss_pred             eecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           77 FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ..+|...|++++|+| ++.+||+|+.||.|+|||+.............|...|.+++|+|.. ...|++++.||+|++||
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSSSCEEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEEee
Confidence            356888999999999 4679999999999999998654433344445788999999999853 25899999999999999


Q ss_pred             CCCceeEEEEcCC--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCe-EE-EEEcC
Q 048118          156 LSNCKLRATLAGH--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRY-WL-CAATE  230 (303)
Q Consensus       156 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l-~~~~~  230 (303)
                      ++++........+  ...+.+++|+|++++|++|+.||.|++||++.. .+..+. +...|.+++|+|++. ++ +++.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            9876554433333  345788999999999999999999999998754 444443 467899999999863 44 45679


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +.|++||+++.+....+.                 ....|...+++++|+|++.+|++|+.||.|++||+..
T Consensus       273 ~~v~iwd~~~~~~~~~~~-----------------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFL-----------------YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             SBCCEEETTTCCSSSCCS-----------------BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             ceeeEEecccccccceEE-----------------EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            999999998765332211                 1123455678899999999999999999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=7.4e-29  Score=216.43  Aligned_cols=231  Identities=26%  Similarity=0.472  Sum_probs=186.0

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      .+|...|+++.++   ++++++|+.|++|++||+...+.     ..                  .+.+|.+.|.+++|  
T Consensus       130 ~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~-----~~------------------~~~~h~~~v~~l~~--  181 (435)
T 1p22_A          130 SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLEC-----KR------------------ILTGHTGSVLCLQY--  181 (435)
T ss_dssp             CSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCE-----EE------------------EECCCSSCEEEEEC--
T ss_pred             cCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeE-----EE------------------EEcCCCCcEEEEEE--
Confidence            3566779999883   46899999999999999864321     11                  24578889999988  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE---EEEcCC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR---ATLAGH  168 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~---~~~~~~  168 (303)
                      ++.++++|+.|+.|++||......  ......|...|.+++|+++    .+++++.||.|++||+.+++..   ..+.+|
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEM--LNTLIHHCEAVLHLRFNNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCE--EEEECCCCSCEEEEECCTT----EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcE--EEEEcCCCCcEEEEEEcCC----EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            788999999999999999865432  2223467888999999753    7999999999999999876543   667889


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      ...|.++++  +++++++|+.||.|++||+++++.+..+. ....+.+++|+ +..+++++.|+.|++||+++++.+..+
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            999999999  67899999999999999999999888875 45678999985 356667778999999999988766543


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .                    .+...+.+++|  ++.+|++|+.||.|++||+.
T Consensus       333 ~--------------------~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          333 E--------------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             C--------------------CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             e--------------------CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECC
Confidence            2                    23445667777  78899999999999999973

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=214.89  Aligned_cols=210  Identities=21%  Similarity=0.320  Sum_probs=169.7

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.+|.+.|.+++|+|++.+|++++.|+.|++|++.............|...|.+++|+|+.....+++++.||.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            45689999999999999999999999999999998643333334445688899999998763235899999999999999


Q ss_pred             CCCce--eEEEEcCCCCCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCCceE--EE-ecCCCeEEEEEEcC--------
Q 048118          156 LSNCK--LRATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEGKRL--YS-LDAGAVIHALCFSP--------  220 (303)
Q Consensus       156 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~--~~-~~~~~~v~~~~~s~--------  220 (303)
                      +.+++  ....+..|...|.+++|+|+  +++|++++.|+.|++||++.+...  .. ......+.+++|+|        
T Consensus        86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  165 (379)
T 3jrp_A           86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  165 (379)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred             cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence            98886  66778889999999999999  999999999999999999877432  22 24567899999999        


Q ss_pred             -----CCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC---CCEEEEeec
Q 048118          221 -----NRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD---GSTLFSGYT  291 (303)
Q Consensus       221 -----~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~~~l~~gs~  291 (303)
                           ++. +++++.|+.|++||+++++.....                ...+..+...+.+++|+|+   +.+|++|+.
T Consensus       166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL----------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             ----CTTCEEEEEETTSCEEEEEEETTTTEEEE----------------EEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             ccCCCCCCEEEEEeCCCeEEEEEecCCCcceee----------------EEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence                 455 555667999999999765432211                1123445566789999999   899999999


Q ss_pred             CCeEEEEecc
Q 048118          292 DGVIRVWGIG  301 (303)
Q Consensus       292 Dg~v~~w~~~  301 (303)
                      ||.|++||+.
T Consensus       230 dg~i~iwd~~  239 (379)
T 3jrp_A          230 DRTCIIWTQD  239 (379)
T ss_dssp             TSCEEEEEES
T ss_pred             CCEEEEEeCC
Confidence            9999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=221.40  Aligned_cols=278  Identities=10%  Similarity=0.125  Sum_probs=191.6

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEE---------------------------
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD---------------------------   68 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~---------------------------   68 (303)
                      .+++++.|+|++. +++++ .++.|++|++..+++..  .......+......                           
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWE--FAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEE--EEEEEECCC--------------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcce--eeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            4789999998864 55544 57899999987654110  11111111100000                           


Q ss_pred             ---------EEeCCCCceecccCCEEEEEEeeCCCEE-EEEeCCCcEEEEecC--CceeeeeecCCCCccceEEEEEcCC
Q 048118           69 ---------VVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWNTL--GECKYTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        69 ---------~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~i~~~~~~~~  136 (303)
                               ....+.....+|.+.|.+++|+|++.+| ++++.|+.|++|++.  ............+...|.+++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                     0001111234677789999999999996 899999999999986  3322222111234567999999998


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeEE----EEcCCCCCeeEEEECCC---CCEEEEEeCCCeEEEEeCCCCceEEEe--
Q 048118          137 TLQPTIVSASWDRTVKVWNLSNCKLRA----TLAGHTGYVNTVAVSPD---GSLCASGGKDGVILLWDLAEGKRLYSL--  207 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~--  207 (303)
                      +  ..+++++.+|.+++|++.+.+...    .+.+|...|++++|+|+   +++|++++.|++|++||+++++.+..+  
T Consensus       161 ~--~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          161 D--TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             S--SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred             C--CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence            6  579999999999999998765433    66789999999999999   899999999999999999998887764  


Q ss_pred             cCCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccC--cc---ceeeccccceeEEEEEEcC
Q 048118          208 DAGAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEA--TT---ATTTIKKKNIYCTSLNWSV  281 (303)
Q Consensus       208 ~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~sp  281 (303)
                      .....|.+++|+ ++.++ +++.|+.|++||+++++.+..+.............  ..   ...........+..++|+|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            356789999999 87655 55679999999999998877665321000000000  00   0000012234568899999


Q ss_pred             CCCEEEEee-cCCeEEEEec
Q 048118          282 DGSTLFSGY-TDGVIRVWGI  300 (303)
Q Consensus       282 ~~~~l~~gs-~Dg~v~~w~~  300 (303)
                      ++++|++++ .|+.|++|++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEe
Confidence            999999999 9999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=2.4e-28  Score=213.74  Aligned_cols=256  Identities=25%  Similarity=0.464  Sum_probs=200.5

Q ss_pred             cccccccccce-eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC--------C---
Q 048118            8 KGTMRAHTDMV-TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------G---   75 (303)
Q Consensus         8 ~~~~~~h~~~v-~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~---   75 (303)
                      ...+.+|.+.| +++.++   ++++++|+.|++|++|++....     ....+.+|...|.++.++++        +   
T Consensus       111 ~~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK  182 (445)
T ss_dssp             CEEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred             eEEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEecCCEEEEEeCCCeEE
Confidence            44688998874 666653   4689999999999999986543     34556678888877766532        1   


Q ss_pred             -----------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEE
Q 048118           76 -----------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS  144 (303)
Q Consensus        76 -----------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  144 (303)
                                 .+.+|...|.+++|+  +..+++++.|+.|++||.......  .....|...+.+++++.    ..+++
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~----~~l~~  254 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL--HVLMGHVAAVRCVQYDG----RRVVS  254 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE--EEEECCSSCEEEEEECS----SCEEE
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE--EEEcCCcccEEEEEECC----CEEEE
Confidence                       245799999999985  568999999999999998653322  22235778899999943    36899


Q ss_pred             EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCe
Q 048118          145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRY  223 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~  223 (303)
                      ++.||.|++||+++++....+.+|...|.++.+  ++.++++++.|+.|++||+++++.+..+.. ...+.++.+++ ..
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~  331 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NI  331 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TE
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-CE
Confidence            999999999999999999999999999999999  688999999999999999999998887753 46777887753 45


Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          224 WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       224 ~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++++.|+.|++||+++++.+..+...                 ..+...+.+++|+  +.+|++|+.||.|++||+.
T Consensus       332 l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          332 LVSGNADSTVKIWDIKTGQCLQTLQGP-----------------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECST-----------------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEccC-----------------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            666778999999999988776554321                 1133456778885  5799999999999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.6e-29  Score=213.58  Aligned_cols=263  Identities=10%  Similarity=0.135  Sum_probs=172.3

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      .++.+|.+.|++++|+|++ .+|++|+.| .+++|+........                         ..+...+..++
T Consensus        13 ~~~~~h~~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~~~~~-------------------------~~~~~~~~~~~   65 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPVAHIM-------------------------SQEMRHLSKVR   65 (355)
T ss_dssp             ------CCCCCEEEECTTS-SEEEEECSS-EEEEEEETTEEEEE-------------------------EEECSCCCEEE
T ss_pred             cccccCCCceEEEEECCCC-CEEEEEcCC-EEEEEecCCcceee-------------------------eeecCCeEEEE
Confidence            3568899999999999975 588888776 47899976432110                         01112355677


Q ss_pred             EeeCCCEE-EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC---------------C-------------
Q 048118           89 FSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL---------------Q-------------  139 (303)
Q Consensus        89 ~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------~-------------  139 (303)
                      +.+++..+ ++++.|+.|++||...........   +...|.+++++++..               .             
T Consensus        66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~  142 (355)
T 3vu4_A           66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGV  142 (355)
T ss_dssp             ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEE
T ss_pred             EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCce
Confidence            77777765 567778899999975432221111   233466666655310               0             


Q ss_pred             -----CEEEE--EeCCCcEEEEECCCce----------------eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCe-EEE
Q 048118          140 -----PTIVS--ASWDRTVKVWNLSNCK----------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGV-ILL  195 (303)
Q Consensus       140 -----~~~~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-v~i  195 (303)
                           ..++.  |+.+|.|++||+.+++                ....+.+|.+.|++++|+|++++|++|+.|++ |++
T Consensus       143 ~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i  222 (355)
T 3vu4_A          143 CEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV  222 (355)
T ss_dssp             EEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred             EEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence                 12333  5789999999998754                26778999999999999999999999999998 999


Q ss_pred             EeCCCCceEEEec---CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeecc--ccccccccCccceeeccc
Q 048118          196 WDLAEGKRLYSLD---AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDL--KTEAEKSEATTATTTIKK  269 (303)
Q Consensus       196 wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  269 (303)
                      ||+++++.+..+.   +...|.+++|+|++.++++ +.|+.|++||++.....+...+..  .+.............+..
T Consensus       223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (355)
T 3vu4_A          223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV  302 (355)
T ss_dssp             EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC
T ss_pred             EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc
Confidence            9999999998886   5788999999999876654 568999999997654322111100  000000000000000110


Q ss_pred             -cceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          270 -KNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       270 -~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                       .......++|+|++++|++++.||.+++|++.
T Consensus       303 ~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          303 DKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence             11111348999999999999999999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=2.7e-29  Score=231.51  Aligned_cols=204  Identities=29%  Similarity=0.460  Sum_probs=168.9

Q ss_pred             ceecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCcee---eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           76 QFVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECK---YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      .+.+|++.|++++|++++ .+|+||+.|+.|++|++.....   ........|...|.+++|+|++  ..+++|+.|+.|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--CEEEEEeCCCcE
Confidence            367899999999999875 7899999999999999753211   1122234688899999999986  589999999999


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe----cCCCeEEEEEEcCCC---eE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL----DAGAVIHALCFSPNR---YW  224 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~---~~  224 (303)
                      ++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+.........    .+...|.+++|+|++   .+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            99999999999999999999999999999999999999999999998755433222    234579999999985   35


Q ss_pred             EEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          225 LCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++++.|+.|++||+++++....                    +..|...+.+++|+|++++|++|+.||.|++||+.
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~--------------------~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRST--------------------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEE--------------------ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEE--------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            6677899999999988765443                    23455567899999999999999999999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-29  Score=236.02  Aligned_cols=257  Identities=11%  Similarity=0.085  Sum_probs=187.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..+|.+.|++++|+|++ .+||+|+.|++|++|+....+.     ..                   ...|...|.+++|+
T Consensus        13 ~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~-----~~-------------------~~~~~~~V~~l~fs   67 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEV-----VI-------------------KLEDRSAIKEMRFV   67 (902)
T ss_dssp             EEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEE-----EE-------------------ECSSCCCEEEEEEE
T ss_pred             ccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEE-----EE-------------------EcCCCCCEEEEEEc
Confidence            45899999999999975 6999999999999998753211     00                   12367789999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE--------
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR--------  162 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~--------  162 (303)
                      | +++|++++.|+.|++||+.........   .+...|.+++|+|++  ..+++|+.||.|++||+.++++.        
T Consensus        68 p-g~~L~S~s~D~~v~lWd~~~~~~~~~~---~~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~  141 (902)
T 2oaj_A           68 K-GIYLVVINAKDTVYVLSLYSQKVLTTV---FVPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ  141 (902)
T ss_dssp             T-TTEEEEEETTCEEEEEETTTCSEEEEE---ECSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred             C-CCEEEEEECcCeEEEEECCCCcEEEEE---cCCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceecccc
Confidence            9 889999999999999998653322211   144679999999986  58999999999999999887753        


Q ss_pred             ---EEEcCCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCceEEEecCC-------------------CeEEEEEEc
Q 048118          163 ---ATLAGHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKRLYSLDAG-------------------AVIHALCFS  219 (303)
Q Consensus       163 ---~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------------------~~v~~~~~s  219 (303)
                         ..+.+|.+.|++++|+|+ +..|++|+.|++| +||+++++.+..+...                   ..|.+++|+
T Consensus       142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs  220 (902)
T 2oaj_A          142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH  220 (902)
T ss_dssp             HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred             ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence               123568899999999996 4689999999999 9999999888776533                   569999999


Q ss_pred             CCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc----CCC-CEEEEeecC-
Q 048118          220 PNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS----VDG-STLFSGYTD-  292 (303)
Q Consensus       220 ~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----p~~-~~l~~gs~D-  292 (303)
                      |++.+++ ++.|+.|++||+++++.+....+.......... ......+ .+...+.+++|+    |++ .+|++|+.| 
T Consensus       221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~-~~~~~~~-~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~  298 (902)
T 2oaj_A          221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP-DYIRDSS-TNAAKISKVYWMCENNPEYTSLLISHKSIS  298 (902)
T ss_dssp             TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT-TCCCCCS-SCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred             CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC-cCCCCCc-cccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence            9987665 556999999999988765421110000000000 0000000 123357889995    554 467788776 


Q ss_pred             ----CeEEEEecc
Q 048118          293 ----GVIRVWGIG  301 (303)
Q Consensus       293 ----g~v~~w~~~  301 (303)
                          +.+++|+++
T Consensus       299 ~~~~~~v~~~~~~  311 (902)
T 2oaj_A          299 RGDNQSLTMIDLG  311 (902)
T ss_dssp             TSSCCCEEEEEEE
T ss_pred             CCCCceEEEEecC
Confidence                378888853

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=215.97  Aligned_cols=250  Identities=17%  Similarity=0.203  Sum_probs=185.3

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcc--cCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLT--KEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+|.+.|++++|+|++..++++|+.|++|++|++.  ....     ...+.                ...|...|.+++|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----~~~~~----------------~~~~~~~v~~~~~  157 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----LKLRK----------------RFCFSKRPNAISI  157 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----EEEEE----------------EEECSSCEEEEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----eeeee----------------cccCCCCceEEEE
Confidence            35677899999999865435999999999999986  3221     11110                1246688999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCceee--eeecCCCCccceEEEEEcCC-CCCCEEEEEeCCCcEEEEECCCceeEEE-E
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECKY--TIQEGDAHTEWVSCVRFSPN-TLQPTIVSASWDRTVKVWNLSNCKLRAT-L  165 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~  165 (303)
                      +|++.+|++++.|+.|.+|++......  .......|...|.+++|+|+ .....+++++.|+.|++||+.+++.... +
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence            999999999999999999997543221  11122357788999999998 1125799999999999999998887766 5


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--------------------------CCeEEEEEEc
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--------------------------GAVIHALCFS  219 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------------------~~~v~~~~~s  219 (303)
                      .+|...|++++|+ ++++|++++.|++|++||+++++.+..+..                          ...+..++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            6899999999999 999999999999999999999987776641                          2468899999


Q ss_pred             CCCeEEEEE--cCCcEEEEeC--CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec----
Q 048118          220 PNRYWLCAA--TEQSIKIWDL--ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT----  291 (303)
Q Consensus       220 ~~~~~l~~~--~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~----  291 (303)
                      |++.+++++  .++.|++|++  ..+..+..+.                 .+..+ ..+.+++|+|++.++++++.    
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~-----------------~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~  378 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ-----------------IITFP-YNVISLSAHNDEFQVTLDNKESSG  378 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE-----------------EEECS-SCEEEEEEETTEEEEEECCTTCCS
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeecc-----------------EeccC-CceEEEEecCCcEEEEEecccCCC
Confidence            998766554  5899999999  4442211111                 11112 34678999996545555553    


Q ss_pred             --CCeEEEEecc
Q 048118          292 --DGVIRVWGIG  301 (303)
Q Consensus       292 --Dg~v~~w~~~  301 (303)
                        ++.|.+|.+.
T Consensus       379 ~~~~~i~v~~~~  390 (450)
T 2vdu_B          379 VQKNFAKFIEYN  390 (450)
T ss_dssp             SCCCSEEEEEEE
T ss_pred             CCCcceEEEEEE
Confidence              5668888764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1e-28  Score=208.10  Aligned_cols=232  Identities=12%  Similarity=0.151  Sum_probs=183.4

Q ss_pred             cccccccceeeeecCCCCCc-EEEEecCCCcEEEEEc-ccCccccceeeeeecCCCcceEEEEeCCCCceec--ccCCEE
Q 048118           10 TMRAHTDMVTAIATPIDNSD-MIVTASRDKSIIVWHL-TKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVG--HTKDVL   85 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~-~~~t~s~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--h~~~i~   85 (303)
                      .+.+|...|++++|+|+ +. +|++|+.|+.|++|++ .....                        ..+.+  |...|.
T Consensus        51 ~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~------------------------~~~~~~~~~~~v~  105 (342)
T 1yfq_A           51 QSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSF------------------------QALTNNEANLGIC  105 (342)
T ss_dssp             EEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSSE------------------------EECBSCCCCSCEE
T ss_pred             eeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEEEeccCCce------------------------EeccccCCCCceE
Confidence            45689999999999987 46 8999999999999998 64321                        02345  889999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEecCCc---e----eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           86 SVAFSIDNRQIVSASRDRTIKLWNTLGE---C----KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~i~vw~~~~~---~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      +++|+| +.++++++.|+.|++||....   .    ....... .+...+.+++|+|+.    +++++.|+.|++||+++
T Consensus       106 ~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~----l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          106 RICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKIFTMDTNSSR----LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             EEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCEEEEEECSSE----EEEEESTTEEEEEESSC
T ss_pred             EEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCceEEEEecCCc----EEEEeCCCeEEEEECCc
Confidence            999999 999999999999999997430   0    1111122 267789999999863    88999999999999987


Q ss_pred             -ce--eEEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCC------ceEEEecC----------CCeEEEEEE
Q 048118          159 -CK--LRATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEG------KRLYSLDA----------GAVIHALCF  218 (303)
Q Consensus       159 -~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~~----------~~~v~~~~~  218 (303)
                       ..  .......|...+.+++|+| +++++++++.||.+++|++...      +.+..+..          ...+.+++|
T Consensus       180 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  259 (342)
T 1yfq_A          180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF  259 (342)
T ss_dssp             CTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred             cccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence             43  3344566788999999999 9999999999999999999876      55555532          238999999


Q ss_pred             cCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccc-ceeEEEEEEcCCCCEEEEeecCCe
Q 048118          219 SPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKK-NIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       219 s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      +|++.++ +++.+|.|++||+++++.+..+.                    .+ ...+.+++  |++.+|++|+.||.
T Consensus       260 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--------------------KFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CTTTCCEEEEETTSCEEEEETTTTEEEEECC--------------------CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cCCCCEEEEecCCceEEEEcCccHhHhhhhh--------------------cccCCCceEec--CCCCeEEEEecCCc
Confidence            9998655 45668999999999887665432                    22 34566777  99999999999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.4e-28  Score=202.79  Aligned_cols=258  Identities=16%  Similarity=0.132  Sum_probs=166.6

Q ss_pred             eeeeecCCC-CC-cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-ee------cccCCEEEEE
Q 048118           18 VTAIATPID-NS-DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-FV------GHTKDVLSVA   88 (303)
Q Consensus        18 v~~v~~~~~-~~-~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~------~h~~~i~~i~   88 (303)
                      +.++-|... .. --++++++ .+|++|+.....  .-.+......+..+|..+.+.|+.. +.      -+...|..++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW--QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSS--BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc--cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            445555443 22 24666665 599999987641  1234555666676777776666432 10      1334566666


Q ss_pred             EeeC----CCEEEEEe--------------------CCCcEEEEecCCceeeeeecCCCCccceEEEEEcC-CCCCCEEE
Q 048118           89 FSID----NRQIVSAS--------------------RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-NTLQPTIV  143 (303)
Q Consensus        89 ~~~~----~~~l~t~~--------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~  143 (303)
                      ++|+    +.++++++                    .|+.|++|++....+. ......|...+..++|+| ++.+..++
T Consensus       119 ~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~-~~s~~~~~~~v~~l~fs~~~g~~~~La  197 (356)
T 2w18_A          119 CSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG-KENQFLMPPEETILTFAEVQGMQEALL  197 (356)
T ss_dssp             C------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE-EEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred             ECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce-eeeeccCCCceeeEEeeccCCCCceEE
Confidence            6666    55555544                    3777888877332111 111124555667778887 44456899


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCC---CCeeEEEECCCCCEE------------EEEeCCCeEEEEeCCCCceEEEe-
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHT---GYVNTVAVSPDGSLC------------ASGGKDGVILLWDLAEGKRLYSL-  207 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~d~~v~iwd~~~~~~~~~~-  207 (303)
                      +++.|++|++||++++++..++.+|.   ..+.+++|+|+|+++            ++|+.|++|++||..+++.+..+ 
T Consensus       198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred             EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence            99999999999999999999998654   357778999999876            56788999999999998876543 


Q ss_pred             ---cCC--CeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccccee-EEEEEEc
Q 048118          208 ---DAG--AVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY-CTSLNWS  280 (303)
Q Consensus       208 ---~~~--~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s  280 (303)
                         +.+  ..+.+..++  +.+++ ++.|+.|++||+++++.+..++-                    |... +..++||
T Consensus       278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~g--------------------H~~~vvs~vafS  335 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPP--------------------VSDQHWSFVKWS  335 (356)
T ss_dssp             ECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECC--------------------C--CCCCEEEEC
T ss_pred             eeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecC--------------------CCCCeEEEEEEC
Confidence               111  123333333  43444 45699999999999988776532                    1111 2347899


Q ss_pred             CCCCEEEEeecCCeEEEEecc
Q 048118          281 VDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       281 p~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      |||++|++|+.|++|++||+.
T Consensus       336 PDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          336 GTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             SSSSEEEEECTTSCEEEEEEC
T ss_pred             CCCCEEEEEECCCcEEEecCC
Confidence            999999999999999999963

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.4e-28  Score=201.02  Aligned_cols=230  Identities=17%  Similarity=0.270  Sum_probs=187.5

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCC--------C---
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSD--------G---   75 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~---   75 (303)
                      ....+..|...|.+++|+|++ .++++++.|+.+++|++.....  ......+..|...+.++.+...        +   
T Consensus        51 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~  127 (313)
T 3odt_A           51 LGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSG--EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTT--SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             EEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCC--CCcccchhhcccCEEEEEecCCEEEEEeCCCCEE
Confidence            445577889999999999865 6999999999999999865421  1233445667777777766322        1   


Q ss_pred             ---------ceecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE
Q 048118           76 ---------QFVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA  145 (303)
Q Consensus        76 ---------~~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  145 (303)
                               .+..|...|.+++|+| ++.++++++.|+.|++||... ....  ....+...+.+++|+|++   .++++
T Consensus       128 ~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~i~~~~~~~~~---~~~~~  201 (313)
T 3odt_A          128 VWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-VIKT--FSGIHNDVVRHLAVVDDG---HFISC  201 (313)
T ss_dssp             EEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-EEEE--ECSSCSSCEEEEEEEETT---EEEEE
T ss_pred             EEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-eEEE--EeccCcccEEEEEEcCCC---eEEEc
Confidence                     2347899999999998 899999999999999999432 2211  222377789999999985   38999


Q ss_pred             eCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeE
Q 048118          146 SWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYW  224 (303)
Q Consensus       146 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~  224 (303)
                      +.|+.|++||+++++....+.+|...|++++|+|++ .|++++.||.|++||+++++.+..+.. ...+.+++|+|++.+
T Consensus       202 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  280 (313)
T 3odt_A          202 SNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI  280 (313)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred             cCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE
Confidence            999999999999999999999999999999999998 588999999999999999988877754 458999999999999


Q ss_pred             EEEEcCCcEEEEeCCCCceeee
Q 048118          225 LCAATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~~~~~~~  246 (303)
                      ++++.|+.|++||+++++....
T Consensus       281 ~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          281 IVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEeCCCcEEEEeCCCCceeeh
Confidence            9999999999999988766543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.7e-29  Score=233.71  Aligned_cols=255  Identities=14%  Similarity=0.108  Sum_probs=186.6

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .+.+|...+..++|+|+ +++|+||+.|++|++||+........           .+..+.+.. .--.+|...|.+++|
T Consensus       430 ~l~G~~~~v~sv~~spd-g~~laSgs~DgtVrlWd~~~g~~~~~-----------~~~~~~l~~-~~~~~h~~~V~svaf  496 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEY-GTAFITGHSNGSVRIYDASHGDIQDN-----------ASFEVNLSR-TLNKAKELAVDKISF  496 (902)
T ss_dssp             SCCCSBCCCCCCCCCSE-EEEEEEEETTSEEEEEESSCCTTTTT-----------BCEEEEHHH-HTTCSSSCCEEEEEE
T ss_pred             cccCCcCCCCccccccc-CcEEEEecCCCcEEEEECCCccccCC-----------ceEEeechh-hcCCCCCCceeEEEe
Confidence            46788888888899986 47999999999999999875421100           000000000 000268899999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEecCCcee-------------------------------------------eeeecCCCCcc
Q 048118           90 SIDNRQIVSASRDRTIKLWNTLGECK-------------------------------------------YTIQEGDAHTE  126 (303)
Q Consensus        90 ~~~~~~l~t~~~d~~i~vw~~~~~~~-------------------------------------------~~~~~~~~~~~  126 (303)
                      +|++++||+|+.|++|+||++.+...                                           ........|..
T Consensus       497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~  576 (902)
T 2oaj_A          497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG  576 (902)
T ss_dssp             ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred             cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence            99999999999999999999743210                                           01223345888


Q ss_pred             ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE--E---Ec-CCCCCeeEEEEC-----CCC---CEEEEEeCCCe
Q 048118          127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--T---LA-GHTGYVNTVAVS-----PDG---SLCASGGKDGV  192 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~--~---~~-~~~~~i~~~~~~-----~~~---~~l~~~~~d~~  192 (303)
                      .|.+++|+|++   .+++|+.|++|++||+++.....  .   +. +|.+.|++++|+     |||   ++|++|+.|++
T Consensus       577 ~V~svafSpdG---~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t  653 (902)
T 2oaj_A          577 KTSAINNSNIG---FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE  653 (902)
T ss_dssp             SEEEEEECBTS---EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred             cEEEEEecCCc---EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence            99999999985   79999999999999998876543  2   22 788999999999     885   79999999999


Q ss_pred             EEEEeC---CCCceEEEec------CCCeEEEEE-Ec----------------------CCCeEEEEEcCCcEEEEeCCC
Q 048118          193 ILLWDL---AEGKRLYSLD------AGAVIHALC-FS----------------------PNRYWLCAATEQSIKIWDLES  240 (303)
Q Consensus       193 v~iwd~---~~~~~~~~~~------~~~~v~~~~-~s----------------------~~~~~l~~~~~~~i~iwd~~~  240 (303)
                      |++||+   .+++.+..+.      ...+|.+++ |+                      +++.+++++ +..|++|++.+
T Consensus       654 v~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~  732 (902)
T 2oaj_A          654 VITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGK  732 (902)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTC
T ss_pred             EEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCcc
Confidence            999999   6776554442      234555554 55                      455555555 78999999988


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEE---E------EcCCCCEEEEeecCCeEEEEecc
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL---N------WSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++...+.-                    .+...+.++   .      |++++..|++++.||+|++|++-
T Consensus       733 ~k~~~k~~--------------------~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p  782 (902)
T 2oaj_A          733 SKSTHKGF--------------------KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIP  782 (902)
T ss_dssp             CCEEEEEC--------------------SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETT
T ss_pred             ccceeeEc--------------------ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECc
Confidence            77654331                    112233444   5      78889999999999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.1e-28  Score=210.46  Aligned_cols=233  Identities=15%  Similarity=0.203  Sum_probs=183.5

Q ss_pred             eecccccccccceeeeecCCC---CC---cEEEEecCCCcEEEEEcccCccccceeeeeecCC-----CcceEEEEeC--
Q 048118            6 VLKGTMRAHTDMVTAIATPID---NS---DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGH-----SHFVQDVVLS--   72 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~---~~---~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~--   72 (303)
                      .....+.+|...|++++|+|+   ++   .+|++++.|+.|++|++.............+..|     ...|.++.++  
T Consensus        53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred             CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence            345668899999999999986   24   6899999999999999976543222223444555     4667777666  


Q ss_pred             --CCCce-e------------------------------------------cccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118           73 --SDGQF-V------------------------------------------GHTKDVLSVAFSIDNRQIVSASRDRTIKL  107 (303)
Q Consensus        73 --~~~~~-~------------------------------------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~v  107 (303)
                        +++.+ .                                          .|...|.+++|+|++ ++++++.|+.|++
T Consensus       133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence              55432 1                                          156678899999999 9999999999999


Q ss_pred             EecCCceee-eeecCCCC---ccceEEEEEcCCCCCCEEEEEeCC---CcEEEEECCCceeEEEEcC-------------
Q 048118          108 WNTLGECKY-TIQEGDAH---TEWVSCVRFSPNTLQPTIVSASWD---RTVKVWNLSNCKLRATLAG-------------  167 (303)
Q Consensus       108 w~~~~~~~~-~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~d---g~i~iwd~~~~~~~~~~~~-------------  167 (303)
                      ||+...... .+.....|   ...|.+++|+|++  ..+++++.|   +.|++||+++++....+..             
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~--~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG--SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSST--TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCC--CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            998654322 22211126   7789999999985  578999999   9999999999998888988             


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec------C----------------CCeEEEEEEcCCC---
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD------A----------------GAVIHALCFSPNR---  222 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~----------------~~~v~~~~~s~~~---  222 (303)
                      |...|.+++|+|++++|++++.|+.|++||+++++.+..+.      .                ...|.+++|+|++   
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            99999999999999999999999999999999999888876      3                6789999999996   


Q ss_pred             --------eEEEEEcCCcEEEEeCCCC
Q 048118          223 --------YWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       223 --------~~l~~~~~~~i~iwd~~~~  241 (303)
                              .+++++.|+.|++||++++
T Consensus       370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          370 GMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccceEEEecCCCcEEEEEcCCC
Confidence                    4556677999999998765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.7e-28  Score=209.31  Aligned_cols=199  Identities=12%  Similarity=0.168  Sum_probs=153.4

Q ss_pred             cccceeeeecCCCCCcEEE--EecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           14 HTDMVTAIATPIDNSDMIV--TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~--t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      +.+.+.+++|+|++. +++  +++.|++|++||.......     .                   ...|.+.|.+++|+|
T Consensus       132 ~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~-----~-------------------~~~~~~~V~~v~fsp  186 (365)
T 4h5i_A          132 ADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEK-----F-------------------EIETRGEVKDLHFST  186 (365)
T ss_dssp             TTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEE-----E-------------------EEECSSCCCEEEECT
T ss_pred             cccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEE-----E-------------------EeCCCCceEEEEEcc
Confidence            344577899999864 554  5557999999998653321     1                   123677899999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC----cEEEEECCCcee----EE
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR----TVKVWNLSNCKL----RA  163 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg----~i~iwd~~~~~~----~~  163 (303)
                      +|+++++++.++.+.+|...+.. ........|...|.+++|+|++  ..+++++.|+    .++.|++.....    ..
T Consensus       187 dg~~l~s~s~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~  263 (365)
T 4h5i_A          187 DGKVVAYITGSSLEVISTVTGSC-IARKTDFDKNWSLSKINFIADD--TVLIAASLKKGKGIVLTKISIKSGNTSVLRSK  263 (365)
T ss_dssp             TSSEEEEECSSCEEEEETTTCCE-EEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEeccceeEEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcceeEEeecccccceecceeee
Confidence            99999999876654444443332 2223334577889999999986  4678887776    688898866543    34


Q ss_pred             EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCC
Q 048118          164 TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLES  240 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  240 (303)
                      .+.+|...|++++|+|+|++||+|+.|++|++||+++++++.++.  +...|++++|+|++.+|++ +.|+.|+|||+..
T Consensus       264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            577899999999999999999999999999999999999998863  4678999999999977765 5699999999854

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1e-27  Score=201.70  Aligned_cols=205  Identities=27%  Similarity=0.419  Sum_probs=168.3

Q ss_pred             ceecccCCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCce---eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           76 QFVGHTKDVLSVAFSID-NRQIVSASRDRTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      .+.||++.|++++|+|+ +.+|+||+.|++|+|||+....   .........|...|.+++|+|++  ..+++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEEcccccc
Confidence            46789999999999997 6899999999999999975422   11223345788899999999986  589999999999


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCC--e-EEE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNR--Y-WLC  226 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~--~-~l~  226 (303)
                      ++|+............+...+....++|++++|++++.|+.+++||+.........  .....+..++|++++  . +++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            99999988888888888889999999999999999999999999999876554332  235678899998864  3 445


Q ss_pred             EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ++.|+.|++||+++++.+..+.                    .+...+.+++|+|++++|++|+.||.|++||+..
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~--------------------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHI--------------------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             EcCCCEEEEEECCCCceeeEec--------------------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            6679999999999887654432                    3344578899999999999999999999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=5.5e-28  Score=207.22  Aligned_cols=203  Identities=17%  Similarity=0.274  Sum_probs=163.1

Q ss_pred             ceecccCCEEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      .+.+|.+.|.+++|+|++ .+|++|+.|+.|++||..............|...|.+++|+|+. ...+++++.|+.|++|
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEETTTEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEeCCCEEEEE
Confidence            356899999999999999 89999999999999998754433333334588899999999943 2579999999999999


Q ss_pred             ECCCceeEEEEcC---CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCe--EEEEE
Q 048118          155 NLSNCKLRATLAG---HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRY--WLCAA  228 (303)
Q Consensus       155 d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~--~l~~~  228 (303)
                      |+.+. ....+..   |...|.+++|+|++++|++++.|+.|++||++ ++.+..+. ....|.+++|+|++.  +++++
T Consensus       147 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          147 DFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             ETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence            99864 4444443   34789999999999999999999999999994 56666654 567899999999985  44556


Q ss_pred             cCCcEEEEeCCCCc----eeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEeecCCeEEEEeccc
Q 048118          229 TEQSIKIWDLESKS----IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       229 ~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .|+.|++||+++.+    .+..+                     .+...+.+++|+| ++.+|++++.||.|++||+..
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~---------------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEM---------------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEE---------------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             CCCEEEEEeCCCCCcccceEEEe---------------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            79999999998632    22111                     2345678899999 999999999999999999853

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-28  Score=207.21  Aligned_cols=238  Identities=11%  Similarity=0.059  Sum_probs=173.2

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcc-eEEEEeCCCCceecccCCEEEEEEee--C
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHF-VQDVVLSSDGQFVGHTKDVLSVAFSI--D   92 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~h~~~i~~i~~~~--~   92 (303)
                      ..|.++.++|.    +++++.|++|++|+........       ...... +..       ...+|.++|.+++|+|  +
T Consensus        77 ~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~  138 (343)
T 3lrv_A           77 PNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL-------DSKTNKVLRE-------IEVDSANEIIYMYGHNEVN  138 (343)
T ss_dssp             ECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE-------ETTTCCEEEE-------EECCCSSCEEEEECCC---
T ss_pred             CCceeeeeCCc----eEEecCCCeEEEEEccCceEEe-------ecCCcceeEE-------eecCCCCCEEEEEcCCCCC
Confidence            56778888865    9999999999999875321000       000000 111       1125678999999999  9


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE-EEEcC-CCC
Q 048118           93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR-ATLAG-HTG  170 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~  170 (303)
                      +.++++++.|+.|++||+......... ...+...+.+++|+|++  ..+++|+.||.|++||+++++.. ..+.. |.+
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~~i~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~  215 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDSQYIVH-SAKSDVEYSSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEA  215 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSCEEEEE-CCCSSCCCCEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEE-ecCCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence            999999999999999998654332222 22345569999999986  57999999999999999998876 77887 999


Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC----CCeE--EEEEEcCCCeEEEEE-c-CCcEEEEeCCCCc
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA----GAVI--HALCFSPNRYWLCAA-T-EQSIKIWDLESKS  242 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v--~~~~~s~~~~~l~~~-~-~~~i~iwd~~~~~  242 (303)
                      +|++++|+|++.+|++++ |++|++||+++++.+..+..    ...+  .+++|+|++.+++++ . ++.|++|+++...
T Consensus       216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            999999999999999999 55999999998876544431    1223  469999999877663 3 8999999986543


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcC---CCCEEEEeecCCeEEEEe
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV---DGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~l~~gs~Dg~v~~w~  299 (303)
                      .....                        ..+..+.|+|   +...|++++.||.++++-
T Consensus       295 ~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          295 KNWTK------------------------DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             CSEEE------------------------EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cceEe------------------------cCceeEecCccccccceeEEEecCCceEEEE
Confidence            21111                        1234567787   888999999999998873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=9.1e-28  Score=204.53  Aligned_cols=204  Identities=18%  Similarity=0.266  Sum_probs=165.5

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.+|...|.+++|+|++.+|++++.|+.|++||+.............|...|.+++|+|++  ..+++++.|+.|++||
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d  124 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICY  124 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEE
Confidence            35689999999999999999999999999999998654333233334577889999999986  5899999999999999


Q ss_pred             CCCce----eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC------------------CCceEEEec-CCCe
Q 048118          156 LSNCK----LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA------------------EGKRLYSLD-AGAV  212 (303)
Q Consensus       156 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~-~~~~  212 (303)
                      +...+    .......|...|.+++|+|++++|++++.|+.|++||++                  .++.+..+. ....
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
T 1k8k_C          125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  204 (372)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence            97765    223336688999999999999999999999999999953                  566666664 4568


Q ss_pred             EEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          213 IHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       213 v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      +.+++|+|++.++ +++.|+.|++||+++++.+..+.                    .+...+.+++|+|++.+|++| .
T Consensus       205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~~~-~  263 (372)
T 1k8k_C          205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--------------------SETLPLLAVTFITESSLVAAG-H  263 (372)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--------------------CSSCCEEEEEEEETTEEEEEE-T
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc--------------------cCCCCeEEEEEecCCCEEEEE-e
Confidence            9999999998555 55678999999998887665443                    223346789999999988888 8


Q ss_pred             CCeEEEEeccc
Q 048118          292 DGVIRVWGIGR  302 (303)
Q Consensus       292 Dg~v~~w~~~~  302 (303)
                      ||.|++|++..
T Consensus       264 d~~i~i~~~~~  274 (372)
T 1k8k_C          264 DCFPVLFTYDS  274 (372)
T ss_dssp             TSSCEEEEEET
T ss_pred             CCeEEEEEccC
Confidence            99999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-28  Score=211.87  Aligned_cols=246  Identities=11%  Similarity=0.144  Sum_probs=180.3

Q ss_pred             eeeee-cCCCcceEEEEeCC-CCce-----------------------------ecccCCEEEEEEeeCCCEEEEEeCCC
Q 048118           55 ARRRL-TGHSHFVQDVVLSS-DGQF-----------------------------VGHTKDVLSVAFSIDNRQIVSASRDR  103 (303)
Q Consensus        55 ~~~~~-~~~~~~i~~~~~~~-~~~~-----------------------------~~h~~~i~~i~~~~~~~~l~t~~~d~  103 (303)
                      ....+ .+|...|.++.++| ++.+                             .+|.+.|.+++|+|++.+|++++.|+
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  133 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG  133 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            44555 67888899998888 6532                             15788999999999999999999999


Q ss_pred             cEEEEecC----Cceeeeee-------cCCC--CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC--C
Q 048118          104 TIKLWNTL----GECKYTIQ-------EGDA--HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG--H  168 (303)
Q Consensus       104 ~i~vw~~~----~~~~~~~~-------~~~~--~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~  168 (303)
                      .|++||+.    +.......       ....  +...+.++.+........+++++.|+.|++||+++++....+..  |
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            99999973    11111000       0011  34456666633222235899999999999999999999888888  8


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcC----CCeEEEE-EcCCcEEEEeCCCC
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSP----NRYWLCA-ATEQSIKIWDLESK  241 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~----~~~~l~~-~~~~~i~iwd~~~~  241 (303)
                      ...|++++|+|++++|++|+.||+|++||+++++.+..+  .....|.+++|+|    ++.++++ +.|+.|++||++++
T Consensus       214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            899999999999999999999999999999999988876  4456899996654    5656655 46889999999998


Q ss_pred             ceeeeeeecccccc----ccccCccceeeccc--cceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          242 SIVEDLKVDLKTEA----EKSEATTATTTIKK--KNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       242 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+..+........    ...........+.+  +...+++++|+ ++++|++|+.||.|++||+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred             cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence            87766653211000    00000000111222  55567889999 77899999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=4.3e-27  Score=204.78  Aligned_cols=267  Identities=14%  Similarity=0.104  Sum_probs=198.4

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-----------
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-----------   76 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------   76 (303)
                      +..+..+ ..+.+++|+| ++.++++++.|+.|++||....+.........+.+|...+..+.+++++.           
T Consensus       116 ~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v  193 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV  193 (433)
T ss_dssp             EEEEECS-SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred             EEEEcCC-CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence            3334444 3466899998 56788999999999999987654322111113446667777777766553           


Q ss_pred             -------------eecccCCEEEEEEeeCCCEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEE
Q 048118           77 -------------FVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI  142 (303)
Q Consensus        77 -------------~~~h~~~i~~i~~~~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  142 (303)
                                   +..|...+.+++|+|++.+++ +++.|+.|++||.........  .. ....+.+++|+|++  ..+
T Consensus       194 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~g--~~l  268 (433)
T 3bws_A          194 HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--TD-KIGLPRGLLLSKDG--KEL  268 (433)
T ss_dssp             EEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--CC-CCSEEEEEEECTTS--SEE
T ss_pred             EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--ec-CCCCceEEEEcCCC--CEE
Confidence                         235777899999999999875 555899999999865432221  12 23458899999986  356


Q ss_pred             EEEe--------CCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCCCceEEEecCCCeE
Q 048118          143 VSAS--------WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAEGKRLYSLDAGAVI  213 (303)
Q Consensus       143 ~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v  213 (303)
                      ++++        .|+.|++||+.+++....+ .|...+..++|+|+++.+ ++++.|+.|++||+.+++.+..+.....+
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            6666        4889999999988776655 345678899999999755 66688999999999999888888777889


Q ss_pred             EEEEEcCCCeEEEEEc----------------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEE
Q 048118          214 HALCFSPNRYWLCAAT----------------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL  277 (303)
Q Consensus       214 ~~~~~s~~~~~l~~~~----------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (303)
                      .+++|+|++..++++.                ||.|++||+++++.+..+..                     ...+..+
T Consensus       348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------------------~~~~~~~  406 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------------------GNQPTGL  406 (433)
T ss_dssp             EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------------------SSSEEEE
T ss_pred             CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------------------CCCCceE
Confidence            9999999987655443                35999999998877654431                     1134679


Q ss_pred             EEcCCCCEEEEeec-CCeEEEEecccC
Q 048118          278 NWSVDGSTLFSGYT-DGVIRVWGIGRY  303 (303)
Q Consensus       278 ~~sp~~~~l~~gs~-Dg~v~~w~~~~~  303 (303)
                      +|+|++++|++++. |+.|++|++..|
T Consensus       407 ~~s~dg~~l~~~~~~d~~i~v~~~~~~  433 (433)
T 3bws_A          407 DVSPDNRYLVISDFLDHQIRVYRRDGF  433 (433)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEETTC
T ss_pred             EEcCCCCEEEEEECCCCeEEEEEecCC
Confidence            99999999988775 999999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=9.7e-28  Score=201.82  Aligned_cols=207  Identities=24%  Similarity=0.328  Sum_probs=162.9

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      +.+|.+.|.+++|+|++.+|++++.|+.|++|++.....  ........|...|.+++|+|......+++++.||.|++|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            468999999999999999999999999999999864311  122223467888999999994112589999999999999


Q ss_pred             ECCCc---------eeEEEEcCCCCCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCCceEEEe--------------cC
Q 048118          155 NLSNC---------KLRATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEGKRLYSL--------------DA  209 (303)
Q Consensus       155 d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~  209 (303)
                      |+.++         +....+..|...|.+++|+|+  +++|++++.||.|++||+++++.+..+              ..
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            99876         557778899999999999999  999999999999999999887643322              23


Q ss_pred             CCeEEEEEEcCC---CeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC--
Q 048118          210 GAVIHALCFSPN---RYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG--  283 (303)
Q Consensus       210 ~~~v~~~~~s~~---~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--  283 (303)
                      ...+.+++|+|+   +.++ +++.++.+.+|+...++....                  ..+..+...+.+++|+|++  
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA------------------AKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE------------------EECCCCCSCEEEEEECCCSSC
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee------------------eecCCCCcceeEEEECCCCCC
Confidence            457889999996   5544 555677887777665543211                  1233455567899999998  


Q ss_pred             --CEEEEeecCCeEEEEecc
Q 048118          284 --STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       284 --~~l~~gs~Dg~v~~w~~~  301 (303)
                        .+|++|+.||.|++||+.
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEE
T ss_pred             cceEEEEEcCCCeEEEEeCC
Confidence              799999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.3e-28  Score=210.99  Aligned_cols=248  Identities=11%  Similarity=0.110  Sum_probs=175.7

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID   92 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~   92 (303)
                      .|.+.|.+++|+|++ .+||+++.||++++|+...       ....+. |...+             ....|.+++|+|+
T Consensus        83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~-------------~~~sv~svafSPD  140 (588)
T 2j04_A           83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNL-------------SSRTYHCFEWNPI  140 (588)
T ss_dssp             SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-------EEEECC-CSSCS-------------TTTCEEEEEECSS
T ss_pred             CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-------eeeecc-CCCcc-------------ccccEEEEEEcCC
Confidence            457889999999975 6899999999999998532       111111 11100             1235899999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCcee--------eeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee--
Q 048118           93 NRQIVSASRDRTIKLWNTLGECK--------YTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL--  161 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~--------~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~--  161 (303)
                      |++|++|+.||+|++|+..+...        ..+. ....|..+|.+++|+|++    +++++.|++|++||+.+++.  
T Consensus       141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~~~~~~  216 (588)
T 2j04_A          141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSASSHQP  216 (588)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCSSSSCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCCCcccc
Confidence            99999999999999999865421        1111 123577899999999974    78899999999999987763  


Q ss_pred             -EEEE-cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-EEEecCCCeEEEEEE--cCCCeEEEEEc-CCcEEE
Q 048118          162 -RATL-AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-LYSLDAGAVIHALCF--SPNRYWLCAAT-EQSIKI  235 (303)
Q Consensus       162 -~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~--s~~~~~l~~~~-~~~i~i  235 (303)
                       ..++ .+|...|.+++|+  ++.||+++ +++|++||+.+++. .....+...+.+++|  +|++..++.+. +|. ++
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-kl  292 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KV  292 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EE
T ss_pred             ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EE
Confidence             3556 4788899999999  68999887 69999999998877 555567788999999  99998887776 788 99


Q ss_pred             EeCCCCceeeeeeecccccc---ccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          236 WDLESKSIVEDLKVDLKTEA---EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      |..+.-..-...........   ...........+.. ...+.+++|||||..+|+++.
T Consensus       293 w~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          293 LLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             EeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            99863111000000000000   00000011112233 556889999999999998874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.5e-26  Score=198.67  Aligned_cols=245  Identities=14%  Similarity=0.125  Sum_probs=186.0

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .++..+..|. .+.+++|+|++..++++++.|++|++||+...+.     ...                  + .+...+.
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----~~~------------------~-~~~~~v~   77 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IAT------------------V-PAGSSPQ   77 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEE------------------E-ECSSSEE
T ss_pred             eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----EEE------------------E-ECCCCcc
Confidence            3444566664 5899999998765568888999999999864321     111                  1 1233789


Q ss_pred             EEEEeeCCCEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           86 SVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        86 ~i~~~~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      +++|+|++++++ +++.|+.|++||...........   +...+.+++|+|++. ..+++++.++.|++||+.+++....
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---TGKSPLGLALSPDGK-KLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---CCCCcceEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEE
Confidence            999999999775 45567999999987543322221   223578999999862 2447888899999999999988887


Q ss_pred             EcCCCCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE----cCCcEEEEeCC
Q 048118          165 LAGHTGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA----TEQSIKIWDLE  239 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~  239 (303)
                      +..+. .+..++|+|+++.+ ++++.++.|++||+++++.+..+.....+.+++|+|++..++++    .++.|++||++
T Consensus       154 ~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          154 VSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            77654 56899999999887 56778999999999999888888777889999999998655544    47899999999


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE-EEeecCCeEEEEecc
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL-FSGYTDGVIRVWGIG  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~gs~Dg~v~~w~~~  301 (303)
                      +++.+..+...                     ..+..++|+|++++| ++++.|+.|++||+.
T Consensus       233 ~~~~~~~~~~~---------------------~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          233 TNKITARIPVG---------------------PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             TTEEEEEEECC---------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEecC---------------------CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            88766544321                     123678999999977 677899999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.9e-26  Score=200.34  Aligned_cols=233  Identities=20%  Similarity=0.380  Sum_probs=180.3

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      .+.|+|++.  ++|++| .|++|+|||...+...     ..+                .+.+|...|++++|+|+|.+|+
T Consensus       108 ~~~l~wS~~--n~lAvg-ld~tV~lWd~~tg~~~-----~~~----------------~~~~~~~~V~sv~fspdg~~la  163 (420)
T 4gga_A          108 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDIL-----QLL----------------QMEQPGEYISSVAWIKEGNYLA  163 (420)
T ss_dssp             CBCEEECTT--SEEEEE-ETTEEEEEETTTCCEE-----EEE----------------ECCSTTCCEEEEEECTTSSEEE
T ss_pred             ceeEEECCC--CEEEEE-eCCEEEEEECCCCCEE-----EEE----------------EecCCCCcEEEEEECCCCCEEE
Confidence            346888854  566665 5999999998754321     111                1235778899999999999999


Q ss_pred             EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEEE
Q 048118           98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTVA  176 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~  176 (303)
                      +|+.|+.|++||.......  .....|...+.++.+++    ..+++|+.|+.+++||.... .....+.+|...+..+.
T Consensus       164 sgs~Dg~v~iWd~~~~~~~--~~~~~h~~~v~~~s~~~----~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~  237 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRL--RNMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  237 (420)
T ss_dssp             EEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             EEECCCeEEEEEcCCCcEE--EEEeCCCCceEEEeeCC----CEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence            9999999999998654332  23356788899998875    37999999999999998764 45677889999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCce----EEE-ecCCCeEEEEEEcCCC-eEEEEE---cCCcEEEEeCCCCceeeee
Q 048118          177 VSPDGSLCASGGKDGVILLWDLAEGKR----LYS-LDAGAVIHALCFSPNR-YWLCAA---TEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~----~~~-~~~~~~v~~~~~s~~~-~~l~~~---~~~~i~iwd~~~~~~~~~~  247 (303)
                      ++|+++++++++.|+.+++|+...++.    +.. ......|.+++|+|.+ .+++++   .|+.|++||+++++....+
T Consensus       238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  317 (420)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred             ecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence            999999999999999999999987653    222 2446789999999975 454432   4899999999998876544


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee--cCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY--TDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs--~Dg~v~~w~~~  301 (303)
                      ..                     ...+.++.|+|++..+++++  .||.|++||+.
T Consensus       318 ~~---------------------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          318 DA---------------------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             EC---------------------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             cc---------------------ccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            32                     12356788999999887654  79999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=7.2e-28  Score=204.49  Aligned_cols=222  Identities=18%  Similarity=0.215  Sum_probs=165.9

Q ss_pred             eecccCCEEEEEEeeC---CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           77 FVGHTKDVLSVAFSID---NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~---~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      +.+|.+.|.+++|+|+   |.+|++++.|+.|++|++.............|...|.+++|+|++  ..+++++.||.|++
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG--SKVFTASCDKTAKM  112 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--SEEEEEETTSEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--CEEEEEcCCCcEEE
Confidence            4579999999999999   599999999999999998642222112223578889999999975  57999999999999


Q ss_pred             EECCCceeEEEEcCCCCCeeEEEE--CCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCC
Q 048118          154 WNLSNCKLRATLAGHTGYVNTVAV--SPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQ  231 (303)
Q Consensus       154 wd~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  231 (303)
                      ||+.+++... +..|...|++++|  +|++++|++++.|+.|++||+++++.+..+.....+.++.+.++ .+++++.++
T Consensus       113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  190 (368)
T 3mmy_A          113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP-MAVVATAER  190 (368)
T ss_dssp             EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT-EEEEEEGGG
T ss_pred             EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC-eeEEEeCCC
Confidence            9999888665 5568999999999  99999999999999999999999988888877777777777754 556677788


Q ss_pred             cEEEEeCCCCceeeeeee------------c---------ccccccc-------ccCc---cceeeccccce--------
Q 048118          232 SIKIWDLESKSIVEDLKV------------D---------LKTEAEK-------SEAT---TATTTIKKKNI--------  272 (303)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~------------~---------~~~~~~~-------~~~~---~~~~~~~~~~~--------  272 (303)
                      .+.+|+++..........            .         +......       ....   .....+..+..        
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence            899998876432211000            0         0000000       0000   11112223332        


Q ss_pred             ----eEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          273 ----YCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       273 ----~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                          .+.+++|+|++++|++|+.||.|++||+..
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence                588999999999999999999999999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=222.20  Aligned_cols=209  Identities=21%  Similarity=0.331  Sum_probs=167.9

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.+|.+.|++++|+|++.++++|+.|+.|++|+..+...........|...|.+++|+|+.....+++|+.||.|++||+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            46899999999999999999999999999999986433333444457889999999998733368999999999999999


Q ss_pred             CCce--eEEEEcCCCCCeeEEEECCC--CCEEEEEeCCCeEEEEeCCCCce---EEEecCCCeEEEEEEcC---------
Q 048118          157 SNCK--LRATLAGHTGYVNTVAVSPD--GSLCASGGKDGVILLWDLAEGKR---LYSLDAGAVIHALCFSP---------  220 (303)
Q Consensus       157 ~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~---------  220 (303)
                      .+++  ....+.+|...|++++|+|+  ++.+++|+.||.|++||++++..   .........+.+++|+|         
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~  164 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence            8876  66778889999999999999  99999999999999999987632   22224567899999999         


Q ss_pred             ----CC-eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC---CCEEEEeecC
Q 048118          221 ----NR-YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD---GSTLFSGYTD  292 (303)
Q Consensus       221 ----~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~~~l~~gs~D  292 (303)
                          ++ .+++++.||.|++||++++......                ...+..|...+.+++|+|+   +.+|++|+.|
T Consensus       165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~----------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVL----------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             --CGGGCCEEEEETTSCEEEEEEETTTTEEEE----------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             ccCCCCCEEEEEECCCeEEEEeccCCccccee----------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence                34 4556677999999999765322111                1223445667889999999   8999999999


Q ss_pred             CeEEEEecc
Q 048118          293 GVIRVWGIG  301 (303)
Q Consensus       293 g~v~~w~~~  301 (303)
                      |.|++||+.
T Consensus       229 g~I~iwd~~  237 (753)
T 3jro_A          229 RTCIIWTQD  237 (753)
T ss_dssp             SCEEEEEES
T ss_pred             CEEEEecCC
Confidence            999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-27  Score=200.80  Aligned_cols=202  Identities=17%  Similarity=0.265  Sum_probs=164.6

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.+|.+.|.+++|+|++.+|++++.|+.|++||......  ......|...|.+++|+|++  ..+++++.|+.|++||
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LGTLDGHTGTIWSIDVDCFT--KYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTS--SEEEEEETTTEEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hhhhhhcCCcEEEEEEcCCC--CEEEEEeCCCeEEEEE
Confidence            3678999999999999999999999999999999865332  22234678889999999975  5899999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceE-----------EEe-cC--CCeEEEE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKRL-----------YSL-DA--GAVIHAL  216 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~-----------~~~-~~--~~~v~~~  216 (303)
                      +.+++....+. +...+.+++|+|+++++++++.+     +.|++||+..+...           ..+ ..  ...+.++
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            99998888777 78899999999999999999998     99999999765321           111 11  2289999


Q ss_pred             EEcCCCeEEE-EEcCCcEEEEeCCC-CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe
Q 048118          217 CFSPNRYWLC-AATEQSIKIWDLES-KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       217 ~~s~~~~~l~-~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      +|+|++.+++ ++.++.|++||+++ .+.+..+.                    .+...+.+++|+|++.+|++++.||.
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID--------------------LHEKSISDMQFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE--------------------CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe--------------------cCCCceeEEEECCCCCEEEEecCCce
Confidence            9999986655 55689999999987 44443322                    23345678999999999999999999


Q ss_pred             EEEEeccc
Q 048118          295 IRVWGIGR  302 (303)
Q Consensus       295 v~~w~~~~  302 (303)
                      |++||+..
T Consensus       242 i~v~d~~~  249 (369)
T 3zwl_B          242 SFLVDVST  249 (369)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99999853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.9e-27  Score=201.86  Aligned_cols=211  Identities=18%  Similarity=0.262  Sum_probs=163.4

Q ss_pred             ccCCEEEEEEeeC----CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcC-CCCCCEEEEEeCCCcEEEE
Q 048118           80 HTKDVLSVAFSID----NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-NTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        80 h~~~i~~i~~~~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~dg~i~iw  154 (303)
                      |...|.+++|+|+    +.+|++++.|+.|++||........  ....|...|.+++|+| ++  ..+++++.||.|++|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~--~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--HYVGHGNAINELKFHPRDP--NLLLSVSKDHALRLW  143 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCT--TEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--eecCCCCcEEEEEECCCCC--CEEEEEeCCCeEEEE
Confidence            6678999999999    6799999999999999986433222  2235788899999999 54  589999999999999


Q ss_pred             ECCCceeEEEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-----------------------
Q 048118          155 NLSNCKLRATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-----------------------  208 (303)
Q Consensus       155 d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------  208 (303)
                      |+++++....+   ..|...|.+++|+|++++|++++.||.|++||+++++.+..+.                       
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            99999888888   6899999999999999999999999999999998765433221                       


Q ss_pred             ------CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118          209 ------AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD  282 (303)
Q Consensus       209 ------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  282 (303)
                            ....|.+++|+ ...+++++.++.|++||+++.+......      ............+..+...+..++|+|+
T Consensus       224 ~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKI------KPSESNVTILGRFDYSQCDIWYMRFSMD  296 (366)
T ss_dssp             EEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGC------CTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred             cccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCcccccccc------ccCCcchheeccccccCCcEEEEEEcCC
Confidence                  45678999998 4566667789999999987764311100      0000111112233444455677889999


Q ss_pred             --CCEEEEeecCCeEEEEecc
Q 048118          283 --GSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       283 --~~~l~~gs~Dg~v~~w~~~  301 (303)
                        +.+|++|+.||.|++||+.
T Consensus       297 ~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          297 FWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             TTSSEEEEECTTSCEEEEECC
T ss_pred             CCCcEEEEEecCCcEEEEECC
Confidence              9999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=3e-27  Score=200.07  Aligned_cols=205  Identities=17%  Similarity=0.255  Sum_probs=162.8

Q ss_pred             cccCCEEEEEEeeC---CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc------CCCCCCEEEEEeCCC
Q 048118           79 GHTKDVLSVAFSID---NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS------PNTLQPTIVSASWDR  149 (303)
Q Consensus        79 ~h~~~i~~i~~~~~---~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~dg  149 (303)
                      +|...|.+++|+|+   +.++++++.|+.|++|+...... .......|...|.++.|.      |++  ..+++++.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~s~~~--~~l~~~~~d~  139 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-PVYSVKGHKEIINAIDGIGGLGIGEGA--PEIVTGSRDG  139 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-CSEEECCCSSCEEEEEEESGGGCC-CC--CEEEEEETTS
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-cEEEEEecccceEEEeeccccccCCCc--cEEEEEeCCC
Confidence            78899999999998   69999999999999999865431 122234678889999664      443  5899999999


Q ss_pred             cEEEEECCCce-eEEEEcCCCC----CeeEEE----ECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcC
Q 048118          150 TVKVWNLSNCK-LRATLAGHTG----YVNTVA----VSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP  220 (303)
Q Consensus       150 ~i~iwd~~~~~-~~~~~~~~~~----~i~~~~----~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~  220 (303)
                      .|++||+.+++ ....+..|.+    .+.+++    |+|++++|++++.|+.|++||+++++..........+.+++|+|
T Consensus       140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDR  219 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESC
T ss_pred             eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCC
Confidence            99999998876 6677765554    788888    78999999999999999999999998877777778999999999


Q ss_pred             ---CCeE-EEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeE
Q 048118          221 ---NRYW-LCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVI  295 (303)
Q Consensus       221 ---~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v  295 (303)
                         ++.+ ++++.++.|++||+++++.+..+..               .....+...+.+++|+|+++ +|++|+.||.|
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  284 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS---------------VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL  284 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE---------------EEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceee---------------eccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence               6654 4556799999999876544332221               01224555678899999998 89999999999


Q ss_pred             EEEecc
Q 048118          296 RVWGIG  301 (303)
Q Consensus       296 ~~w~~~  301 (303)
                      ++||+.
T Consensus       285 ~iwd~~  290 (357)
T 3i2n_A          285 HLWKYE  290 (357)
T ss_dssp             EEEEEE
T ss_pred             EEeecC
Confidence            999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=4.2e-27  Score=205.09  Aligned_cols=220  Identities=24%  Similarity=0.418  Sum_probs=172.5

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      ......+.+|...|++++|+|.+..+|++|+.||+|++|++.........                +.+...+.+|...|
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------~~~~~~~~~h~~~v  234 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV----------------IDAKNIFTGHTAVV  234 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE----------------EECSEEECCCSSCE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce----------------eccceeecCCCCCE
Confidence            44556788999999999999987669999999999999999753221110                00112355789999


Q ss_pred             EEEEEee-CCCEEEEEeCCCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-cee
Q 048118           85 LSVAFSI-DNRQIVSASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKL  161 (303)
Q Consensus        85 ~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~  161 (303)
                      .+++|+| ++.+|++++.|+.|++||+.... .........|...|.+++|+|++ ...+++|+.||.|++||+++ .+.
T Consensus       235 ~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~  313 (430)
T 2xyi_A          235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLK  313 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSC
T ss_pred             eeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCC
Confidence            9999999 67899999999999999986431 11112223577889999999976 34789999999999999987 566


Q ss_pred             EEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCC--------------CceEEEec-CCCeEEEEEEcCCCe-E
Q 048118          162 RATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAE--------------GKRLYSLD-AGAVIHALCFSPNRY-W  224 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~--------------~~~~~~~~-~~~~v~~~~~s~~~~-~  224 (303)
                      ...+..|...|++++|+|+++ +|++++.|++|++||+..              .+.+.... +...|++++|+|++. +
T Consensus       314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  393 (430)
T 2xyi_A          314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI  393 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred             eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence            788888999999999999885 789999999999999986              24444443 356799999999986 4


Q ss_pred             -EEEEcCCcEEEEeCCCC
Q 048118          225 -LCAATEQSIKIWDLESK  241 (303)
Q Consensus       225 -l~~~~~~~i~iwd~~~~  241 (303)
                       ++++.|+.|++|++...
T Consensus       394 l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          394 ICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEETTSEEEEEEECHH
T ss_pred             EEEEECCCCEEEeEcccc
Confidence             45567999999998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=3.1e-26  Score=197.23  Aligned_cols=218  Identities=22%  Similarity=0.314  Sum_probs=168.3

Q ss_pred             eecccCCEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeee-----------cCCCCccceEEEEEcCCCCCCEEEE
Q 048118           77 FVGHTKDVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQ-----------EGDAHTEWVSCVRFSPNTLQPTIVS  144 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~  144 (303)
                      +.+|.+.|.+++|+| ++.+|++++.|+.|++|+..........           ....|...|.+++|+|+. ...+++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s  117 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD-TGMFTS  117 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC-TTCEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC-CcEEEE
Confidence            356999999999999 9999999999999999998543221111           112478889999999954 247899


Q ss_pred             EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC---CEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcC
Q 048118          145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG---SLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSP  220 (303)
Q Consensus       145 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~  220 (303)
                      ++.|+.|++||+.+++....+. +...+.++.++|.+   .++++++.|+.|++||+++++.+..+. ....+.+++|+|
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred             EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence            9999999999999988877766 67789999999854   499999999999999999988877775 467899999999


Q ss_pred             CCe--EEEEEcCCcEEEEeCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          221 NRY--WLCAATEQSIKIWDLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       221 ~~~--~l~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      ++.  +++++.|+.|++||++++.. +..+....     .............+...+.+++|+|++.+|++|+.||.|++
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVRRASGCLITLDQHN-----GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT-----TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCCcccccccccc-----cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            975  44667799999999987652 22221100     00011111222445667889999999999999999999999


Q ss_pred             Eecc
Q 048118          298 WGIG  301 (303)
Q Consensus       298 w~~~  301 (303)
                      ||+.
T Consensus       272 wd~~  275 (408)
T 4a11_B          272 WNSS  275 (408)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1e-26  Score=200.26  Aligned_cols=288  Identities=12%  Similarity=0.068  Sum_probs=167.0

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccc--ce--eeeeecCCCcceEEEEeCCCCc--eecccCCE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTY--GV--ARRRLTGHSHFVQDVVLSSDGQ--FVGHTKDV   84 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~--~~~h~~~i   84 (303)
                      ++.+...+.-....|...++++ ++.|+.|++|+........  +.  .....-.+...+..+.+.+...  ...|...+
T Consensus        14 l~~~p~~~~w~~~~~~~~~l~a-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (393)
T 4gq1_A           14 LNVRPYTTTWCSQSPSCSNLLA-IGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDG   92 (393)
T ss_dssp             TTCCEEEEEECTTSGGGTTEEE-EEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC------
T ss_pred             CCCCCeEEEEeCCCCCCCCEEE-EECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCc
Confidence            4444433333334555555544 5567889999875432110  11  1111112334455555554332  22455556


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceee---eeecCCCCccceEEEEEcCCC------CCCEEEEEeCCCcEEEEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKY---TIQEGDAHTEWVSCVRFSPNT------LQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~dg~i~iwd  155 (303)
                      ....+.+++.++++++.|++|+|||.......   ......+|...|.+++|+|..      ....|++++.|++|++||
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            66667778889999999999999997654322   233456799999999999721      124799999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEec--------------------------
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLD--------------------------  208 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~--------------------------  208 (303)
                      +.++.....+..|...+.+++|+|++. +|++++.|++|++||+++++......                          
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence            988877777788889999999999874 79999999999999998876432211                          


Q ss_pred             CCCeEEEEEEc-CCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC--CCC
Q 048118          209 AGAVIHALCFS-PNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV--DGS  284 (303)
Q Consensus       209 ~~~~v~~~~~s-~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--~~~  284 (303)
                      ....+.++.|+ |++..+ +++.|+.+++||+..++....+............. ........ ..+.....|+|  ++.
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL-PNVQGISL-FPSLLGACPHPRYMDY  330 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS-CSEEEECS-SCCSSCCEECSSCTTE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc-cccccccc-cCcceeEEEccCCCCE
Confidence            12346677776 676554 55678999999998776554443211110000000 00000011 11112233444  344


Q ss_pred             EEEEeecCCeEEEEecc
Q 048118          285 TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       285 ~l~~gs~Dg~v~~w~~~  301 (303)
                      ++++|+.||+|++||+.
T Consensus       331 ~~~sgs~Dg~V~lwd~~  347 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTY  347 (393)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCEEEEEECC
Confidence            67889999999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=3.9e-25  Score=184.18  Aligned_cols=233  Identities=20%  Similarity=0.376  Sum_probs=174.4

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      .++|+|+++  ++||+| .|++|+|||...++.     ...+                ++.+|...|.+++|+|++++++
T Consensus        28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~-----~~~~----------------~~~~~~~~V~~v~~~~~~~~l~   83 (318)
T 4ggc_A           28 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDI-----LQLL----------------QMEQPGEYISSVAWIKEGNYLA   83 (318)
T ss_dssp             CBCEEECTT--SEEEEE-ETTEEEEEETTTCCE-----EEEE----------------ECCSTTCCEEEEEECTTSSEEE
T ss_pred             ceEEEECCC--CEEEEE-eCCEEEEEECCCCCE-----EEEE----------------EecCCCCeEEEEEECCCCCEEE
Confidence            367899975  466655 599999999875432     1111                1235788899999999999999


Q ss_pred             EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc-eeEEEEcCCCCCeeEEE
Q 048118           98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC-KLRATLAGHTGYVNTVA  176 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~  176 (303)
                      +|+.|+.|++|+........  ....|...+.++.+.+    ..+++++.++.+++|+.... .....+.+|...+..+.
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~--~~~~h~~~~~~~~~~~----~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLR--NMTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR  157 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             EEECCCcEEEeecCCceeEE--EecCccceEEEeecCC----CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence            99999999999986543322  2235667777776654    36899999999999998765 45667888999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceEE-----EecCCCeEEEEEEcCCC-eEEE--E-EcCCcEEEEeCCCCceeeee
Q 048118          177 VSPDGSLCASGGKDGVILLWDLAEGKRLY-----SLDAGAVIHALCFSPNR-YWLC--A-ATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~s~~~-~~l~--~-~~~~~i~iwd~~~~~~~~~~  247 (303)
                      +++++++|++++.|++|++||+++++...     .......+..++++|++ .++.  . +.++.|++||.+........
T Consensus       158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred             EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence            99999999999999999999998765321     22345678999999875 3332  2 24688999999877654322


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe--ecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG--YTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g--s~Dg~v~~w~~~  301 (303)
                      .                     +...+..+.|+|++..++++  +.||.|++||+.
T Consensus       238 ~---------------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~  272 (318)
T 4ggc_A          238 D---------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  272 (318)
T ss_dssp             E---------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             c---------------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence            1                     12234668899999887765  489999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.3e-25  Score=185.04  Aligned_cols=214  Identities=17%  Similarity=0.121  Sum_probs=150.3

Q ss_pred             ceeeeecCCC---CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce----ecccCCEEEEEE
Q 048118           17 MVTAIATPID---NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF----VGHTKDVLSVAF   89 (303)
Q Consensus        17 ~v~~v~~~~~---~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~h~~~i~~i~~   89 (303)
                      .|..++++|+   -+.++++++.  .+++|.+..+    ........+|+..|.-..++++++.    .+|...+..++|
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g----~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKR----RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF  186 (356)
T ss_dssp             EEEEECC------CCEEEEEEEE--EEEEEEETTT----EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE
T ss_pred             ceEEEEECCCccccccEEEeCCC--eEEEEecCCC----cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe
Confidence            4555566654   0356777664  4888987432    1122224678999999999998865    478889999999


Q ss_pred             ee---CCCEEEEEeCCCcEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCC----------EEEEEeCCCcEEEEE
Q 048118           90 SI---DNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQP----------TIVSASWDRTVKVWN  155 (303)
Q Consensus        90 ~~---~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~dg~i~iwd  155 (303)
                      ++   ++.+|++++.|++|+|||+... ....+.....+...+.+++|+|++...          .+++|+.|++|++||
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            99   7799999999999999998743 334443222234467788999976210          136788999999999


Q ss_pred             CCCceeEEEE-----cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-C-eEEEEEEcCCCeEEEE-
Q 048118          156 LSNCKLRATL-----AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-A-VIHALCFSPNRYWLCA-  227 (303)
Q Consensus       156 ~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~-~v~~~~~s~~~~~l~~-  227 (303)
                      ..+++....+     .+|...+.+..++  +..+++++.|++|++||+.+++.+.++... . .+.+++|+|++.+|++ 
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred             CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence            9998876654     3666655544444  788999999999999999999999998632 3 3456899999976654 


Q ss_pred             EcCCcEEEEeC
Q 048118          228 ATEQSIKIWDL  238 (303)
Q Consensus       228 ~~~~~i~iwd~  238 (303)
                      +.|+.|++||+
T Consensus       345 S~D~TIklWd~  355 (356)
T 2w18_A          345 QKDGNIFVYHY  355 (356)
T ss_dssp             CTTSCEEEEEE
T ss_pred             ECCCcEEEecC
Confidence            56999999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1e-24  Score=187.21  Aligned_cols=223  Identities=15%  Similarity=0.180  Sum_probs=171.3

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE-EEEeCCCcEEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKL  107 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t~~~d~~i~v  107 (303)
                      .++++++.|+.|++||+.....     ...                  +..| ..+.+++|+|+++++ ++++.|+.|++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-----~~~------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v   58 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-----TAT------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSI   58 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-----EEE------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-----EEE------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEE
Confidence            4789999999999999865321     111                  1223 457899999999876 67779999999


Q ss_pred             EecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEE-EE
Q 048118          108 WNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC-AS  186 (303)
Q Consensus       108 w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~  186 (303)
                      ||...........  . ...+.+++|+|++. ..++++..++.|++||+.+++....+..+ ..+.+++|+|+++.+ ++
T Consensus        59 ~d~~~~~~~~~~~--~-~~~v~~~~~spdg~-~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~  133 (391)
T 1l0q_A           59 IDTATNNVIATVP--A-GSSPQGVAVSPDGK-QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT  133 (391)
T ss_dssp             EETTTTEEEEEEE--C-SSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE
T ss_pred             EECCCCeEEEEEE--C-CCCccceEECCCCC-EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE
Confidence            9986543322221  1 22789999999863 23455667799999999999888777754 468999999999977 67


Q ss_pred             EeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccce
Q 048118          187 GGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT  264 (303)
Q Consensus       187 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (303)
                      ++.|+.|++||+.+++.+..+.....+..++|+|++..+ ++ ..++.|++||+++++.+..+..               
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---------------  198 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---------------  198 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---------------
T ss_pred             eCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---------------
Confidence            788999999999999988888777778999999998655 33 4578999999998876544321               


Q ss_pred             eeccccceeEEEEEEcCCCCEEEEee---cCCeEEEEecc
Q 048118          265 TTIKKKNIYCTSLNWSVDGSTLFSGY---TDGVIRVWGIG  301 (303)
Q Consensus       265 ~~~~~~~~~~~~~~~sp~~~~l~~gs---~Dg~v~~w~~~  301 (303)
                            ...+..++|+|++++|++++   .|+.|++||+.
T Consensus       199 ------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          199 ------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             ------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             ------CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence                  12346789999999999888   69999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=5.6e-25  Score=186.89  Aligned_cols=200  Identities=15%  Similarity=0.161  Sum_probs=145.1

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.+|.+.|.+++|+|+|.+|++|+.++ +++|+...........    ...+..+.+.++. ...+++++.|+.|++||.
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE----MRHLSKVRMLHRT-NYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE----CSCCCEEEECTTS-SEEEEECSSTTEEEEEET
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee----cCCeEEEEEcCCC-CEEEEEECCccEEEEEEC
Confidence            356899999999999999999988765 7899976433222111    1136667777764 234467888899999999


Q ss_pred             CCceeEEEEcCCCCCeeEEEECCCC-----------------------------------CEEEE--EeCCCeEEEEeCC
Q 048118          157 SNCKLRATLAGHTGYVNTVAVSPDG-----------------------------------SLCAS--GGKDGVILLWDLA  199 (303)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~l~~--~~~d~~v~iwd~~  199 (303)
                      .+++....+. +...|.+++++++.                                   .++++  |+.||.|++||++
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECC
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECC
Confidence            9998887776 55688888887653                                   23333  4678888888887


Q ss_pred             CCc---------------e-EEEe-cCCCeEEEEEEcCCCeEEEE-EcCCc-EEEEeCCCCceeeeeeeccccccccccC
Q 048118          200 EGK---------------R-LYSL-DAGAVIHALCFSPNRYWLCA-ATEQS-IKIWDLESKSIVEDLKVDLKTEAEKSEA  260 (303)
Q Consensus       200 ~~~---------------~-~~~~-~~~~~v~~~~~s~~~~~l~~-~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (303)
                      +++               + +..+ .+...|.+++|+|++.++++ +.|+. |++||+++++.+..+..           
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~-----------  236 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR-----------  236 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC-----------
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-----------
Confidence            654               1 3344 34578999999999876655 56898 99999998877654431           


Q ss_pred             ccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          261 TTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                             ..+...+.+++|+|++++|++|+.||+|++||+.
T Consensus       237 -------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          237 -------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             -------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             -------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence                   0134567889999999999999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=5.9e-24  Score=184.26  Aligned_cols=241  Identities=11%  Similarity=0.111  Sum_probs=174.8

Q ss_pred             ccccccccceeeeecCCC-------------CCcEEEEecCC------CcEEEEEcccCccccceeeeeecCCCcceEEE
Q 048118            9 GTMRAHTDMVTAIATPID-------------NSDMIVTASRD------KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV   69 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~-------------~~~~~~t~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~   69 (303)
                      ..+.+|...+..+++.+.             -...++.++.+      +.|++||......      .            
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------~------------  172 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------F------------  172 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------E------------
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------E------------
Confidence            346777777776666541             02456666654      7999999853211      0            


Q ss_pred             EeCCCCceecccCCEEEEEEeeCCCEEEEEeCCC---cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE-EE
Q 048118           70 VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDR---TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV-SA  145 (303)
Q Consensus        70 ~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~  145 (303)
                            .+.+|...+.+++|+|+|++|++++.|+   .|++||+.+.....+.   .+...+.+++|+|++.  .++ ++
T Consensus       173 ------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~---~~~~~~~~~~~spdg~--~la~~~  241 (415)
T 2hqs_A          173 ------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGS--KLAFAL  241 (415)
T ss_dssp             ------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---CCSSCEEEEEECTTSS--EEEEEE
T ss_pred             ------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee---cCCCcccCEEEcCCCC--EEEEEE
Confidence                  2346788999999999999999999885   9999998654333322   3455789999999873  454 66


Q ss_pred             eCCCc--EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC--eEEEEeCCCCceEEEecCCCeEEEEEEcC
Q 048118          146 SWDRT--VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG--VILLWDLAEGKRLYSLDAGAVIHALCFSP  220 (303)
Q Consensus       146 ~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~  220 (303)
                      +.++.  |++||+.+++. ..+..|...+.+++|+|+|+.|++++. ++  +|.+||+.+++..........+.+++|+|
T Consensus       242 ~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp  320 (415)
T 2hqs_A          242 SKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSS  320 (415)
T ss_dssp             CTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECT
T ss_pred             ecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECC
Confidence            66655  99999988775 467778889999999999999988876 44  78888998776433233456788999999


Q ss_pred             CCeEEEEEc-C---CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC---
Q 048118          221 NRYWLCAAT-E---QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG---  293 (303)
Q Consensus       221 ~~~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg---  293 (303)
                      ++.+|+.+. +   ..|++||+++++... +.                    .+. .+.+++|+|+|++|++++.|+   
T Consensus       321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~--------------------~~~-~~~~~~~spdg~~l~~~s~~~~~~  378 (415)
T 2hqs_A          321 DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS--------------------STF-LDETPSLAPNGTMVIYSSSQGMGS  378 (415)
T ss_dssp             TSSEEEEEEECSSCEEEEEEETTTCCEEE-CC--------------------CSS-SCEEEEECTTSSEEEEEEEETTEE
T ss_pred             CCCEEEEEECcCCceEEEEEECCCCCEEE-ec--------------------CCC-CcCCeEEcCCCCEEEEEEcCCCcc
Confidence            998776554 2   489999998876521 11                    011 346789999999999988887   


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      .|.+||+.
T Consensus       379 ~l~~~d~~  386 (415)
T 2hqs_A          379 VLNLVSTD  386 (415)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            79999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=8.3e-23  Score=177.65  Aligned_cols=197  Identities=14%  Similarity=0.113  Sum_probs=156.9

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee---cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ---EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      ..+.+++|+|++.++++++.|+.|++||..........   ....|...+.+++|+|++  ..+++++.|+.|++||+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCC
Confidence            34568999997778888888999999998643322211   123566789999998875  4788999999999999999


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCCEEE-EEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--------
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGSLCA-SGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--------  229 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------  229 (303)
                      ++....+..|...+.+++|+|+++.++ +++.|+.|++||+++++.+..+.....+.+++|+|++..++++.        
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~  280 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQES  280 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcccc
Confidence            888888888889999999999999875 45579999999999999888887778899999999986655443        


Q ss_pred             -CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE-EEEeecCCeEEEEecc
Q 048118          230 -EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGIG  301 (303)
Q Consensus       230 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~gs~Dg~v~~w~~~  301 (303)
                       ++.|++||+++++.+..+..                     ...+..++|+|+++. +++++.|+.|++||+.
T Consensus       281 ~dg~i~~~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          281 GGGRLGIYSMDKEKLIDTIGP---------------------PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             CCEEEEEEETTTTEEEEEEEE---------------------EECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEECCCCcEEeeccC---------------------CCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence             77999999998876543321                     123467899999975 5677999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=4.3e-23  Score=178.86  Aligned_cols=238  Identities=14%  Similarity=0.132  Sum_probs=167.1

Q ss_pred             cceeeeecCCCCCcEEEEec----CCC----cEEEEEc--ccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118           16 DMVTAIATPIDNSDMIVTAS----RDK----SIIVWHL--TKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s----~d~----~i~iw~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ..+....|.+.+.+++++|+    .||    ++++||+  .......   ...                  +.+|...+.
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~---~~~------------------~~~~~~~~~  121 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA---QNS------------------YKVNKQWLR  121 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---EEE------------------EEECGGGHH
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---eeE------------------EEcChhHHH
Confidence            45677788888888898987    567    8999998  6543211   111                  223333333


Q ss_pred             EEEEee--------------CCCEEEEEeCC------CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE
Q 048118           86 SVAFSI--------------DNRQIVSASRD------RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA  145 (303)
Q Consensus        86 ~i~~~~--------------~~~~l~t~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  145 (303)
                      .+++++              .+..++.++.+      +.|++||..+.....+.   .|...+.+++|+|++  ..++++
T Consensus       122 ~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~---~~~~~v~~~~~Spdg--~~la~~  196 (415)
T 2hqs_A          122 YAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDG--SKLAYV  196 (415)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE---EESSCEEEEEECTTS--SEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe---CCCCcceeeEEcCCC--CEEEEE
Confidence            333332              25566666554      79999998754333332   356679999999987  468888


Q ss_pred             eCCC---cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEE-EEeCCC--eEEEEeCCCCceEEEecCCCeEEEEEEc
Q 048118          146 SWDR---TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA-SGGKDG--VILLWDLAEGKRLYSLDAGAVIHALCFS  219 (303)
Q Consensus       146 ~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s  219 (303)
                      +.++   .|++||+.+++.. .+..|...+.+++|+|+|+.|+ +++.++  .|++||+.+++..........+.+++|+
T Consensus       197 s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s  275 (415)
T 2hqs_A          197 TFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF  275 (415)
T ss_dssp             ECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEEC
T ss_pred             EecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEEC
Confidence            8775   9999999988765 4667788999999999999887 666555  4999999887764333445678999999


Q ss_pred             CCCeEEEEEc--CC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC---
Q 048118          220 PNRYWLCAAT--EQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD---  292 (303)
Q Consensus       220 ~~~~~l~~~~--~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D---  292 (303)
                      |++..++.++  ++  .|++||+++++... +                    ..+...+.+++|+|+|++|++++.+   
T Consensus       276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l--------------------~~~~~~~~~~~~spdG~~l~~~~~~~g~  334 (415)
T 2hqs_A          276 PDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I--------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQ  334 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTSSCCEE-C--------------------CCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             CCCCEEEEEECCCCCcEEEEEECCCCCEEE-E--------------------ecCCCcccCeEECCCCCEEEEEECcCCc
Confidence            9998666554  33  68888988765321 1                    1112345678999999999988875   


Q ss_pred             CeEEEEecc
Q 048118          293 GVIRVWGIG  301 (303)
Q Consensus       293 g~v~~w~~~  301 (303)
                      +.|++||+.
T Consensus       335 ~~i~~~d~~  343 (415)
T 2hqs_A          335 QHIAKQDLA  343 (415)
T ss_dssp             EEEEEEETT
T ss_pred             eEEEEEECC
Confidence            589999974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=3.4e-22  Score=173.96  Aligned_cols=214  Identities=11%  Similarity=0.087  Sum_probs=153.9

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..++.+++++.+ +++++++.|+ +++|+.......     .....+...+.  ...+ .....|.+.|.+++|+|++.+
T Consensus        37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~-----~~~~~~~~~~~--~~~~-~~~~~~~~~v~~l~~spdg~~  106 (434)
T 2oit_A           37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQ-----NKPGDDPNKIV--DKVQ-GLLVPMKFPIHHLALSCDNLT  106 (434)
T ss_dssp             SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCC-----CCTTCCTTCEE--ECCC-CEEECCSSCEEEEEECTTSCE
T ss_pred             CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhh-----cccccCccccc--ccCc-cccccCCCcccEEEEcCCCCE
Confidence            347788888765 5888888887 999986532110     00000000000  0001 112346778999999999999


Q ss_pred             EE----EEeCCCcEEEEecCCc---------eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           96 IV----SASRDRTIKLWNTLGE---------CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        96 l~----t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      |+    +++.|+.|++||+...         ..........|...|.+++|+|+. ...+++++.||.|++||++++...
T Consensus       107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~las~s~Dg~v~iwD~~~~~~~  185 (434)
T 2oit_A          107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-PSMVAVCLADGSIAVLQVTETVKV  185 (434)
T ss_dssp             EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-TTEEEEEETTSCEEEEEESSSEEE
T ss_pred             EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-CCEEEEEECCCeEEEEEcCCCcce
Confidence            99    8889999999997432         111233345678899999999974 357999999999999999988776


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeEEEEEc--CC-
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYWLCAAT--EQ-  231 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~--~~-  231 (303)
                      ....+|...|++++|+|+|++|++|+.||+|++||++ ++....+..        ...+.+++|++++.++++..  +| 
T Consensus       186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            6667788999999999999999999999999999998 554444321        12789999999988775543  32 


Q ss_pred             -----cEEEEeCCCC
Q 048118          232 -----SIKIWDLESK  241 (303)
Q Consensus       232 -----~i~iwd~~~~  241 (303)
                           .+++|+++..
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence                 3899999765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.8e-20  Score=157.04  Aligned_cols=252  Identities=12%  Similarity=0.113  Sum_probs=166.0

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +..+...+ .++++|++..+++++..++.|.+||.......    ..                  .+..+..+..+++|+
T Consensus        36 ~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~------------------~~~~~~~~~~~~~~s   92 (331)
T 3u4y_A           36 ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VV------------------AIQEGQSSMADVDIT   92 (331)
T ss_dssp             EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EE------------------EEEECSSCCCCEEEC
T ss_pred             EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EE------------------ecccCCCCccceEEC
Confidence            34444556 89999987655666666899999998654320    11                  112233444448999


Q ss_pred             eCCCEEEEEeCCC---cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc-EEEEECCCceeE----
Q 048118           91 IDNRQIVSASRDR---TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT-VKVWNLSNCKLR----  162 (303)
Q Consensus        91 ~~~~~l~t~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~-i~iwd~~~~~~~----  162 (303)
                      |++++++++..++   .|.+||...........   ......+++|+|++. ..+++...++. |.+|++......    
T Consensus        93 ~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~spdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A           93 PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP---IPYDAVGIAISPNGN-GLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---CCTTEEEEEECTTSS-CEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             CCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---CCCCccceEECCCCC-EEEEEecCCCceEEEEEECCCCcEeecC
Confidence            9999988555553   89999986543322221   122358899999873 35556666688 999998653321    


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEE-EeCCCeEEEEeCCCCce---EEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEE
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCAS-GGKDGVILLWDLAEGKR---LYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIW  236 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iw  236 (303)
                      ............++|+|+|+++++ +..++.|.+||+.+++.   +..+.....+..++|+|++.++.++  .++.|.+|
T Consensus       169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~  248 (331)
T 3u4y_A          169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNF  248 (331)
T ss_dssp             EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEE
T ss_pred             CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEE
Confidence            112223456789999999996654 44689999999998887   7777767777889999999865544  36789999


Q ss_pred             eCCCCce--eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEeccc
Q 048118          237 DLESKSI--VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIGR  302 (303)
Q Consensus       237 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~~  302 (303)
                      |++++++  +..+........             ........++|+|++++|++++ .++.|.+||+..
T Consensus       249 d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          249 NQLSGTLSFVKSFGHGLLIDP-------------RPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             ETTTTEEEEEEEEECCCCCCC-------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             ECCCCceeeecccccccccCC-------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            9998876  222211100000             0000114578999999876554 567999999853

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=5.6e-20  Score=154.46  Aligned_cols=244  Identities=10%  Similarity=0.129  Sum_probs=157.4

Q ss_pred             ccccceeeeecCCCCCcEEEEecCC-CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRD-KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      .|...+..++|+|++ +++++++.+ +.|++|++........ ....                  +.. .+.+..++|+|
T Consensus        35 ~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~------------------~~~-~~~~~~~~~s~   93 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALT-FAAE------------------SAL-PGSLTHISTDH   93 (343)
T ss_dssp             ECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE-EEEE------------------EEC-SSCCSEEEECT
T ss_pred             ecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCcee-eccc------------------ccc-CCCCcEEEEcC
Confidence            456678899999976 456666665 9999999862211100 0000                  111 12567899999


Q ss_pred             CCCEEEEEeC-CCcEEEEecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCCcEEEEECCC-ceeEE----
Q 048118           92 DNRQIVSASR-DRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDRTVKVWNLSN-CKLRA----  163 (303)
Q Consensus        92 ~~~~l~t~~~-d~~i~vw~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i~iwd~~~-~~~~~----  163 (303)
                      +++++++++. ++.|.+|++.... ........ ....+.+++|+|++  ..+++++ .++.|++||+.+ ++...    
T Consensus        94 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  170 (343)
T 1ri6_A           94 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDN--RTLWVPALKQDRICLFTVSDDGHLVAQDPA  170 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTS--SEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCC--CEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence            9998766664 8889999983111 11111111 22347789999986  3455555 899999999987 54432    


Q ss_pred             EEcC-CCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCC--Cce--EEEe---cC----CCeEEEEEEcCCCeEEE-EE-
Q 048118          164 TLAG-HTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAE--GKR--LYSL---DA----GAVIHALCFSPNRYWLC-AA-  228 (303)
Q Consensus       164 ~~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~--~~~--~~~~---~~----~~~v~~~~~s~~~~~l~-~~-  228 (303)
                      .+.. ....+..++|+|+++++++++ .++.+.+||+..  ++.  ...+   ..    ...+..++|+|++..++ +. 
T Consensus       171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence            2222 234678899999999775554 789999999953  322  2222   11    23567899999986554 33 


Q ss_pred             cCCcEEEEeCCC--Cc--eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEecc
Q 048118          229 TEQSIKIWDLES--KS--IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       229 ~~~~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~  301 (303)
                      .++.|.+||++.  +.  .+..+.                    ... .+..++|+|++++|++++ .|+.+.+|+++
T Consensus       251 ~~~~i~v~d~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          251 TASLITVFSVSEDGSVLSKEGFQP--------------------TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEE--------------------CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEEeeeec--------------------CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            578999999972  22  111111                    001 135689999999888777 68999999664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=5e-20  Score=164.57  Aligned_cols=247  Identities=11%  Similarity=0.087  Sum_probs=171.5

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEc--ccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHL--TKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      ++.++..+.. +..+.++|++ +++++++.|++|++||+  ....     ....+                  . +...+
T Consensus       171 ~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i------------------~-~g~~p  224 (543)
T 1nir_A          171 IVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPT-----KVAEI------------------K-IGIEA  224 (543)
T ss_dssp             EEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCE-----EEEEE------------------E-CCSEE
T ss_pred             EEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCc-----EEEEE------------------e-cCCCc
Confidence            4455553322 8899999875 68999999999999998  3321     11111                  1 23456


Q ss_pred             EEEEEee----CCCEEEEEe-CCCcEEEEecCCceee-eeecC----C---CC-ccceEEEEEcCCCCCCEEEEEeCCCc
Q 048118           85 LSVAFSI----DNRQIVSAS-RDRTIKLWNTLGECKY-TIQEG----D---AH-TEWVSCVRFSPNTLQPTIVSASWDRT  150 (303)
Q Consensus        85 ~~i~~~~----~~~~l~t~~-~d~~i~vw~~~~~~~~-~~~~~----~---~~-~~~i~~~~~~~~~~~~~~~~~~~dg~  150 (303)
                      ..++|+|    +|+++++++ .++.|.+||....... .+...    +   .| ...+..+.++|++. ..+++...++.
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~-~~~vs~~~~g~  303 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP-EFIVNVKETGK  303 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS-EEEEEETTTTE
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC-EEEEEECCCCe
Confidence            8899999    999998887 4899999997543222 22110    0   02 22578899999763 46778888999


Q ss_pred             EEEEECCCceeEE--EEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCceEEEecCC-----CeEEEEEEcCC-
Q 048118          151 VKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKRLYSLDAG-----AVIHALCFSPN-  221 (303)
Q Consensus       151 i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~s~~-  221 (303)
                      |.+||..+.+...  .+. +...+..+.|+|++++|++++ .+++|.+||+.+++.+..+...     .....+ ++|+ 
T Consensus       304 i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          304 VLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             EEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred             EEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC
Confidence            9999998755332  333 456688899999999876655 5899999999999888776532     112222 4676 


Q ss_pred             CeEEEEE--cCCcEEEEeCCC-------CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee--
Q 048118          222 RYWLCAA--TEQSIKIWDLES-------KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY--  290 (303)
Q Consensus       222 ~~~l~~~--~~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs--  290 (303)
                      +.+++++  .++.|.+||+.+       .+.+..++.                    +......+.++|++++|.+++  
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--------------------~g~~~~~v~~~pdg~~l~v~~~~  441 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--------------------QGGGSLFIKTHPKSSHLYVDTTF  441 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--------------------SCSCCCCEECCTTCCEEEECCTT
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--------------------CCCCceEEEcCCCCCcEEEecCC
Confidence            6666655  478999999987       555554432                    122234578999999999998  


Q ss_pred             -----cCCeEEEEeccc
Q 048118          291 -----TDGVIRVWGIGR  302 (303)
Q Consensus       291 -----~Dg~v~~w~~~~  302 (303)
                           .+++|.+||+..
T Consensus       442 ~~~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          442 NPDARISQSVAVFDLKN  458 (543)
T ss_dssp             CSSHHHHTCEEEEETTC
T ss_pred             CCCcccCceEEEEECCC
Confidence                 388999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=5.1e-20  Score=154.71  Aligned_cols=236  Identities=17%  Similarity=0.266  Sum_probs=154.3

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCC-CcEEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRD-RTIKL  107 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d-~~i~v  107 (303)
                      .++++++.|+.|++|++...... . ..                   ....|...+..++|+|+++++++++.+ +.|.+
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~-~-~~-------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~   64 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGAL-T-LT-------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA   64 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE-E-EE-------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCeEEEEEECCCCcE-E-Ee-------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEE
Confidence            45566688999999998532110 0 00                   012355677889999999988888886 89999


Q ss_pred             EecC--CceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-eCCCcEEEEECC---CceeEEEEcCCCCCeeEEEECCCC
Q 048118          108 WNTL--GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-SWDRTVKVWNLS---NCKLRATLAGHTGYVNTVAVSPDG  181 (303)
Q Consensus       108 w~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~  181 (303)
                      |++.  +...........+ ..+..++|+|++  ..++++ ..++.|.+||+.   ..+....+..+ ..+.+++|+|++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg  140 (343)
T 1ri6_A           65 YRIAPDDGALTFAAESALP-GSLTHISTDHQG--QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN  140 (343)
T ss_dssp             EEECTTTCCEEEEEEEECS-SCCSEEEECTTS--SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS
T ss_pred             EEecCCCCceeeccccccC-CCCcEEEEcCCC--CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC
Confidence            9985  2222212111112 256789999986  345444 458899999994   33444444443 458889999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCC-CceE------EEecCCCeEEEEEEcCCCeEE-EEE-cCCcEEEEeCCC--Cceeeeeee
Q 048118          182 SLCASGG-KDGVILLWDLAE-GKRL------YSLDAGAVIHALCFSPNRYWL-CAA-TEQSIKIWDLES--KSIVEDLKV  249 (303)
Q Consensus       182 ~~l~~~~-~d~~v~iwd~~~-~~~~------~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~--~~~~~~~~~  249 (303)
                      +++++++ .++.|++||+.+ ++..      ........+..++|+|++.++ +++ .++.|.+||++.  ++.......
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            9888777 899999999987 5432      122345578889999998755 444 578999999953  332111110


Q ss_pred             ccccccccccCccceeeccccceeEEEEEEcCCCCEEE-EeecCCeEEEEecc
Q 048118          250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF-SGYTDGVIRVWGIG  301 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~gs~Dg~v~~w~~~  301 (303)
                      ....      .      -......+..++|+|++++|+ ++..|+.|++|++.
T Consensus       221 ~~~~------~------~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          221 DMMP------E------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ECSC------T------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cccC------c------cccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            0000      0      001122456799999998777 55589999999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=6.7e-20  Score=153.60  Aligned_cols=225  Identities=15%  Similarity=0.178  Sum_probs=156.2

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC-CEEEEEEeeCCCEE-EEEeCCCcEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK-DVLSVAFSIDNRQI-VSASRDRTIK  106 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~l-~t~~~d~~i~  106 (303)
                      +++++++.+++|.+||....+..     ..+.                 .++.. .+..++|+|+++++ +++..++.|.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-----~~~~-----------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~   59 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-----KVIT-----------------IADAGPTPMVPMVAPGGRIAYATVNKSESLV   59 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-----EEEE-----------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-----EEEE-----------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence            57999999999999998653211     1110                 01111 36678999999765 5566678999


Q ss_pred             EEecCCceee-eeecCCC--CccceEEEEEcCCCCCCEEEEEe------------CCCcEEEEECCCceeEEEEcCCCCC
Q 048118          107 LWNTLGECKY-TIQEGDA--HTEWVSCVRFSPNTLQPTIVSAS------------WDRTVKVWNLSNCKLRATLAGHTGY  171 (303)
Q Consensus       107 vw~~~~~~~~-~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~  171 (303)
                      +||....... .+.....  +...+.+++|+|++  ..++++.            .++.|.+||+.+++....+.. ...
T Consensus        60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~  136 (337)
T 1pby_B           60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG--KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ  136 (337)
T ss_dssp             EEETTTCCEEEEEECCBTTEEEECTTCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred             EEECCCCCeEeeEEcCCcccccccccceEECCCC--CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence            9998543322 2221110  11245678999986  3455554            579999999998887766654 346


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-----------------------------------------
Q 048118          172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-----------------------------------------  210 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----------------------------------------  210 (303)
                      +..++|+|++++|+++  ++.|.+||+.+++.+..+...                                         
T Consensus       137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            7889999999988777  688999999887665433211                                         


Q ss_pred             --------------------------CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccce
Q 048118          211 --------------------------AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT  264 (303)
Q Consensus       211 --------------------------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (303)
                                                ..+..++|+|++.+++++ ++.|++||+++++.+..+...              
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~--------------  279 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP--------------  279 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS--------------
T ss_pred             cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC--------------
Confidence                                      123457889998777666 789999999887766544321              


Q ss_pred             eeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          265 TTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       265 ~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                             ..+.+++|+|++++|++++.|+.|++||+..
T Consensus       280 -------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          280 -------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             -------SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             -------CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence                   1134688999999999999999999999853

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.4e-20  Score=154.57  Aligned_cols=235  Identities=13%  Similarity=0.107  Sum_probs=159.7

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEccc-CccccceeeeeecCCCcceEEEEeCCCCceecc-cCCEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTK-EEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH-TKDVLSV   87 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h-~~~i~~i   87 (303)
                      .+..|...|.+++|+|++ ++|++++ ++.|.+|++.. ....     ..                  ..+| ...+.++
T Consensus        36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~-----~~------------------~~~~~~~~~~~~   90 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPE-----KV------------------DTGFATICNNDH   90 (297)
T ss_dssp             EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCE-----EC------------------CCTTCCCBCSCC
T ss_pred             eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCce-----Ee------------------ccccccccccce
Confidence            355688889999999976 5777776 78999999865 3221     00                  1122 3567789


Q ss_pred             EEeeCCCEEEEEe--CCCcEEEEec--CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC--CCcee
Q 048118           88 AFSIDNRQIVSAS--RDRTIKLWNT--LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL--SNCKL  161 (303)
Q Consensus        88 ~~~~~~~~l~t~~--~d~~i~vw~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~--~~~~~  161 (303)
                      +|+|+++++++++  .++..+||..  .+.....+   . ....+.+++|+|++. ..++++..++.+++|++  .+++ 
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~---~-~~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~~~~~~~-  164 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM---T-KNLPSYWHGWSPDGK-SFTYCGIRDQVFDIYSMDIDSGV-  164 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC---C-SSSSEEEEEECTTSS-EEEEEEEETTEEEEEEEETTTCC-
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe---e-cCCCccceEECCCCC-EEEEEECCCCceEEEEEECCCCc-
Confidence            9999999999998  4456666654  33222111   1 122378899999863 23447788999999985  3333 


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCC-CCceEEEec-CCCeEEEEEEcCCCeEEEEE-cC-------
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLA-EGKRLYSLD-AGAVIHALCFSPNRYWLCAA-TE-------  230 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~-------  230 (303)
                      ...+..+...+.+++|+|+++.|+.++ .++.+++|++. .+..+..+. ....+..++|+|++.+++.+ .+       
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            355666778899999999999887766 58999999886 444444543 34578889999998766544 33       


Q ss_pred             ----CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          231 ----QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       231 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                          +.|++||+++++.......                  ..+...+..++|+|++++|++++.|.
T Consensus       245 ~~~~~~l~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVETLFDL------------------FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEEEEEE------------------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCceEEEEEecCCCCceeeecc------------------CCCCcccccceECCCCCEEEEEEecc
Confidence                4699999987754322211                  11112234578999999998887764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.4e-19  Score=152.79  Aligned_cols=238  Identities=10%  Similarity=0.090  Sum_probs=166.9

Q ss_pred             cceeeeecCCCCCcEEEEecC------CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           16 DMVTAIATPIDNSDMIVTASR------DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      ..+..++++|++..++++...      ++.|.+||....+..     ...                   .....+..++|
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~-------------------~~~~~~~~~~~   96 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----QAI-------------------HNDLKPFGATI   96 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----EEE-------------------EESSCCCSEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----EEE-------------------ecCCCcceEEE
Confidence            456788999876544444433      568999998654321     110                   01223567899


Q ss_pred             eeCCCEE-EEEeCCCcEEEEecCCcee-eeeecCCCC------ccceEEEEEcCCCCCCEEEEE--eCCCcEEEEECCCc
Q 048118           90 SIDNRQI-VSASRDRTIKLWNTLGECK-YTIQEGDAH------TEWVSCVRFSPNTLQPTIVSA--SWDRTVKVWNLSNC  159 (303)
Q Consensus        90 ~~~~~~l-~t~~~d~~i~vw~~~~~~~-~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~--~~dg~i~iwd~~~~  159 (303)
                      +|+++++ ++...++.|.+||...... ..+......      ...+.++.|+|++.  .++.+  +.++.|.+||..++
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTT
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCC
Confidence            9999855 4555679999999864432 222221111      11267899999863  34443  35789999999999


Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-----CCeEEEEEEcCCCeEEEEE--cCCc
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----GAVIHALCFSPNRYWLCAA--TEQS  232 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~--~~~~  232 (303)
                      +....+..+...+..++|+|+++.+++++.++.+.+||+.+++.+..+..     ...+..++|+|++..+.++  .++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE  254 (353)
T ss_dssp             EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred             ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence            88888775556688899999999999999999999999999988776643     3457789999998654433  3589


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEecc
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~  301 (303)
                      |.+||.++++.+..+...                   .   ...++|+|+++++++++ .++.|.+||+.
T Consensus       255 v~~~d~~~~~~~~~~~~~-------------------~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          255 VLVVDTRNGNILAKVAAP-------------------E---SLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             EEEEETTTCCEEEEEECS-------------------S---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCcEEEEEEcC-------------------C---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            999999998877655421                   0   02478999999665554 79999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=7.8e-20  Score=150.02  Aligned_cols=219  Identities=14%  Similarity=0.113  Sum_probs=148.9

Q ss_pred             EecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC
Q 048118           33 TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG  112 (303)
Q Consensus        33 t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~  112 (303)
                      +++.|++|++||+......                        .+..|...|.+++|+|+++++++++ ++.|.+||..+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~------------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~   71 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR------------------------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAG   71 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE------------------------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSS
T ss_pred             CCCcceeEEEEeCCCCcee------------------------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCC
Confidence            4567899999998643211                        1234778899999999999999886 78999999865


Q ss_pred             -ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe--CCCcEEEE--ECCCceeEEEEcCCCCCeeEEEECCCCCEEE-E
Q 048118          113 -ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVW--NLSNCKLRATLAGHTGYVNTVAVSPDGSLCA-S  186 (303)
Q Consensus       113 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~  186 (303)
                       ........ ..+...+.+++|+|++  ..+++++  .++..++|  +..+++ ...+..+ ..+..++|+|+++.|+ +
T Consensus        72 ~~~~~~~~~-~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           72 DPSPEKVDT-GFATICNNDHGISPDG--ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             CCSCEECCC-TTCCCBCSCCEECTTS--SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEE
T ss_pred             CCCceEecc-ccccccccceEECCCC--CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEE
Confidence             43222221 1223567889999986  4677777  33445554  555544 3334433 3588899999999877 7


Q ss_pred             EeCCCeEEEEeCC--CCceEEEecCCCeEEEEEEcCCCeEEEE-E-cCCcEEEEeCC-CCceeeeeeeccccccccccCc
Q 048118          187 GGKDGVILLWDLA--EGKRLYSLDAGAVIHALCFSPNRYWLCA-A-TEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEAT  261 (303)
Q Consensus       187 ~~~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~-~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  261 (303)
                      ++.++.+++|++.  +++..........+.+++|+|++..++. + .++.+.+|+++ .+..+..               
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~---------------  211 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER---------------  211 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE---------------
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE---------------
Confidence            7789999999853  4443322344567899999999876554 3 37888888875 2222221               


Q ss_pred             cceeeccccceeEEEEEEcCCCCEEEEeecC-----------CeEEEEecc
Q 048118          262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-----------GVIRVWGIG  301 (303)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-----------g~v~~w~~~  301 (303)
                           +..+...+..++|+|++++|++++.+           +.|.+||+.
T Consensus       212 -----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          212 -----ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             -----CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             -----EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence                 12223456778999999999988876           569999874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=2.3e-20  Score=173.07  Aligned_cols=256  Identities=13%  Similarity=0.097  Sum_probs=168.8

Q ss_pred             cceeeeecCCCCCcEEEEecC-CC-----cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc-e--e---cccCC
Q 048118           16 DMVTAIATPIDNSDMIVTASR-DK-----SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ-F--V---GHTKD   83 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~--~---~h~~~   83 (303)
                      ..+..++|+|++ ++|++++. |+     +|++|++...+..     ..+..+...-..-.++.+.. .  .   .....
T Consensus        37 ~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           37 PTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTR-----LLVDSKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEE-----EEECGGGTC--------------------CCEE
T ss_pred             CCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCcee-----EccchhhcccccccccchhhhhhhhhhhccccC
Confidence            468999999976 57888888 88     8999998754321     11111100000000000000 0  0   00123


Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCc---eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGE---CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      |..++|+|+|++|++++. +.|.+||+.+.   ....+   ..+...+.+++|+|++  ..++.++ ++.|++||+.+++
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l---~~~~~~~~~~~~SPDG--~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL---THGEGFATDAKLSPKG--GFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC---CCSSSCEEEEEECTTS--SEEEEEE-TTEEEEEETTTTE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc---ccCCcccccccCCCCC--CEEEEEe-CCcEEEEecCCCC
Confidence            678999999999999887 89999998654   22222   2345668999999997  3566655 5699999998877


Q ss_pred             eEEEEcCCCCC----------------eeEEEECCCCCEEEEEeCCC---------------------------------
Q 048118          161 LRATLAGHTGY----------------VNTVAVSPDGSLCASGGKDG---------------------------------  191 (303)
Q Consensus       161 ~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~---------------------------------  191 (303)
                      .......+...                +..++|+|||++|++++.|+                                 
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            65544333332                47799999999999988765                                 


Q ss_pred             eEEEEeCCC-CceEEEe---cCCCeEEEEEEcCCCeEEEEEc------CCcEEEEeCCCCceeeeeeeccccccccccCc
Q 048118          192 VILLWDLAE-GKRLYSL---DAGAVIHALCFSPNRYWLCAAT------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEAT  261 (303)
Q Consensus       192 ~v~iwd~~~-~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (303)
                      .|.+||+.+ ++.....   .....+..++| |++..|+...      +..|++||+++++....+.....       . 
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-------~-  334 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP-------T-  334 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS-------S-
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC-------C-
Confidence            889999988 7654332   13457889999 9997766442      45799999998875543321100       0 


Q ss_pred             cceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                              ....+..++|+|||+++++++.||.+++|.+.
T Consensus       335 --------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          335 --------WVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             --------CCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             --------cCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence                    00012357899999999999999988888653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=1.5e-19  Score=152.25  Aligned_cols=232  Identities=13%  Similarity=0.100  Sum_probs=157.0

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE-EE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VS   98 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t   98 (303)
                      .++++++ ..++++++.+++|.+||......     ...+..                 +....+..++|+|+++++ ++
T Consensus         4 g~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~-----~~~~~~-----------------~~~~~~~~~~~s~dg~~~~v~   60 (349)
T 1jmx_B            4 GPALKAG-HEYMIVTNYPNNLHVVDVASDTV-----YKSCVM-----------------PDKFGPGTAMMAPDNRTAYVL   60 (349)
T ss_dssp             CCCCCTT-CEEEEEEETTTEEEEEETTTTEE-----EEEEEC-----------------SSCCSSCEEEECTTSSEEEEE
T ss_pred             cccccCC-CEEEEEeCCCCeEEEEECCCCcE-----EEEEec-----------------CCCCCCceeEECCCCCEEEEE
Confidence            4556654 57899999999999999865321     111110                 011135678999999865 45


Q ss_pred             EeCCCcEEEEecCCceeeeeecCCCC----ccceEEEEEcCCCCCCEEEEEeCC------------CcEEEEECCCce--
Q 048118           99 ASRDRTIKLWNTLGECKYTIQEGDAH----TEWVSCVRFSPNTLQPTIVSASWD------------RTVKVWNLSNCK--  160 (303)
Q Consensus        99 ~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~d------------g~i~iwd~~~~~--  160 (303)
                      +..++.|.+||..+............    ...+.+++|+|++  ..+++++.+            +.|.+||+.+++  
T Consensus        61 ~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           61 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG--KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS--SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             eCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC--CEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            56789999999865433221111110    2235678999986  356666644            899999998743  


Q ss_pred             -eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCC----------------------------
Q 048118          161 -LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA----------------------------  211 (303)
Q Consensus       161 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------------------------  211 (303)
                       ....+.. ...+.+++|+|+++ +++++.  .|.+||+.+++.+..+....                            
T Consensus       139 ~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (349)
T 1jmx_B          139 KPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  214 (349)
T ss_dssp             CCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             ceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence             2333433 34688899999999 555543  49999998887765553221                            


Q ss_pred             -----------------------------------------eEEEEEEcC-CCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          212 -----------------------------------------VIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       212 -----------------------------------------~v~~~~~s~-~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                                                               .+..++|+| ++..++++ ++.|++||+++++.+..+..
T Consensus       215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~  293 (349)
T 1jmx_B          215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL  293 (349)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC
T ss_pred             eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC
Confidence                                                     234567789 88777766 88999999998877655432


Q ss_pred             ccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      .                     ..+..++|+|++++|++++.++.|++||+..
T Consensus       294 ~---------------------~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          294 D---------------------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             S---------------------SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             C---------------------CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            1                     0124588999999988899999999999853

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=1.7e-20  Score=173.50  Aligned_cols=240  Identities=11%  Similarity=0.054  Sum_probs=162.4

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC---CEEEEEEeeCC
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK---DVLSVAFSIDN   93 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~---~i~~i~~~~~~   93 (303)
                      .+..++|+|++. ++++ +.|++|++|+.......     ..+                  ..|..   .|.+++|+|+|
T Consensus        18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~-----~~~------------------~~~~~~~~~v~~~~~SpDg   72 (723)
T 1xfd_A           18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTST-----VLI------------------EGKKIESLRAIRYEISPDR   72 (723)
T ss_dssp             CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCE-----EEE------------------CTTTTTTTTCSEEEECTTS
T ss_pred             cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEE-----EEe------------------ccccccccccceEEECCCC
Confidence            367889999764 6655 78999999998754321     111                  12222   47899999999


Q ss_pred             CEEEEEeCC---------CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           94 RQIVSASRD---------RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        94 ~~l~t~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      ++|++++.+         +.+.+||+.+.....+.....+...+..++|+|++.  .++.++. +.|++||+.+++....
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEE
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEE
Confidence            999999875         678899986543322332233444577899999973  4666554 7999999988876655


Q ss_pred             EcCCCCCe------------------eEEEECCCCCEEEEEeCCC----------------------------------e
Q 048118          165 LAGHTGYV------------------NTVAVSPDGSLCASGGKDG----------------------------------V  192 (303)
Q Consensus       165 ~~~~~~~i------------------~~~~~~~~~~~l~~~~~d~----------------------------------~  192 (303)
                      ...+...+                  .+++|+|||+.|++++.|+                                  .
T Consensus       150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  229 (723)
T 1xfd_A          150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS  229 (723)
T ss_dssp             ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred             ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence            55443333                  7899999999999887553                                  7


Q ss_pred             EEEEeCCCCceEEEecC-------CCeEEEEEEcCCCeEEEEEc-----CCcEEEEeCCCCceeeeeeeccccccccccC
Q 048118          193 ILLWDLAEGKRLYSLDA-------GAVIHALCFSPNRYWLCAAT-----EQSIKIWDLESKSIVEDLKVDLKTEAEKSEA  260 (303)
Q Consensus       193 v~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (303)
                      |++||+.+++....+..       ...+..++|+||+.+++...     +..|++||+.+++....+.....       .
T Consensus       230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-------~  302 (723)
T 1xfd_A          230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-------A  302 (723)
T ss_dssp             EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-------S
T ss_pred             EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-------C
Confidence            99999988875444442       35788999999998775542     24699999988875443221000       0


Q ss_pred             ccceeeccccceeEEEEEEcCCCCEEEE--eecCC------eEEEEe
Q 048118          261 TTATTTIKKKNIYCTSLNWSVDGSTLFS--GYTDG------VIRVWG  299 (303)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~--gs~Dg------~v~~w~  299 (303)
                      .     .   ......++|+|||+.|+.  +..||      .|.+||
T Consensus       303 ~-----~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          303 W-----L---HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             C-----C---CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             E-----E---eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            0     0   000024789999997764  55677      455566

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=2.8e-19  Score=150.99  Aligned_cols=247  Identities=13%  Similarity=0.140  Sum_probs=158.4

Q ss_pred             cccceeeeecCCCCCcEEEEecC--CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           14 HTDMVTAIATPIDNSDMIVTASR--DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      +...+..++|+|++. +++++..  ++.|.+|++......   ...                  .+..+...+..++|+|
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---~~~------------------~~~~~~~~p~~~a~sp   95 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---KLN------------------TVVAPGTPPAYVAVDE   95 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---EEE------------------EEEEESCCCSEEEEET
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---Eee------------------eeecCCCCCEEEEECC
Confidence            445677889998764 5555432  689999998533211   000                  1123455677899999


Q ss_pred             CCCEEEEEe-CCCcEEEEecCCc-eeeeee--cCCC-------CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC-Cc
Q 048118           92 DNRQIVSAS-RDRTIKLWNTLGE-CKYTIQ--EGDA-------HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS-NC  159 (303)
Q Consensus        92 ~~~~l~t~~-~d~~i~vw~~~~~-~~~~~~--~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~-~~  159 (303)
                      +|++|++++ .++.|.+|++... ....+.  ....       ....+.+++|+|++.  .+++...++.|++|++. ++
T Consensus        96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTS
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCC
Confidence            999888887 7789999997521 111111  1110       123478899999873  66667778899999998 45


Q ss_pred             eeE--EEEcCC-CCCeeEEEECCCCCEEEE-EeCCCeEEEEeCCC--Cce--EEEec---C----CCeEEEEEEcCCCeE
Q 048118          160 KLR--ATLAGH-TGYVNTVAVSPDGSLCAS-GGKDGVILLWDLAE--GKR--LYSLD---A----GAVIHALCFSPNRYW  224 (303)
Q Consensus       160 ~~~--~~~~~~-~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~--~~~--~~~~~---~----~~~v~~~~~s~~~~~  224 (303)
                      +..  ..+..+ ......++|+|+|+++++ +..++.+.+|++..  ++.  +..+.   .    ...+..++|+|++.+
T Consensus       174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            432  222222 235778999999996655 45689999999874  432  22221   1    146889999999976


Q ss_pred             EEE--EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC-CeEEEEecc
Q 048118          225 LCA--ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD-GVIRVWGIG  301 (303)
Q Consensus       225 l~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D-g~v~~w~~~  301 (303)
                      |++  ..++.|.+|++........+.                 .+..+...+..++|+|+|++|++++.+ +.|.+|+++
T Consensus       254 l~v~~~~~~~v~v~~~~~~g~~~~~~-----------------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADGHLTLIQ-----------------QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGGCEEEEE-----------------EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeE-----------------EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            533  347899999986332111111                 011111223568999999988887764 999999653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=2.9e-20  Score=161.83  Aligned_cols=202  Identities=12%  Similarity=0.110  Sum_probs=143.1

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--------eeee-----cCCCCccceEEEEEcCCCCCCEEE----EE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--------YTIQ-----EGDAHTEWVSCVRFSPNTLQPTIV----SA  145 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~----~~  145 (303)
                      .++.+++++++.++++++.|+ +++|+......        ....     ..-.+...|.+++|+|++  ..++    ++
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~~lav~~~sg  114 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN--LTLSACMMSS  114 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS--CEEEEEEEET
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC--CEEEEEEecc
Confidence            466789999999999999888 88886421000        0000     001234569999999986  4566    78


Q ss_pred             eCCCcEEEEECCCc--------e---eEEEEcCCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCe
Q 048118          146 SWDRTVKVWNLSNC--------K---LRATLAGHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAV  212 (303)
Q Consensus       146 ~~dg~i~iwd~~~~--------~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~  212 (303)
                      +.|+.|++||+.+.        +   ....+.+|...|.+++|+|+ +.+|++++.||+|++||+++++.+... .....
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998654        1   13455678999999999997 789999999999999999988665443 34568


Q ss_pred             EEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEE-ee
Q 048118          213 IHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFS-GY  290 (303)
Q Consensus       213 v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-gs  290 (303)
                      +.+++|+|++.+|+ ++.|+.|++||.+ ++....+......             -..+...+.++.|++++.++++ ++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~-------------~~~~~~~v~~v~w~~~~~~l~~~~~  260 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY-------------ESDHPVRVLDVLWIGTYVFAIVYAA  260 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC-------------CTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc-------------CCCCceeEEEEEEecCceEEEEEcc
Confidence            99999999986554 5578999999998 4443333211100             0123456788999998877654 44


Q ss_pred             cCCe------EEEEecc
Q 048118          291 TDGV------IRVWGIG  301 (303)
Q Consensus       291 ~Dg~------v~~w~~~  301 (303)
                      .||.      +++|++.
T Consensus       261 ~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          261 ADGTLETSPDVVMALLP  277 (434)
T ss_dssp             TTCCSSSCCEEEEEECC
T ss_pred             CCCccCCCCceEEEEec
Confidence            4543      8899874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=5.7e-19  Score=147.92  Aligned_cols=229  Identities=15%  Similarity=0.102  Sum_probs=154.6

Q ss_pred             cCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeC-
Q 048118           23 TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASR-  101 (303)
Q Consensus        23 ~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~-  101 (303)
                      |.+.....+++++.++.|.+||....+..     ..                  ...+...+ .++|+|+++++++++. 
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----~~------------------~~~~~~~~-~~~~s~dg~~l~~~~~~   60 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEIL-----NQ------------------ITLGYDFV-DTAITSDCSNVVVTSDF   60 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEE-----EE------------------EECCCCEE-EEEECSSSCEEEEEEST
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCccccee-----ee------------------EEccCCcc-eEEEcCCCCEEEEEeCC
Confidence            44555667999999999999998654321     10                  11123445 8999999996666655 


Q ss_pred             CCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC---cEEEEECCCceeEEEEcCCCCCeeEEEE
Q 048118          102 DRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR---TVKVWNLSNCKLRATLAGHTGYVNTVAV  177 (303)
Q Consensus       102 d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~  177 (303)
                      ++.|.+||...... ....  ..+..+..+++|+|++  ..++++..++   .|.+||+.+++....+..+ .....++|
T Consensus        61 ~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~  135 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAI--QEGQSSMADVDITPDD--QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI  135 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEE--EECSSCCCCEEECTTS--SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred             CCeEEEEECCCCceeEEec--ccCCCCccceEECCCC--CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence            88999999865432 1111  1223334448999986  3555444442   8999999998887777654 45689999


Q ss_pred             CCCCCEEEE-EeCCCe-EEEEeCCCCceE-----EEecCCCeEEEEEEcCCCeEE-EEE-cCCcEEEEeCCCCce---ee
Q 048118          178 SPDGSLCAS-GGKDGV-ILLWDLAEGKRL-----YSLDAGAVIHALCFSPNRYWL-CAA-TEQSIKIWDLESKSI---VE  245 (303)
Q Consensus       178 ~~~~~~l~~-~~~d~~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~---~~  245 (303)
                      +|+|+++++ ...++. +.+|++.....+     ..+........++|+|++.++ ++. .++.|.+||+++++.   +.
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence            999985544 455678 999998754332     223445567899999999744 333 478899999988876   43


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe-ecCCeEEEEecc
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGIG  301 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~~  301 (303)
                      .+..                     ...+..++|+|+|++|+++ ..++.|.+||+.
T Consensus       216 ~~~~---------------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          216 AVGT---------------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EEEC---------------------SSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             eccC---------------------CCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            3321                     0123458899999976655 468899999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=2.3e-20  Score=168.64  Aligned_cols=238  Identities=16%  Similarity=0.128  Sum_probs=157.7

Q ss_pred             ccceeeeecCCCCCcEEEEecC-CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc-CCEEEEEEeeC
Q 048118           15 TDMVTAIATPIDNSDMIVTASR-DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT-KDVLSVAFSID   92 (303)
Q Consensus        15 ~~~v~~v~~~~~~~~~~~t~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~-~~i~~i~~~~~   92 (303)
                      ...|++++++|++ ++||+++. |++++||++...+     ..                   ++..|. ..+..++|+|+
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~-----~~-------------------~lt~~~~~~~~~~~~spd   75 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGE-----TV-------------------KLNREPINSVLDPHYGVG   75 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTE-----EE-------------------ECCSSCCSEECEECTTCS
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCC-----cE-------------------eeecccccccccccCCCC
Confidence            4569999999986 57888877 9999999974221     11                   112233 46778899998


Q ss_pred             CCEEEEEeC---CCcEEEEec----CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           93 NRQIVSASR---DRTIKLWNT----LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        93 ~~~l~t~~~---d~~i~vw~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                       +++++++.   +...++|..    .+... .+...    ......+|+|++....++++. ++.+.+||+.+++.....
T Consensus        76 -~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~----~~~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~  148 (582)
T 3o4h_A           76 -RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV----KPMRILSGVDTGEAVVFTGAT-EDRVALYALDGGGLRELA  148 (582)
T ss_dssp             -EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS----CSBEEEEEEECSSCEEEEEEC-SSCEEEEEEETTEEEEEE
T ss_pred             -eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC----CCceeeeeCCCCCeEEEEecC-CCCceEEEccCCcEEEee
Confidence             77777765   455677654    22221 22111    123356788876443444444 445559999888765544


Q ss_pred             cCCCCCeeEEEECCCCCEEEEEeCC----CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE-cCC--cEEEEeC
Q 048118          166 AGHTGYVNTVAVSPDGSLCASGGKD----GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA-TEQ--SIKIWDL  238 (303)
Q Consensus       166 ~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~--~i~iwd~  238 (303)
                      ..+ .  .+++|+|||+.|++++.+    +.|++||+.+++..........+..++|||||.+++.+ .++  .|++||+
T Consensus       149 ~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          149 RLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             EES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             cCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            332 2  789999999999988877    78999999888765333445678999999999887754 356  7999999


Q ss_pred             CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          239 ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ++++.. .+......      ..    ...  ........|+|||.++++++.||++++|++
T Consensus       226 ~~~~~~-~~~~~~~~------~~----~~~--~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          226 RDGSVE-DLELPSKD------FS----SYR--PTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TTCCEE-ECCCSCSH------HH----HHC--CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCcEE-EccCCCcC------hh----hhh--hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            887654 22110000      00    000  011223459999999999999999999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=1.1e-18  Score=155.99  Aligned_cols=233  Identities=15%  Similarity=0.160  Sum_probs=164.3

Q ss_pred             ecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeC
Q 048118           22 ATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASR  101 (303)
Q Consensus        22 ~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~  101 (303)
                      .++|++ .++++++.|++|.+||....+.     ...+.                 .++.  +..++|+|+|+++++++.
T Consensus       144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~-----~~~i~-----------------~g~~--~~~v~~spdg~~l~v~~~  198 (543)
T 1nir_A          144 DLDLPN-LFSVTLRDAGQIALVDGDSKKI-----VKVID-----------------TGYA--VHISRMSASGRYLLVIGR  198 (543)
T ss_dssp             CCCGGG-EEEEEEGGGTEEEEEETTTCCE-----EEEEE-----------------CSTT--EEEEEECTTSCEEEEEET
T ss_pred             ccCCCC-EEEEEEcCCCeEEEEECCCceE-----EEEEe-----------------cCcc--cceEEECCCCCEEEEECC
Confidence            367754 6899999999999999865431     11111                 0222  788999999999999999


Q ss_pred             CCcEEEEec--CCcee-eeeecCCCCccceEEEEEcC----CCCCCEEEEEe-CCCcEEEEECCCceeEEEEcCC-----
Q 048118          102 DRTIKLWNT--LGECK-YTIQEGDAHTEWVSCVRFSP----NTLQPTIVSAS-WDRTVKVWNLSNCKLRATLAGH-----  168 (303)
Q Consensus       102 d~~i~vw~~--~~~~~-~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~-----  168 (303)
                      |+.|++||+  ..... ..+.    ....+..++|+|    ++  ..+++++ .++.|.+||..+.++...+..+     
T Consensus       199 d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg--~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~  272 (543)
T 1nir_A          199 DARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD  272 (543)
T ss_dssp             TSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred             CCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCC--CEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence            999999998  43222 2222    233478999999    76  3566655 5899999999998888777542     


Q ss_pred             ------CCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCCceEE--EecCCCeEEEEEEcCCCeEEE-EE-cCCcEEEEe
Q 048118          169 ------TGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEGKRLY--SLDAGAVIHALCFSPNRYWLC-AA-TEQSIKIWD  237 (303)
Q Consensus       169 ------~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd  237 (303)
                            ...+..+.++|++.. +++...+++|.+||..+.+.+.  .+.....+..++|+|++.++. ++ .++.|.+||
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                  236889999997765 4566679999999998765443  455566678899999987544 43 478999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEee-cCCeEEEEeccc
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSGY-TDGVIRVWGIGR  302 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~gs-~Dg~v~~w~~~~  302 (303)
                      +++++++..+.....+                |......+ ++|+ +..+++++ .|++|.+||+..
T Consensus       353 ~~tg~l~~~i~~g~~p----------------h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          353 SKDRRLSALVDVGKTP----------------HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             TTTTEEEEEEECSSSB----------------CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCCeEEEeeccCCCC----------------CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            9999887765431100                00011122 4677 56677765 689999999853

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=4e-18  Score=143.79  Aligned_cols=236  Identities=11%  Similarity=0.076  Sum_probs=164.5

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce-ecccCCEEEEEEeeCCC
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF-VGHTKDVLSVAFSIDNR   94 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~h~~~i~~i~~~~~~~   94 (303)
                      ..+..+.++|++..++++...++.|.+||....+..     ..+..+..          ... ......+..++|+|+++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~----------~~~~~~~~~~~~~~~~s~dg~  153 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-----GRLVLDDR----------KRTEEVRPLQPRELVADDATN  153 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----EEEESCCC----------CCCSSCCCCEEEEEEEETTTT
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE-----EEEecCCC----------ccccccCCCCCceEEECCCCC
Confidence            346778899887667778888899999998654321     11110000          000 00011267899999999


Q ss_pred             EEEEEe--CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC----C
Q 048118           95 QIVSAS--RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG----H  168 (303)
Q Consensus        95 ~l~t~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~----~  168 (303)
                      ++++++  .++.|.+||..........  ..+...+.++.|+|++  ..+++++.++.|.+||+.+++....+..    +
T Consensus       154 ~l~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  229 (353)
T 3vgz_A          154 TVYISGIGKESVIWVVDGGNIKLKTAI--QNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGK  229 (353)
T ss_dssp             EEEEEEESSSCEEEEEETTTTEEEEEE--CCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSS
T ss_pred             EEEEEecCCCceEEEEcCCCCceEEEe--cCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC
Confidence            777665  4788999998654332222  1123336778899986  4677788899999999999887776654    4


Q ss_pred             CCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEE-cCCcEEEEeCCCCceee
Q 048118          169 TGYVNTVAVSPDGSLCASGGK-DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAA-TEQSIKIWDLESKSIVE  245 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~~~  245 (303)
                      ...+..++|+|+++.+++++. ++.|.+||+.+++.+..+..... ..++|+|++..+ ++. .++.|.+||.++++.+.
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            456788999999997766654 59999999999988877765443 568999998644 444 47899999999888766


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD  292 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D  292 (303)
                      .+...                     ..+..++|+|++++|+++..+
T Consensus       309 ~~~~~---------------------~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          309 TFDTP---------------------THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEECC---------------------SEEEEEEECTTSCEEEEEEEC
T ss_pred             EEecC---------------------CCCCeEEEcCCCCEEEEEEcc
Confidence            54321                     134678999999987777665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=2.1e-19  Score=172.64  Aligned_cols=254  Identities=14%  Similarity=0.125  Sum_probs=182.6

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee------------
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV------------   78 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------   78 (303)
                      +.+|...+.++.|+++  .++++++.|+++++|.+......    ...+..+.. +....++|+++..            
T Consensus       199 l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~----~~~l~~~~~-~~~~~~SpDG~~la~~~~~~i~~~d  271 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD----LRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFN  271 (1045)
T ss_dssp             EECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS----CEECCCCCS-SCEEEEEESSSCEEEEETTEEEEEC
T ss_pred             CcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCc----ceEecCCCC-cceeeEcCCCCEEEEEeCCEEEEec
Confidence            4678889999999865  67788888999999987532211    111222221 2233455554311            


Q ss_pred             ---------------------cccCCEEEEEEe-eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCcc-ceEEEEEcC
Q 048118           79 ---------------------GHTKDVLSVAFS-IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTE-WVSCVRFSP  135 (303)
Q Consensus        79 ---------------------~h~~~i~~i~~~-~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~i~~~~~~~  135 (303)
                                           .|...+..++|+ |+|+++++++ ++.|.+|+........+   ..+.. .+..++|+ 
T Consensus       272 ~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          272 PDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             TTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC---SCCSCEEEEEECSS-
T ss_pred             CCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc---cCCCcceEEeeeEc-
Confidence                                 133468899999 9999998887 78899999765432222   23444 68889999 


Q ss_pred             CCCCCEEEEEeCCCcEE-EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe-cCCCeE
Q 048118          136 NTLQPTIVSASWDRTVK-VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVI  213 (303)
Q Consensus       136 ~~~~~~~~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v  213 (303)
                      ++  ..+++++.++.+. +||+.+++... +.+|...+..++|+|+|++|++++.++.|++||+.+++..... .....+
T Consensus       347 dg--~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v  423 (1045)
T 1k32_A          347 TK--VAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI  423 (1045)
T ss_dssp             SE--EEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC
T ss_pred             CC--CeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc
Confidence            65  3577777788888 89988766543 4477788999999999999999999999999999988876555 445667


Q ss_pred             EEEEEcCCCeEEEEEc-C----------CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118          214 HALCFSPNRYWLCAAT-E----------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD  282 (303)
Q Consensus       214 ~~~~~s~~~~~l~~~~-~----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  282 (303)
                      ..++|+|++.+++.+. +          +.|++||+.+++. ..+.                    .+...+..++|+|+
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~~l~--------------------~~~~~~~~~~~spd  482 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAAT--------------------TENSHDYAPAFDAD  482 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECS--------------------CSSSBEEEEEECTT
T ss_pred             cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-EEee--------------------CCCcccCCceEcCC
Confidence            8899999998776543 3          3899999987752 2221                    12223456889999


Q ss_pred             CCEEEEeecCCeEEEEec
Q 048118          283 GSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       283 ~~~l~~gs~Dg~v~~w~~  300 (303)
                      |++|++++.++..++|+.
T Consensus       483 G~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          483 SKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             SCEEEEEESCCCCCEECS
T ss_pred             CCEEEEEecccCCcCcch
Confidence            999999999988888864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=8.9e-17  Score=136.39  Aligned_cols=246  Identities=13%  Similarity=0.177  Sum_probs=154.4

Q ss_pred             cccceeeeecCCCCCcEEEEecCC----CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRD----KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      +...+..++|+|++ ++|++++.+    +.+.+|++......... ..                  ....+...+..+++
T Consensus        48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~-~~------------------~~~~~~~~p~~~~~  107 (361)
T 3scy_A           48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHL-LN------------------TQKTMGADPCYLTT  107 (361)
T ss_dssp             ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEE-EE------------------EEECSSSCEEEEEE
T ss_pred             cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEE-ee------------------EeccCCCCcEEEEE
Confidence            45567788999876 567777775    79999998653111100 00                  01123345566777


Q ss_pred             eeCCCEEEEEe-CCCcEEEEecCCceee-ee---ecC--------CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           90 SIDNRQIVSAS-RDRTIKLWNTLGECKY-TI---QEG--------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        90 ~~~~~~l~t~~-~d~~i~vw~~~~~~~~-~~---~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                        +++++++++ .++.|.+|++...... ..   ...        ..+...+.+++|+|++. ..+++...++.|++|++
T Consensus       108 --dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~v~~~  184 (361)
T 3scy_A          108 --NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK-YLLADDLGTDQIHKFNI  184 (361)
T ss_dssp             --CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS-EEEEEETTTTEEEEEEE
T ss_pred             --CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC-EEEEEeCCCCEEEEEEE
Confidence              777776665 6789999997532111 00   000        01122357899999873 24455556889999988


Q ss_pred             CCce-------eE------EEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCce--EEEec----CCCeEEEE
Q 048118          157 SNCK-------LR------ATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKR--LYSLD----AGAVIHAL  216 (303)
Q Consensus       157 ~~~~-------~~------~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~--~~~~~----~~~~v~~~  216 (303)
                      ....       +.      ............++|+|+|+++++++ .++.|.+||+.+++.  +..+.    .......+
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i  264 (361)
T 3scy_A          185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI  264 (361)
T ss_dssp             CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred             cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence            6432       21      11222345678899999999887776 689999999987643  22222    12346789


Q ss_pred             EEcCCCeEEEEE-c--CCcEEEEeCC--CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-
Q 048118          217 CFSPNRYWLCAA-T--EQSIKIWDLE--SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-  290 (303)
Q Consensus       217 ~~s~~~~~l~~~-~--~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-  290 (303)
                      +|+|++.+|+++ .  ++.|.+|++.  ++++......                  .. ...+..++|+|+|++|++++ 
T Consensus       265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~------------------~~-g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ------------------LT-GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE------------------EC-SSCCCEEEECTTSCEEEEEET
T ss_pred             EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe------------------cC-CCCCceEEECCCCCEEEEEEC
Confidence            999999866444 3  4789999985  3332111110                  00 11235689999999888887 


Q ss_pred             cCCeEEEEecc
Q 048118          291 TDGVIRVWGIG  301 (303)
Q Consensus       291 ~Dg~v~~w~~~  301 (303)
                      .++.|.+|.++
T Consensus       326 ~~~~v~v~~~d  336 (361)
T 3scy_A          326 DTNVIQIFERD  336 (361)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCCEEEEEEE
Confidence            67999998653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=5.3e-18  Score=156.46  Aligned_cols=254  Identities=13%  Similarity=0.152  Sum_probs=158.2

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCCcEEEEEccc-----CccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTK-----EEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      .+...+..++|+|++ ++|+++ .|+.|.+|++..     .+..     .....+...+..-.  +  .+..+...+.++
T Consensus       118 ~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~-----~~~~~~~~~~~~g~--~--~~~ee~~~~~~~  186 (706)
T 2z3z_A          118 DTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAI-----AVTIDGTETLVYGQ--A--VHQREFGIEKGT  186 (706)
T ss_dssp             CCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCE-----ESCSCCBTTEEESS--C--CGGGCTTCCCSE
T ss_pred             CCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcE-----EeccCCCCCeEccc--c--hhhhhcCCCceE
Confidence            344556777787765 456653 567788887754     2211     00000000000000  0  011112235789


Q ss_pred             EEeeCCCEEEEEe---------------------------------CCCcEEEEecCCceeeeeecCCCCccceEEEEEc
Q 048118           88 AFSIDNRQIVSAS---------------------------------RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS  134 (303)
Q Consensus        88 ~~~~~~~~l~t~~---------------------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~  134 (303)
                      .|+|+|++|++++                                 .+..|.+||+.+.....+.....+...+.+++|+
T Consensus       187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  266 (706)
T 2z3z_A          187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS  266 (706)
T ss_dssp             EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence            9999999999887                                 4467999998665433333223456678999999


Q ss_pred             CCCCCCEEEEEeCCC-----cEEEEECCCc-eeEEEEcC-CC---CCeeEEEECC--CCCEEEEEeCCCeEEEEeCC-CC
Q 048118          135 PNTLQPTIVSASWDR-----TVKVWNLSNC-KLRATLAG-HT---GYVNTVAVSP--DGSLCASGGKDGVILLWDLA-EG  201 (303)
Q Consensus       135 ~~~~~~~~~~~~~dg-----~i~iwd~~~~-~~~~~~~~-~~---~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~-~~  201 (303)
                      |++  ..+++++.++     .|++||+.++ ........ +.   ..+..+.|+|  +|+++++++.|+.+++|++. ++
T Consensus       267 pdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          267 PDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             TTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            987  3567666665     8999999888 43332221 22   2346789999  99999999999999999876 55


Q ss_pred             ceEEEecC-CCeEEE-EEEcCCCeEEE-EEc-CC----cEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118          202 KRLYSLDA-GAVIHA-LCFSPNRYWLC-AAT-EQ----SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       202 ~~~~~~~~-~~~v~~-~~~s~~~~~l~-~~~-~~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (303)
                      ..+..+.. ...+.. ++|+|++..++ ++. ++    .|+.||+++++. ..+.                     +...
T Consensus       345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~---------------------~~~~  402 (706)
T 2z3z_A          345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT---------------------PESG  402 (706)
T ss_dssp             CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC---------------------CSSS
T ss_pred             CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc---------------------CCCc
Confidence            55555543 334655 79999986554 333 33    677777766542 1111                     0112


Q ss_pred             EEEEEEcCCCCEEEEeecC----CeEEEEecc
Q 048118          274 CTSLNWSVDGSTLFSGYTD----GVIRVWGIG  301 (303)
Q Consensus       274 ~~~~~~sp~~~~l~~gs~D----g~v~~w~~~  301 (303)
                      +.+++|||+|++|+.++.+    +.+.+||+.
T Consensus       403 ~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          403 MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             eEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            4578999999988876554    569999874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.80  E-value=6.8e-18  Score=156.55  Aligned_cols=235  Identities=10%  Similarity=0.071  Sum_probs=157.1

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .|..++|+|++ ++|++++. +.|.+|++......   ..                  .++..|...+..++|+|+|++|
T Consensus       110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~---~~------------------~~l~~~~~~~~~~~~SPDG~~l  166 (741)
T 2ecf_A          110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKA---AV------------------RQLTHGEGFATDAKLSPKGGFV  166 (741)
T ss_dssp             ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTT---SC------------------CBCCCSSSCEEEEEECTTSSEE
T ss_pred             CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcc---eE------------------EEcccCCcccccccCCCCCCEE
Confidence            47899999986 57777776 89999998654100   00                  0233466778999999999999


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCcc----------------ceEEEEEcCCCCCCEEEEEeCCC-----------
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTE----------------WVSCVRFSPNTLQPTIVSASWDR-----------  149 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~~~~~~dg-----------  149 (303)
                      +.++. +.|.+||..+.....+..  .+..                .+.+++|+|++.  .+++++.|+           
T Consensus       167 a~~~~-~~i~~~d~~~g~~~~~~~--~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~--~l~~~~~d~~~~~~~~~~~~  241 (741)
T 2ecf_A          167 SFIRG-RNLWVIDLASGRQMQLTA--DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS--AIAYARIDESPVPVQKRYEV  241 (741)
T ss_dssp             EEEET-TEEEEEETTTTEEEECCC--CCCSSEEESCCCHHHHHHSCCCCSEEECTTSS--CEEEEEEECTTSCEEEEEEE
T ss_pred             EEEeC-CcEEEEecCCCCEEEecc--CCccceeccccceeeeeccccccceEECCCCC--EEEEEEEcCCCCceEecCCC
Confidence            98874 689999986543322221  1111                136789999973  466665554           


Q ss_pred             ----------------------cEEEEECCC-ceeEEEEc--CCCCCeeEEEECCCCCEEEEEeC-----CCeEEEEeCC
Q 048118          150 ----------------------TVKVWNLSN-CKLRATLA--GHTGYVNTVAVSPDGSLCASGGK-----DGVILLWDLA  199 (303)
Q Consensus       150 ----------------------~i~iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~  199 (303)
                                            .|++||+.+ ++......  .|...+..++| |+|+.|++++.     +..|.+||+.
T Consensus       242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence                                  788899988 76554332  36678899999 99999887653     5689999999


Q ss_pred             CCceEEEecC--CC---eEEEEEEcCCCeEEEEE-cCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccce
Q 048118          200 EGKRLYSLDA--GA---VIHALCFSPNRYWLCAA-TEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNI  272 (303)
Q Consensus       200 ~~~~~~~~~~--~~---~v~~~~~s~~~~~l~~~-~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (303)
                      +++....+..  ..   .+..++|+|++.+++++ .++.+.+|.++ .++ ...+.                    .+..
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~--------------------~~~~  379 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT--------------------HGNW  379 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC--------------------CSSS
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee--------------------ecce
Confidence            8876544422  11   34578999999866655 46666666543 222 22221                    1122


Q ss_pred             eEEEE-EEcCCCCEEE-EeecCC--eEEEEecc
Q 048118          273 YCTSL-NWSVDGSTLF-SGYTDG--VIRVWGIG  301 (303)
Q Consensus       273 ~~~~~-~~sp~~~~l~-~gs~Dg--~v~~w~~~  301 (303)
                      .+..+ .|+|+++.|+ +++.|+  .+++|++.
T Consensus       380 ~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          380 SVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            23455 5999998765 555566  89999874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.80  E-value=3.4e-18  Score=158.11  Aligned_cols=245  Identities=10%  Similarity=0.092  Sum_probs=158.0

Q ss_pred             cccccc---ceeeeecCCCCCcEEEEecCC---------CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee
Q 048118           11 MRAHTD---MVTAIATPIDNSDMIVTASRD---------KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV   78 (303)
Q Consensus        11 ~~~h~~---~v~~v~~~~~~~~~~~t~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   78 (303)
                      +.+|..   .|..++|+|++ ++|++++.+         +.+.+||+......      .+.               ...
T Consensus        53 ~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~---------------~~~  110 (723)
T 1xfd_A           53 IEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ------SLD---------------PPE  110 (723)
T ss_dssp             ECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCE------ECC---------------CTT
T ss_pred             eccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceE------ecc---------------CCc
Confidence            444543   38999999986 578888765         77889998654310      111               011


Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCcc------------------ceEEEEEcCCCCCC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTE------------------WVSCVRFSPNTLQP  140 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~~  140 (303)
                      +|...+..++|+|+|++|+.++. +.|.+|+..+.....+..  .+..                  .+.+++|+|++  .
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~--~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~  185 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS--TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--T  185 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC--CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--S
T ss_pred             cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec--CCCCCceECcccceeEEEEeccCcceEEECCCC--C
Confidence            34445778999999999998886 789999986543322221  1111                  23789999997  3


Q ss_pred             EEEEEeCCC----------------------------------cEEEEECCCceeEEEEcCC------CCCeeEEEECCC
Q 048118          141 TIVSASWDR----------------------------------TVKVWNLSNCKLRATLAGH------TGYVNTVAVSPD  180 (303)
Q Consensus       141 ~~~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~  180 (303)
                      .+++++.++                                  .|++||+.+++....+..+      ...+..++|+||
T Consensus       186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD  265 (723)
T 1xfd_A          186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (723)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence            566665432                                  7999999887755555543      567889999999


Q ss_pred             CCEEEEEeC----CCeEEEEeCCCCceEEEec--CCCeE----EEEEEcCCCeEEEE--E-cCC------cEEEEe-CCC
Q 048118          181 GSLCASGGK----DGVILLWDLAEGKRLYSLD--AGAVI----HALCFSPNRYWLCA--A-TEQ------SIKIWD-LES  240 (303)
Q Consensus       181 ~~~l~~~~~----d~~v~iwd~~~~~~~~~~~--~~~~v----~~~~~s~~~~~l~~--~-~~~------~i~iwd-~~~  240 (303)
                      |+++++.+.    +..|++||+.+++......  ....+    ..++|+|+|..++.  + .++      .|++|| ..+
T Consensus       266 g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~  345 (723)
T 1xfd_A          266 TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN  345 (723)
T ss_dssp             SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC
T ss_pred             CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC
Confidence            998876643    3589999999887654332  22222    36799999875543  2 355      577787 333


Q ss_pred             Cce--eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC---CeEEEEecc
Q 048118          241 KSI--VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD---GVIRVWGIG  301 (303)
Q Consensus       241 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D---g~v~~w~~~  301 (303)
                      ++.  ...+.                   .........++|+|||+.|+..+.+   +.+++|++.
T Consensus       346 ~~~~~~~~l~-------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          346 SSNDNIQSIT-------------------SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             SSSCCCCBSC-------------------CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             CCccceeEee-------------------cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            320  11111                   0011112236899999998765554   889999874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.80  E-value=6.8e-18  Score=155.71  Aligned_cols=249  Identities=14%  Similarity=0.125  Sum_probs=154.8

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccc-cceeeeeecCCCcceEEEEeCC-CCceecccCCEEEEEEeeCCCE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKT-YGVARRRLTGHSHFVQDVVLSS-DGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      +..+.|.  + +.+++++.|+ | +||...++.. ...    +. +.....  .+++ ++....+...|.+++|+|+ ..
T Consensus        28 ~~~~~w~--g-~~~~~~~~~~-i-~~d~~tg~~~~~~l----~~-~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd-~~   94 (706)
T 2z3z_A           28 VVGLQWM--G-DNYVFIEGDD-L-VFNKANGKSAQTTR----FS-AADLNA--LMPEGCKFQTTDAFPSFRTLDAGR-GL   94 (706)
T ss_dssp             CTTCEEE--T-TEEEEEETTE-E-EEEC-------CEE----EE-HHHHHT--TC-----------CCCEEEEETTT-TE
T ss_pred             CCCCcCc--C-CeEEEEeCCc-E-EEECCCCcEeeEEe----ec-hhHhhh--hccchhccccccccCceeEEECCC-Ce
Confidence            5566776  3 4577777788 8 9998765431 100    00 000000  0000 0001122356899999999 66


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-----ceeEEEEcCCCC
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-----CKLRATLAGHTG  170 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~  170 (303)
                      ++.+ .++.|++||+.+.......   .+...+.+++|+|++  ..+++ ..++.|++||+.+     ++.......+..
T Consensus        95 ~~~~-~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~SpdG--~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A           95 VVLF-TQGGLVGFDMLARKVTYLF---DTNEETASLDFSPVG--DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEE---CCTTCCTTCEECTTS--SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             EEEE-ECCEEEEEECCCCceEEcc---CCcccccCCcCCCCC--CEEEE-EECCeEEEEecCcccccCCCcEEeccCCCC
Confidence            5555 4599999998665433322   123446778999987  35666 4789999999987     765543333333


Q ss_pred             C--------------eeEEEECCCCCEEEEEe---------------------------------CCCeEEEEeCCCCce
Q 048118          171 Y--------------VNTVAVSPDGSLCASGG---------------------------------KDGVILLWDLAEGKR  203 (303)
Q Consensus       171 ~--------------i~~~~~~~~~~~l~~~~---------------------------------~d~~v~iwd~~~~~~  203 (303)
                      .              +.++.|+|||++|++++                                 .+..|++||+.+++.
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence            2              47899999999999887                                 457899999998875


Q ss_pred             EEEe---cCCCeEEEEEEcCCCeEEEE-EcCC-----cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeE
Q 048118          204 LYSL---DAGAVIHALCFSPNRYWLCA-ATEQ-----SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       204 ~~~~---~~~~~v~~~~~s~~~~~l~~-~~~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                      ....   .....+..++|+|++..++. +.++     .|++||+++++....+....      ...         ....+
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~------~~~---------~~~~~  312 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET------DKH---------YVEPL  312 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE------CSS---------CCCCC
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc------CCC---------eECcc
Confidence            4433   23467899999999976655 3443     89999998874333221100      000         00012


Q ss_pred             EEEEEcC--CCCEEEEeecCCeEEEEecc
Q 048118          275 TSLNWSV--DGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       275 ~~~~~sp--~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..+.|+|  +|++|++++.||.+++|.+.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            3478999  99999999999999999764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.80  E-value=4.5e-17  Score=156.47  Aligned_cols=235  Identities=10%  Similarity=0.023  Sum_probs=169.6

Q ss_pred             cccccc-ceeeeecCCCCCcEEEEecCCCcEE-EEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           11 MRAHTD-MVTAIATPIDNSDMIVTASRDKSII-VWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        11 ~~~h~~-~v~~v~~~~~~~~~~~t~s~d~~i~-iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      +..|.. .+..++|+ + ++.|+.++.+..+. +|+......      .                  .+.+|...+..++
T Consensus       332 ~~~~~~~~~~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~~------~------------------~l~~~~~~~~~~~  385 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-T-KVAFIHGTREGDFLGIYDYRTGKA------E------------------KFEENLGNVFAMG  385 (1045)
T ss_dssp             CSCCSCEEEEEECSS-S-EEEEEEEETTEEEEEEEETTTCCE------E------------------ECCCCCCSEEEEE
T ss_pred             ccCCCcceEEeeeEc-C-CCeEEEEECCCceEEEEECCCCCc------e------------------EecCCccceeeeE
Confidence            455666 78899999 5 46788888887787 888753211      0                  1224667889999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC----------CcEEEEECCC
Q 048118           89 FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD----------RTVKVWNLSN  158 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d----------g~i~iwd~~~  158 (303)
                      |+|+|++|++++.++.|++||+.+.....+.  ..+...+.+++|+|++  ..+++++.+          +.|++||+.+
T Consensus       386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~--~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIE--RSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             ECCCCCEEEEECCCCeEEEEECCCCceEEec--cCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEEECCC
Confidence            9999999999999999999998654333222  2356667889999987  356666554          4899999988


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce-----------------------------------
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR-----------------------------------  203 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-----------------------------------  203 (303)
                      ++ ...+..|...+..++|+|+|+.|++++.++...+|+......                                   
T Consensus       462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (1045)
T 1k32_A          462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  540 (1045)
T ss_dssp             TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence            77 566777888889999999999999999887777776432211                                   


Q ss_pred             --------EEEec-CCCeEEEEEEcCCCeEEEE------------E--cCCcEEEEeCCCCceeeeeeeccccccccccC
Q 048118          204 --------LYSLD-AGAVIHALCFSPNRYWLCA------------A--TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEA  260 (303)
Q Consensus       204 --------~~~~~-~~~~v~~~~~s~~~~~l~~------------~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (303)
                              +..+. ....+..++++|++.+++.            +  ....|++||+++++... +.            
T Consensus       541 d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~------------  607 (1045)
T 1k32_A          541 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK------------  607 (1045)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE------------
T ss_pred             cccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee------------
Confidence                    11111 1245788999999976664            1  24478999998776421 11            


Q ss_pred             ccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          261 TTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                 ..+.+++|||||++|++++.| .+++||+.
T Consensus       608 -----------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          608 -----------NNLTDLRLSADRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             -----------EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred             -----------cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence                       124568899999999999877 89999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=7.6e-17  Score=136.01  Aligned_cols=207  Identities=16%  Similarity=0.199  Sum_probs=131.7

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeC---CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCCcEEEEE
Q 048118           80 HTKDVLSVAFSIDNRQIVSASR---DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDRTVKVWN  155 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i~iwd  155 (303)
                      +...+..++|+|+|+ +++++.   ++.|.+|++.......+.....+...+..++|+|++  ..+++++ .++.|.+|+
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg--~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR--QLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT--TEEEEEETTTTEEEEEE
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC--CEEEEEeCCCCEEEEEE
Confidence            345566799999999 555544   689999998543322222111233456789999987  3456555 789999999


Q ss_pred             CCC-ce--eEEEEcC---------CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CCceE--E--EecCCCeEEEEEE
Q 048118          156 LSN-CK--LRATLAG---------HTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EGKRL--Y--SLDAGAVIHALCF  218 (303)
Q Consensus       156 ~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~--~--~~~~~~~v~~~~~  218 (303)
                      +.. +.  ....+..         +...+.+++|+|+|+++++...++.|.+|++. +++..  .  ..........++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            952 22  2233321         11247889999999966666678999999998 44322  1  1223446778999


Q ss_pred             cCCCeEEEEE--cCCcEEEEeCCC--CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE-EEeecCC
Q 048118          219 SPNRYWLCAA--TEQSIKIWDLES--KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL-FSGYTDG  293 (303)
Q Consensus       219 s~~~~~l~~~--~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~gs~Dg  293 (303)
                      +|++.+++++  .++.|.+|+++.  +++............            ......+..++|+|+|++| +++..++
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD------------YTAHNGAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT------------CCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC------------CCCCCcceeEEECCCCCEEEEEeCCCC
Confidence            9999755443  467899999864  433211111000000            0011345779999999977 4556699


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      .|.+|++.
T Consensus       263 ~v~v~~~~  270 (347)
T 3hfq_A          263 TLAVFAVT  270 (347)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=7.4e-17  Score=137.27  Aligned_cols=243  Identities=10%  Similarity=0.052  Sum_probs=152.1

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..+..++++|++ ++|++++.+ .|.+|++....+.    .....          .      ..+ +.+..++|+|+|++
T Consensus        40 ~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~----~~~~~----------~------~~~-g~~~~~~~spdg~~   96 (365)
T 1jof_A           40 EPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEI----VHEAS----------H------PIG-GHPRANDADTNTRA   96 (365)
T ss_dssp             CCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEE----EEEEE----------E------ECC-SSGGGGCTTSCCEE
T ss_pred             CCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCE----EEeeE----------e------ecC-CCCccEEECCCCCE
Confidence            357788999875 578888887 9999998621111    00000          0      000 11334778899884


Q ss_pred             --EEEEe-------------CCCcEEEEecCC--ceeeeeecC-CCCccceEEEEEcCCCCCCEEEEEe-CCCcEEEEEC
Q 048118           96 --IVSAS-------------RDRTIKLWNTLG--ECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSAS-WDRTVKVWNL  156 (303)
Q Consensus        96 --l~t~~-------------~d~~i~vw~~~~--~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i~iwd~  156 (303)
                        ++++.             .++.+.+|++..  .....+... ..+...+.+++|+|++.  .++++. .++.|++||+
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A           97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEE
Confidence              44543             689999999853  221112110 11234578999999873  455544 4689999999


Q ss_pred             C-CceeE--EEEc--CCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCC--CCceE---E---EecCC----C-------
Q 048118          157 S-NCKLR--ATLA--GHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLA--EGKRL---Y---SLDAG----A-------  211 (303)
Q Consensus       157 ~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~--~~~~~---~---~~~~~----~-------  211 (303)
                      . +++..  ..+.  .|...+..++|+|+|+++++++. +++|.+|++.  +++..   .   .+...    .       
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            8 66543  2333  23456889999999999887765 7899999765  45432   1   12211    2       


Q ss_pred             eEEEEE-EcCCCeEEEEEc--CC-----cEEEEeCC-CCceeeeee-eccccccccccCccceeeccccceeEEEEEEcC
Q 048118          212 VIHALC-FSPNRYWLCAAT--EQ-----SIKIWDLE-SKSIVEDLK-VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV  281 (303)
Q Consensus       212 ~v~~~~-~s~~~~~l~~~~--~~-----~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  281 (303)
                      .+..++ |+|++.+|+++.  .+     .|.+|+++ ++++..... ..                  ........++|+|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~------------------~~~~~~~~~a~sp  316 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP------------------TPTSGGHSNAVSP  316 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE------------------CSSCCTTCCCEEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee------------------cCCCCcccceecC
Confidence            588899 999997665443  23     79999986 454332111 00                  0000113477899


Q ss_pred             ---CCCEEEEeecC-CeEEEEecc
Q 048118          282 ---DGSTLFSGYTD-GVIRVWGIG  301 (303)
Q Consensus       282 ---~~~~l~~gs~D-g~v~~w~~~  301 (303)
                         +|++|++++.+ +.|.+|+++
T Consensus       317 ~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          317 CPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCcCCCEEEEEEcCCCeEEEEEEc
Confidence               89999998875 999999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=3.6e-15  Score=122.30  Aligned_cols=248  Identities=15%  Similarity=0.201  Sum_probs=167.0

Q ss_pred             cccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF   89 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~   89 (303)
                      .-.+|-..+.++++++++ +++++.+.++.|.+|+... ..     ...+.            ..+.-.+|...+..+++
T Consensus        24 ~~~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g-~~-----~~~~~------------~~~~~~~~~~~p~~i~~   84 (286)
T 1q7f_A           24 VMEGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RF-----KFQFG------------ECGKRDSQLLYPNRVAV   84 (286)
T ss_dssp             SSTTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTS-CE-----EEEEC------------CBSSSTTCBSSEEEEEE
T ss_pred             CCCCccCCCceEEECCCC-CEEEEECCCCEEEEECCCC-cE-----EEEec------------ccCCCcccccCceEEEE
Confidence            345566778899999875 6888888899999998642 11     11110            00111234456888999


Q ss_pred             e-eCCCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc-
Q 048118           90 S-IDNRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-  166 (303)
Q Consensus        90 ~-~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-  166 (303)
                      . +++.++++... ++.|.+|+..+.....+.  ..+...+.+++++|++  ..+++...++.|.+||.. ++....+. 
T Consensus        85 ~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~--~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~  159 (286)
T 1q7f_A           85 VRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG--ATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGC  159 (286)
T ss_dssp             ETTTTEEEEEECGGGCEEEEECTTSCEEEEEC--TTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             EcCCCeEEEEcCCCCCEEEEECCCCcEEEEec--CccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCC
Confidence            5 66766666543 789999996554332221  1233457889999976  356666678899999964 44444443 


Q ss_pred             -CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC---CeEEEEEEcCCCeEEEEEc-CC-cEEEEeCCC
Q 048118          167 -GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG---AVIHALCFSPNRYWLCAAT-EQ-SIKIWDLES  240 (303)
Q Consensus       167 -~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~-~~-~i~iwd~~~  240 (303)
                       .+...+..++++|+++++++.+.++.|++||.. ++.+..+...   ..+..+++++++.++++.. ++ .|.+||.. 
T Consensus       160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-  237 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-  237 (286)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-
T ss_pred             CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-
Confidence             344568999999999988887889999999974 5555555432   4678999999987766654 44 89999964 


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ++.+..+...                  .....+.+++++|+|.++++ +.|++|++|++..
T Consensus       238 g~~~~~~~~~------------------~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          238 GQLISALESK------------------VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             SCEEEEEEES------------------SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCEEEEEccc------------------CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            4444433221                  01113467899999986666 6799999998753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=2.2e-16  Score=132.02  Aligned_cols=206  Identities=12%  Similarity=0.141  Sum_probs=144.7

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .+..++++|++..++++++.++.|.+||+...+..     ..+.          ....+   .|...+..++|+|+++++
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-----~~~~----------~~~~~---~~~~~~~~~~~s~dg~~l   96 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL-----GRID----------LSTPE---ERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-----EEEE----------CCBTT---EEEECTTCEEECTTSSEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE-----eeEE----------cCCcc---cccccccceEECCCCCEE
Confidence            47889999987666788888999999998654321     1110          00000   012245678999999988


Q ss_pred             EEEe------------CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           97 VSAS------------RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        97 ~t~~------------~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      ++++            .++.|.+||............   ...+.+++|+|++.  .++++  ++.|.+||+.+++....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~--~l~~~--~~~i~~~d~~~~~~~~~  169 (337)
T 1pby_B           97 AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGS--KLYGL--GRDLHVMDPEAGTLVED  169 (337)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSS--CEEEE--SSSEEEEETTTTEEEEE
T ss_pred             EEEecccccccccccccCceEEEEECCCCcEEEEEeC---CCCcceeEECCCCC--EEEEe--CCeEEEEECCCCcEeee
Confidence            8886            579999999865432222111   22356788999863  34444  68899999887765544


Q ss_pred             EcCCC------------------------------------------------------------------CCeeEEEEC
Q 048118          165 LAGHT------------------------------------------------------------------GYVNTVAVS  178 (303)
Q Consensus       165 ~~~~~------------------------------------------------------------------~~i~~~~~~  178 (303)
                      +..+.                                                                  ..+..++|+
T Consensus       170 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s  249 (337)
T 1pby_B          170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN  249 (337)
T ss_dssp             ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             eeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC
Confidence            33211                                                                  124468999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeee
Q 048118          179 PDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       179 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      |++++++++  ++.|.+||+.+++.+..+.....+.+++|+|++..+ +++.++.|.+||+++++.+..++.
T Consensus       250 ~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          250 PAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            999998888  799999999999888777766678899999998655 445678999999999988876654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=7.4e-16  Score=130.68  Aligned_cols=204  Identities=10%  Similarity=0.118  Sum_probs=129.0

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCC----CcEEEEecCCc--eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRD----RTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d----~~i~vw~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      +...+..++|+|++++|++++.+    +.|.+|++...  ....+.....+......+++  ++ ...+++...++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEE
Confidence            34556679999999999998886    79999987432  22122111112334556666  33 223444446889999


Q ss_pred             EECCCceeE----EE--EcC--------CCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCce--------------E
Q 048118          154 WNLSNCKLR----AT--LAG--------HTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKR--------------L  204 (303)
Q Consensus       154 wd~~~~~~~----~~--~~~--------~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~--------------~  204 (303)
                      |++......    ..  ..+        +...+.+++|+|+|+++++++ .++.|.+|++.....              .
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            998643211    11  111        122357899999999776555 588999998864331              2


Q ss_pred             EEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118          205 YSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD  282 (303)
Q Consensus       205 ~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  282 (303)
                      ...........++|+|++.+++++  .++.|.+||++++++........               ...+......++|+||
T Consensus       205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~---------------~~~~~~~~~~i~~spd  269 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA---------------DTVNAQGSGDIHLSPD  269 (361)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES---------------CSSCCCCEEEEEECTT
T ss_pred             eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec---------------CCCCCCCcccEEECCC
Confidence            233445667889999999765444  37899999998665422111110               0111122367899999


Q ss_pred             CCEEEEeec--CCeEEEEecc
Q 048118          283 GSTLFSGYT--DGVIRVWGIG  301 (303)
Q Consensus       283 ~~~l~~gs~--Dg~v~~w~~~  301 (303)
                      |++|++++.  ++.|.+|++.
T Consensus       270 g~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          270 GKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             SSEEEEEECSSSCEEEEEEEC
T ss_pred             CCEEEEECCCCCCEEEEEEEc
Confidence            998876665  4899999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=3.1e-17  Score=151.65  Aligned_cols=194  Identities=11%  Similarity=0.081  Sum_probs=130.9

Q ss_pred             eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC---CEEEEEEeeCCCE
Q 048118           19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK---DVLSVAFSIDNRQ   95 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~---~i~~i~~~~~~~~   95 (303)
                      ..+.|+|++ .+ +..+.|++|++|+.......     ..+                  .+|..   .+.+++|+|+|++
T Consensus        19 ~~~~~s~dg-~~-~~~~~d~~i~~~~~~~g~~~-----~~~------------------~~~~~~~~~~~~~~~SpDg~~   73 (719)
T 1z68_A           19 FFPNWISGQ-EY-LHQSADNNIVLYNIETGQSY-----TIL------------------SNRTMKSVNASNYGLSPDRQF   73 (719)
T ss_dssp             CCCEESSSS-EE-EEECTTSCEEEEESSSCCEE-----EEE------------------CHHHHHTTTCSEEEECTTSSE
T ss_pred             CccEECCCC-eE-EEEcCCCCEEEEEcCCCcEE-----EEE------------------ccccccccceeeEEECCCCCe
Confidence            367899876 44 44556999999998654321     111                  11211   3778999999999


Q ss_pred             EEEEeC---------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-
Q 048118           96 IVSASR---------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-  165 (303)
Q Consensus        96 l~t~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-  165 (303)
                      |++++.         ++.|++||+.+........   -...+..++|+|++.  .++.+ .++.|++||+.+++..... 
T Consensus        74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---l~~~~~~~~~SPDG~--~la~~-~~~~i~~~~~~~g~~~~l~~  147 (719)
T 1z68_A           74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---LPRPIQYLCWSPVGS--KLAYV-YQNNIYLKQRPGDPPFQITF  147 (719)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CCSSBCCEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCC
T ss_pred             EEEEecCceeEEeecceEEEEEECCCCcccccee---cCcccccceECCCCC--EEEEE-ECCeEEEEeCCCCCcEEEec
Confidence            998876         7899999986654310011   123477899999974  45555 4789999999877654322 


Q ss_pred             cCCCCCe-----------------eEEEECCCCCEEEEEeCCC----------------------------------eEE
Q 048118          166 AGHTGYV-----------------NTVAVSPDGSLCASGGKDG----------------------------------VIL  194 (303)
Q Consensus       166 ~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~----------------------------------~v~  194 (303)
                      .++...+                 .+++|||||+.|++++.|.                                  .|+
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~  227 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF  227 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence            2222222                 4899999999999987652                                  788


Q ss_pred             EEeCCCCceE--EEe-------cCCCeEEEEEEcCCCeEEEEEcC-----CcEEEEe----CCCCce
Q 048118          195 LWDLAEGKRL--YSL-------DAGAVIHALCFSPNRYWLCAATE-----QSIKIWD----LESKSI  243 (303)
Q Consensus       195 iwd~~~~~~~--~~~-------~~~~~v~~~~~s~~~~~l~~~~~-----~~i~iwd----~~~~~~  243 (303)
                      +||+.+++..  ..+       .....+..++|+||+.+++...+     ..|++||    .++++.
T Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence            9999887642  111       13456889999999887765432     2489999    766654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=7.9e-15  Score=122.94  Aligned_cols=242  Identities=13%  Similarity=0.154  Sum_probs=166.6

Q ss_pred             cceeeeecCCCCCcEEEEecCCC------------------------cEEEEEcccCccccceeeeeecCCCcceEEEEe
Q 048118           16 DMVTAIATPIDNSDMIVTASRDK------------------------SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL   71 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~   71 (303)
                      ..+.+|+++|++ +++++.+.++                        +|.+||......     ....            
T Consensus        24 ~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~------------   85 (329)
T 3fvz_A           24 GQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-----LQSS------------   85 (329)
T ss_dssp             SCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-----EEEE------------
T ss_pred             CCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-----Eecc------------
Confidence            468899999875 6888887774                        466665432211     0000            


Q ss_pred             CCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCc--eeeeeec------CCCCccceEEEEEcC-CCCCCEE
Q 048118           72 SSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGE--CKYTIQE------GDAHTEWVSCVRFSP-NTLQPTI  142 (303)
Q Consensus        72 ~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~------~~~~~~~i~~~~~~~-~~~~~~~  142 (303)
                           -.++-..+..++++++|.++++...++.|++|+..+.  ....+..      ...+......++++| ++  ..+
T Consensus        86 -----~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~ly  158 (329)
T 3fvz_A           86 -----GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVF  158 (329)
T ss_dssp             -----CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEE
T ss_pred             -----CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEE
Confidence                 0123346889999999998888888999999998654  2222210      012334578999999 44  355


Q ss_pred             EEEe-CCCcEEEEECCCceeEEEEcC----------CCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCceEEEec--
Q 048118          143 VSAS-WDRTVKVWNLSNCKLRATLAG----------HTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKRLYSLD--  208 (303)
Q Consensus       143 ~~~~-~dg~i~iwd~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~--  208 (303)
                      ++.+ .++.|++||. +++....+..          +......++++|+ ++++++...+++|++||..+++.+..+.  
T Consensus       159 v~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          159 VSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            6655 5899999994 5665555532          2234789999998 6777777789999999998888887763  


Q ss_pred             -CCCeEEEEEEcCCCeEEEEE--------cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE
Q 048118          209 -AGAVIHALCFSPNRYWLCAA--------TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW  279 (303)
Q Consensus       209 -~~~~v~~~~~s~~~~~l~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (303)
                       ....+..++|+| +..+...        .+..|++||..+++++..+...                 ..+...+..+++
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-----------------~~~~~~p~~ia~  299 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-----------------RKHFDMPHDIVA  299 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-----------------SSCCSSEEEEEE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-----------------CCccCCeeEEEE
Confidence             245688999999 5444332        2347999999988876544210                 112234578999


Q ss_pred             cCCCCEEEEeecCCeEEEEecc
Q 048118          280 SVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       280 sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +|+|.++++...+++|++|++.
T Consensus       300 ~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          300 SEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CTTSEEEEEESSSCCEEEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEeCC
Confidence            9999888888999999999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=3.1e-16  Score=131.91  Aligned_cols=208  Identities=14%  Similarity=0.106  Sum_probs=141.9

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .+..++++|++..++++++.++.|.+||+...+..     ..+.          ......  .+...+..++|+|+|+++
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~-----~~~~----------~~~~~~--~~~~~~~~~~~spdg~~l  106 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-----FHAN----------LSSVPG--EVGRSMYSFAISPDGKEV  106 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEE----------SCCSTT--EEEECSSCEEECTTSSEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE-----EEEE----------cccccc--cccccccceEECCCCCEE
Confidence            46788899887556677778999999998643221     1110          000000  001235678999999999


Q ss_pred             EEEeCC------------CcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           97 VSASRD------------RTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        97 ~t~~~d------------~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      ++++.+            +.|.+||+...... ...... +...+.+++|+|++.   ++.++  +.|.+||..+++...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~---l~~~~--~~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          107 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS---LYVAG--PDIYKMDVKTGKYTV  180 (349)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC---EEEES--SSEEEECTTTCCEEE
T ss_pred             EEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc---EEEcc--CcEEEEeCCCCceec
Confidence            988865            89999997542111 111111 222477889999873   33343  349999998877665


Q ss_pred             EEcCCC--------------------------------------------------------------------CCeeEE
Q 048118          164 TLAGHT--------------------------------------------------------------------GYVNTV  175 (303)
Q Consensus       164 ~~~~~~--------------------------------------------------------------------~~i~~~  175 (303)
                      .+..+.                                                                    ..+..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (349)
T 1jmx_B          181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG  260 (349)
T ss_dssp             EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceee
Confidence            554321                                                                    134567


Q ss_pred             EECC-CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          176 AVSP-DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       176 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      +++| ++++++++  ++.|.+||+.+++.+..+.....+..++|+|++. +++++.++.|.+||+++++.+..++.
T Consensus       261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          261 LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            7889 99998888  8899999999998887776666677899999975 44455678999999999988776654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=1.1e-15  Score=138.00  Aligned_cols=228  Identities=12%  Similarity=0.061  Sum_probs=150.6

Q ss_pred             cccc-cceeeeecCCCCCcEEEEecC---CCcEEEEEccc--CccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118           12 RAHT-DMVTAIATPIDNSDMIVTASR---DKSIIVWHLTK--EEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus        12 ~~h~-~~v~~v~~~~~~~~~~~t~s~---d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ..|. ..+..++|+|+  .++++++.   +...++|.+..  .....     .+.                   ....+.
T Consensus        60 t~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-----~l~-------------------~~~~~~  113 (582)
T 3o4h_A           60 NREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-----RLE-------------------AVKPMR  113 (582)
T ss_dssp             CSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-----ECT-------------------TSCSBE
T ss_pred             ecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-----ccc-------------------CCCCce
Confidence            3444 57899999986  57777765   56678877653  22110     000                   011223


Q ss_pred             EEEEeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC----CcEEEEECCCce
Q 048118           86 SVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD----RTVKVWNLSNCK  160 (303)
Q Consensus        86 ~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d----g~i~iwd~~~~~  160 (303)
                      ..+|+|+++. +++.+.++.+.+||+.+.....+...   ..  .+++|+|++  ..+++++.+    +.|++||+.+++
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~---~~--~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~  186 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL---PG--FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGG  186 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE---SS--CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCC
T ss_pred             eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC---CC--ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCC
Confidence            5578888753 33334444556999865433333221   11  678899987  367766665    779999998877


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEeCCC--eEEEEeCCCCceEEEec-CCCeEEEEE--------EcCCCeEEEE-E
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDG--VILLWDLAEGKRLYSLD-AGAVIHALC--------FSPNRYWLCA-A  228 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~-~~~~v~~~~--------~s~~~~~l~~-~  228 (303)
                      .. .+..|...+..++|+|||+.|+++..++  +|++||+.+++.. .+. ....+..++        |+|++.++++ .
T Consensus       187 ~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  264 (582)
T 3o4h_A          187 LR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  264 (582)
T ss_dssp             CE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             ce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE
Confidence            65 5677888899999999999999888888  9999999988766 332 222333344        9999965554 4


Q ss_pred             cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCe---EEEEec
Q 048118          229 TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV---IRVWGI  300 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~---v~~w~~  300 (303)
                      .++.+++|++  ++.....                       ...+.+++|+ +++++++++.+..   +.+|+.
T Consensus       265 ~~g~~~l~~~--g~~~~~~-----------------------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          265 REGRSAVFID--GERVEAP-----------------------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             ETTEEEEEET--TEEECCC-----------------------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             cCCcEEEEEE--CCeeccC-----------------------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence            6899999999  4432200                       0134578899 9999998888854   566654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=1.7e-15  Score=140.57  Aligned_cols=199  Identities=11%  Similarity=0.119  Sum_probs=131.9

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      ....+.|+|++ .+++++  |++|++|++..+..     ...+.++..             ..+......++|+|+|+++
T Consensus        18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~-----~~~~~~~~~-------------~~~~~~~~~~~~Spdg~~l   76 (740)
T 4a5s_A           18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNS-----SVFLENSTF-------------DEFGHSINDYSISPDGQFI   76 (740)
T ss_dssp             CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCE-----EEEECTTTT-------------TTCCSCCCEEEECTTSSEE
T ss_pred             cccccEECCCC-cEEEEc--CCcEEEEECCCCce-----EEEEechhh-------------hhhcccccceEECCCCCEE
Confidence            35688999875 677775  99999999875432     111222211             1122233457899999999


Q ss_pred             EEEeCC---------CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-Ec
Q 048118           97 VSASRD---------RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LA  166 (303)
Q Consensus        97 ~t~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~  166 (303)
                      +.++.+         +.+.+||+.+.....+   ..+...+...+|+|++.  .++.+ .++.|++|++.+++.... ..
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l---~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~lt~~  150 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLNKRQLITE---ERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWT  150 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCS---SCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSC
T ss_pred             EEEECCeeeEEEccceEEEEEECCCCcEEEc---ccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEEcCC
Confidence            988876         4556999876543322   23455688999999984  35554 578999999987764431 22


Q ss_pred             CCCCCe-----------------eEEEECCCCCEEEEEeCCC------------------------------------eE
Q 048118          167 GHTGYV-----------------NTVAVSPDGSLCASGGKDG------------------------------------VI  193 (303)
Q Consensus       167 ~~~~~i-----------------~~~~~~~~~~~l~~~~~d~------------------------------------~v  193 (303)
                      ++...+                 ..+.|||||+.|+.++.|.                                    +|
T Consensus       151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l  230 (740)
T 4a5s_A          151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF  230 (740)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence            222222                 3589999999998875322                                    58


Q ss_pred             EEEeCCC---Cc--eEEEec-------CCCeEEEEEEcCCCeEEEEEc-----CCcEEEEeCCCCc
Q 048118          194 LLWDLAE---GK--RLYSLD-------AGAVIHALCFSPNRYWLCAAT-----EQSIKIWDLESKS  242 (303)
Q Consensus       194 ~iwd~~~---~~--~~~~~~-------~~~~v~~~~~s~~~~~l~~~~-----~~~i~iwd~~~~~  242 (303)
                      ++||+.+   ++  ....+.       ....+..++|+||+.+++...     +..|++||+.+++
T Consensus       231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            8899988   63  222332       345688999999998665432     2369999998775

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=1.5e-14  Score=122.99  Aligned_cols=212  Identities=13%  Similarity=0.116  Sum_probs=131.3

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-------------CC
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-------------WD  148 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~d  148 (303)
                      .+..++|+|++++|++++.+ .|.+|++. ............. ....+++|+|++...+++++.             .+
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            56689999999999988888 89999974 2222111110001 113447788886211234442             68


Q ss_pred             CcEEEEECC-CceeEEEEc----CCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCC-CCceE--EEec---CCCeEEEE
Q 048118          149 RTVKVWNLS-NCKLRATLA----GHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLA-EGKRL--YSLD---AGAVIHAL  216 (303)
Q Consensus       149 g~i~iwd~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~-~~~~~--~~~~---~~~~v~~~  216 (303)
                      +.+.+|++. +++....+.    .+...+.+++|+|+|++++++.. ++.|++||+. +++..  ..+.   ....+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            999999996 455443333    24567899999999998877654 6899999998 66542  2332   25568899


Q ss_pred             EEcCCCeEEEEEc--CCcEEEEeCC--CCceeeee-eeccccccccccCccceeeccccceeEEEEE-EcCCCCEEEEee
Q 048118          217 CFSPNRYWLCAAT--EQSIKIWDLE--SKSIVEDL-KVDLKTEAEKSEATTATTTIKKKNIYCTSLN-WSVDGSTLFSGY  290 (303)
Q Consensus       217 ~~s~~~~~l~~~~--~~~i~iwd~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sp~~~~l~~gs  290 (303)
                      +|+|++.+++++.  ++.|.+|+++  ++++.... .+...+...... ..   ... ....+..++ |+|||++|++++
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~-~~---~~~-~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR-DP---ETG-KGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB-CT---TTS-SBSEEEEEEEECTTSSEEEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc-cc---ccc-cccccccEEEECCCCCEEEEEC
Confidence            9999997665543  5789999765  45432100 010000000000 00   000 011457899 999999888776


Q ss_pred             cCC------eEEEEecc
Q 048118          291 TDG------VIRVWGIG  301 (303)
Q Consensus       291 ~Dg------~v~~w~~~  301 (303)
                      .+.      .|.+|++.
T Consensus       274 ~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          274 RANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EESSTTSCCEEEEEEEC
T ss_pred             CCCCCCCCCeEEEEEEC
Confidence            433      89999974

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.69  E-value=3.4e-16  Score=144.67  Aligned_cols=233  Identities=12%  Similarity=0.132  Sum_probs=146.1

Q ss_pred             eeeeecCCCCCcEEEEecC---------CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           18 VTAIATPIDNSDMIVTASR---------DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      +..++|+|++ ++|++++.         |++|++||+...+...   ..                  +   ....+..++
T Consensus        62 ~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---~~------------------~---l~~~~~~~~  116 (719)
T 1z68_A           62 ASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---GN------------------E---LPRPIQYLC  116 (719)
T ss_dssp             CSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SS------------------C---CCSSBCCEE
T ss_pred             eeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCcccc---ce------------------e---cCcccccce
Confidence            8899999986 57888776         7899999986542100   00                  0   013466799


Q ss_pred             EeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccce-----------------EEEEEcCCCCCCEEEEEeCCC--
Q 048118           89 FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV-----------------SCVRFSPNTLQPTIVSASWDR--  149 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~~~~~~~~~dg--  149 (303)
                      |+|+|++|+.+. |+.|++|+..+.....+. ...+...+                 .+++|+|++  ..|++++.|.  
T Consensus       117 ~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG--~~la~~~~d~~~  192 (719)
T 1z68_A          117 WSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG--KFLAYAEFNDTD  192 (719)
T ss_dssp             ECSSTTCEEEEE-TTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS--SEEEEEEEECTT
T ss_pred             ECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCC--CEEEEEEECCCC
Confidence            999999999885 789999998543322221 11222212                 479999997  3577665442  


Q ss_pred             --------------------------------cEEEEECCCceeE--EE------EcCCCCCeeEEEECCCCCEEEEEeC
Q 048118          150 --------------------------------TVKVWNLSNCKLR--AT------LAGHTGYVNTVAVSPDGSLCASGGK  189 (303)
Q Consensus       150 --------------------------------~i~iwd~~~~~~~--~~------~~~~~~~i~~~~~~~~~~~l~~~~~  189 (303)
                                                      .|++||+.+++..  ..      +.+|...+..++|+||++++++...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~  272 (719)
T 1z68_A          193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK  272 (719)
T ss_dssp             SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred             CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence                                            7889999887642  11      2357778999999999877766443


Q ss_pred             C----CeEEEEe----CCCCceEEEe-----cCCCeEE-----EEEEcCCCeEEEE--E-cCC--cEEEEeCCCCceeee
Q 048118          190 D----GVILLWD----LAEGKRLYSL-----DAGAVIH-----ALCFSPNRYWLCA--A-TEQ--SIKIWDLESKSIVED  246 (303)
Q Consensus       190 d----~~v~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~s~~~~~l~~--~-~~~--~i~iwd~~~~~~~~~  246 (303)
                      .    ..|.+||    +.+++.....     .....+.     .+.|+|++..++.  + .++  .|++||+.+++.. .
T Consensus       273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~  351 (719)
T 1z68_A          273 RVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-Q  351 (719)
T ss_dssp             SSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-E
T ss_pred             cccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-e
Confidence            2    2588899    7766543322     1223343     6789999864432  3 333  5888887765421 1


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-----CCeEEEEecc
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-----DGVIRVWGIG  301 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-----Dg~v~~w~~~  301 (303)
                      +.                    .+...+..+.++ +++.|+..+.     ++..++|.+.
T Consensus       352 lt--------------------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          352 IT--------------------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             CS--------------------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             cc--------------------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            11                    111113345555 7776665554     4889999763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=1.7e-14  Score=123.21  Aligned_cols=247  Identities=11%  Similarity=0.039  Sum_probs=147.0

Q ss_pred             ccccccceee-----eecCCCCCcEEEEecC-CCc--EEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118           11 MRAHTDMVTA-----IATPIDNSDMIVTASR-DKS--IIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus        11 ~~~h~~~v~~-----v~~~~~~~~~~~t~s~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      +..|......     .+|+|++ ++|+.++. ++.  |.+|++...+.     ....                  .++..
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~-----~~lt------------------~~~~~   81 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVA-----TQLT------------------EGRGD   81 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEE-----EECC------------------CSSCB
T ss_pred             ecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCce-----EEee------------------eCCCC
Confidence            4455544554     7899986 46676666 775  66666643221     1111                  12233


Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEE--EcCCCCCCEEEE----------------
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVR--FSPNTLQPTIVS----------------  144 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~----------------  144 (303)
                      .+....|+|+++.|+.++.++.|.+||+.+.....+..  .+...+....  ++|++  ..++.                
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ--VPAEWVGYGTWVANSDC--TKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCCCSHHH
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee--chhhcccccceeECCCC--CeeccccccCcccccccccch
Confidence            33356799999999999999999999986543332222  1223333333  46765  23432                


Q ss_pred             ------EeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECC-CCCEEEEEeCC------CeEEEEeCCCCceEEEecCC-
Q 048118          145 ------ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKD------GVILLWDLAEGKRLYSLDAG-  210 (303)
Q Consensus       145 ------~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~-  210 (303)
                            ...+..|.+||+.+++... +..+...+..+.|+| +|+.|+..+.+      ..|.++|+..++........ 
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE  236 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred             hhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence                  1234679999998876543 334566789999999 99988877653      37888887665432222222 


Q ss_pred             -CeEEEEEEcCCCeEEEE-Ec-CC----cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          211 -AVIHALCFSPNRYWLCA-AT-EQ----SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       211 -~~v~~~~~s~~~~~l~~-~~-~~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                       ..+...+|+|++..|+. +. ++    .|++||+++++.........         .... ..     ......|+|||
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---------~~~~-~~-----~~~~~~~spdg  301 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA---------CSHL-MS-----NYDGSLMVGDG  301 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC---------EEEE-EE-----CTTSSEEEEEE
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC---------ceee-ee-----cCCCCeEccCC
Confidence             35778899999875543 32 12    39999999876432111100         0000 00     00113689999


Q ss_pred             CEEEEe---------ecCCeEEEEecc
Q 048118          284 STLFSG---------YTDGVIRVWGIG  301 (303)
Q Consensus       284 ~~l~~g---------s~Dg~v~~w~~~  301 (303)
                      +.|+..         ..+..|.+||+.
T Consensus       302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          302 SDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             CCC------------CCCCEEEEEETT
T ss_pred             CcceeEeeeccccccCCCCEEEEEecc
Confidence            987754         556789999874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=2.3e-14  Score=131.19  Aligned_cols=260  Identities=11%  Similarity=0.032  Sum_probs=156.8

Q ss_pred             cccccccceeeeecCCCCCcEEEEe--cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           10 TMRAHTDMVTAIATPIDNSDMIVTA--SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        10 ~~~~h~~~v~~v~~~~~~~~~~~t~--s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      .+.+|...+..++++++ .-++++.  +.++...||.......     ...+..+...+.       ..  .|.-.-...
T Consensus        18 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~-------~~--~~~~~~~~~   82 (662)
T 3azo_A           18 LVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGA-----EESALPAPWNVR-------NR--VFEYSGFPW   82 (662)
T ss_dssp             HHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSC-----EEESSCTTCCBC-------CC--GGGTCCCCE
T ss_pred             HHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCC-----cceeCCCCcccc-------cc--ccccCCccc
Confidence            46778889999999864 3456666  5688999998632211     111111110000       00  011101134


Q ss_pred             EEe--eCCCE-EEEEeC-CCcEEEEecC--C-ceeeeeecCC--CCccceEEEEEcCCCCCCEEEEEeCC----------
Q 048118           88 AFS--IDNRQ-IVSASR-DRTIKLWNTL--G-ECKYTIQEGD--AHTEWVSCVRFSPNTLQPTIVSASWD----------  148 (303)
Q Consensus        88 ~~~--~~~~~-l~t~~~-d~~i~vw~~~--~-~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~d----------  148 (303)
                      .|+  |+|++ |+.++. +..|.+++..  + .....+....  .+...+..++|+|++  ..+++++.+          
T Consensus        83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEE
T ss_pred             eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCce
Confidence            455  99988 765543 4566666664  2 2222221110  145567899999997  356666655          


Q ss_pred             CcEEEEECCC------ceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCC--------CeEEEEeCC-CCc--eEEEe-c-
Q 048118          149 RTVKVWNLSN------CKLRATLA-GHTGYVNTVAVSPDGSLCASGGKD--------GVILLWDLA-EGK--RLYSL-D-  208 (303)
Q Consensus       149 g~i~iwd~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~-~~~--~~~~~-~-  208 (303)
                      ..|++||+.+      ++.. .+. .+...+..++|||||++|+.++.+        ..|.+||+. +++  ....+ . 
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            5799999987      5543 444 555678889999999999887755        379999998 461  22232 2 


Q ss_pred             CCCeEEEEEEcCCCeEEEEEc-CC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE
Q 048118          209 AGAVIHALCFSPNRYWLCAAT-EQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST  285 (303)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~~-~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  285 (303)
                      ....+..++|+|++.+++.+. ++  .|++||+.+++.........       ....+...     ..+..++|+|++.+
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-------~~~~p~w~-----~~~~~~~~~~~~~~  307 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREE-------EFAGPLWT-----PGMRWFAPLANGLI  307 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS-------BSSCCCCS-----TTCCSEEECTTSCE
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccc-------cccCcccc-----ccCceEeEeCCCEE
Confidence            246788999999998665554 45  68888876665432211100       00000000     00234788999999


Q ss_pred             EEEeecCCeEEEEec
Q 048118          286 LFSGYTDGVIRVWGI  300 (303)
Q Consensus       286 l~~gs~Dg~v~~w~~  300 (303)
                      +++++. |.+++|.+
T Consensus       308 ~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          308 AVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EEEEBS-SSCEEEEE
T ss_pred             EEEEEc-CccEEEEE
Confidence            999998 99999944

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=1.6e-13  Score=113.06  Aligned_cols=235  Identities=12%  Similarity=0.081  Sum_probs=153.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +..+.....++.|+|++..+++++..++.|..|+.... .      .                  .+..+...+.+++++
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------~------------------~~~~~~~~~~~l~~~   77 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------S------------------PEMHPSHHQNGHCLN   77 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------E------------------EEESSCSSEEEEEEC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------E------------------EEECCCCCcceeeEC
Confidence            33444567789999876558888999999999987532 1      1                  112344568899999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeee-c-CCCCccceEEEEEcCCCCCCEEEE----Ee-------------CCCcE
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQ-E-GDAHTEWVSCVRFSPNTLQPTIVS----AS-------------WDRTV  151 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~----~~-------------~dg~i  151 (303)
                      ++|.++++...++.|.+|+.......... . .......+..++++|++  ..+++    |+             ..+.|
T Consensus        78 ~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G--~l~vtd~~~g~~~~~~~~~~~~~~~~~~l  155 (296)
T 3e5z_A           78 KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG--SLWFSDPTYGIDKPEEGYGGEMELPGRWV  155 (296)
T ss_dssp             TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS--CEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred             CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC--CEEEECCccccccccccccccccCCCcEE
Confidence            99998887777789999997432222111 1 11111235678899876  34554    22             13456


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-CCce---EEEec-CCCeEEEEEEcCCCeEEE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-EGKR---LYSLD-AGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~---~~~~~-~~~~v~~~~~s~~~~~l~  226 (303)
                      ..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+||+. .++.   ...+. ....+..++++++|.+.+
T Consensus       156 ~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          156 FRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             EEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred             EEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence            666654 443 3344555677899999999988777778999999986 4433   12221 223456789999998666


Q ss_pred             EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE-cCCCCEEEEeecCCeEEE
Q 048118          227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW-SVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~~~~l~~gs~Dg~v~~  297 (303)
                      +. ++.|.+||.+ ++.+..+...                    .. +.+++| +|+++.|.+++.++.+++
T Consensus       234 ~~-~~~v~~~~~~-g~~~~~~~~~--------------------~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          234 SA-GDGVHVLTPD-GDELGRVLTP--------------------QT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EE-TTEEEEECTT-SCEEEEEECS--------------------SC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             Ec-CCeEEEECCC-CCEEEEEECC--------------------CC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            66 8899999986 5554443321                    11 356778 689999998888765443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=2.1e-13  Score=124.86  Aligned_cols=159  Identities=17%  Similarity=0.176  Sum_probs=108.9

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCC----------CcEEEEecCC------ceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRD----------RTIKLWNTLG------ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d----------~~i~vw~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                      |...+..++|+|+|+.|+.++.|          ..|.+|++.+      .....+.  ..+...+..++|+|++  ..++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDG--~~la  203 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS--DDAHRFVTGPRLSPDG--RQAV  203 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS--CSCSSEECCCEECTTS--SEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE--ecCCCcccCceECCCC--CEEE
Confidence            45567889999999999988877          5789999866      3222221  0233456778999997  3566


Q ss_pred             EEeCC--------CcEEEEECC-Cc---eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC--eEEEEeCCCCceEEEecC
Q 048118          144 SASWD--------RTVKVWNLS-NC---KLRATLAGHTGYVNTVAVSPDGSLCASGGKDG--VILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       144 ~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~  209 (303)
                      ..+.+        ..|++||+. ++   +......++...+..+.|+|+|++++++..++  .|.+||+.+++.......
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~  283 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR  283 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence            55544        379999998 46   44444445567899999999999777777788  677777766654332221


Q ss_pred             CCe---------EEEEEEcCCCeEEEEEcCCcEEEE--eCCCCc
Q 048118          210 GAV---------IHALCFSPNRYWLCAATEQSIKIW--DLESKS  242 (303)
Q Consensus       210 ~~~---------v~~~~~s~~~~~l~~~~~~~i~iw--d~~~~~  242 (303)
                      ...         +..++|+|++.+++.+..+.+++|  |+.+++
T Consensus       284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  327 (662)
T 3azo_A          284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE  327 (662)
T ss_dssp             SSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE
T ss_pred             cccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc
Confidence            111         456889998877766544777777  665554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=7.9e-12  Score=104.53  Aligned_cols=241  Identities=11%  Similarity=0.083  Sum_probs=148.9

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +..+...+.+++|++++ ++++++..++.|.+|+.......     .           +       ...+...+.+++++
T Consensus        40 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~-----~-----------~-------~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK-----R-----------P-------FVSHKANPAAIKIH   95 (333)
T ss_dssp             EESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE-----E-----------E-------EECSSSSEEEEEEC
T ss_pred             EeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEE-----E-----------E-------eeCCCCCcceEEEC
Confidence            34455567788898765 57778888999999987543211     0           0       00234578899999


Q ss_pred             eCCCEEEEEeCC----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC------CCcEEEEECCCce
Q 048118           91 IDNRQIVSASRD----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW------DRTVKVWNLSNCK  160 (303)
Q Consensus        91 ~~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------dg~i~iwd~~~~~  160 (303)
                      +++.++++...+    +.|.+|+..+...............+..+.++|++  ..+++...      .+.|..+|..+++
T Consensus        96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~l~~~~~~~~~  173 (333)
T 2dg1_A           96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRT  173 (333)
T ss_dssp             TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred             CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC--CEEEEeccccccCCCceEEEEeCCCCE
Confidence            999888877666    68999997654322121111233468899999976  34444332      2456666665544


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCC-CceEE--------EecCCCeEEEEEEcCCCeEEEEE-c
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAE-GKRLY--------SLDAGAVIHALCFSPNRYWLCAA-T  229 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~-~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~-~  229 (303)
                      ... +......+..++|+|+++.| ++.+.++.|.+||+.+ +..+.        .+.....+..+++++++.+.++. .
T Consensus       174 ~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~  252 (333)
T 2dg1_A          174 VTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG  252 (333)
T ss_dssp             EEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred             EEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC
Confidence            433 22223457889999999865 4445688999999863 33221        11112467889999998755544 5


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                      ++.|.+||.+ ++.+..+......              .++...+.+++|+|+++.|.+++.++
T Consensus       253 ~~~v~~~d~~-g~~~~~~~~~~~~--------------~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          253 QGRVLVFNKR-GYPIGQILIPGRD--------------EGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             TTEEEEECTT-SCEEEEEECTTGG--------------GTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCEEEEECCC-CCEEEEEEcCCCc--------------cccccCcceEEECCCCCEEEEEeCcc
Confidence            6889999984 5544433221000              00111345688999988777666653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=1.8e-12  Score=105.75  Aligned_cols=217  Identities=14%  Similarity=0.097  Sum_probs=148.6

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceeccc-CCEEEEEEeeCCCEEEEEeCCCcEE
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHT-KDVLSVAFSIDNRQIVSASRDRTIK  106 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~l~t~~~d~~i~  106 (303)
                      +++|++++.|+.|.+||.++++...     .+                  ..+. ..+.++.+.|+|++++  +.++.|.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w-----~~------------------~~~~~~~~~~~~~~pdG~ilv--s~~~~V~   59 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVW-----EY------------------PLEKGWECNSVAATKAGEILF--SYSKGAK   59 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEE-----EE------------------ECCTTCCCCEEEECTTSCEEE--ECBSEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEE-----Ee------------------CCCccCCCcCeEECCCCCEEE--eCCCCEE
Confidence            3689999999999999986543221     11                  1122 3467888999999888  3467899


Q ss_pred             EEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CCcEEEEECCCceeEEEEc------CCCCCeeEEEECC
Q 048118          107 LWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DRTVKVWNLSNCKLRATLA------GHTGYVNTVAVSP  179 (303)
Q Consensus       107 vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~~~  179 (303)
                      .||..++..+....  .....+.++.+.|++  ..+++.+. ++.+..+|. +++.+.++.      .+......+...+
T Consensus        60 ~~d~~G~~~W~~~~--~~~~~~~~~~~~~dG--~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~  134 (276)
T 3no2_A           60 MITRDGRELWNIAA--PAGCEMQTARILPDG--NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK  134 (276)
T ss_dssp             EECTTSCEEEEEEC--CTTCEEEEEEECTTS--CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred             EECCCCCEEEEEcC--CCCccccccEECCCC--CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC
Confidence            99986655554432  122357788888886  46666665 777888886 566555443      1112445667899


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeeccccccccc
Q 048118          180 DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLKTEAEKS  258 (303)
Q Consensus       180 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (303)
                      +|+++++...+++|..||.. ++.+.++.......++...+++.+++++. ++.|..+|.++++++.++...-..     
T Consensus       135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~-----  208 (276)
T 3no2_A          135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE-----  208 (276)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB-----
T ss_pred             CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC-----
Confidence            99999999999999999988 99998887665666777888887766554 557999999999988776421000     


Q ss_pred             cCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          259 EATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      .         ....++..+...++|..+++.
T Consensus       209 ~---------~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          209 G---------VQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             S---------CCCSEEEEEEECTTSCEEEEE
T ss_pred             C---------ccccccccceEcCCCCEEEEe
Confidence            0         011234556666777766665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=2.5e-12  Score=104.15  Aligned_cols=236  Identities=6%  Similarity=-0.044  Sum_probs=155.2

Q ss_pred             ceeeeecCCCCCcEEE-EecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           17 MVTAIATPIDNSDMIV-TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~-t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ...++++++++ ++++ +.+.++.|..|+.......      ...                 ..+...+.++++++++.+
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~------~~~-----------------~~~~~~p~~i~~~~~g~l   80 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT------VLP-----------------FNGLYQPQGLAVDGAGTV   80 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----E------ECC-----------------CCSCCSCCCEEECTTCCE
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccc------eEe-----------------eCCcCCcceeEECCCCCE
Confidence            56788888765 5677 5577889999976432110      000                 012234667899999886


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV  175 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  175 (303)
                      +++.. ++.|.+|+..+.......  ......+..++++|++  ..+++...++.|.+|+..+.............+..+
T Consensus        81 ~v~~~-~~~i~~~d~~~~~~~~~~--~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           81 YVTDF-NNRVVTLAAGSNNQTVLP--FDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  155 (270)
T ss_dssp             EEEET-TTEEEEECTTCSCCEECC--CCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred             EEEcC-CCEEEEEeCCCceEeeee--cCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence            66655 889999997654322221  1122457889999875  356666667889999765544332222233467889


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeecccc
Q 048118          176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKT  253 (303)
Q Consensus       176 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~  253 (303)
                      +++|+++++++...++.|.+||............ ...+..+++++++.+.++. .++.|.+||........ ..     
T Consensus       156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----  229 (270)
T 1rwi_B          156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----  229 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----
T ss_pred             EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----
Confidence            9999999777777788999999877654433222 2567889999998655554 47789999986543211 00     


Q ss_pred             ccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          254 EAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                    ......+..++++|+|.++++...+++|+++++.
T Consensus       230 --------------~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          230 --------------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             --------------CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             --------------cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence                          0011235678999999988899999999999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=7.6e-12  Score=102.37  Aligned_cols=200  Identities=14%  Similarity=0.229  Sum_probs=139.1

Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC---CCCccceEEEEEc-CCCCCCEEEEEeC-CCcEE
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG---DAHTEWVSCVRFS-PNTLQPTIVSASW-DRTVK  152 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~~~~~~-dg~i~  152 (303)
                      .++-..+.++++++++.++++...++.|.+|+..+.....+...   ..+...+..+++. +++  ..+++... ++.|+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEE
Confidence            34556788999999999888888899999999765433322110   1233457889984 543  23444322 88999


Q ss_pred             EEECCCceeEEEEcC-CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEEEcCCCeEEEEE
Q 048118          153 VWNLSNCKLRATLAG-HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       153 iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~  228 (303)
                      +|| .+++....+.. +...+..++++|+++++++...++.|.+||.. ++.+..+.   ....+..++++|++.++++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 45665555543 34578899999999988887788999999964 55555553   23468899999998766654


Q ss_pred             -cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC-eEEEEec
Q 048118          229 -TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG-VIRVWGI  300 (303)
Q Consensus       229 -~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg-~v~~w~~  300 (303)
                       .++.|++||... +.+..+..                  .+....+..++++|+|.++++...++ .|.+|+.
T Consensus       182 ~~~~~i~~~~~~g-~~~~~~~~------------------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          182 NRAHCVKVFNYEG-QYLRQIGG------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             GGGTEEEEEETTC-CEEEEESC------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             CCCCEEEEEcCCC-CEEEEEcc------------------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence             478999999753 33332211                  00112346789999999888888886 9999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=1.9e-12  Score=108.26  Aligned_cols=241  Identities=9%  Similarity=0.026  Sum_probs=154.2

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..|.++.|++.. ..++..+.++.++.|.-..        ..                  .+..+...+.+++|++++.+
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~------------------~~~~~~~~~~~~~~~~~g~l   58 (333)
T 2dg1_A            6 QDLPTLFYSGKS-NSAVPIISESELQTITAEP--------WL------------------EISKKGLQLEGLNFDRQGQL   58 (333)
T ss_dssp             CCCCBCCSCGGG-GCSSCCCCGGGSCEEECEE--------EE------------------EEESSCCCEEEEEECTTSCE
T ss_pred             cccceeeecCCc-cceeEEeecccCcccccce--------eE------------------EEeccCccccCcEECCCCCE
Confidence            457778888764 4466667788888883210        11                  11234445678999999998


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC----CcEEEEECCCceeEEEEc--CCC
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD----RTVKVWNLSNCKLRATLA--GHT  169 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d----g~i~iwd~~~~~~~~~~~--~~~  169 (303)
                      ++++..++.|.+|+..+........  .+...+.+++++|++  ..+++...+    +.|.+||..+++....+.  .+.
T Consensus        59 ~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg--~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           59 FLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDG--RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             EEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTS--CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             EEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCC--cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            8888889999999976543322221  234568899999986  345554444    589999988776543333  234


Q ss_pred             CCeeEEEECCCCCEEEEEeC------CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE-EE-EcCCcEEEEeCCC-
Q 048118          170 GYVNTVAVSPDGSLCASGGK------DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL-CA-ATEQSIKIWDLES-  240 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~-~~~~~i~iwd~~~-  240 (303)
                      ..+..++++|+|+++++...      .+.|..+|..+++.............++|+|++..+ ++ ..++.|++||+++ 
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~  214 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  214 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence            56889999999988776653      356777776654433222222347789999998644 33 3468999999863 


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +..+..+.....            ...... ..+..++++++|.++++...++.|.+||.
T Consensus       215 g~~~~~~~~~~~------------~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          215 GVTIQPFGATIP------------YYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             SSSEEEEEEEEE------------EECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CcCcccccceEE------------EecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            332221110000            000111 23466889999998888888899999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.58  E-value=2.7e-13  Score=115.77  Aligned_cols=192  Identities=13%  Similarity=0.126  Sum_probs=127.9

Q ss_pred             EEEeeCCCEEEEEeC-CCc--EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           87 VAFSIDNRQIVSASR-DRT--IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        87 i~~~~~~~~l~t~~~-d~~--i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      .+|+|+|++|+.++. ++.  |.+||..+.....+.  ..+...+..+.|+|++  ..++.++.++.|++||+.+++...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~spdg--~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT--EGRGDNTFGGFLSPDD--DALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC--CSSCBCSSSCEECTTS--SEEEEEETTTEEEEEETTTCCEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee--eCCCCCccceEEcCCC--CEEEEEeCCCeEEEEECCCCccee
Confidence            689999999988887 664  777787654333222  2233333456799987  468888888999999999888766


Q ss_pred             EEcCCCCCeeEE--EECCCCCEEEEE----------------------eCCCeEEEEeCCCCceEEEecCCCeEEEEEEc
Q 048118          164 TLAGHTGYVNTV--AVSPDGSLCASG----------------------GKDGVILLWDLAEGKRLYSLDAGAVIHALCFS  219 (303)
Q Consensus       164 ~~~~~~~~i~~~--~~~~~~~~l~~~----------------------~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s  219 (303)
                      .+..+...+...  .++|++++++..                      ..+..|.+||+.+++..........+..++|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~s  196 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYR  196 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEEC
Confidence            665555544333  348999988742                      24478999999988765444445668899999


Q ss_pred             C-CCeEEEEEc-------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          220 P-NRYWLCAAT-------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       220 ~-~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      | ++..++...       ...|+++|..+++... +..                  ......+....|+|||+.|+..+.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~------------------~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKT------------------HAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCC------------------CCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eee------------------CCCCcccccceECCCCCEEEEEec
Confidence            9 987766543       2378888876543221 110                  000123456789999997765433


Q ss_pred             -CC----eEEEEecc
Q 048118          292 -DG----VIRVWGIG  301 (303)
Q Consensus       292 -Dg----~v~~w~~~  301 (303)
                       ++    .|.+||+.
T Consensus       258 ~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          258 LKGSPDRFIYSADPE  272 (388)
T ss_dssp             ETTCCCEEEEEECTT
T ss_pred             CCCCCcceEEEEecC
Confidence             22    39999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=2.3e-12  Score=118.93  Aligned_cols=241  Identities=9%  Similarity=0.076  Sum_probs=151.3

Q ss_pred             ccccceeeeecCCCCCcEEEEecCCC-----cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           13 AHTDMVTAIATPIDNSDMIVTASRDK-----SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~t~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +|...+..++|+|++. +||.++.++     +|++||+..++....    .                   ..+ ..+..+
T Consensus       122 ~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~----~-------------------~~~-~~~~~~  176 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPD----V-------------------LER-VKFSCM  176 (710)
T ss_dssp             TSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEE----E-------------------EEE-ECSCCE
T ss_pred             CCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcc----c-------------------ccC-cccceE
Confidence            3444678899999864 666554433     899999875432100    0                   001 124468


Q ss_pred             EEeeCCCEEEEEeCCCc----------------EEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeC--
Q 048118           88 AFSIDNRQIVSASRDRT----------------IKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--  147 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~----------------i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--  147 (303)
                      +|+|+|+.|+.++.++.                |.+|++.+...  ..+.....+...+..+.|+|++.  .++..+.  
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~  254 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREG  254 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEcc
Confidence            99999999998888766                99999854321  12222222345577899999873  4444433  


Q ss_pred             ---CCcEEEEECCC------ce-eEEEEcCCCCCeeEEEECCCCCEEEEEeCC----CeEEEEeCCCCce--EEEe-cCC
Q 048118          148 ---DRTVKVWNLSN------CK-LRATLAGHTGYVNTVAVSPDGSLCASGGKD----GVILLWDLAEGKR--LYSL-DAG  210 (303)
Q Consensus       148 ---dg~i~iwd~~~------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~--~~~~-~~~  210 (303)
                         +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+.+    +.|.+||+.++..  ...+ ...
T Consensus       255 ~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          255 CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence               56899999975      42 34556656655554 478888887666543    3699999987641  1222 222


Q ss_pred             --CeEEEEEEcCCCeEEEEE-cCC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE
Q 048118          211 --AVIHALCFSPNRYWLCAA-TEQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST  285 (303)
Q Consensus       211 --~~v~~~~~s~~~~~l~~~-~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  285 (303)
                        ..+..++|++++.+++.. .++  .|++||+.+++.+..+..                    ....+..++++|++..
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--------------------~~~~v~~~~~s~d~~~  393 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL--------------------EVGSVVGYSGQKKDTE  393 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC--------------------CSSEEEEEECCTTCSE
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC--------------------CCceEEEEecCCCCCE
Confidence              368889998777666554 455  577888866665443321                    1224566788999876


Q ss_pred             EEEe----ecCCeEEEEecc
Q 048118          286 LFSG----YTDGVIRVWGIG  301 (303)
Q Consensus       286 l~~g----s~Dg~v~~w~~~  301 (303)
                      ++..    ...+++..||+.
T Consensus       394 l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          394 IFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             EEEEEECSSCCCEEEEEETT
T ss_pred             EEEEEeCCCCCCEEEEEECC
Confidence            6533    235789899874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.57  E-value=1.1e-13  Score=128.27  Aligned_cols=148  Identities=17%  Similarity=0.133  Sum_probs=100.3

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCC---CccceEEEEEcCCCCCCEEEEEeCC---------CcE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA---HTEWVSCVRFSPNTLQPTIVSASWD---------RTV  151 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~d---------g~i  151 (303)
                      ...+.|+|++++++++  |+.|++|+..+.....+.....   .......+.|+|++  ..++.++.+         +.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg--~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS--SEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC--CEEEEEECCeeeEEEccceEE
Confidence            4578999999988886  8999999986543332221111   11122347899997  356666654         567


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-C-CCeE----------------
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-A-GAVI----------------  213 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~-~~~v----------------  213 (303)
                      .+||+.+++.. .+..+...+..++|||||+.||.++ ++.|++||+.+++...... . ...+                
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            79999988764 3566777899999999999998884 7899999998876543211 1 1112                


Q ss_pred             -EEEEEcCCCeEEEEEc--CCcEEEEe
Q 048118          214 -HALCFSPNRYWLCAAT--EQSIKIWD  237 (303)
Q Consensus       214 -~~~~~s~~~~~l~~~~--~~~i~iwd  237 (303)
                       ..++|||||..|+...  +..+.+|+
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~  199 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIE  199 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEE
Confidence             2488999998776542  33344444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=1.5e-13  Score=117.57  Aligned_cols=231  Identities=15%  Similarity=0.083  Sum_probs=139.9

Q ss_pred             eeeeecCCCCCcEEEEe-cCCC--cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCC-EEEEEEeeCC
Q 048118           18 VTAIATPIDNSDMIVTA-SRDK--SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKD-VLSVAFSIDN   93 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~-s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~-i~~i~~~~~~   93 (303)
                      +..++|+|++. +|+.. ..++  .|.+|++...+.     . .+.                  .+... ...+.|+|+|
T Consensus        38 ~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~~-----~-~l~------------------~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           38 FYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQA-----V-QLT------------------EGKGDNTFGGFISTDE   92 (396)
T ss_dssp             TTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTEE-----E-ECC------------------CSSCBCTTTCEECTTS
T ss_pred             eecCcCCCCCC-EEEEEEecCCCceEEEEECCCCcE-----E-Eee------------------cCCCCccccceECCCC
Confidence            67888999865 55544 3333  577777653321     0 010                  11111 2236799999


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEE-------------------EEEcCCCCCCEEEEE-----eCCC
Q 048118           94 RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSC-------------------VRFSPNTLQPTIVSA-----SWDR  149 (303)
Q Consensus        94 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~~~~~~-----~~dg  149 (303)
                      ++|+.++.++.|.+|+..+.....+...  +......                   +.|+|++.  .++..     ..+.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTV--DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTC  168 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEEC--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEec--ccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcc
Confidence            9999999999999999865433222221  1111211                   23455542  22221     3556


Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEECC-CCCEEEEEeCC------CeEEEEeCCCCceEEEecC--CCeEEEEEEcC
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSP-DGSLCASGGKD------GVILLWDLAEGKRLYSLDA--GAVIHALCFSP  220 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~  220 (303)
                      .|.+||+.+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+..++.......  ...+..++|+|
T Consensus       169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred             eEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence            7999999887765443 4566788999999 78877666543      4688899876543222221  23578899999


Q ss_pred             CCeEEEE-EcC-----CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC-CCCEEEEee---
Q 048118          221 NRYWLCA-ATE-----QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSGY---  290 (303)
Q Consensus       221 ~~~~l~~-~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~gs---  290 (303)
                      ++..|+. +.+     +.|++||+++++......                  ...    .. ..|+| +|+++++++   
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------------------~~~----~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV------------------MPP----CS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE------------------CCS----EE-EEEECSSSSEEEEEECCC
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCCCeEEeee------------------CCC----CC-CCccCCCCceEEEecCCc
Confidence            9875443 332     349999998775432110                  000    12 67999 999888765   


Q ss_pred             -------------cCCeEEEEecc
Q 048118          291 -------------TDGVIRVWGIG  301 (303)
Q Consensus       291 -------------~Dg~v~~w~~~  301 (303)
                                   .++.|.+||+.
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             ----------CCCCCCEEEEEETT
T ss_pred             ceeeccccccccCCCCcEEEEecc
Confidence                         34789999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=1.2e-11  Score=103.46  Aligned_cols=234  Identities=9%  Similarity=0.012  Sum_probs=153.2

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      ...+.++  +..++++...++.|.+||....+..     ..+                   .....+..+++++++.+++
T Consensus        46 ~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~-----~~i-------------------~~~~~p~~i~~~~~g~lyv   99 (328)
T 3dsm_A           46 AQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEV-----GRI-------------------TGFTSPRYIHFLSDEKAYV   99 (328)
T ss_dssp             EEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEE-----EEE-------------------ECCSSEEEEEEEETTEEEE
T ss_pred             ceEEEEE--CCEEEEEEcCCCEEEEEECcccEEE-----EEc-------------------CCCCCCcEEEEeCCCeEEE
Confidence            4556554  3567777788899999998654321     111                   1124567899999986555


Q ss_pred             EEeCCCcEEEEecCCceee-eeecCC--CCccceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCceeEEEEcCCCCCe
Q 048118           98 SASRDRTIKLWNTLGECKY-TIQEGD--AHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNCKLRATLAGHTGYV  172 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~-~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i  172 (303)
                      +...++.|.+||..+.... .+....  ........+++. +   ..+..+.  .++.|.++|..+++....+... ...
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-~---~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p  174 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-G---KYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQP  174 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE-T---TEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCB
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE-C---CEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCc
Confidence            5548899999998654332 222111  011123445552 2   2344444  4889999999998887777643 345


Q ss_pred             eEEEECCCCCEEEEEeCC----------CeEEEEeCCCCceEEEecC--CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCC
Q 048118          173 NTVAVSPDGSLCASGGKD----------GVILLWDLAEGKRLYSLDA--GAVIHALCFSPNRYWLCAATEQSIKIWDLES  240 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~  240 (303)
                      ..+.++|+|++++++..+          +.|.++|..+++....+..  +.....++|+|++..+.++.. .|++||..+
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t  253 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEA  253 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTC
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCC
Confidence            678999999877776654          7999999998887766643  446889999998876666554 999999987


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC-CCEEEEe----ecCCeEEEEecc
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD-GSTLFSG----YTDGVIRVWGIG  301 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~g----s~Dg~v~~w~~~  301 (303)
                      +++......                  .........++++|+ +..+++.    ..++.|.+||..
T Consensus       254 ~~~~~~~~~------------------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          254 DRVPVRPFL------------------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SSCCSSCSB------------------CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             Cceeeeeee------------------cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            765311000                  000123467899995 5555565    678999999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=2.9e-12  Score=108.65  Aligned_cols=72  Identities=8%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             EEECCCCCEEEEEeC-----------CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC--
Q 048118          175 VAVSPDGSLCASGGK-----------DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK--  241 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~--  241 (303)
                      ++++|+++.+.++..           ..+|.+||+.+++.+.++..+. ...++|+|++.+|+++.++.|.+||.+++  
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l  337 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEP  337 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSC
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcc
Confidence            688999887766543           3489999999999999987777 99999999998777776799999999998  


Q ss_pred             ceeeee
Q 048118          242 SIVEDL  247 (303)
Q Consensus       242 ~~~~~~  247 (303)
                      +++..+
T Consensus       338 ~~~~~i  343 (361)
T 2oiz_A          338 KLLRTI  343 (361)
T ss_dssp             EEEEEE
T ss_pred             eeeEEe
Confidence            776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=1.6e-13  Score=117.29  Aligned_cols=255  Identities=13%  Similarity=0.044  Sum_probs=142.0

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceE---EEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ---DVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .+.|+|++ ++|+.++.++.|.+|++...+..     .....+..+..   .+++........  -....+.|+|+++.+
T Consensus        85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~--~~~~~~~~spdg~~~  156 (396)
T 3c5m_A           85 GGFISTDE-RAFFYVKNELNLMKVDLETLEEQ-----VIYTVDEEWKGYGTWVANSDCTKLVG--IEILKRDWQPLTSWE  156 (396)
T ss_dssp             TCEECTTS-SEEEEEETTTEEEEEETTTCCEE-----EEEECCTTEEEEEEEEECTTSSEEEE--EEEEGGGCCCCCSHH
T ss_pred             cceECCCC-CEEEEEEcCCcEEEEECCCCCcE-----EEEecccccCCCCCEEEeccCCcccc--ccccccccCCCCcce
Confidence            36788875 57888888889999998654321     11111111111   111111110000  000113567888776


Q ss_pred             EEE-----eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcC-CCCCCEEEEEeCC------CcEEEEECCCceeEEE
Q 048118           97 VSA-----SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP-NTLQPTIVSASWD------RTVKVWNLSNCKLRAT  164 (303)
Q Consensus        97 ~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~d------g~i~iwd~~~~~~~~~  164 (303)
                      +..     ..+..|.+||+.+.....+.   .+...+..+.|+| ++  ..++..+.+      ..|.+||+.+++... 
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~---~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-  230 (396)
T 3c5m_A          157 KFAEFYHTNPTCRLIKVDIETGELEVIH---QDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRK-  230 (396)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEE-
T ss_pred             eeeeeccCCCcceEEEEECCCCcEEeec---cCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeE-
Confidence            544     35667888997654332222   2344578899999 54  234444332      468888987655333 


Q ss_pred             EcCC--CCCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceEEEecCCCeEEEEEEcC-CCeEEEEEc-------
Q 048118          165 LAGH--TGYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKRLYSLDAGAVIHALCFSP-NRYWLCAAT-------  229 (303)
Q Consensus       165 ~~~~--~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-------  229 (303)
                      +..+  ...+..+.|+|+|+.|+.++.+     +.|.+||+.+++......... .. ..|+| ++.+++.+.       
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~  308 (396)
T 3c5m_A          231 IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDV  308 (396)
T ss_dssp             SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----
T ss_pred             eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceee
Confidence            3222  2257788999999987776543     459999998876533222222 33 88999 987776532       


Q ss_pred             ----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-CCeEEEE
Q 048118          230 ----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-DGVIRVW  298 (303)
Q Consensus       230 ----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-Dg~v~~w  298 (303)
                                +..|++||+.+++.. .+.....      ....   ............+|+|+|+.|+.++. ++...+|
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~------~~~~---~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          309 ADADSYNIENDPFLYVLNTKAKSAQ-KLCKHST------SWDV---LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             ------CCCCCCEEEEEETTTTBCC-EEEECCC------CCCC---BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccccccccCCCCcEEEEecccCceE-EccCCCC------cccc---ccccccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence                      367999999877542 1211000      0000   00000001234679999998776654 6666676


Q ss_pred             ec
Q 048118          299 GI  300 (303)
Q Consensus       299 ~~  300 (303)
                      .+
T Consensus       379 ~~  380 (396)
T 3c5m_A          379 IA  380 (396)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=2.6e-12  Score=118.38  Aligned_cols=241  Identities=11%  Similarity=-0.012  Sum_probs=143.4

Q ss_pred             ccccceeeeecCCCCCcEEE-----EecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           13 AHTDMVTAIATPIDNSDMIV-----TASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~-----t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +|...+..++|+|++. +||     +|+.+.+|++||+..++...       ..              .+...  ....+
T Consensus       118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~-------~~--------------~~~~~--~~~~~  173 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSK-------VD--------------VIEGG--KYATP  173 (695)
T ss_dssp             SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCS-------SC--------------CBSCC--TTCCC
T ss_pred             CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcC-------Cc--------------ccCcc--cccce
Confidence            4656788999999864 666     44556789999997643210       00              00000  01468


Q ss_pred             EEeeCCCEEEEEeCCCc-------------EEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC---
Q 048118           88 AFSIDNRQIVSASRDRT-------------IKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR---  149 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~-------------i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg---  149 (303)
                      +|+|+|+.|+.++.|..             |.+|++.+...  ..+.....+...+..+.|+|++.  .++..+.++   
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~  251 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSE  251 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTE
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCc
Confidence            89999999999988776             99999864321  12222233445678899999973  344444444   


Q ss_pred             -cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe---CCCeEEEEeCCCCce---EEEecC--CCeEEEEEEcC
Q 048118          150 -TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG---KDGVILLWDLAEGKR---LYSLDA--GAVIHALCFSP  220 (303)
Q Consensus       150 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~--~~~v~~~~~s~  220 (303)
                       .|++++..+++.. .+..+...+....+ +++.+++.+.   .++.|.+||+.+++.   ...+..  ...+..++|+ 
T Consensus       252 ~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-  328 (695)
T 2bkl_A          252 NDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-  328 (695)
T ss_dssp             EEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred             eEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence             6777766555433 34445555566666 5566444443   258999999987642   222222  4567888888 


Q ss_pred             CCeEE-EEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEE----EeecCCe
Q 048118          221 NRYWL-CAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF----SGYTDGV  294 (303)
Q Consensus       221 ~~~~l-~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~----~gs~Dg~  294 (303)
                      ++.++ ....++..++|.+. .++....+...                   ....+..++++|++..|+    +....++
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-------------------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP-------------------GVGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECCCS-------------------SSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC-------------------CCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence            44444 44567766666543 23322222110                   012344567889888766    3334578


Q ss_pred             EEEEecc
Q 048118          295 IRVWGIG  301 (303)
Q Consensus       295 v~~w~~~  301 (303)
                      |.+||+.
T Consensus       390 v~~~d~~  396 (695)
T 2bkl_A          390 IYKTSVS  396 (695)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.52  E-value=1.1e-11  Score=103.84  Aligned_cols=164  Identities=19%  Similarity=0.197  Sum_probs=117.0

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCC------------------------CcEEEEecCCceeeeeecCCCCccceEEEEEcCC
Q 048118           81 TKDVLSVAFSIDNRQIVSASRD------------------------RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN  136 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~  136 (303)
                      -+.+.+++++++|+++++...+                        +.|.+||......... ....+-.....++++|+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEECCC
Confidence            3578899999999988888777                        3689999753322211 12233345788999998


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCce-eEEEE---------cCCCCCeeEEEECC-CCCEEEEEe-CCCeEEEEeCCCCceE
Q 048118          137 TLQPTIVSASWDRTVKVWNLSNCK-LRATL---------AGHTGYVNTVAVSP-DGSLCASGG-KDGVILLWDLAEGKRL  204 (303)
Q Consensus       137 ~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~v~iwd~~~~~~~  204 (303)
                      +  ..+++...++.|+.||..... ....+         ..+......++++| +++++++.+ .+++|++|| ..++.+
T Consensus       102 g--~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          102 G--NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             S--CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             C--CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            6  367777788999999986542 44444         23444688999999 788888886 699999999 556666


Q ss_pred             EEecC-C----------CeEEEEEEcCC-CeEEEEE-cCCcEEEEeCCCCceeeeee
Q 048118          205 YSLDA-G----------AVIHALCFSPN-RYWLCAA-TEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       205 ~~~~~-~----------~~v~~~~~s~~-~~~l~~~-~~~~i~iwd~~~~~~~~~~~  248 (303)
                      ..+.. .          .....++++|+ +.++++. .++.|++||.++++.+..+.
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            55531 1          23788999998 6665554 57789999998787776553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.50  E-value=2.4e-11  Score=103.05  Aligned_cols=190  Identities=15%  Similarity=0.141  Sum_probs=112.9

Q ss_pred             EEEEeeCCCEEEEEe----------CCCcEEEEecCCcee-eeeecCCC---CccceEEEEEcCCCCCCEEEEEeC--CC
Q 048118           86 SVAFSIDNRQIVSAS----------RDRTIKLWNTLGECK-YTIQEGDA---HTEWVSCVRFSPNTLQPTIVSASW--DR  149 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~----------~d~~i~vw~~~~~~~-~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~--dg  149 (303)
                      .++|+|++++++++.          .++.|.+||...... ..+.....   +......++++|++.  .++++..  ++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~  131 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPAT  131 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCC
Confidence            789999999988876          367899999754222 22221111   112345688999873  4555543  68


Q ss_pred             cEEEEECCCceeEEE-EcCCCCCeeEEEECCCC-CEEEEEeCCCeEEEEeCCC-CceE----------------------
Q 048118          150 TVKVWNLSNCKLRAT-LAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAE-GKRL----------------------  204 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~-~~~~----------------------  204 (303)
                      .|.+||+.+++.... +..  .....+.+.|++ ..+++.+.||++.+|++.. ++..                      
T Consensus       132 ~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  209 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPAL  209 (361)
T ss_dssp             EEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEE
T ss_pred             eEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecc
Confidence            999999999887766 432  112223344433 3344444455554444432 1111                      


Q ss_pred             ---------------------------EEecCC-----------CeEEEEEEcCCCeEEEE-Ec-----------CCcEE
Q 048118          205 ---------------------------YSLDAG-----------AVIHALCFSPNRYWLCA-AT-----------EQSIK  234 (303)
Q Consensus       205 ---------------------------~~~~~~-----------~~v~~~~~s~~~~~l~~-~~-----------~~~i~  234 (303)
                                                 ..+...           .....++|+|++..+.+ ..           .+.|.
T Consensus       210 ~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~  289 (361)
T 2oiz_A          210 DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW  289 (361)
T ss_dssp             CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred             cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence                                       000000           00011577887544333 22           24788


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +||+++++.+..+...                    .  +..++|+|||++|++++. +.|.+||...
T Consensus       290 viD~~t~~~v~~i~~~--------------------~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t  334 (361)
T 2oiz_A          290 VMDTKTKQRVARIPGR--------------------D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ  334 (361)
T ss_dssp             EEETTTTEEEEEEECT--------------------T--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred             EEECCCCcEEEEEecC--------------------C--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence            9998888877665431                    1  367899999999998887 9999999753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.48  E-value=6.8e-10  Score=90.88  Aligned_cols=240  Identities=13%  Similarity=0.064  Sum_probs=158.8

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +..+...+.++++++++ .++++...++.|..|+.. ....    .            +..      ..+...+..++++
T Consensus        10 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~----~------------~~~------~~~~~~~~~i~~~   65 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKIT----E------------YPL------PTPDAKVMCLTIS   65 (299)
T ss_dssp             CCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEE----E------------EEC------SSTTCCEEEEEEC
T ss_pred             CCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeE----E------------ecC------CcccCceeeEEEC
Confidence            44455678999999765 577777668899999865 2110    0            000      0123567889999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE-EEcCCC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA-TLAGHT  169 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~  169 (303)
                      +++.++++...++.|..|+..+... ... .......+.++++++++  ..+++...++.|..||. +++... ......
T Consensus        66 ~~g~l~v~~~~~~~i~~~~~~g~~~-~~~-~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~  140 (299)
T 2z2n_A           66 SDGEVWFTENAANKIGRITKKGIIK-EYT-LPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DGKIREYELPNKG  140 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEE-EEE-CSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             CCCCEEEeCCCCCeEEEECCCCcEE-EEe-CCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CCCEEEecCCCCC
Confidence            9998888777788899998754321 111 11123457889998875  35565556789999998 544332 223344


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE-ec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeee
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS-LD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVED  246 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~  246 (303)
                      ..+..+++.++++.+++...++.|..||. +++.... .. ....+..+++++++.+.++. .++.|.+||. +++... 
T Consensus       141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-  217 (299)
T 2z2n_A          141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-  217 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-
T ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-
Confidence            56889999999988887777889999998 5554332 22 23467889999988755554 4678999998 554321 


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +..                  ......+..+++.++|...++...++.|..||.
T Consensus       218 ~~~------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          218 FKI------------------PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEC------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             EEC------------------CCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            111                  011223567889999887776667888888875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.47  E-value=3e-11  Score=101.46  Aligned_cols=219  Identities=13%  Similarity=0.146  Sum_probs=129.7

Q ss_pred             ceeeeecCCCCCcEEEEecCC---Cc--EEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           17 MVTAIATPIDNSDMIVTASRD---KS--IIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d---~~--i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      .+..+.|+|++. +|+.++.+   +.  |.+|++...+.     ..                   +..+.. +..++|+|
T Consensus        60 ~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~-----~~-------------------l~~~~~-~~~~~wsp  113 (347)
T 2gop_A           60 NATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSS-----KK-------------------ILEAKN-IRSLEWNE  113 (347)
T ss_dssp             SCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEE-----EE-------------------EEEESE-EEEEEECT
T ss_pred             cCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCce-----EE-------------------EEcCCC-ccceeECC
Confidence            466789999864 66666543   34  55555543211     10                   111223 77889999


Q ss_pred             CCCEEEEEeCC---------------------------CcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           92 DNRQIVSASRD---------------------------RTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        92 ~~~~l~t~~~d---------------------------~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                      +|+.|+.++.+                           ..|.+|++.+... ..+..    . .+..+.|+|++   .++
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg---~~~  185 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDK---IVV  185 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTE---EEE
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCCCe---EEE
Confidence            99988877642                           4688888865433 23322    1 46788999986   455


Q ss_pred             EEeCCC-------cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC--------CeEEEEeCCCCceEEEec
Q 048118          144 SASWDR-------TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD--------GVILLWDLAEGKRLYSLD  208 (303)
Q Consensus       144 ~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~  208 (303)
                      ++..++       ...+|.+.+++.. .+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++......
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  259 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD  259 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred             EEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence            554432       3344433354433 33333 445444  8999988777644        4788888  444332222


Q ss_pred             -CCCeEEE-EEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118          209 -AGAVIHA-LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL  286 (303)
Q Consensus       209 -~~~~v~~-~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  286 (303)
                       ....+.. +.|+ ++.++++..++.+++| +.+++... +.                    .....+.+++|+|  ..+
T Consensus       260 ~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~-~~--------------------~~~~~v~~~~~s~--~~~  314 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKP-IA--------------------KGRHWIMGFDVDE--IVV  314 (347)
T ss_dssp             TCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEE-EE--------------------CSSSEEEEEEESS--SEE
T ss_pred             cCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEE-Ee--------------------cCCCeEEeeeeeC--cEE
Confidence             2456775 8999 8833445567889998 76443211 10                    0122456788999  677


Q ss_pred             EEeecCCeE-EEEec
Q 048118          287 FSGYTDGVI-RVWGI  300 (303)
Q Consensus       287 ~~gs~Dg~v-~~w~~  300 (303)
                      ++++.++.. ++|.+
T Consensus       315 ~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          315 YLKETATRLRELFTW  329 (347)
T ss_dssp             EEEECSSSCCEEEEE
T ss_pred             EEEcCCCChHHheEe
Confidence            787777765 77754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.45  E-value=3.6e-11  Score=101.00  Aligned_cols=182  Identities=9%  Similarity=0.117  Sum_probs=111.6

Q ss_pred             CEEEEEEeeCCCEEEEEeCC---Cc--EEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC----------
Q 048118           83 DVLSVAFSIDNRQIVSASRD---RT--IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW----------  147 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d---~~--i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------  147 (303)
                      .+..++|+|+|++|+..+.+   +.  |.+|++.+.....+..   ... +..++|+|++.  .++.++.          
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---AKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---ESE-EEEEEECTTSS--EEEEEEECCCC------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---CCC-ccceeECCCCC--EEEEEEccCCCcCCcEE
Confidence            45678999999998877654   33  6667765543333322   122 88899999873  4555442          


Q ss_pred             -----------------CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC-------eEEEEeCCCCce
Q 048118          148 -----------------DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG-------VILLWDLAEGKR  203 (303)
Q Consensus       148 -----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~  203 (303)
                                       ...|.+||+.+++....+.. . .+..+.|+|+| +++++..+.       ...+|.+.+++.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence                             24688999988876344444 3 78899999999 777775542       334444334433


Q ss_pred             EEEecCCCeEEEEEEcCCCeEEEEEc-C--------CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeE
Q 048118          204 LYSLDAGAVIHALCFSPNRYWLCAAT-E--------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                       ..+.....+..  ++|+|..++... +        ..|++||  +++... +.                   ..+...+
T Consensus       211 -~~l~~~~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~-------------------~~~~~~~  265 (347)
T 2gop_A          211 -EKMFEKVSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-IL-------------------DEVDRGV  265 (347)
T ss_dssp             -EEEEEEESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-SS-------------------TTCCSEE
T ss_pred             -EEeccCcceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEe-cc-------------------ccCCccc
Confidence             22211123333  389987554432 2        3688888  433221 10                   1111223


Q ss_pred             EE-EEEcCCCCEEEEeecCCeEEEEecc
Q 048118          275 TS-LNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       275 ~~-~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .. +.|+ ++ ++++++.|+.+++| +.
T Consensus       266 ~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          266 GQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             CCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            43 7899 88 99999999999999 74

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.44  E-value=2.5e-11  Score=111.75  Aligned_cols=198  Identities=10%  Similarity=0.008  Sum_probs=124.2

Q ss_pred             cccCCEEEEEEeeCCCEEE-----EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc---
Q 048118           79 GHTKDVLSVAFSIDNRQIV-----SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT---  150 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~-----t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~---  150 (303)
                      +|...+..++|+|+|++|+     .|+.+..|++||+.+..........  ......++|+|++  ..|+.++.+..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg--~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDS--KGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTS--SEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCC--CEEEEEEecCCCCC
Confidence            4555688899999999988     4455678999998664332000000  1111568899987  36777777665   


Q ss_pred             ----------EEEEECCCce----eEEEEcCCCCCeeEEEECCCCCEEEEEeCCC----eEEEEeCCCCceEEEecCCCe
Q 048118          151 ----------VKVWNLSNCK----LRATLAGHTGYVNTVAVSPDGSLCASGGKDG----VILLWDLAEGKRLYSLDAGAV  212 (303)
Q Consensus       151 ----------i~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~  212 (303)
                                |++|++.+++    ++.....+...+..+.|+|+|++|+.++.++    .|.+||..+++..........
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  273 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA  273 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence                      9999998765    2333334556788999999999988777665    677777655543222222223


Q ss_pred             EEEEEEcCCCeEEEEEc----CCcEEEEeCCCCce--eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE
Q 048118          213 IHALCFSPNRYWLCAAT----EQSIKIWDLESKSI--VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL  286 (303)
Q Consensus       213 v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  286 (303)
                      +....+ +++.+++.+.    ++.|++||+++++.  ...+..                  ......+..++|+ ++.++
T Consensus       274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~------------------~~~~~~l~~~~~~-~~~lv  333 (695)
T 2bkl_A          274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP------------------EDSSASLLSVSIV-GGHLS  333 (695)
T ss_dssp             CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC------------------CCSSCEEEEEEEE-TTEEE
T ss_pred             eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec------------------CCCCCeEEEEEEE-CCEEE
Confidence            344445 4544444443    47899999876532  011100                  0001234556777 66788


Q ss_pred             EEeecCCeEEEEec
Q 048118          287 FSGYTDGVIRVWGI  300 (303)
Q Consensus       287 ~~gs~Dg~v~~w~~  300 (303)
                      ++...|+..++|.+
T Consensus       334 ~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          334 LEYLKDATSEVRVA  347 (695)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             EEEEECCEEEEEEE
Confidence            89999999998865

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=5e-12  Score=107.12  Aligned_cols=180  Identities=9%  Similarity=0.001  Sum_probs=126.8

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee--------eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK--------YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      +++.+++++...++++|+.++ +++|++.....        ........... |..++|  ++  ..++++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~--~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG--DQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET--TEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC--CEEEEE-cCCcEEEE
Confidence            578899999999999999975 66698532110        00000012334 899999  43  466666 88999999


Q ss_pred             ECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEE
Q 048118          155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIK  234 (303)
Q Consensus       155 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~  234 (303)
                      |+.+.........|...+.++.+.+.  .+++++.||.+.+||+.+++...   ....|.+++|||+| ++++..||.++
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence            99776555556667778888877654  38889999999999999776543   23579999999999 56778899999


Q ss_pred             EEeCCCCce--eeeeeeccccccccccCccceeecc---ccceeEEEEEEcCCCCEEEEe
Q 048118          235 IWDLESKSI--VEDLKVDLKTEAEKSEATTATTTIK---KKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       235 iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      +|+.+.++.  ...+...  +            .+.   ++...+.++.|.+++.++++-
T Consensus       186 ~~~~~~~~~~~k~~I~~P--p------------~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLP--S------------ELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEETTEEEEEEEECCC--H------------HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcCCCccccccceecCC--c------------ccccccCCCeeEEEEEEecCCeEEEEE
Confidence            999877664  3333211  0            011   234667889999988887763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=5.3e-10  Score=92.38  Aligned_cols=240  Identities=10%  Similarity=0.075  Sum_probs=146.9

Q ss_pred             cceeeeecCCCCCcEEEE-------ecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           16 DMVTAIATPIDNSDMIVT-------ASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t-------~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      ....+++|++++ .++++       +..++.|..|+.......      .+          .. +  ...++...+..++
T Consensus        18 ~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~------~~----------~~-~--~~~~~~~~~~~i~   77 (314)
T 1pjx_A           18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKT------VI----------CK-P--EVNGYGGIPAGCQ   77 (314)
T ss_dssp             TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEE------EE----------EC-C--EETTEECCEEEEE
T ss_pred             CCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEE------EE----------Ee-c--ccCCCCCCCceEE
Confidence            345688888654 67777       567889999986533211      00          00 0  0012345688999


Q ss_pred             EeeC-CCEEEEEeCCCcEEEEecCCceeeee-ecC--CCCccceEEEEEcCCCCCCEEEEEeCC---------------C
Q 048118           89 FSID-NRQIVSASRDRTIKLWNTLGECKYTI-QEG--DAHTEWVSCVRFSPNTLQPTIVSASWD---------------R  149 (303)
Q Consensus        89 ~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~d---------------g  149 (303)
                      ++++ +.++++. ..+.|.+|+..+.. ... ...  ......+.++++++++  ...++...+               +
T Consensus        78 ~~~~~g~l~v~~-~~~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           78 CDRDANQLFVAD-MRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             ECSSSSEEEEEE-TTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EecCCCcEEEEE-CCCCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCC
Confidence            9999 6655544 34478889876322 211 111  1112347789999876  344544433               4


Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEEC----CCCCEEEEE-eCCCeEEEEeCC-CCc-----eEEEecCC--CeEEEE
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVS----PDGSLCASG-GKDGVILLWDLA-EGK-----RLYSLDAG--AVIHAL  216 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~v~iwd~~-~~~-----~~~~~~~~--~~v~~~  216 (303)
                      .|..||.. ++.... ..+......++++    |+++.+..+ ..++.|.+||+. .++     ....+...  .....+
T Consensus       154 ~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            67777765 443332 2233456788999    998765444 568899999986 343     12222222  567889


Q ss_pred             EEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE-EEeecCCe
Q 048118          217 CFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL-FSGYTDGV  294 (303)
Q Consensus       217 ~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~gs~Dg~  294 (303)
                      ++++++.+.++. .++.|.+||.++++.+..+..                    ....+.+++|+|+++.| ++...++.
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--------------------~~~~~~~i~~~~dg~~l~v~~~~~~~  291 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--------------------PFEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--------------------SSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--------------------CCCCceeEEECCCCCEEEEEeCCCCe
Confidence            999998765554 678999999886655433221                    11235678899999954 55566789


Q ss_pred             EEEEecc
Q 048118          295 IRVWGIG  301 (303)
Q Consensus       295 v~~w~~~  301 (303)
                      |..|++.
T Consensus       292 l~~~~~~  298 (314)
T 1pjx_A          292 VWKFEWQ  298 (314)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            9999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=1.8e-11  Score=103.69  Aligned_cols=180  Identities=12%  Similarity=0.081  Sum_probs=124.1

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .++.+++++.. +++++|+.+ .+++|++....+........            +.+ .....+.+ |+.++|  ++.+|
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~------------~~~-~~~~~lp~-V~~l~f--d~~~L  100 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTP------------LTF-KWEKEIPD-VIFVCF--HGDQV  100 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCC------------CCC-SEEEECTT-EEEEEE--ETTEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhcccccc------------ccc-eEEeeCCC-eeEEEE--CCCEE
Confidence            47888888764 678888887 56669976432111000000            000 01123455 899999  88899


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEE
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVA  176 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  176 (303)
                      +++ .++.|++||..........  ..+...+.++.+.+.    .++.++.||.+.+||++++....    +...|++++
T Consensus       101 ~v~-~~~~l~v~dv~sl~~~~~~--~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~  169 (388)
T 1xip_A          101 LVS-TRNALYSLDLEELSEFRTV--TSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD  169 (388)
T ss_dssp             EEE-ESSEEEEEESSSTTCEEEE--EECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred             EEE-cCCcEEEEEchhhhccCcc--ceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence            888 8899999997543221111  123445777776653    37888999999999998776543    346899999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCce--EEEe------c----CCCeEEEEEEcCCCeEEEE
Q 048118          177 VSPDGSLCASGGKDGVILLWDLAEGKR--LYSL------D----AGAVIHALCFSPNRYWLCA  227 (303)
Q Consensus       177 ~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~------~----~~~~v~~~~~s~~~~~l~~  227 (303)
                      |||.|  ++.|..||++++|+...++.  ..++      .    ....|.+++|.+++.++++
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999  67899999999998877664  4455      1    3578999999999887765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.39  E-value=2.7e-09  Score=95.45  Aligned_cols=228  Identities=13%  Similarity=0.079  Sum_probs=150.7

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL  107 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~v  107 (303)
                      ..++++...+++|.++|....+..     ..+                   .....+..+.++|+|+++++++.|+.|.+
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~-----~~i-------------------~~g~~p~~v~~SpDGr~lyv~~~dg~V~v  222 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIK-----TVL-------------------DTGYAVHISRLSASGRYLFVIGRDGKVNM  222 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEE-----EEE-------------------ECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEE-----EEE-------------------eCCCCccceEECCCCCEEEEEcCCCeEEE
Confidence            357788888999999998654321     111                   01224568999999999999999999999


Q ss_pred             EecC--Cc-eeeeeecCCCCccceEEEEEc----CCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC----------C-C
Q 048118          108 WNTL--GE-CKYTIQEGDAHTEWVSCVRFS----PNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG----------H-T  169 (303)
Q Consensus       108 w~~~--~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~----------~-~  169 (303)
                      ||+.  .. ....+.   .. .....+.|+    |++. ..+++...++.+.++|..+.+.+..+.-          | .
T Consensus       223 iD~~~~t~~~v~~i~---~G-~~P~~ia~s~~~~pDGk-~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~  297 (567)
T 1qks_A          223 IDLWMKEPTTVAEIK---IG-SEARSIETSKMEGWEDK-YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  297 (567)
T ss_dssp             EETTSSSCCEEEEEE---CC-SEEEEEEECCSTTCTTT-EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             EECCCCCCcEeEEEe---cC-CCCceeEEccccCCCCC-EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence            9984  22 222222   11 124688999    5763 3455566679999999988887766542          1 1


Q ss_pred             CCeeEEEECCCCCEEE-EEeCCCeEEEEeCCCCc--eEEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCcee
Q 048118          170 GYVNTVAVSPDGSLCA-SGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIV  244 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~  244 (303)
                      ..+..+..++++..++ ....+|+|.++|....+  .+..+......+.+.|+|++.++.++  .++.|.++|+++++++
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence            2577888888876554 44567999999987653  23345556677889999998765443  4689999999999877


Q ss_pred             eeeee-ccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee-cCCeEEEEecc
Q 048118          245 EDLKV-DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       245 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs-~Dg~v~~w~~~  301 (303)
                      ..+.+ ...+                |...-..+ ++|++. ..+++. .++.|.++|..
T Consensus       378 ~~i~vgg~~P----------------hpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          378 AIEDTGGQTP----------------HPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             EEEECSSSSB----------------CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             EEEeccCcCC----------------CCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence            65543 1110                00000111 478754 444443 56899999875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.39  E-value=7.3e-10  Score=92.57  Aligned_cols=190  Identities=13%  Similarity=0.077  Sum_probs=129.8

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ....+.+. .+.++++...++.|.+||...... ..+.    .......+++++++  ...++...++.|.+||..+++.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEETT--EEEEEEBSCSEEEEEETTTTEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeCCC--eEEEEECCCCeEEEEECCCCeE
Confidence            34566664 455666666789999999864332 2221    12346788888775  2344444789999999999887


Q ss_pred             EEEEcCCC-----CCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcC-----
Q 048118          162 RATLAGHT-----GYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE-----  230 (303)
Q Consensus       162 ~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----  230 (303)
                      ...+....     .....+++ .+++.+++.. .+++|.++|+.+++.+.++........++++|++.+++++..     
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred             EEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCC
Confidence            76665432     13456677 3444444443 489999999999988887766666678899999886666542     


Q ss_pred             ------CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          231 ------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       231 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                            +.|.++|.+++++...+.+..                   ......++++|++++|.++..  .|.+||+.
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~~~~~~~-------------------g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEKQFKFKL-------------------GDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEEEEECCT-------------------TCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             ccccCCceEEEEECCCCeEEEEEecCC-------------------CCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence                  689999999888765543211                   012367899999998887765  88888874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=2.5e-10  Score=105.86  Aligned_cols=240  Identities=10%  Similarity=0.008  Sum_probs=138.6

Q ss_pred             cccceeeeecCCCCCcEEEEecCC-----CcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRD-----KSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      |...+..++|+|++. +||.++.+     .+|++||+..++....    .       +             +...+..++
T Consensus       161 ~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~-------~-------------~~~~~~~~~  215 (741)
T 1yr2_A          161 GATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLAD----E-------L-------------KWVKFSGLA  215 (741)
T ss_dssp             --EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEE----E-------E-------------EEEESCCCE
T ss_pred             CCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCc----c-------C-------------CCceeccEE
Confidence            434677889999864 56655443     3699999875432100    0       0             001123578


Q ss_pred             EeeCCCEEEEEeCCCc--------------EEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeC-----
Q 048118           89 FSIDNRQIVSASRDRT--------------IKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-----  147 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~--------------i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  147 (303)
                      |+|+ +.|+.++.|+.              |.+|++.+...  ..+.....+...+..+.|+|++.  .++..+.     
T Consensus       216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~  292 (741)
T 1yr2_A          216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDP  292 (741)
T ss_dssp             ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCS
T ss_pred             EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCC
Confidence            9999 88888776654              78888743321  12222222333578899999873  4544443     


Q ss_pred             CCcEEEEECCCc--eeEEEEcCCCCCeeEEEECCCCCEEEEEeC----CCeEEEEeCCCCc-eEEE-ec-CCCeEEEEEE
Q 048118          148 DRTVKVWNLSNC--KLRATLAGHTGYVNTVAVSPDGSLCASGGK----DGVILLWDLAEGK-RLYS-LD-AGAVIHALCF  218 (303)
Q Consensus       148 dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~-~~~~-~~-~~~~v~~~~~  218 (303)
                      ...|++||+.++  +....+..+...+.... +|+|+.|+..+.    .+.|.+||+.++. .... +. ....+..+++
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~  371 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI  371 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence            348999999776  31344555554555443 488988877765    3469999998742 2222 22 2345667788


Q ss_pred             cCCCeEEEEEcCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEE----EeecCC
Q 048118          219 SPNRYWLCAATEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF----SGYTDG  293 (303)
Q Consensus       219 s~~~~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~----~gs~Dg  293 (303)
                      +.+..++....++..++|.+. .++....+..                   .....+..++++|+++.|+    +....+
T Consensus       372 ~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-------------------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          372 AGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-------------------PGIGSASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             EBTEEEEEEEETTEEEEEEEETTSCEEEECBC-------------------SSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred             ECCEEEEEEEECCEEEEEEEeCCCCceeeccC-------------------CCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            733334444557765555432 2333222211                   0123456688899988665    233457


Q ss_pred             eEEEEecc
Q 048118          294 VIRVWGIG  301 (303)
Q Consensus       294 ~v~~w~~~  301 (303)
                      +|.+||+.
T Consensus       433 ~i~~~d~~  440 (741)
T 1yr2_A          433 TVLALDPA  440 (741)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            89999874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.37  E-value=3.9e-10  Score=92.66  Aligned_cols=195  Identities=13%  Similarity=0.034  Sum_probs=127.0

Q ss_pred             ccCCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           80 HTKDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        80 h~~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      +.....+++|+|++. +++++..++.|..|+..+. .....   .+...+.+++++|++  ..+++...++.|.+||..+
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~---~~~~~~~~l~~~~dg--~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM---HPSHHQNGHCLNKQG--HLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE---SSCSSEEEEEECTTC--CEEEEETTTTEEEEECSTT
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE---CCCCCcceeeECCCC--cEEEEecCCCeEEEEcCCC
Confidence            344567899999998 7788888999999998765 22222   234557899999976  3555555568999999977


Q ss_pred             ceeEEEEcCC----CCCeeEEEECCCCCEEEEE----e-------------CCCeEEEEeCCCCceEEEecCCCeEEEEE
Q 048118          159 CKLRATLAGH----TGYVNTVAVSPDGSLCASG----G-------------KDGVILLWDLAEGKRLYSLDAGAVIHALC  217 (303)
Q Consensus       159 ~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~----~-------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  217 (303)
                      ++........    ...+..++++|+|+++++.    +             ..+.|..++.. ++.............++
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~  178 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLA  178 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEE
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEE
Confidence            7654332211    2346789999999988873    2             13466666655 44332233445678899


Q ss_pred             EcCCCeEEEEE-cCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeE
Q 048118          218 FSPNRYWLCAA-TEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI  295 (303)
Q Consensus       218 ~s~~~~~l~~~-~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v  295 (303)
                      |+|++..+++. .++.|++|++. .+++....... .                .....+..++++++|.+.++.  ++.|
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~----------------~~~~~p~~i~~d~~G~l~v~~--~~~v  239 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T----------------VEPGKTDGLRVDAGGLIWASA--GDGV  239 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C----------------CSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e----------------CCCCCCCeEEECCCCCEEEEc--CCeE
Confidence            99998766443 36789999986 44330111110 0                011122457889999866655  8889


Q ss_pred             EEEec
Q 048118          296 RVWGI  300 (303)
Q Consensus       296 ~~w~~  300 (303)
                      .+|+.
T Consensus       240 ~~~~~  244 (296)
T 3e5z_A          240 HVLTP  244 (296)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99976

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=3.4e-10  Score=93.56  Aligned_cols=229  Identities=10%  Similarity=0.089  Sum_probs=141.9

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      .......|+|++..++++...++.|..|+.. .+.      .                  .+..+...+..++++++|++
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------~------------------~~~~~~~~~~gl~~d~dG~l   99 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------D------------------VLLDATAFTNGNAVDAQQRL   99 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------E------------------EEEESCSCEEEEEECTTSCE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------E------------------EEeCCCCccceeeECCCCCE
Confidence            3456778888765578888888999999762 210      0                  11223456788999999987


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCC-CccceEEEEEcCCCCCCEEEE----EeC-------------CCcEEEEECC
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDA-HTEWVSCVRFSPNTLQPTIVS----ASW-------------DRTVKVWNLS  157 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~----~~~-------------dg~i~iwd~~  157 (303)
                      +++...++.|.+|+..+........... ....+..+.++|++  ...++    |..             .+.|..+|..
T Consensus       100 ~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          100 VHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             EEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            7665556789999875432211111111 11235678888876  34454    322             2457777776


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC------CeEEEEeCCCCceEE---Ee-c-CCCeEEEEEEcCCCeEEE
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD------GVILLWDLAEGKRLY---SL-D-AGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~---~~-~-~~~~v~~~~~s~~~~~l~  226 (303)
                      +++.....  .......++|+|+++.|..+...      +.|.+|++..+. +.   .+ . .......++++++|.+.+
T Consensus       178 ~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          178 GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred             CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence            66544333  33456789999999987776654      789999987543 21   11 1 122334578888888555


Q ss_pred             EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                      +. .+.|.+||.+ ++.+..+...                  .   .+.+++|+|+++.|..++.++..++
T Consensus       255 ~~-~~gv~~~~~~-g~~~~~~~~~------------------~---~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          255 SS-GTGVCVFDSD-GQLLGHIPTP------------------G---TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CC-SSEEEEECTT-SCEEEEEECS------------------S---CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             ec-CCcEEEECCC-CCEEEEEECC------------------C---ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            54 4569999984 5554443321                  0   1356889999998888887765544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=9.3e-09  Score=84.04  Aligned_cols=233  Identities=9%  Similarity=0.013  Sum_probs=148.9

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..+..+++++++ .++++...++.|..|+... .    ..            .+..      ......+..+++.+++.+
T Consensus        57 ~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~----~~------------~~~~------~~~~~~~~~i~~~~~g~l  112 (299)
T 2z2n_A           57 AKVMCLTISSDG-EVWFTENAANKIGRITKKG-I----IK------------EYTL------PNPDSAPYGITEGPNGDI  112 (299)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTS-C----EE------------EEEC------SSTTCCEEEEEECTTSCE
T ss_pred             CceeeEEECCCC-CEEEeCCCCCeEEEECCCC-c----EE------------EEeC------CCcCCCceeeEECCCCCE
Confidence            457788888754 5777777678888887541 1    00            0000      012346788999999988


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-EcCCCCCeeE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHTGYVNT  174 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~  174 (303)
                      +++...++.|.+|+..+... ... .......+..+++++++  ...++...++.|..||. +++.... .......+..
T Consensus       113 ~v~~~~~~~i~~~d~~g~~~-~~~-~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  187 (299)
T 2z2n_A          113 WFTEMNGNRIGRITDDGKIR-EYE-LPNKGSYPSFITLGSDN--ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG  187 (299)
T ss_dssp             EEEETTTTEEEEECTTCCEE-EEE-CSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             EEEecCCceEEEECCCCCEE-Eec-CCCCCCCCceEEEcCCC--CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence            88777788899998743222 121 11223457889999875  34555555788999998 6554432 2334456889


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceEEE-ec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeecc
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYS-LD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      ++++++++++++...++.|.+||. +++.... .. ....+..+++++++.+.++. .++.|..||.. +++ ..+... 
T Consensus       188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~-  263 (299)
T 2z2n_A          188 ITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII-EEYPIQ-  263 (299)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE-EEEECS-
T ss_pred             EEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce-EEEeCC-
Confidence            999999997777767889999998 5553321 22 23568899999998765555 57899999983 432 222110 


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                       .....+.++++ +++.+.++.+ .+.+..++.
T Consensus       264 -----------------~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          264 -----------------IKSAEPHGICF-DGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             -----------------SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred             -----------------CCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence                             11123466788 8887766655 556666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=7.3e-09  Score=85.17  Aligned_cols=225  Identities=12%  Similarity=0.096  Sum_probs=139.3

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..-.+..|++++..++++...++.|..|+.......      .                   ......+.+++++++|.+
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------~-------------------~~~~~~~~~i~~~~dG~l   67 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------R-------------------VTMDAPVSSVALRQSGGY   67 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------E-------------------EECSSCEEEEEEBTTSSE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------E-------------------EeCCCceEEEEECCCCCE
Confidence            345577888866677888888899999987543210      0                   012346788999999996


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCC--CCccceEEEEEcCCCCCCEEEEE-eC--------CCcEEEEECCC-ceeEE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGD--AHTEWVSCVRFSPNTLQPTIVSA-SW--------DRTVKVWNLSN-CKLRA  163 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~-~~--------dg~i~iwd~~~-~~~~~  163 (303)
                      +++ . ++.|.+||..+.....+....  .....+..++++|++.  ..++. ..        ...-.+|.+.. ++...
T Consensus        68 ~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~  143 (297)
T 3g4e_A           68 VAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK  143 (297)
T ss_dssp             EEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred             EEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence            554 3 567889997644332222211  1234578899999862  33332 21        12234444432 33322


Q ss_pred             EEcCCCCCeeEEEECCCCCEE-EEEeCCCeEEEEeC--CCCce-----EEEec-CCCeEEEEEEcCCCeEEEE-EcCCcE
Q 048118          164 TLAGHTGYVNTVAVSPDGSLC-ASGGKDGVILLWDL--AEGKR-----LYSLD-AGAVIHALCFSPNRYWLCA-ATEQSI  233 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~--~~~~~-----~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i  233 (303)
                       +.........++|+|+++.| ++.+.++.|.+||+  .++..     +..+. .......++++++|.+.++ ...+.|
T Consensus       144 -~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          144 -YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             -EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred             -EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence             22233456789999999876 45556889999987  44432     12222 1346778999999865544 456789


Q ss_pred             EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc-CCCCEEEEee
Q 048118          234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS-VDGSTLFSGY  290 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~gs  290 (303)
                      .+||.++++++..+...                    ...+++++|. |+++.|.+++
T Consensus       223 ~~~d~~tG~~~~~i~~p--------------------~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          223 IRLDPVTGKRLQTVKLP--------------------VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEECTTTCCEEEEEECS--------------------SSBEEEEEEESGGGCEEEEEE
T ss_pred             EEEcCCCceEEEEEECC--------------------CCCceEEEEeCCCCCEEEEEc
Confidence            99999888877655432                    1235778998 8887665444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=7.7e-09  Score=87.86  Aligned_cols=249  Identities=11%  Similarity=0.050  Sum_probs=147.1

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEec---------CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTAS---------RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF   77 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   77 (303)
                      ++.++.....+  .+.++|++....++..         .++.|.+||....+...               .+......+.
T Consensus        59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~---------------~i~~~~~~~~  121 (373)
T 2mad_H           59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---------------DIELPDAPRF  121 (373)
T ss_pred             EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE---------------EEECCCcccc
Confidence            34444443333  8889998764444432         36789999986432211               1110000011


Q ss_pred             ecccCCEEEEEEeeCCCEEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           78 VGHTKDVLSVAFSIDNRQIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        78 ~~h~~~i~~i~~~~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      . +......+.|+|+|++|+.+..  ++.|.++| ........ .... .   .++.+.|.+. ..+++.+.||.+.++|
T Consensus       122 ~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~-~i~~-~---~~~~~~~~~~-~~~~~~~~dg~~~~vd  193 (373)
T 2mad_H          122 D-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ-LLSS-P---TCYHIHPGAP-STFYLLCAQGGLAKTD  193 (373)
T ss_pred             c-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE-EcCC-C---ceEEEEeCCC-ceEEEEcCCCCEEEEE
Confidence            0 0123457899999999988874  47899999 65432211 0111 1   1344555543 3566778899999999


Q ss_pred             CCCceeEEEEc-----CCCCCe-eEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEecC-----------CCeEEEE
Q 048118          156 LSNCKLRATLA-----GHTGYV-NTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDA-----------GAVIHAL  216 (303)
Q Consensus       156 ~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~-----------~~~v~~~  216 (303)
                      . +++......     ....++ ....+.+++..++..+..+.+.+.|+..+.  .+..+..           ......+
T Consensus       194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~  272 (373)
T 2mad_H          194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence            9 766553221     111221 224556665554444578899999987543  2222211           1223447


Q ss_pred             EEcCCCeEEEEEc-----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-
Q 048118          217 CFSPNRYWLCAAT-----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-  284 (303)
Q Consensus       217 ~~s~~~~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-  284 (303)
                      +++|++..+.+..           .+.|.++|..+++.+..+....                     ....++|+|||+ 
T Consensus       273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---------------------~p~~i~~s~Dg~~  331 (373)
T 2mad_H          273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---------------------DVDAISVAQDGGP  331 (373)
T ss_pred             EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---------------------CcCeEEECCCCCe
Confidence            7889875544432           2579999999998887664321                     235689999999 


Q ss_pred             EEEEee-cCCeEEEEeccc
Q 048118          285 TLFSGY-TDGVIRVWGIGR  302 (303)
Q Consensus       285 ~l~~gs-~Dg~v~~w~~~~  302 (303)
                      .++++. .++.|.++|+..
T Consensus       332 ~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          332 DLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEEEcCCCCeEEEEECCC
Confidence            777877 599999999854

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.34  E-value=7.6e-10  Score=102.18  Aligned_cols=195  Identities=11%  Similarity=0.024  Sum_probs=122.7

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCC-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc----
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDR-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT----  150 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~----  150 (303)
                      |...+..++|+|+|++|+.+..++     .|++||+.+........   ....+..++|+|++  ..|+.++.++.    
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---~~~~~~~~~wspDg--~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---ERVKFSCMAWTHDG--KGMFYNAYPQQDGKS  197 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---EEECSCCEEECTTS--SEEEEEECCCCSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---cCcccceEEEEeCC--CEEEEEEECCccccc
Confidence            444678899999999988776543     89999987654332211   11124568999987  35666666655    


Q ss_pred             ------------EEEEECCCcee--EEEEc--CCCCCeeEEEECCCCCEEEEEeC-----CCeEEEEeCCC------Cc-
Q 048118          151 ------------VKVWNLSNCKL--RATLA--GHTGYVNTVAVSPDGSLCASGGK-----DGVILLWDLAE------GK-  202 (303)
Q Consensus       151 ------------i~iwd~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~------~~-  202 (303)
                                  |++|++.+++.  ...+.  .+...+..+.|+|+|++|+.++.     +..|.+||+.+      +. 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                        99999987652  12222  24456788999999999887764     57899999976      42 


Q ss_pred             eEEEec-CCCeEEEEEEcCCCeEEE-EEc----CCcEEEEeCCCCce--eeeeeeccccccccccCccceeeccccceeE
Q 048118          203 RLYSLD-AGAVIHALCFSPNRYWLC-AAT----EQSIKIWDLESKSI--VEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       203 ~~~~~~-~~~~v~~~~~s~~~~~l~-~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                      .+..+. ....+.. .|+|++..++ .+.    ...|++||+.+++.  ...+..                  ......+
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~------------------~~~~~~~  338 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP------------------EHEKDVL  338 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC------------------CCSSCEE
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC------------------CCCCCeE
Confidence            233332 2222333 4777765444 333    23699999876531  111110                  0011134


Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEE
Q 048118          275 TSLNWSVDGSTLFSGYTDGVIRVW  298 (303)
Q Consensus       275 ~~~~~sp~~~~l~~gs~Dg~v~~w  298 (303)
                      ..++|++++.+++++..|+..++|
T Consensus       339 ~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          339 EWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEE
T ss_pred             EEEEEEcCCEEEEEEEECCEEEEE
Confidence            567888878888899999965554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.31  E-value=4.2e-09  Score=90.64  Aligned_cols=250  Identities=10%  Similarity=0.086  Sum_probs=149.8

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      ....+++++++ +++++...++.|+.|+.......                .+.        ....... ++|++++..+
T Consensus       132 ~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~----------------~~~--------~~~~~~~-ia~~~~g~~l  185 (409)
T 3hrp_A          132 YMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVT----------------TVH--------PGFKGGK-PAVTKDKQRV  185 (409)
T ss_dssp             CEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEE----------------EEE--------ETCCBCB-CEECTTSSEE
T ss_pred             CceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEE----------------Eee--------ccCCCCc-eeEecCCCcE
Confidence            46788898765 57788777889999987542211                000        0011223 8899999988


Q ss_pred             EEEeCCC--cEEEEecCCceee-eeecCCC-CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE----EcCC
Q 048118           97 VSASRDR--TIKLWNTLGECKY-TIQEGDA-HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT----LAGH  168 (303)
Q Consensus        97 ~t~~~d~--~i~vw~~~~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~----~~~~  168 (303)
                      +.+..++  .|.+++....... ....... ....+.+++++|+.  ..+..+..++.|+.||..++.....    ..++
T Consensus       186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~--g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~  263 (409)
T 3hrp_A          186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETE--EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS  263 (409)
T ss_dssp             EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTS--SEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred             EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCC--CeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence            8888766  6777776432211 1101011 22345778899843  2455567788999999977653322    2222


Q ss_pred             CCCe--eEEEECCC-CCEEEEEeCCCeEEEEeCCCCceEEEecC--------------CCeEEEEEEcCCCeEEEEE--c
Q 048118          169 TGYV--NTVAVSPD-GSLCASGGKDGVILLWDLAEGKRLYSLDA--------------GAVIHALCFSPNRYWLCAA--T  229 (303)
Q Consensus       169 ~~~i--~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~--~  229 (303)
                      ...-  ..++|+|+ +.++++-...++|+.|+.........-..              -.....++++|++.++++.  .
T Consensus       264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            2222  38999995 55666666789999999764321111010              1347789999998755544  5


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ++.|+.|++.++.+.. +.-........ ...    ...........++++|++.++++-..+++|+.+.+
T Consensus       344 ~~~I~~~~~~~G~v~~-~~g~~~~~g~~-~g~----~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          344 GYCLRKLDILDGYVST-VAGQVDVASQI-DGT----PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCEEEEEETTTTEEEE-EEECTTCBSCC-CBS----TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEEECCCCEEEE-EeCCCCCCCcC-CCC----hhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            6789999987775432 11110000000 000    00111234678999999888888888999998875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.30  E-value=4.6e-08  Score=79.91  Aligned_cols=235  Identities=10%  Similarity=0.024  Sum_probs=152.8

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..+.++.+++++ .++++...++.|.+|+.. ....                .+..      ..+...+..+++.+++.+
T Consensus        20 ~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~----------------~~~~------~~~~~~~~~i~~~~~g~l   75 (300)
T 2qc5_A           20 SGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIK----------------EFEV------PTPDAKVMCLIVSSLGDI   75 (300)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----------------EEEC------SSTTCCEEEEEECTTSCE
T ss_pred             CCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceE----------------EEEC------CCCCCcceeEEECCCCCE
Confidence            467888888764 577777778899999865 2110                0000      012346788999999988


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE-EEcCCCCCeeE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA-TLAGHTGYVNT  174 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~  174 (303)
                      +++...++.|..++..+... .... ......+.++++.+++  ..+++...++.|..+|.. ++... .+......+..
T Consensus        76 ~v~~~~~~~v~~~d~~g~~~-~~~~-~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           76 WFTENGANKIGKLSKKGGFT-EYPL-PQPDSGPYGITEGLNG--DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             EEEETTTTEEEEECTTSCEE-EEEC-SSTTCCEEEEEECSTT--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             EEEecCCCeEEEECCCCCeE-EecC-CCCCCCCccceECCCC--CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence            77776678899998764322 2211 1122457889998865  355555557889999987 54432 23333457889


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceEE-Eec-CCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecc
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLY-SLD-AGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      +++.++++++++...++.|..+|. +++... ... ....+..+++++++.+.++.. .+.|.+||. +++... ...  
T Consensus       151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~--  225 (300)
T 2qc5_A          151 ITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI--  225 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC--
T ss_pred             EEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC--
Confidence            999999997776666889999998 444332 121 234678899999887655554 567999998 443322 110  


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                      ......+..+++.++|.+.++...++.|..|+.
T Consensus       226 ----------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          226 ----------------PTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             ----------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             ----------------CCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence                            011123467888999887777667788888875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.30  E-value=8.9e-10  Score=89.03  Aligned_cols=194  Identities=8%  Similarity=-0.054  Sum_probs=127.7

Q ss_pred             CEEEEEEeeCCCEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           83 DVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      .+.++++++++.+++ +...++.|.+|+..+.......  ......+.++++++++  ..+++.. ++.|..||..+...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g--~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDGAG--TVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC--CCSCCSCCCEEECTTC--CEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCCcceeEECCCC--CEEEEcC-CCEEEEEeCCCceE
Confidence            677899999998777 5467889999986443221111  1222346778898875  3444444 88999999876544


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLE  239 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~  239 (303)
                      ..........+..++++|+++++++...++.|.+|+..+........ ....+..+++++++.++++. .++.|.+||..
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  179 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  179 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence            32212233568899999999988777778999999876544332221 22356788999988755554 46799999987


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .........                    .....+..+++.++|.++++...++.|.+|+..
T Consensus       180 ~~~~~~~~~--------------------~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          180 SNNQVVLPF--------------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             TCCEEECCC--------------------SSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             CCceEeecc--------------------cCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            654322100                    001234678899999877777788999999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=8e-10  Score=89.98  Aligned_cols=180  Identities=13%  Similarity=0.095  Sum_probs=127.9

Q ss_pred             CCCEEEEEeCCCcEEEEec-CCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCC-
Q 048118           92 DNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHT-  169 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-  169 (303)
                      .+++|++++.|+.|.+||. .++..+.+....  ...+.++.+.|++  ..++  +.++.|+.||. +++.+.++..+. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG--~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~   76 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAG--EILF--SYSKGAKMITR-DGRELWNIAAPAG   76 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTS--CEEE--ECBSEEEEECT-TSCEEEEEECCTT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCC--CEEE--eCCCCEEEECC-CCCEEEEEcCCCC
Confidence            4568899999999999998 455444443211  1346788899986  3455  45788999998 788887777643 


Q ss_pred             CCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCCceEEEecCC-------CeEEEEEEcCCCeEEEEE-cCCcEEEEeCCC
Q 048118          170 GYVNTVAVSPDGSLCASGGK-DGVILLWDLAEGKRLYSLDAG-------AVIHALCFSPNRYWLCAA-TEQSIKIWDLES  240 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  240 (303)
                      ..+.++.+.|+|+.+++.+. ++++..+|. +++.+..+...       ...+.+++.+++.++++. .++.|.+||.+ 
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            46888999999999998887 788888885 67766665321       123445678888777655 57899999998 


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++++.++....                     ...++...+++.++++++.+++|..+|..
T Consensus       155 G~~~w~~~~~~---------------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          155 GQLLNSVKLSG---------------------TPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             SCEEEEEECSS---------------------CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             CCEEEEEECCC---------------------CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            88877654310                     01224556888888888888888887754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.28  E-value=3.8e-08  Score=82.04  Aligned_cols=221  Identities=14%  Similarity=0.048  Sum_probs=134.6

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      .....|+|++..++++...++.|..|+.......      .          +         .....+.++.++++|.+++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~------~----------~---------~~~~~v~~i~~~~dg~l~v  105 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT------V----------H---------ALPFMGSALAKISDSKQLI  105 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE------E----------E---------ECSSCEEEEEEEETTEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE------E----------E---------ECCCcceEEEEeCCCeEEE
Confidence            3466788876677788777888988887532110      0          0         1124678899999998777


Q ss_pred             EEeCCCcEEEEecCCceeeeeecCC--CCccceEEEEEcCCCCCCEEEEEeC------CCcEEEEECCCceeEEEEcCCC
Q 048118           98 SASRDRTIKLWNTLGECKYTIQEGD--AHTEWVSCVRFSPNTLQPTIVSASW------DRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~------dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      +. . ..|.+||..+.....+....  .....+..++++|++.  .+++...      .+.|..++  +++... +..+.
T Consensus       106 ~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~  178 (326)
T 2ghs_A          106 AS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI  178 (326)
T ss_dssp             EE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE
T ss_pred             EE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC
Confidence            54 4 34888987543322222111  1124578899999862  3333321      24566666  444332 22223


Q ss_pred             CCeeEEEECCCCCEEEEE-eCCCeEEEEeCC--CC-c-----eEEEec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeC
Q 048118          170 GYVNTVAVSPDGSLCASG-GKDGVILLWDLA--EG-K-----RLYSLD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDL  238 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~--~~-~-----~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~  238 (303)
                      .....++|+|+++.+..+ +.++.|.+||+.  ++ +     .+..+. .......+++++++.+.++. .++.|.+||.
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            456789999999876544 557899999985  55 2     122222 23456788999988655444 4678999998


Q ss_pred             CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc-CCCCEEEEeec
Q 048118          239 ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS-VDGSTLFSGYT  291 (303)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~gs~  291 (303)
                       +++.+..+...                    ...+.+++|+ |++..|.+++.
T Consensus       259 -~g~~~~~i~~~--------------------~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          259 -DGNHIARYEVP--------------------GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             -TCCEEEEEECS--------------------CSBEEEEEEESTTSCEEEEEEB
T ss_pred             -CCCEEEEEECC--------------------CCCcEEEEEecCCCCEEEEEec
Confidence             45554433221                    1235778998 88876654443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.23  E-value=7e-09  Score=92.76  Aligned_cols=185  Identities=11%  Similarity=0.011  Sum_probs=128.8

Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC--CceeEEEEcC
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS--NCKLRATLAG  167 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~--~~~~~~~~~~  167 (303)
                      +.+.++++...++.|.++|..+.... .+..    ...+..+.++|++  .++++++.++.|.+||+.  +.+...++..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            44556777888999999998654322 2221    1235689999987  367777899999999995  6777777765


Q ss_pred             CCCCeeEEEEC----CCCCEEEEEeC-CCeEEEEeCCCCceEEEecCC------------CeEEEEEEcCCCeEE--EEE
Q 048118          168 HTGYVNTVAVS----PDGSLCASGGK-DGVILLWDLAEGKRLYSLDAG------------AVIHALCFSPNRYWL--CAA  228 (303)
Q Consensus       168 ~~~~i~~~~~~----~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l--~~~  228 (303)
                      .. ....++|+    |+|++++++.. ++++.++|..+.+.+..+...            ..+..+..++++..+  ...
T Consensus       239 G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          239 GS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             CS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence            33 35689999    69998877765 699999999998888776431            256778888875433  333


Q ss_pred             cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEecc
Q 048118          229 TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~  301 (303)
                      ..|.|.++|....+.+....+.                   ...+...+.|+|+++++++++ .++.|.++|+.
T Consensus       318 ~~g~v~~vd~~~~~~~~v~~i~-------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKTTEIS-------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTK  372 (567)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEE-------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             CCCeEEEEecCCCccceeeeee-------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence            5689999998765432211110                   011234578999999876654 68999999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.22  E-value=1.3e-07  Score=77.22  Aligned_cols=234  Identities=12%  Similarity=0.057  Sum_probs=146.6

Q ss_pred             cceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCE
Q 048118           16 DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQ   95 (303)
Q Consensus        16 ~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~   95 (303)
                      ..+..+.+++++ .++++...++.|..|+.. ....                .+..      ......+..+++.+++.+
T Consensus        62 ~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~----------------~~~~------~~~~~~~~~i~~~~~g~l  117 (300)
T 2qc5_A           62 AKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFT----------------EYPL------PQPDSGPYGITEGLNGDI  117 (300)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----------------EEEC------SSTTCCEEEEEECSTTCE
T ss_pred             CcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeE----------------EecC------CCCCCCCccceECCCCCE
Confidence            456777777654 566666667778888754 2110                0000      011245788999999988


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE-EEcCCCCCeeE
Q 048118           96 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA-TLAGHTGYVNT  174 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~  174 (303)
                      +++...++.|..++..+... ... .......+.++++.+++  ...++...++.|..+|. +++... ....+...+..
T Consensus       118 ~v~~~~~~~i~~~~~~g~~~-~~~-~~~~~~~~~~i~~d~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  192 (300)
T 2qc5_A          118 WFTQLNGDRIGKLTADGTIY-EYD-LPNKGSYPAFITLGSDN--ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVG  192 (300)
T ss_dssp             EEEETTTTEEEEECTTSCEE-EEE-CSSTTCCEEEEEECTTS--SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             EEEccCCCeEEEECCCCCEE-Ecc-CCCCCCCceeEEECCCC--CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcce
Confidence            88777678899998764322 121 11123457889998875  34555555788999998 444433 22233456889


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceEEE-ec-CCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeecc
Q 048118          175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYS-LD-AGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       175 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      ++++++++++++....+.|.++|. +++.... .. ....+.++++++++.+.++. .++.|..||. ++++. .+... 
T Consensus       193 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-  268 (300)
T 2qc5_A          193 ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ-  268 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC-
T ss_pred             EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC-
Confidence            999999988777767788999998 4443322 22 23567889999998755554 3689999998 34332 12110 


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                                       .....+.++...++|.+.++.. . .|..++..
T Consensus       269 -----------------~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          269 -----------------TENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             -----------------STTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             -----------------ccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence                             0011235578889988666665 5 77777653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.18  E-value=1.1e-08  Score=94.85  Aligned_cols=194  Identities=14%  Similarity=0.077  Sum_probs=114.7

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc----
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT----  150 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~----  150 (303)
                      |...+..++|+|+|++|+.+..+     ..|++||+.+.......   .....+..++|+|+ .  .++.+..++.    
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---~~~~~~~~~~wspD-~--~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE---LKWVKFSGLAWLGN-D--ALLYSRFAEPKEGQ  234 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE---EEEEESCCCEESTT-S--EEEEEECCCC----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc---CCCceeccEEEECC-C--EEEEEEecCccccc
Confidence            33467789999999998877654     35999998664332211   01111246789997 3  4555555443    


Q ss_pred             ----------EEEEECCCcee--EEEEc--CCCCCeeEEEECCCCCEEEEEeCCC-----eEEEEeCCCC--ceEEEec-
Q 048118          151 ----------VKVWNLSNCKL--RATLA--GHTGYVNTVAVSPDGSLCASGGKDG-----VILLWDLAEG--KRLYSLD-  208 (303)
Q Consensus       151 ----------i~iwd~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~--~~~~~~~-  208 (303)
                                |++|++.+++.  ...+.  .+...+..+.|+|+|++|+..+.++     .|.+||+.++  +....+. 
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                      88999876542  22222  2333588999999999988777544     8999999876  3123332 


Q ss_pred             CCCeEEEEEEcCCCeEEE-EEc----CCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118          209 AGAVIHALCFSPNRYWLC-AAT----EQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD  282 (303)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~-~~~----~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  282 (303)
                      ......... +|++..++ .+.    ++.|++||+.++. ....+..                   .....+..++|+ +
T Consensus       315 ~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------------------~~~~~l~~~~~~-~  373 (741)
T 1yr2_A          315 DLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------------------ESKDNLESVGIA-G  373 (741)
T ss_dssp             SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------------------CCSSEEEEEEEE-B
T ss_pred             CCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------------------CCCCeEEEEEEE-C
Confidence            222223332 36665444 333    3459999987642 1111110                   001123345666 5


Q ss_pred             CCEEEEeecCCeEEEEec
Q 048118          283 GSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       283 ~~~l~~gs~Dg~v~~w~~  300 (303)
                      +.++++...||..++|.+
T Consensus       374 ~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          374 NRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             TEEEEEEEETTEEEEEEE
T ss_pred             CEEEEEEEECCEEEEEEE
Confidence            567788888988888754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.17  E-value=3.2e-08  Score=81.59  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=125.8

Q ss_pred             CCEEEEEEeeCCCEEEE-------EeCCCcEEEEecCCceeeeeec--CCCCccceEEEEEcCC-CCCCEEEEEeCCCcE
Q 048118           82 KDVLSVAFSIDNRQIVS-------ASRDRTIKLWNTLGECKYTIQE--GDAHTEWVSCVRFSPN-TLQPTIVSASWDRTV  151 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t-------~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~~~~~~~~~dg~i  151 (303)
                      ..+.+++|++++.++++       ...++.|.+|+...........  ...+...+.++.++++ +   .+..++..+.|
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g---~l~v~~~~~~l   94 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN---QLFVADMRLGL   94 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS---EEEEEETTTEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC---cEEEEECCCCE
Confidence            34568899999988877       5778899999964432222211  0113345788999887 4   34445555578


Q ss_pred             EEEECCCceeEEE-EcC----CCCCeeEEEECCCCCEEEEEeCC---------------CeEEEEeCCCCceEEEecCCC
Q 048118          152 KVWNLSNCKLRAT-LAG----HTGYVNTVAVSPDGSLCASGGKD---------------GVILLWDLAEGKRLYSLDAGA  211 (303)
Q Consensus       152 ~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~v~iwd~~~~~~~~~~~~~~  211 (303)
                      .+||.. ++.... ...    ....+..++++|+|+++++...+               +.|..+|.. ++.........
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ  172 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence            899987 654432 211    12357899999999888777655               577778765 44332222223


Q ss_pred             eEEEEEEc----CCCeEE-EEE-cCCcEEEEeCC-CCceeeeeeeccccccccccCccceeeccccc-eeEEEEEEcCCC
Q 048118          212 VIHALCFS----PNRYWL-CAA-TEQSIKIWDLE-SKSIVEDLKVDLKTEAEKSEATTATTTIKKKN-IYCTSLNWSVDG  283 (303)
Q Consensus       212 ~v~~~~~s----~~~~~l-~~~-~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~  283 (303)
                      ....++++    |++..+ ++. .++.|++||.+ .+++.. ....              ..+.... .....++++++|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~-~~~~--------------~~~~~~~~~~p~~i~~d~~G  237 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KKVW--------------GHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EEEE--------------EECCCCSSCEEEEEEEBTTC
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-ceEE--------------EECCCCCCCCCCceEECCCC
Confidence            45788999    998543 333 46889999976 333211 1000              0011111 234668899999


Q ss_pred             CEEEEeecCCeEEEEecc
Q 048118          284 STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~~~  301 (303)
                      .++++...++.|.+||..
T Consensus       238 ~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          238 NLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             CEEEEEETTTEEEEECTT
T ss_pred             CEEEEEcCCCEEEEEcCC
Confidence            988888889999999874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.15  E-value=2.6e-08  Score=84.15  Aligned_cols=250  Identities=13%  Similarity=0.094  Sum_probs=146.7

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEec---------CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTAS---------RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   76 (303)
                      .+++++.....+  .+.++|++...+++.+         .++.|.+||....+..               ..+.+.+..+
T Consensus        70 ~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------~~I~v~~g~r  132 (386)
T 3sjl_D           70 RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------ADIELPDAPR  132 (386)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------EEEEETTCCC
T ss_pred             eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------EEEECCCccc
Confidence            344444443333  4889998765555542         3678999998754321               1111111000


Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      . ........+.++|+|++++.+..  ++.|.++|..............      |....|.+. ..+++.+.||.+.+.
T Consensus       133 ~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------~~~~~P~g~-~~~~~~~~DG~~~~v  204 (386)
T 3sjl_D          133 F-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------CYHIFPTAP-DTFFMHCRDGSLAKV  204 (386)
T ss_dssp             C-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEET-TEEEEEETTSCEEEE
T ss_pred             c-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC------cceeecCCC-ceeEEECCCCCEEEE
Confidence            0 00112346889999998887764  6899999986653322211111      111224332 356688889999999


Q ss_pred             ECCC-ceeEEEEcCCC----CCee-EEEE-CCCCCEEEEEeCCCeEEEEeCCCCc--eEEEec--------C---CCeEE
Q 048118          155 NLSN-CKLRATLAGHT----GYVN-TVAV-SPDGSLCASGGKDGVILLWDLAEGK--RLYSLD--------A---GAVIH  214 (303)
Q Consensus       155 d~~~-~~~~~~~~~~~----~~i~-~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~--------~---~~~v~  214 (303)
                      ++.+ ++.......+.    .++. ...| .++|+++. .+.+|+|.+.|+.++.  .+..+.        .   .....
T Consensus       205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q  283 (386)
T 3sjl_D          205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ  283 (386)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred             ECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence            9876 55432221111    2222 2355 36775544 5568999999997654  222221        0   01223


Q ss_pred             EEEEcCCCeEEEEEc-----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          215 ALCFSPNRYWLCAAT-----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       215 ~~~~s~~~~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                      .+++++++..+.+..           .+.|.++|+++++.++.+.+.                     ..+++++++||+
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---------------------~~~~~lavs~D~  342 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---------------------HEIDSINVSQDE  342 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------------------EEECEEEECSSS
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---------------------CCcceEEECCCC
Confidence            467788875554432           257999999999998876542                     124579999999


Q ss_pred             C-EEEEe-ecCCeEEEEeccc
Q 048118          284 S-TLFSG-YTDGVIRVWGIGR  302 (303)
Q Consensus       284 ~-~l~~g-s~Dg~v~~w~~~~  302 (303)
                      + +|+++ ..++.|.++|...
T Consensus       343 ~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          343 KPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             SCEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEEcCCCCeEEEEECCC
Confidence            6 66664 5599999999854

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.15  E-value=1.1e-08  Score=94.13  Aligned_cols=238  Identities=13%  Similarity=0.122  Sum_probs=136.3

Q ss_pred             ccccceeeeecCCCCCcEEE-E----ecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           13 AHTDMVTAIATPIDNSDMIV-T----ASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        13 ~h~~~v~~v~~~~~~~~~~~-t----~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      +|...+..++|+|++. ++| +    |+...+|++||+..++....    .                  +..  .....+
T Consensus       126 ~~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----~------------------~~~--~k~~~~  180 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLET----P------------------LKD--VKFSGI  180 (693)
T ss_dssp             TSCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEE----E------------------EEE--EESCCC
T ss_pred             CCcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcc----c------------------cCC--ceeccE
Confidence            3555678889999865 555 3    33335799999876432100    0                  000  001356


Q ss_pred             EEeeCCCEEEEEeCCCc-------------EEEEecCCcee--eeeecCCC-CccceEEEEEcCCCCCCEEEEEeC---C
Q 048118           88 AFSIDNRQIVSASRDRT-------------IKLWNTLGECK--YTIQEGDA-HTEWVSCVRFSPNTLQPTIVSASW---D  148 (303)
Q Consensus        88 ~~~~~~~~l~t~~~d~~-------------i~vw~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~---d  148 (303)
                      +|+ |++.|+.++.+..             |.+|++.....  ..+..... +......+.|+|++. ..+++...   .
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~  258 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR-FLLISAANSTSG  258 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC-EEEEEEESSSSC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC-EEEEEEccCCCC
Confidence            899 9998888887743             88888754321  12222222 334467889999874 23344332   3


Q ss_pred             CcEEEEECCCce-eEEEEcCCCCCeeEEEECCCCCEEE-EEeCC---CeEEEEeCCCCce--EEEe-cCCCeEEEEEEcC
Q 048118          149 RTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCA-SGGKD---GVILLWDLAEGKR--LYSL-DAGAVIHALCFSP  220 (303)
Q Consensus       149 g~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~s~  220 (303)
                      ..|+++|+.+.. ....+..+....... +++++..|+ ++..+   +.|..+|+.++..  ...+ .....+.  .|++
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~  335 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS  335 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence            589999987653 334455555555554 566666554 44333   6899999987643  1222 2222222  6777


Q ss_pred             CCeEEEEE--cCC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC----
Q 048118          221 NRYWLCAA--TEQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD----  292 (303)
Q Consensus       221 ~~~~l~~~--~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D----  292 (303)
                      ++..|+..  .++  .|++||+..+. ...+...                   ....+..+.++|+++.|+....+    
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p-------------------~~~~~~~~~~~~d~~~l~~~~ss~~tP  395 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEGKR-VREVALP-------------------GLGSVSGFNGKHDDPALYFGFENYAQP  395 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTSCE-EEEECCS-------------------SSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred             ECCEEEEEEEECCeeEEEEEECCCCe-eEEeecC-------------------CCceEEeeecCCCCCEEEEEecCCCCC
Confidence            76544433  343  68999987543 2222210                   11123456677888766655555    


Q ss_pred             CeEEEEec
Q 048118          293 GVIRVWGI  300 (303)
Q Consensus       293 g~v~~w~~  300 (303)
                      +.+..||+
T Consensus       396 ~~l~~~d~  403 (693)
T 3iuj_A          396 PTLYRFEP  403 (693)
T ss_dssp             CEEEEECT
T ss_pred             CEEEEEEC
Confidence            78888876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.13  E-value=9.6e-09  Score=88.20  Aligned_cols=252  Identities=12%  Similarity=0.092  Sum_probs=151.6

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEec---------CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTAS---------RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   76 (303)
                      .+++++..-..+  .+.++|++...+++..         .++.|.++|........               .+.+...++
T Consensus       110 ~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~---------------~I~v~g~~r  172 (426)
T 3c75_H          110 RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA---------------DIELPDAPR  172 (426)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE---------------EEEETTCCC
T ss_pred             EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE---------------EEECCCccc
Confidence            444455444344  7889998766555543         46789999887543211               111110000


Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      +. .......+.++|+|++++.+..  ++.|.+.|..............      +....|++. ..+++.+.||.+.+.
T Consensus       173 ~~-~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~-~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          173 FL-VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASP-TVFYMNCRDGSLARV  244 (426)
T ss_dssp             CC-BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEET-TEEEEEETTSSEEEE
T ss_pred             cc-cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCC-cEEEEEcCCCCEEEE
Confidence            00 0112345789999999988764  5789999986543321111111      122334332 356777888998888


Q ss_pred             ECCCceeEEEE----cCCCCCe-eEEEECCCCCEEEEEeCCCeEEEEeCCCCceE--EEecC--------C---CeEEEE
Q 048118          155 NLSNCKLRATL----AGHTGYV-NTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDA--------G---AVIHAL  216 (303)
Q Consensus       155 d~~~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~--------~---~~v~~~  216 (303)
                      +..+++.....    .-...++ ..+.+.+++..++..+..+++.+.|+..+...  ..+..        .   .....+
T Consensus       245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v  324 (426)
T 3c75_H          245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT  324 (426)
T ss_dssp             ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred             ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence            88655544221    1111222 23567898887777778899999998654421  11110        0   011126


Q ss_pred             EEcCCCeEEEEEc-----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-
Q 048118          217 CFSPNRYWLCAAT-----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-  284 (303)
Q Consensus       217 ~~s~~~~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-  284 (303)
                      +++|++..+.+..           .+.|.++|..+.+.+..+.+.                     .....+.|+||++ 
T Consensus       325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---------------------~~P~gia~spDg~~  383 (426)
T 3c75_H          325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---------------------HEIDSINVSQDAEP  383 (426)
T ss_dssp             EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------------------EEECEEEECCSSSC
T ss_pred             EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---------------------CCcCeEEEccCCCE
Confidence            7899865443332           347999999999988876542                     1246789999998 


Q ss_pred             EEEEee-cCCeEEEEecccC
Q 048118          285 TLFSGY-TDGVIRVWGIGRY  303 (303)
Q Consensus       285 ~l~~gs-~Dg~v~~w~~~~~  303 (303)
                      ++++.. .++.|.++|+..+
T Consensus       384 ~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEcCCCCeEEEEECCCC
Confidence            888887 5999999998653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.11  E-value=8e-08  Score=82.66  Aligned_cols=206  Identities=11%  Similarity=0.043  Sum_probs=127.4

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC--cEEEEECCCc
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR--TVKVWNLSNC  159 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg--~i~iwd~~~~  159 (303)
                      ..+..++|++++.++++...++.|++||..+.....+...  . .... ++|+|++  ..++++..++  .|..++...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~-~~~~-ia~~~~g--~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--F-KGGK-PAVTKDK--QRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--C-CBCB-CEECTTS--SEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--C-CCCc-eeEecCC--CcEEEEecCCCceEEEEEcCCC
Confidence            4688999999999888777789999999875444333222  1 1123 8899876  3566666655  7888887654


Q ss_pred             eeEEEE----cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE----ecCCCe---EEEEEEcCC-CeEEEE
Q 048118          160 KLRATL----AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS----LDAGAV---IHALCFSPN-RYWLCA  227 (303)
Q Consensus       160 ~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~~~---v~~~~~s~~-~~~l~~  227 (303)
                      .....+    ......+.+++++|++..|.++..+++|+.||..++.....    ......   ...++|+|+ +.++++
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            433333    21345678899999555555566788999999987653221    111111   228999994 655554


Q ss_pred             E-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEec
Q 048118          228 A-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGI  300 (303)
Q Consensus       228 ~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~  300 (303)
                      . ..+.|+.|+.... . ..+.-.....   .....  ............++++|+|.++++-+ .+++|+.|++
T Consensus       285 d~~~~~I~~~~~~g~-~-~~~~g~~~~~---g~~dg--~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE-C-EWFCGSATQK---TVQDG--LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             ETTTTEEEEECTTCC-E-EEEEECTTCC---SCBCE--EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             eCCCCEEEEEecCCC-E-EEEEeCCCCC---CcCCC--cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            4 4678999997643 1 1111000000   00000  00001122357899999999888877 8999999984

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=7.6e-08  Score=80.78  Aligned_cols=249  Identities=12%  Similarity=0.070  Sum_probs=144.2

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEec--CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccC
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTAS--RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTK   82 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~   82 (303)
                      |+++..+.   ..+..|++++++ +++++..  .++.++||.+. ..+     ...++...           .....|..
T Consensus         9 ~~~v~~~~---~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~-~g~-----~~~~p~~~-----------~~~~~~~~   67 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELT-QDG-----LIPFPPQS-----------GNAIITFD   67 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEE-TTE-----EEESCCCC-----------SSCCCCCS
T ss_pred             eEEEEEcC---CCcceEEECCCC-CEEEEeCCCCCCceEEEEEC-CCC-----eecCCCcc-----------cCccccee
Confidence            44444433   468899999865 6788863  23447777765 211     11111100           01123556


Q ss_pred             CEEEEEEeeCCCEEEEEeC-----CCcEEEEecCCce-eeeeecC---CCCccceEEEEEcCCCCCCEEEEEe---CCCc
Q 048118           83 DVLSVAFSIDNRQIVSASR-----DRTIKLWNTLGEC-KYTIQEG---DAHTEWVSCVRFSPNTLQPTIVSAS---WDRT  150 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~-----d~~i~vw~~~~~~-~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~---~dg~  150 (303)
                      .+..+++++++.++++-..     ++.|.+||..+.. ...+...   ..+......++++|+.. ...++-.   .++.
T Consensus        68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAA  146 (343)
T ss_dssp             CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCE
T ss_pred             EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCe
Confidence            8999999999876665433     5789999986443 2222211   11223457888987532 2344444   6789


Q ss_pred             EEEEECCCceeEEEEcCCC-----------------------------CCeeEEEECCCCCEEEEEeCCC-eEEEEeCC-
Q 048118          151 VKVWNLSNCKLRATLAGHT-----------------------------GYVNTVAVSPDGSLCASGGKDG-VILLWDLA-  199 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~-----------------------------~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~-  199 (303)
                      |.+||+.+++....+.+|.                             ..+..++++|+++.|.++..++ .+..++.. 
T Consensus       147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~  226 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD  226 (343)
T ss_dssp             EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred             EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence            9999998777655543321                             1357899999999888777655 55555431 


Q ss_pred             --CCc--------eEEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeecc
Q 048118          200 --EGK--------RLYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIK  268 (303)
Q Consensus       200 --~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (303)
                        .+.        .+...........+++++++.+.++. .++.|.+||.+++++......                   
T Consensus       227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-------------------  287 (343)
T 2qe8_A          227 LSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-------------------  287 (343)
T ss_dssp             HTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-------------------
T ss_pred             hcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-------------------
Confidence              110        00111111234458899988655554 578999999855543211110                   


Q ss_pred             ccceeEEEEEEcCCCCEEEEeecCCe
Q 048118          269 KKNIYCTSLNWSVDGSTLFSGYTDGV  294 (303)
Q Consensus       269 ~~~~~~~~~~~sp~~~~l~~gs~Dg~  294 (303)
                      ....+..++++.+++.++++.+..+.
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             CceecCCeeEECCCCcEEEEeCcccc
Confidence            01234577899999888777765443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.05  E-value=4.6e-07  Score=74.36  Aligned_cols=194  Identities=12%  Similarity=0.081  Sum_probs=118.5

Q ss_pred             EEEEEEeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           84 VLSVAFSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        84 i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      .-+..|+++ +.++.+...++.|..|+..+.......    ....+.+++++|++.   ++.+. ++.|.+||..+++..
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~----~~~~~~~i~~~~dG~---l~v~~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT----MDAPVSSVALRQSGG---YVATI-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE----CSSCEEEEEEBTTSS---EEEEE-TTEEEEEETTTTEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe----CCCceEEEEECCCCC---EEEEE-CCeEEEEECCCCcEE
Confidence            346788885 455666667889999998654332221    134588999999862   34344 568999999877654


Q ss_pred             EEEcC----CCCCeeEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE
Q 048118          163 ATLAG----HTGYVNTVAVSPDGSLCASGGK-----------DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA  227 (303)
Q Consensus       163 ~~~~~----~~~~i~~~~~~~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (303)
                      .....    ....+..++++|+|+++++...           .+.|..++.. ++...........+.++|+|++..+..
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEE
Confidence            32221    1234788999999997765432           1344444432 332222222345678999999865433


Q ss_pred             --EcCCcEEEEeC--CCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          228 --ATEQSIKIWDL--ESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       228 --~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                        ..++.|++|++  .++.+.. .+..              ..+.........+++.++|.+.++....+.|..||..
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~-~~~~--------------~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISN-RRSV--------------YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEE-EEEE--------------EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             ecCCCCcEEEEeccCCCCcccC-cEEE--------------EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence              33688999987  4444321 1100              0011112244678889999888877788889999863

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.03  E-value=3.5e-07  Score=76.13  Aligned_cols=192  Identities=13%  Similarity=0.030  Sum_probs=115.6

Q ss_pred             EEEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           84 VLSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        84 i~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      ..+..|+|++ .++++...++.|..|+..+.......    ....+.++.++|++   .++.++.+ -|.+||..+++..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~----~~~~v~~i~~~~dg---~l~v~~~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA----LPFMGSALAKISDS---KQLIASDD-GLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE----CSSCEEEEEEEETT---EEEEEETT-EEEEEETTTCCEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE----CCCcceEEEEeCCC---eEEEEECC-CEEEEECCCCcEE
Confidence            3567899974 45666667889999998654332222    12458889999875   24444444 4899998877654


Q ss_pred             EEEcC---C-CCCeeEEEECCCCCEEEEEeC------CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE--cC
Q 048118          163 ATLAG---H-TGYVNTVAVSPDGSLCASGGK------DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA--TE  230 (303)
Q Consensus       163 ~~~~~---~-~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~  230 (303)
                      .....   . ...+..+.++|+|+++++...      .+.|..++  +++...........+.++|+|++..+..+  .+
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            32221   1 235789999999997765542      24566666  44432211222346789999998655433  36


Q ss_pred             CcEEEEeCC--CC-ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          231 QSIKIWDLE--SK-SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       231 ~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +.|++||++  ++ ++.. .+..              ..+.........+.+.++|.+.++...++.|..|+.
T Consensus       201 ~~I~~~d~~~~~Gl~~~~-~~~~--------------~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGK-AEVF--------------IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSC-CEEE--------------EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CEEEEEEcccccCCcccC-ceEE--------------EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            789999986  44 3211 0000              000001122356778888887776666788888875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=1e-10  Score=99.36  Aligned_cols=186  Identities=15%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             CcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEE
Q 048118           28 SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKL  107 (303)
Q Consensus        28 ~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~v  107 (303)
                      ++++++++.|+.|..||...++....     +..                    +.+.+..+..++..+++++.|+.|..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~-----~~~--------------------~~~~s~p~~~~g~~~v~~s~dg~l~a   63 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWT-----LKE--------------------DPVLQVPTHVEEPAFLPDPNDGSLYT   63 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEE-----EEC--------------------CCSCCCC-----CCEEECTTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEE-----ecC--------------------CCceecceEcCCCEEEEeCCCCEEEE
Confidence            46899999999999999876543221     110                    11222223456667787889999999


Q ss_pred             EecCC-ceeeeeecCCCCccceEEEEEcCCC-CCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEE
Q 048118          108 WNTLG-ECKYTIQEGDAHTEWVSCVRFSPNT-LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA  185 (303)
Q Consensus       108 w~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  185 (303)
                      ||... +..+.... . ....+.   .+|-. ....+++++.++.++.||.++++.+..+..+.    ...++|++..++
T Consensus        64 ~d~~tG~~~w~~~~-~-~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~  134 (369)
T 2hz6_A           64 LGSKNNEGLTKLPF-T-IPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLY  134 (369)
T ss_dssp             C-----CCSEECSC-C-HHHHHT---TCSCC-----CCCCEEEEEEEEECCC--------------------------EE
T ss_pred             EECCCCceeeeeec-c-Cccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEE
Confidence            99743 22222110 0 001110   01110 11246677889999999999998876665443    234567788889


Q ss_pred             EEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCC----CeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118          186 SGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN----RYWLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       186 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      +++.|+.|+.||.++++.+..+.... ....++.++    +.+++++.++.|+.||.++++.+....
T Consensus       135 ~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          135 LGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            99999999999999998766543211 122233332    567777889999999999998876544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=2.6e-06  Score=72.86  Aligned_cols=241  Identities=14%  Similarity=0.144  Sum_probs=136.3

Q ss_pred             CCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee-c-ccCCEEEEEEeeCCCEEEEEeCC
Q 048118           25 IDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV-G-HTKDVLSVAFSIDNRQIVSASRD  102 (303)
Q Consensus        25 ~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-h~~~i~~i~~~~~~~~l~t~~~d  102 (303)
                      +++..+++++..++.|.++|..+........  +.           +.++ .+. . -......+...|+| +++++..+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~--k~-----------ie~~-~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~  157 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKII--KV-----------IEPE-EVKKVSGYSRLHTVHCGPDA-IYISALGN  157 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEE--EE-----------ECHH-HHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceee--ee-----------echh-hcccccCCCcccceeECCCe-EEEEcCCC
Confidence            6677788889999999999986432211100  00           0000 000 0 01133456677888 66666555


Q ss_pred             ------CcEEEEecCCceeeeeecCCCCc-cceEEEEEcCCCCCCEEEEEe-------------------CCCcEEEEEC
Q 048118          103 ------RTIKLWNTLGECKYTIQEGDAHT-EWVSCVRFSPNTLQPTIVSAS-------------------WDRTVKVWNL  156 (303)
Q Consensus       103 ------~~i~vw~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~-------------------~dg~i~iwd~  156 (303)
                            +.+.+.|..+............. ..-..+.|+|+.  ..+++..                   ....|.+||+
T Consensus       158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence                  68999997643322221111111 112357788875  4667664                   3689999999


Q ss_pred             CCceeEEEEcCC-C-CCeeEEEE--CCCCCEEEEEe------CCCeEEEEeCCCCce--EEEe--cC-------------
Q 048118          157 SNCKLRATLAGH-T-GYVNTVAV--SPDGSLCASGG------KDGVILLWDLAEGKR--LYSL--DA-------------  209 (303)
Q Consensus       157 ~~~~~~~~~~~~-~-~~i~~~~~--~~~~~~l~~~~------~d~~v~iwd~~~~~~--~~~~--~~-------------  209 (303)
                      .+++...++.-. . .....+.|  +|+++++.+++      .+++|.+|....++.  +..+  ..             
T Consensus       236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred             CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence            988877777642 1 22345555  99999876665      566887765543321  1111  10             


Q ss_pred             ----CCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCC---ceeeeeeeccccccccccCccceeecccc--ceeEEEEE
Q 048118          210 ----GAVIHALCFSPNRYWLCAAT--EQSIKIWDLESK---SIVEDLKVDLKTEAEKSEATTATTTIKKK--NIYCTSLN  278 (303)
Q Consensus       210 ----~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  278 (303)
                          ......+.+|+|+.+|.++.  .+.|.+||+...   +++..+.+.  ...  ....   .. ++.  ......+.
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG--G~~--~~~~---~~-~G~~~~ggPr~~~  387 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG--GIF--HRAD---HP-AGHKLTGAPQMLE  387 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB--TTT--TCBC---CT-TSCCCCSCCCCEE
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC--Cee--cccc---cc-ccccCCCCCCEEE
Confidence                23456788999998776664  678999998532   344333321  000  0000   00 000  01234578


Q ss_pred             EcCCCCEEEEee
Q 048118          279 WSVDGSTLFSGY  290 (303)
Q Consensus       279 ~sp~~~~l~~gs  290 (303)
                      ++|||++|.++.
T Consensus       388 lSpDGk~LyVaN  399 (462)
T 2ece_A          388 ISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSSEEEEEC
T ss_pred             EcCCCCEEEEEc
Confidence            999999999888

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.91  E-value=2e-07  Score=79.63  Aligned_cols=208  Identities=17%  Similarity=0.183  Sum_probs=123.0

Q ss_pred             eCCCEE-EEEeCCCcEEEEecCCcee-----eeeecC----CCCccceEEEEEcCCCCCCEEEEEeCC------CcEEEE
Q 048118           91 IDNRQI-VSASRDRTIKLWNTLGECK-----YTIQEG----DAHTEWVSCVRFSPNTLQPTIVSASWD------RTVKVW  154 (303)
Q Consensus        91 ~~~~~l-~t~~~d~~i~vw~~~~~~~-----~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~d------g~i~iw  154 (303)
                      +++++| +++..++.|.++|......     ..+...    +.....-..+...|++   .++++..+      +.|.++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEE
Confidence            666654 5566788999999753311     111000    0011123445666875   45554444      789999


Q ss_pred             ECCCceeEEEEcCCC---CCeeEEEECCCCCEEEEEe-------------------CCCeEEEEeCCCCceEEEecCC--
Q 048118          155 NLSNCKLRATLAGHT---GYVNTVAVSPDGSLCASGG-------------------KDGVILLWDLAEGKRLYSLDAG--  210 (303)
Q Consensus       155 d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~--  210 (303)
                      |.++++.+.++....   ..-..+.|+|+++.++++.                   ...+|.+||+.+++.+.++..+  
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            999999888876322   2234688999999888774                   3789999999998888887664  


Q ss_pred             -CeEEEEEE--cCCCeEEEE--E-----cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc
Q 048118          211 -AVIHALCF--SPNRYWLCA--A-----TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS  280 (303)
Q Consensus       211 -~~v~~~~~--s~~~~~l~~--~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  280 (303)
                       .....+.|  +|++.++.+  .     -+++|.+|..+.++......+++...............+.+.......+.+|
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             23445555  999865433  3     4568888776654432222121111000000000000000101234678899


Q ss_pred             CCCCEEEEeec-CCeEEEEecc
Q 048118          281 VDGSTLFSGYT-DGVIRVWGIG  301 (303)
Q Consensus       281 p~~~~l~~gs~-Dg~v~~w~~~  301 (303)
                      |||++|.++.. .+.|.+||+.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECS
T ss_pred             CCCCEEEEEeCCCCEEEEEEec
Confidence            99998876655 7899999974

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.88  E-value=7.1e-08  Score=81.41  Aligned_cols=243  Identities=10%  Similarity=0.042  Sum_probs=140.4

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEec---------CCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTAS---------RDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ   76 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   76 (303)
                      ++++++.....+  .+.++|++...+++.+         .+++|.+||....+...               .+.+....+
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~---------------~I~v~~~~~  119 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA---------------DIELPDAPR  119 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE---------------EEEETTSCS
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE---------------EEECCCccc
Confidence            445555444444  7899998776555542         47899999987654221               111110000


Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeC--CCcEEE--EecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASR--DRTIKL--WNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVK  152 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~--d~~i~v--w~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~  152 (303)
                      +. .......+.++|+|++++.+..  +..+.+  +|...  ...+....       |....|++. ..+++.+.|+.+.
T Consensus       120 ~~-~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~-------~~~~~p~g~-~~~~~~~~dg~~~  188 (368)
T 1mda_H          120 FS-VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSAS-------CFHIHPGAA-ATHYLGSCPASLA  188 (368)
T ss_dssp             CC-BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSS-------CCCCEEEET-TEEECCCCTTSCE
T ss_pred             cc-cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCC-------ceEEccCCC-eEEEEEcCCCCEE
Confidence            00 0012446889999999888864  456888  88744  22221110       011234432 3456667788888


Q ss_pred             EEECCC-----ceeEEE----EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEecCC-------Ce--
Q 048118          153 VWNLSN-----CKLRAT----LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAG-------AV--  212 (303)
Q Consensus       153 iwd~~~-----~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~-------~~--  212 (303)
                      +.|+.+     ++....    +.-...+.   . ++++..++..+. +.+.+.|+.++.  .+..+...       ..  
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            888876     332210    11112233   3 566666666666 999999986542  22222211       11  


Q ss_pred             --EEEEEEcCCCeEEEEE-c-C--------CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc
Q 048118          213 --IHALCFSPNRYWLCAA-T-E--------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS  280 (303)
Q Consensus       213 --v~~~~~s~~~~~l~~~-~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  280 (303)
                        ...++++|++..+.++ . .        +.+.++|+.+.+.+..+.+.                     .....++|+
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------------------~~p~gi~~s  322 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------------------HDSDAIIAA  322 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------------------EEECEEEEC
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---------------------CCcceEEEC
Confidence              1126799997544432 2 2        35779999999888766532                     124678999


Q ss_pred             CCCC-EEEEee-cCCeEEEEeccc
Q 048118          281 VDGS-TLFSGY-TDGVIRVWGIGR  302 (303)
Q Consensus       281 p~~~-~l~~gs-~Dg~v~~w~~~~  302 (303)
                      |||+ .+++.. .++.|.++|+..
T Consensus       323 ~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          323 QDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CCCCEEEEEccCCCCeEEEEECCC
Confidence            9998 455666 599999999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.88  E-value=8.6e-07  Score=72.98  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=98.2

Q ss_pred             CCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .-.....|+++++ ++.+...++.|..|+..+.. ....   .....+..+.+++++  ..+++...++.|..|+.. ++
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~---~~~~~~~gl~~d~dG--~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLL---DATAFTNGNAVDAQQ--RLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEE---ESCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEe---CCCCccceeeECCCC--CEEEEECCCCEEEEECCC-CC
Confidence            3456788999998 56677778899999875432 2221   123457889999976  344444445789999875 44


Q ss_pred             eEEEEc---CC-CCCeeEEEECCCCCEEEE----EeC-------------CCeEEEEeCCCCceEEEecCCCeEEEEEEc
Q 048118          161 LRATLA---GH-TGYVNTVAVSPDGSLCAS----GGK-------------DGVILLWDLAEGKRLYSLDAGAVIHALCFS  219 (303)
Q Consensus       161 ~~~~~~---~~-~~~i~~~~~~~~~~~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s  219 (303)
                      ......   +. ...+..++++|+|+++++    |..             .+.|..+|..+++..... .....+.++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS  196 (305)
T ss_dssp             EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred             EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence            322211   11 134678999999998886    332             256888887666543222 22456789999


Q ss_pred             CCCeEEEEE-cC------CcEEEEeCCCCc
Q 048118          220 PNRYWLCAA-TE------QSIKIWDLESKS  242 (303)
Q Consensus       220 ~~~~~l~~~-~~------~~i~iwd~~~~~  242 (303)
                      |++..|..+ ..      +.|++|++..+.
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            998755443 33      689999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.88  E-value=7.4e-10  Score=94.11  Aligned_cols=177  Identities=16%  Similarity=0.155  Sum_probs=89.8

Q ss_pred             CCCEEEEEeCCCcEEEEecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCC
Q 048118           92 DNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTG  170 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~  170 (303)
                      ++..+++++.|+.|..||.. ++..+....     ..+.+..+..++  ..+++++.|+.|+.||.++++....+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g--~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEE--PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCC--CEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            46788899999999999964 344444332     112222222332  2466678999999999988876555543211


Q ss_pred             -Cee-EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceeeee
Q 048118          171 -YVN-TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       171 -~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                       .+. +..+. .+..+++++.|+.++.||.++|+.+..+.....   ..++|++ .+++++.++.|+.||.++++++...
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence             110 01111 345677888899999999999998877654332   2344554 4555667899999999998876554


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCC---CEEEEeecCCeEEEEecc
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG---STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~l~~gs~Dg~v~~w~~~  301 (303)
                      .....                      ....+.++.   ..+++++.||.++.||..
T Consensus       157 ~~~~~----------------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          157 TYFDY----------------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             EEEEE----------------------CCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             ecccc----------------------cCccccCCccccceEEEECCCCEEEEEECC
Confidence            32100                      011122221   456778888888888863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=1.8e-06  Score=69.12  Aligned_cols=203  Identities=6%  Similarity=0.014  Sum_probs=128.8

Q ss_pred             EEEEEEeeCCCEEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           84 VLSVAFSIDNRQIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ...+.|++++.++++.+.  ++.|++.|..............+ .....+.+..+   ...++.-.++.+.++|..+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~---~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNE---KLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETT---EEEEEETTCSEEEEEETTTTEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCC---EEEEEEecCCEEEEEECCCCcE
Confidence            568999998765555553  57899999865433222111111 11234555432   2344445678999999999988


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC------CeEEEEEEcCCCeEEEEE-cCCcEE
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG------AVIHALCFSPNRYWLCAA-TEQSIK  234 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~-~~~~i~  234 (303)
                      ..++......  ...++++++.+.++..+++|.++|..+.+.+.++..+      ...+.+.|. ++.+.+.. ..+.|.
T Consensus        99 ~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A           99 IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence            8887533112  2335567776666667899999999998888777542      136678887 66555544 478999


Q ss_pred             EEeCCCCceeeeeeec-cccccccccCccceeeccccceeEEEEEEcCCCC-EEEEeecCCeEEEEecc
Q 048118          235 IWDLESKSIVEDLKVD-LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs~Dg~v~~w~~~  301 (303)
                      +.|.++++++..+.+. +........        .........++|+|+++ +++++...+.+.+-++.
T Consensus       176 vID~~tg~V~~~I~~~g~~~~~~~~~--------~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          176 RISAKDGTLLGWILLPNLRKKLIDEG--------FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHHHTT--------CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEECCCCcEEEEEECCCccccccccc--------ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            9999999998877653 110000000        00112346799999987 55667788888887763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.86  E-value=2.6e-07  Score=85.06  Aligned_cols=203  Identities=14%  Similarity=0.112  Sum_probs=114.3

Q ss_pred             EEeCCCCceecccCCEEEEEEeeCCCEEEEE-----eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           69 VVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA-----SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        69 ~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                      +.+.++.--.+|...+..++|+|+|+++|-+     +....|++||+.+........   .......++|+ ++  ..|+
T Consensus       116 vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---~~~k~~~~~Ws-Dg--~~l~  189 (693)
T 3iuj_A          116 VFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---KDVKFSGISWL-GN--EGFF  189 (693)
T ss_dssp             EEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE---EEEESCCCEEE-TT--TEEE
T ss_pred             EEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc---CCceeccEEEe-CC--CEEE
Confidence            3444433223455678889999999988743     333579999986543222110   00112457788 76  3466


Q ss_pred             EEeCCC-------------cEEEEECCCcee----EEEEcC-CCCCeeEEEECCCCCEEEEEeC----CCeEEEEeCCCC
Q 048118          144 SASWDR-------------TVKVWNLSNCKL----RATLAG-HTGYVNTVAVSPDGSLCASGGK----DGVILLWDLAEG  201 (303)
Q Consensus       144 ~~~~dg-------------~i~iwd~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~  201 (303)
                      .+..+.             .|++|++.+.+.    +..... |......+.++|+|++|+....    +..|.++|+.++
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            666553             389999876542    222222 3345778999999998754432    358999999766


Q ss_pred             c-eEEEec-CCCeEEEEEEcCCC-eEEEEEc----CCcEEEEeCCCCce--eeeeeeccccccccccCccceeeccccce
Q 048118          202 K-RLYSLD-AGAVIHALCFSPNR-YWLCAAT----EQSIKIWDLESKSI--VEDLKVDLKTEAEKSEATTATTTIKKKNI  272 (303)
Q Consensus       202 ~-~~~~~~-~~~~v~~~~~s~~~-~~l~~~~----~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (303)
                      . ....+. ........ +++++ .++..+.    .++|..+|+.++..  ...+..                    +..
T Consensus       270 ~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--------------------~~~  328 (693)
T 3iuj_A          270 NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--------------------ERQ  328 (693)
T ss_dssp             TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--------------------CCS
T ss_pred             CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--------------------CCC
Confidence            3 223332 22222333 44444 4444443    25789999876532  011100                    001


Q ss_pred             eEEEEEEcCCCCEEEEeec-CC--eEEEEec
Q 048118          273 YCTSLNWSVDGSTLFSGYT-DG--VIRVWGI  300 (303)
Q Consensus       273 ~~~~~~~sp~~~~l~~gs~-Dg--~v~~w~~  300 (303)
                      .+.  .|+|++.+|+.... ||  .|++|++
T Consensus       329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          329 QVL--TVHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             SCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred             CEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence            112  67888887765554 44  5777765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.77  E-value=2.4e-07  Score=78.23  Aligned_cols=100  Identities=17%  Similarity=0.131  Sum_probs=79.3

Q ss_pred             CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCC-------
Q 048118          148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAG-------  210 (303)
Q Consensus       148 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~-------  210 (303)
                      ++.|.++|..+++...++.....+ . ++++|+|+++.++.          .++.|.+||..+.+.+.++...       
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            679999999999988888765555 3 99999999887665          3678999999999988877432       


Q ss_pred             -CeEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118          211 -AVIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       211 -~~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~  249 (303)
                       .....++|+|||.++.++.   ++.|.++|+.+++++..+.+
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence             2345689999997665543   57899999999999887754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=2.1e-06  Score=71.98  Aligned_cols=204  Identities=13%  Similarity=0.131  Sum_probs=119.3

Q ss_pred             CCEEEEEEeeCCCEEEEEe--CCCcEEEEecCCceeeeee----cCCCCccceEEEEEcCCCCCCEEEEEeC-----CCc
Q 048118           82 KDVLSVAFSIDNRQIVSAS--RDRTIKLWNTLGECKYTIQ----EGDAHTEWVSCVRFSPNTLQPTIVSASW-----DRT  150 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~--~d~~i~vw~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----dg~  150 (303)
                      ..+..++++++|+.+++..  .++.++||.+.........    ....+...+..+++++++  ..+++-..     +..
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g--~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG--IVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS--EEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC--cEEEEcCCCCcCCCCe
Confidence            4678899999999888864  2343556654322111110    111233468899999875  23333222     578


Q ss_pred             EEEEECCCceeEEEEcCC------CCCeeEEEECCCCCE-EEEEe---CCCeEEEEeCCCCceEEEecC-----------
Q 048118          151 VKVWNLSNCKLRATLAGH------TGYVNTVAVSPDGSL-CASGG---KDGVILLWDLAEGKRLYSLDA-----------  209 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~-l~~~~---~d~~v~iwd~~~~~~~~~~~~-----------  209 (303)
                      |.+||+.+++....+...      ......++++|++.. +++..   .++.|.+||+.+++....+..           
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999988866655422      234688999986544 45555   678999999987765443311           


Q ss_pred             -------------------CCeEEEEEEcCCCeEEEEE-cC-CcEEEEeCC---CCceeeeeeeccccccccccCcccee
Q 048118          210 -------------------GAVIHALCFSPNRYWLCAA-TE-QSIKIWDLE---SKSIVEDLKVDLKTEAEKSEATTATT  265 (303)
Q Consensus       210 -------------------~~~v~~~~~s~~~~~l~~~-~~-~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (303)
                                         ...+..++|+|++..|..+ .. +.|+.++..   .+.+ .....       ...     .
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~-------~~~-----~  241 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-TDAEL-------GSK-----I  241 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC-CHHHH-------HTT-----C
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC-Chhhh-------hcc-----e
Confidence                               0125779999998655443 33 355555431   1100 00000       000     0


Q ss_pred             eccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          266 TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       266 ~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      ...+.......++++++|.++++...++.|.+||.
T Consensus       242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             EecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            00001112345888999999999999999999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.73  E-value=1e-05  Score=64.18  Aligned_cols=190  Identities=8%  Similarity=0.011  Sum_probs=118.5

Q ss_pred             EEEEEeeCCCEEEEEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           85 LSVAFSIDNRQIVSASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      ..+.|+ ++.++.+.+.++  .|+++|+.+............ ..-..+....+   ...+..-.++.+.+||.++.+..
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~---~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKD---KIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETT---EEEEEESSSSEEEEEETTTCCEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCC---EEEEEEeeCCEEEEEECccCcEE
Confidence            567887 677777777766  899999865433222211111 11123444332   23333345789999999999988


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC------CeEEEEEEcCCCeEEEEE-cCCcEEE
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG------AVIHALCFSPNRYWLCAA-TEQSIKI  235 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~-~~~~i~i  235 (303)
                      .++.... .-..+  .++++.|+.+..+++|.++|..+.+.+.++...      ..++.+.|. +|.+.+.. .++.|.+
T Consensus       121 ~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v  196 (262)
T 3nol_A          121 RSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR  196 (262)
T ss_dssp             EEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence            8887532 21333  356776666656789999999999888776542      234567776 56655554 5789999


Q ss_pred             EeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      .|.++++++..+.+.-....... .       .......+.|+|+|+++.|++.+.
T Consensus       197 IDp~tG~V~~~Id~~~L~~~~~~-~-------~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          197 IDPETGKVTGIIDLNGILAEAGP-L-------PSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ECTTTCBEEEEEECTTGGGGSCS-C-------CSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCcEEEEEECCcCcccccc-c-------cCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999988776421110000 0       011123478999999887776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.71  E-value=5e-06  Score=65.96  Aligned_cols=188  Identities=6%  Similarity=-0.020  Sum_probs=119.9

Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      ..+.|+ ++.+..+.+.++.|+++|+.+....... .... ..-..+.+..+   ...+..-.++.+.+||.++.+.+.+
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-~FgeGit~~g~---~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-IFAEGLASDGE---RLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-CCEEEEEECSS---CEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-cceeEEEEeCC---EEEEEEccCCEEEEEECCcCcEEEE
Confidence            567776 4667778888899999998643322211 1111 11123555432   2344445688999999999998888


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC------CeEEEEEEcCCCeEEEEE-cCCcEEEEe
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG------AVIHALCFSPNRYWLCAA-TEQSIKIWD  237 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~-~~~~i~iwd  237 (303)
                      +.... .-..++  ++++.|+.+..+++|.++|..+.+.+.++...      ..++.+.|. +|.+.+.. ..+.|.+.|
T Consensus       132 i~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             EeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            87532 223444  56777777767899999999999888777532      245677777 56555554 478999999


Q ss_pred             CCCCceeeeeeec-cccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          238 LESKSIVEDLKVD-LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       238 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      .++++++..+.+. +.......        ........+.|+|.|+++.|++.+
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~--------~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQ--------VTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTT--------CCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEEECCCCccccccc--------ccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999887764 11111000        001112347899999876555444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.70  E-value=1.3e-06  Score=74.15  Aligned_cols=94  Identities=11%  Similarity=0.012  Sum_probs=73.7

Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCC--------C
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAG--------A  211 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~--------~  211 (303)
                      .|.++|..+++...++.....+  .+.++|+++++.++.          .++.|.++|..+.+.+..+...        .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            7899999999888777654444  899999999988775          3678999999988877766432        2


Q ss_pred             eEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeee
Q 048118          212 VIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVED  246 (303)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~  246 (303)
                      ....++|+|++.+|.++.   ++.|.++| ++++++..
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            345789999998776553   46799999 99888765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.70  E-value=1.6e-05  Score=67.24  Aligned_cols=224  Identities=12%  Similarity=0.151  Sum_probs=124.7

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW  108 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw  108 (303)
                      +.+..++.++.|..+|..+++......   +.....           ........+.. ....++..++.++.++.|..+
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~---~~~~~~-----------~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~  118 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVS---LAEKDG-----------WFSKEPALLSG-GVTVSGGHVYIGSEKAQVYAL  118 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEE---CCC--------------CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEE
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeec---Cccccc-----------cccccCccccc-CceEeCCEEEEEcCCCEEEEE
Confidence            567778888899999986554322111   000000           00000111221 112235567778889999999


Q ss_pred             ecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe-----eEEEECCCCC
Q 048118          109 NTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV-----NTVAVSPDGS  182 (303)
Q Consensus       109 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~  182 (303)
                      |.. +...+.........   ...... +   ..++.++.++.+..+|..+++............     ......  +.
T Consensus       119 d~~tG~~~W~~~~~~~~~---~~p~~~-~---~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~  189 (376)
T 3q7m_A          119 NTSDGTVAWQTKVAGEAL---SRPVVS-D---GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG  189 (376)
T ss_dssp             ETTTCCEEEEEECSSCCC---SCCEEE-T---TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT
T ss_pred             ECCCCCEEEEEeCCCceE---cCCEEE-C---CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC
Confidence            975 33333332211100   011111 1   357778889999999999888776654422111     112222  35


Q ss_pred             EEEEEeCCCeEEEEeCCCCceEEEecCCCeE-----E---EEEEc---CCCeEEEEEcCCcEEEEeCCCCceeeeeeecc
Q 048118          183 LCASGGKDGVILLWDLAEGKRLYSLDAGAVI-----H---ALCFS---PNRYWLCAATEQSIKIWDLESKSIVEDLKVDL  251 (303)
Q Consensus       183 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-----~---~~~~s---~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~  251 (303)
                      .++.++.++.+..+|..+++.+.........     .   .+...   .++.+++.+.++.+..+|.++++.+.......
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~  269 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS  269 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC
Confidence            6777888999999999999988766432110     0   01011   14566666778999999999988765433110


Q ss_pred             ccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                                            ...+.  .++..|.+++.+|.+..+|.
T Consensus       270 ----------------------~~~~~--~~~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          270 ----------------------VNDFI--VDGNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             ----------------------EEEEE--EETTEEEEEETTCCEEEEET
T ss_pred             ----------------------CCCce--EECCEEEEEcCCCeEEEEEC
Confidence                                  01111  23556777777777777775

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.67  E-value=7.6e-05  Score=59.90  Aligned_cols=204  Identities=13%  Similarity=0.065  Sum_probs=121.4

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .+..+++++.+..++++-..++.|..++.......     .           + +.      ........+++++++..+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~-----------~-~~------~~~~~p~~ia~d~~~~~l   93 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----T-----------I-IR------QDLGSPEGIALDHLGRTI   93 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----E-----------E-EC------TTCCCEEEEEEETTTTEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----E-----------E-EE------CCCCCccEEEEEecCCeE
Confidence            35678888866667777777788888887432110     0           0 00      011356789999876554


Q ss_pred             E-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC---CCcEEEEECCCceeEEEEcCCCCCe
Q 048118           97 V-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW---DRTVKVWNLSNCKLRATLAGHTGYV  172 (303)
Q Consensus        97 ~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i  172 (303)
                      + +-...+.|.+++..+.....+...  .......++++|+.  ..+..+..   .+.|..+++................
T Consensus        94 yv~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P  169 (267)
T 1npe_A           94 FWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP  169 (267)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCE
T ss_pred             EEEECCCCEEEEEEcCCCCEEEEEEC--CCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCC
Confidence            4 445567888888765332222211  11345789999854  23433333   3678888875433222222223456


Q ss_pred             eEEEECCCCCEE-EEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCCceeeeee
Q 048118          173 NTVAVSPDGSLC-ASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       173 ~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~  248 (303)
                      ..++++|++..| ++-...++|.++|+.................++.. ++.++++. ..+.|..+|..+++.+..+.
T Consensus       170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            889999987665 44456789999998754433223333334566665 34444443 46899999999888776554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.63  E-value=3.8e-06  Score=74.22  Aligned_cols=198  Identities=11%  Similarity=0.107  Sum_probs=122.3

Q ss_pred             eCCCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEE-c-CCCCCCEEEEEe------------------CCC
Q 048118           91 IDNRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRF-S-PNTLQPTIVSAS------------------WDR  149 (303)
Q Consensus        91 ~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~~~------------------~dg  149 (303)
                      ++|+++..+.. ++.|.+.|+.......+... +....+..+++ . |++  .++++++                  .++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-p~g~~phg~~~~~~p~~--~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRS--NYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBC--SEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-CCCCCCcceeeeecCCC--cEEEEecccccccCCCCcccccccccCc
Confidence            37777665554 55688889865432222221 11223667776 4 665  3455553                  245


Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCC--------------------------------------
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDG--------------------------------------  191 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------------------------------  191 (303)
                      .+-+.|..+.+...++.--. .-..++++|+|+++.+++.+.                                      
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            78899999988777765322 345678999999988887543                                      


Q ss_pred             eEEEEeCCC--Cce-EEEecCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCccceee
Q 048118          192 VILLWDLAE--GKR-LYSLDAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTT  266 (303)
Q Consensus       192 ~v~iwd~~~--~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (303)
                      .|.|.|.++  ++. +..+..+.....+.++|||.++.++.  ++.|.++|+++.+....-++.....        ....
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~--------v~~~  326 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA--------VVAE  326 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG--------EEEC
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc--------eEEE
Confidence            467777776  444 45555455566789999998776664  6789999997543211101100000        0000


Q ss_pred             ccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          267 IKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       267 ~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .. .......++|+|+|....+..-|+.|.+||+.
T Consensus       327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence            00 12234678999999555677889999999985

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.61  E-value=7e-05  Score=58.83  Aligned_cols=191  Identities=13%  Similarity=0.027  Sum_probs=117.9

Q ss_pred             EEEEEEeeCCCEEEEEeCC--CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           84 VLSVAFSIDNRQIVSASRD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ...+.|++ +.++.+.+.+  ..|+.+|+.+............. .-..+....+   ......-.++.+.+||.++.+.
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~---~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRD---RLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETT---EEEEEESSSSEEEEEETTTTEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCC---EEEEEEeeCCEEEEEECCcCcE
Confidence            45788876 5666666665  48999998654332222111111 1123444332   2333445678999999999998


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC------CeEEEEEEcCCCeEEEEE-cCCcEE
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG------AVIHALCFSPNRYWLCAA-TEQSIK  234 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~-~~~~i~  234 (303)
                      ..++.... .-..++  ++++.|..+..+++|.++|..+.+.+.++...      ..++.+.+. ++.+.+.. ..+.|.
T Consensus        98 ~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~  173 (243)
T 3mbr_X           98 RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA  173 (243)
T ss_dssp             EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence            88887533 224444  45666655556889999999998888777542      245667776 55555554 578999


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      +.|.++++++..+.+.-....... ..      .......+.|+++|+++.|++.+
T Consensus       174 vIDp~tG~V~~~idl~~l~~~~~~-~~------~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          174 RIDPASGKVVAWIDLQALVPDADA-LT------DSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EECTTTCBEEEEEECGGGSTTTTS-CC------CTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEECCcCcccccc-cc------CCcCCceEEEEEcCCCCEEEEEC
Confidence            999999999988775421110000 00      01112347899999887666555

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.60  E-value=7.2e-06  Score=72.51  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=62.9

Q ss_pred             cEEEEECCC--cee-EEEEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCc------------eEEEecCCCeE
Q 048118          150 TVKVWNLSN--CKL-RATLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGK------------RLYSLDAGAVI  213 (303)
Q Consensus       150 ~i~iwd~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~------------~~~~~~~~~~v  213 (303)
                      .|.+.|.++  ++. ...+... ....++.++|||+++++++ .+.+|.++|+.+.+            .+..+..+...
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             cEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            366677765  333 3334321 2456789999999876665 58899999998653            34556667778


Q ss_pred             EEEEEcCCCeEEEE-EcCCcEEEEeCCC
Q 048118          214 HALCFSPNRYWLCA-ATEQSIKIWDLES  240 (303)
Q Consensus       214 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~  240 (303)
                      ..++|+|+|...++ .-+++|.+||++.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            88999999943233 3489999999876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.59  E-value=1.5e-05  Score=73.09  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             EEEEcCCCCCCEEEEEeCCC-------------------cEEEEECCCceeEEEEcC--CC-------CCeeEEEECCCC
Q 048118          130 CVRFSPNTLQPTIVSASWDR-------------------TVKVWNLSNCKLRATLAG--HT-------GYVNTVAVSPDG  181 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~  181 (303)
                      .+.++|+.  ..++.+..++                   .|..+|.++++.+..++.  |.       .+........+|
T Consensus       239 ~~~~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          239 SFAYDPEL--NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             CEEEETTT--TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceeEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            45677654  3566666665                   399999999998877654  21       111112222245


Q ss_pred             C---EEEEEeCCCeEEEEeCCCCceEEE
Q 048118          182 S---LCASGGKDGVILLWDLAEGKRLYS  206 (303)
Q Consensus       182 ~---~l~~~~~d~~v~iwd~~~~~~~~~  206 (303)
                      +   .++.++.+|.++++|.++++.+..
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            4   788899999999999999998744

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.59  E-value=1.2e-05  Score=73.54  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=87.0

Q ss_pred             cEEEEECCCceeEEEEcC--CC-------CCeeEEEECCCC---CEEEEEeCCCeEEEEeCCCCceEEEecCC-------
Q 048118          150 TVKVWNLSNCKLRATLAG--HT-------GYVNTVAVSPDG---SLCASGGKDGVILLWDLAEGKRLYSLDAG-------  210 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------  210 (303)
                      .|..+|.++++.+..++.  |.       .....+....+|   ..++.++.+|.+.++|.++++.+..+...       
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            599999999988776653  21       111222333366   67889999999999999999988765321       


Q ss_pred             -----CeE------------------------EEEEEcCCCeEEEE-Ec-------------------------------
Q 048118          211 -----AVI------------------------HALCFSPNRYWLCA-AT-------------------------------  229 (303)
Q Consensus       211 -----~~v------------------------~~~~~s~~~~~l~~-~~-------------------------------  229 (303)
                           .++                        ..++++|++.++.+ ..                               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                 111                        14678887554433 21                               


Q ss_pred             ------------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEE
Q 048118          230 ------------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV  297 (303)
Q Consensus       230 ------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~  297 (303)
                                  .+.|..||+++++++...+....                     .....+++.+.++++|+.||.+++
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---------------------~~~g~~~~~g~~v~~g~~dg~l~a  502 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP---------------------WNGGTLTTAGNVVFQGTADGRLVA  502 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS---------------------CCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCC---------------------CcCcceEeCCCEEEEECCCCcEEE
Confidence                        16789999999888766543110                     011234567788999999999999


Q ss_pred             Eecc
Q 048118          298 WGIG  301 (303)
Q Consensus       298 w~~~  301 (303)
                      ||+.
T Consensus       503 ~D~~  506 (677)
T 1kb0_A          503 YHAA  506 (677)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9974

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.57  E-value=2.9e-06  Score=72.87  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=79.5

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCC--------
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAG--------  210 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~--------  210 (303)
                      +.|.++|..+++...++.....+  .+.++|+++++.++.          .++.|.++|..+++.+.++...        
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            69999999999998888765555  899999999887765          4679999999999988776432        


Q ss_pred             CeEEEEEEcCCCeEEEEEc---CCcEEEEeCCCCceeeeeee
Q 048118          211 AVIHALCFSPNRYWLCAAT---EQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       211 ~~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~  249 (303)
                      .....+.|+|++.++.++.   ++.|.+.|+.+++++..+.+
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            2345688999997776653   57899999999999887765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.55  E-value=8.8e-06  Score=74.53  Aligned_cols=163  Identities=12%  Similarity=0.116  Sum_probs=103.4

Q ss_pred             EEEEeeCCCEEEEEeCCC-------------------cEEEEecCC-ceeeeeecCCCCc-------cceEEEEEcCCCC
Q 048118           86 SVAFSIDNRQIVSASRDR-------------------TIKLWNTLG-ECKYTIQEGDAHT-------EWVSCVRFSPNTL  138 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~-------------------~i~vw~~~~-~~~~~~~~~~~~~-------~~i~~~~~~~~~~  138 (303)
                      .+++++++.+++.+..++                   .|..+|..+ +..+..+.. .+.       .....+....++.
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEecccCCc
Confidence            567888888887776653                   477777653 333333321 111       1111122222221


Q ss_pred             -CCEEEEEeCCCcEEEEECCCceeEEEEcCCC-----------CCe------------------------eEEEECCCCC
Q 048118          139 -QPTIVSASWDRTVKVWNLSNCKLRATLAGHT-----------GYV------------------------NTVAVSPDGS  182 (303)
Q Consensus       139 -~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~  182 (303)
                       ...++.++.+|.++++|..+++.+..+....           .++                        ..++++|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence             1357888999999999999998776543211           001                        1468889888


Q ss_pred             EEEEEeC-------------------------------------------CCeEEEEeCCCCceEEEecCCCeEEEEEEc
Q 048118          183 LCASGGK-------------------------------------------DGVILLWDLAEGKRLYSLDAGAVIHALCFS  219 (303)
Q Consensus       183 ~l~~~~~-------------------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s  219 (303)
                      ++.+...                                           .+.|..||+.+++.+.++.....+....+.
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~  485 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT  485 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE
Confidence            8776543                                           278999999999988877554333333333


Q ss_pred             C-CCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          220 P-NRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       220 ~-~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      . ++.++.++.++.+++||.++++++..+.+
T Consensus       486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence            3 45566666799999999999999887764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.51  E-value=2.4e-05  Score=64.65  Aligned_cols=182  Identities=14%  Similarity=0.136  Sum_probs=110.1

Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      .++...+++. +..++.++.|..+|..+........   ....+.++...+++   .+..++  +.+..+| .+++....
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~d~~g---~l~v~t--~~l~~~d-~~g~~~~~  209 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKT---NDAITSAASIGKDG---TIYFGS--DKVYAIN-PDGTEKWN  209 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEEC---SSCCCSCCEECTTC---CEEEES--SSEEEEC-TTSCEEEE
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEec---CCCceeeeEEcCCC---EEEEEe--CEEEEEC-CCCcEEEE
Confidence            3444555555 5557777889999876433332221   12234445555543   244455  8899999 66666656


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCce
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~  243 (303)
                      +......+.++...+++... .++.++.+..+|. +++.+..+... ..+..+...+++.+.+++.++.|..+|. +++.
T Consensus       210 ~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          210 FYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             ECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE
T ss_pred             EccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcE
Confidence            65555678888888887654 4666788888874 55555554332 2233455566777777777889999996 5665


Q ss_pred             eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          244 VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +......                    ...+.++...+++. |..|+.+|.+++...
T Consensus       287 ~~~~~~~--------------------~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          287 KWNFETG--------------------SWIIATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             EEEEECS--------------------SCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             EEEEEcC--------------------CccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence            5433221                    00112344445554 666899999988764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.49  E-value=2.8e-05  Score=65.73  Aligned_cols=181  Identities=14%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             CCEEEEEeCCCcEEEEecCC-ceeeeeecCCCC-cc---ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC
Q 048118           93 NRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAH-TE---WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG  167 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~-~~---~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~  167 (303)
                      +..++.+..++.+..+|... ...+........ ..   .+..+...|-.....+..++.++.+..+|..+++.......
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL  267 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence            34677778888899998743 333322211100 00   00000011100123567778899999999998887665542


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-C-CeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118          168 HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-G-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       168 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                        .....+..  ++..+..++.++.+..+|..+++.+..... . ......... ++.+++.+.+|.++++|.++++++.
T Consensus       268 --~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          268 --GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             --CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             --CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEE
Confidence              23444444  356777788899999999999998876641 1 112222222 5667777778999999999998876


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      .......      ..            . ....  ..+..|.+++.||.|..|+
T Consensus       343 ~~~~~~~------~~------------~-~~~~--~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          343 QQKVDSS------GF------------Q-TEPV--AADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEECCTT------CB------------C-SCCE--EETTEEEEEBTTSCEEEEE
T ss_pred             EEecCCC------cc------------e-eCCE--EECCEEEEEeCCCEEEEEe
Confidence            5443100      00            0 0011  1256788899999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.42  E-value=4.6e-05  Score=62.89  Aligned_cols=141  Identities=12%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe
Q 048118           93 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV  172 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i  172 (303)
                      +..+..++.++.|..+|..+...+....   ....+.++...+++   .+..++.++.+..+|.. ++....+......+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~  179 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDGTEKWRFKT---KKAIYATPIVSEDG---TIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT  179 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTSCEEEEEEC---SSCCCSCCEECTTS---CEEEECTTSEEEEECTT-SCEEEEEECSSCCC
T ss_pred             CCEEEEEecCCEEEEEcCCCCEEEEEcC---CCceeeeeEEcCCC---EEEEEcCCCEEEEECCC-CCEeEEEecCCCce
Confidence            4456677788889999876433333221   22223444455443   46667888999999988 76665565555667


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118          173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      .++...+++..++..   +.+..+| .+++.+..... ...+.++...+++.+.+++.++.|..+|. +++.+.
T Consensus       180 ~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~  248 (330)
T 3hxj_A          180 SAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKW  248 (330)
T ss_dssp             SCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEE
T ss_pred             eeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeE
Confidence            778887788765544   7899999 77776666543 34566777888888777777889999985 444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.30  E-value=0.00039  Score=57.38  Aligned_cols=154  Identities=12%  Similarity=0.083  Sum_probs=94.1

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCC-----------------CccceEEEEEcC-CCCCCEEEEE
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA-----------------HTEWVSCVRFSP-NTLQPTIVSA  145 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~-~~~~~~~~~~  145 (303)
                      ..++++++++.++.++..++.|..|+..+.....+.....                 ....+..+++.+ ++   .+..+
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g---~l~v~   97 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN---QLYIV   97 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT---EEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC---cEEEE
Confidence            4467888898877788888999999875432222111000                 012367888887 43   45555


Q ss_pred             eCCCcEEEEECCCceeEEEE---cC-CCCCeeEEEECC-CCCEEEEEeC-----------------CCeEEEEeCCCCce
Q 048118          146 SWDRTVKVWNLSNCKLRATL---AG-HTGYVNTVAVSP-DGSLCASGGK-----------------DGVILLWDLAEGKR  203 (303)
Q Consensus       146 ~~dg~i~iwd~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~v~iwd~~~~~~  203 (303)
                      ...+.|..+|..+++.....   .+ .......+++.| +|+..++...                 ++.|..+|..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            55556888887655432211   11 113467899999 9987766432                 36788898876653


Q ss_pred             EEEecCCCeEEEEEEcCCCeEEEE--EcCCcEEEEeCCC
Q 048118          204 LYSLDAGAVIHALCFSPNRYWLCA--ATEQSIKIWDLES  240 (303)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~i~iwd~~~  240 (303)
                      ..........+.++++|++..+.+  ...+.|+.|++..
T Consensus       178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            222111123456899999864433  3467899999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.28  E-value=4.6e-05  Score=69.95  Aligned_cols=163  Identities=10%  Similarity=0.110  Sum_probs=102.2

Q ss_pred             EEEEeeCCCEEEEEeCCCc-------------------EEEEecCC-ceeeeeecCCCCc-------cceEEEEEcCCCC
Q 048118           86 SVAFSIDNRQIVSASRDRT-------------------IKLWNTLG-ECKYTIQEGDAHT-------EWVSCVRFSPNTL  138 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~~-------------------i~vw~~~~-~~~~~~~~~~~~~-------~~i~~~~~~~~~~  138 (303)
                      .+++++++.+++.+..++.                   |..+|..+ +..+..+.. .+.       ..........++.
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeeccCCc
Confidence            4678888888888877753                   88888753 334333321 111       1111111111221


Q ss_pred             -CCEEEEEeCCCcEEEEECCCceeEEEEcCCC-C--------------------------------------CeeEEEEC
Q 048118          139 -QPTIVSASWDRTVKVWNLSNCKLRATLAGHT-G--------------------------------------YVNTVAVS  178 (303)
Q Consensus       139 -~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--------------------------------------~i~~~~~~  178 (303)
                       ...++.++.+|.++++|..+++.+....-.. .                                      .-..++++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence             1257788999999999999988763321100 0                                      01126788


Q ss_pred             CCCCEEEEEeC---------------------------------------------CCeEEEEeCCCCceEEEecCCCeE
Q 048118          179 PDGSLCASGGK---------------------------------------------DGVILLWDLAEGKRLYSLDAGAVI  213 (303)
Q Consensus       179 ~~~~~l~~~~~---------------------------------------------d~~v~iwd~~~~~~~~~~~~~~~v  213 (303)
                      |+..++.+...                                             +|.|+.||+.+++.+.+.......
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~  477 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF  477 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc
Confidence            88777766532                                             378999999999988877544332


Q ss_pred             EEEEEc-CCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          214 HALCFS-PNRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       214 ~~~~~s-~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      ..-.+. .++.++.++.|+.++.||.++++++.+.+.
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            222233 345666667799999999999999877654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.27  E-value=0.0012  Score=54.52  Aligned_cols=251  Identities=10%  Similarity=0.046  Sum_probs=132.8

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC----ceecccCCEEEEEEee-C
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG----QFVGHTKDVLSVAFSI-D   92 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~h~~~i~~i~~~~-~   92 (303)
                      ...+++++++ +++.++..++.|..|+.......      .+......-.  ....++    ........+..+++.+ +
T Consensus        21 p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           21 PNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV------DFAYASPYWN--KAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             CCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE------EEEESCTTCC--HHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             ceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE------EEeccccccc--ccccccccchhccccCCCCceEEEcCCC
Confidence            4667788763 55677777888888876432110      0000000000  000000    0011123578899997 5


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeec-CC-CCccceEEEEEcC-CCCCCEEEEEeC-----------------CCcEE
Q 048118           93 NRQIVSASRDRTIKLWNTLGECKYTIQE-GD-AHTEWVSCVRFSP-NTLQPTIVSASW-----------------DRTVK  152 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~~~~~~~~~~-----------------dg~i~  152 (303)
                      +. |+.+...+.|..++..+.....+.. .. ........+++.+ ++  ...++-..                 ++.|.
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccCCCceEE
Confidence            55 4445555557788765332211211 01 1112356788888 65  23333211                 36788


Q ss_pred             EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCC---c-eEEEecCCCeEEEEEEcCCCeEEEE
Q 048118          153 VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEG---K-RLYSLDAGAVIHALCFSPNRYWLCA  227 (303)
Q Consensus       153 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~---~-~~~~~~~~~~v~~~~~s~~~~~l~~  227 (303)
                      .+|..+++....... ......++++|+++.|..+ +..++|.++++...   + .... .... ...+++.++|.+.++
T Consensus       169 ~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          169 KYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             EEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEECTTSCEEEE
T ss_pred             EEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEECCCCCEEEE
Confidence            888876654332221 2345679999999866544 56789999998742   1 1111 1222 677899998865544


Q ss_pred             E-c----------CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          228 A-T----------EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       228 ~-~----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      . .          .+.|..+|.. ++.+..+...-..     .           ...++.+.+ .++.++++....+.|.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-----~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-----A-----------GEHFEQIQE-HDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-----T-----------TSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred             ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-----c-----------cccceEEEE-eCCEEEEeecCCCceE
Confidence            3 3          3568888864 5555444321000     0           011233444 3566666666788898


Q ss_pred             EEecc
Q 048118          297 VWGIG  301 (303)
Q Consensus       297 ~w~~~  301 (303)
                      .+++.
T Consensus       308 ~~~~~  312 (322)
T 2fp8_A          308 ILVYD  312 (322)
T ss_dssp             EEEC-
T ss_pred             EEecc
Confidence            88874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.26  E-value=0.00097  Score=53.34  Aligned_cols=155  Identities=11%  Similarity=0.008  Sum_probs=94.2

Q ss_pred             CEEEEEEeeCCCEE-EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           83 DVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        83 ~i~~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      .+..+++++++..| ++-...+.|..++..+.....+..  ........++++|.+. ...++-...+.|.++++.....
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSC
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCC-eEEEEECCCCEEEEEEcCCCCE
Confidence            46789999866554 444556789999876543222221  1123467899988642 3444445567899999865433


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCe-EEEE-EcCCcEE
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRY-WLCA-ATEQSIK  234 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~-~~~~~i~  234 (303)
                      .............++++|++..|..+..   .+.|..+++..... ..+  ........+++++++. +.++ ...+.|.
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            2222222245688999996665544443   46888888764322 222  2224577899999753 3333 3467899


Q ss_pred             EEeCCCC
Q 048118          235 IWDLESK  241 (303)
Q Consensus       235 iwd~~~~  241 (303)
                      ++|....
T Consensus       193 ~~~~~g~  199 (267)
T 1npe_A          193 CLNPAQP  199 (267)
T ss_dssp             EEETTEE
T ss_pred             EEecCCC
Confidence            9998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.23  E-value=0.0011  Score=52.87  Aligned_cols=203  Identities=7%  Similarity=-0.028  Sum_probs=121.3

Q ss_pred             eeecccccccccc--eeeeecCCCCCcEEEEecC--CCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecc
Q 048118            5 LVLKGTMRAHTDM--VTAIATPIDNSDMIVTASR--DKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH   80 (303)
Q Consensus         5 ~~~~~~~~~h~~~--v~~v~~~~~~~~~~~t~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h   80 (303)
                      .+++.++ .|...  ...+.+++++ .++++.+.  ++.|.+.|...++...     ..          .+ +..     
T Consensus         9 ~~vv~~~-p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~-----~i----------~l-~~~-----   65 (266)
T 2iwa_A            9 VEVLNEF-PHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVEN-----IH----------KM-DDS-----   65 (266)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEE-----EE----------EC-CTT-----
T ss_pred             ceEEEEE-ECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEE-----EE----------ec-CCC-----
Confidence            3556555 35433  4689998763 55665553  6799999987654211     11          00 000     


Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                       .-...+++. .+.+.++.-.++.+.++|...... ..+....+  .. ..+  .+++. ..+ .+..++.|.++|..+.
T Consensus        66 -~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g-~gl--t~Dg~-~l~-vs~gs~~l~viD~~t~  136 (266)
T 2iwa_A           66 -YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DG-WGL--ATDGK-ILY-GSDGTSILYEIDPHTF  136 (266)
T ss_dssp             -CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SC-CEE--EECSS-SEE-EECSSSEEEEECTTTC
T ss_pred             -cceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--Ce-EEE--EECCC-EEE-EECCCCeEEEEECCCC
Confidence             011234444 234445555678999999764332 22222101  11 223  34442 234 4456889999999998


Q ss_pred             eeEEEEcCCC-----CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC--------------CeEEEEEEcC
Q 048118          160 KLRATLAGHT-----GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--------------AVIHALCFSP  220 (303)
Q Consensus       160 ~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~  220 (303)
                      +....+.-..     ...+.+.+. +++.++....++.|.+.|..+++.+..+...              ...+.++|+|
T Consensus       137 ~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~  215 (266)
T 2iwa_A          137 KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ  215 (266)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred             cEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence            8776665321     135677777 6766666656889999999999988877542              3568999999


Q ss_pred             CCe-EEEEE-cCCcEEEEeCCC
Q 048118          221 NRY-WLCAA-TEQSIKIWDLES  240 (303)
Q Consensus       221 ~~~-~l~~~-~~~~i~iwd~~~  240 (303)
                      ++. +++++ ..++++..++..
T Consensus       216 ~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          216 ENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCEEEEECCCCCeEEEEEEec
Confidence            864 33333 467788777643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.11  E-value=1.8e-05  Score=66.71  Aligned_cols=89  Identities=9%  Similarity=-0.066  Sum_probs=71.0

Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCC--------C
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAG--------A  211 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~--------~  211 (303)
                      .|.++|..+++.+.++.....+  .+.++|+++++.++.          .++.|.+||+.+++.+.++..+        .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999998888765555  799999999887775          3789999999999998887532        2


Q ss_pred             eEEEEEEcCCCeEEEEEc---CCcEEE--EeCCC
Q 048118          212 VIHALCFSPNRYWLCAAT---EQSIKI--WDLES  240 (303)
Q Consensus       212 ~v~~~~~s~~~~~l~~~~---~~~i~i--wd~~~  240 (303)
                      ....++++||+.++.++.   .+.+.+  +|..+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            355789999997776653   456888  99866

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.11  E-value=0.0011  Score=60.65  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             cEEEEECCCceeEEEEcC--CC-------CCeeEEEECCCCC---EEEEEeCCCeEEEEeCCCCceEEE
Q 048118          150 TVKVWNLSNCKLRATLAG--HT-------GYVNTVAVSPDGS---LCASGGKDGVILLWDLAEGKRLYS  206 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~~~~  206 (303)
                      .|..+|.++++.+..++.  |.       .+.....+..+|+   .++.++.+|.+.++|..+|+.+..
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence            499999999998777653  22       2222222223564   688899999999999999998743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.10  E-value=0.00027  Score=56.12  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=96.3

Q ss_pred             cceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeE--EEECCCCCEEEEEeCCCeEEEEeCCCCce
Q 048118          126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT--VAVSPDGSLCASGGKDGVILLWDLAEGKR  203 (303)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  203 (303)
                      .....+.|+.+   ....+.+.+|.|+++|+++++....+ - ......  +.+.. ++.....-.++.+.++|..+.+.
T Consensus        55 ~ftqGL~~~~~---~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           55 AFTQGLVFHQG---HFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             CCEEEEEEETT---EEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEE
T ss_pred             cccceEEEECC---EEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcE
Confidence            34577888742   46677788889999999999877766 2 223333  55543 34445556799999999999999


Q ss_pred             EEEecCCCeEEEEEEcCCCe-EEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCC
Q 048118          204 LYSLDAGAVIHALCFSPNRY-WLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVD  282 (303)
Q Consensus       204 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  282 (303)
                      +.++.....-..+++  ++. ++++..++.|+++|.++.+.+..+.+......               -...+.+.|. +
T Consensus       129 ~~ti~~~~eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---------------v~~lNeLe~~-d  190 (268)
T 3nok_A          129 ERTTRYSGEGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---------------VELINELECA-N  190 (268)
T ss_dssp             EEEEECSSCCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---------------CCCEEEEEEE-T
T ss_pred             EEEEeCCCceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---------------cccccccEEe-C
Confidence            988875443334443  443 34444578999999999988887765321100               0122445555 5


Q ss_pred             CCEEEEeecCCeEEEEec
Q 048118          283 GSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       283 ~~~l~~gs~Dg~v~~w~~  300 (303)
                      |...+....++.|.+-|.
T Consensus       191 G~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             TEEEEEETTCSEEEEECT
T ss_pred             CEEEEEECCCCeEEEEeC
Confidence            554444445666666654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.99  E-value=0.0011  Score=59.47  Aligned_cols=58  Identities=12%  Similarity=0.129  Sum_probs=40.4

Q ss_pred             cEEEEECCCceeEEEEcCC--C--------CCeeEEEECCCCC---EEEEEeCCCeEEEEeCCCCceEEEec
Q 048118          150 TVKVWNLSNCKLRATLAGH--T--------GYVNTVAVSPDGS---LCASGGKDGVILLWDLAEGKRLYSLD  208 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~--~--------~~i~~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~  208 (303)
                      .|..+|.++++.+..++..  .        .++. +...++|+   .++.++.+|.+.++|..+++.+....
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            5899999999887766532  1        1221 22224664   56778889999999999999877653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.96  E-value=0.001  Score=61.71  Aligned_cols=152  Identities=12%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             CEEEEEEe-eCCCEEEEEeC-CC----cEEEEecCCc-eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-----Cc
Q 048118           83 DVLSVAFS-IDNRQIVSASR-DR----TIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-----RT  150 (303)
Q Consensus        83 ~i~~i~~~-~~~~~l~t~~~-d~----~i~vw~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-----g~  150 (303)
                      .+...+|+ |+|++++-+.. +|    .|.++|+.+. ....    +.-......+.|+|++.  .|+....+     ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~~~~~~~~~~WspDg~--~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DKVSGTNGEIVWGPDHT--SLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CCEEEECSCCEECSSTT--EEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----ccccCceeeEEEecCCC--EEEEEEECCCCCCCE
Confidence            46678999 99998774432 22    4888898654 3111    00011123578999873  34444443     25


Q ss_pred             EEEEECCCcee--EEEEc-CCCCCeeEEEECCCCCEEEEEeC---CCeEEEEeCCCCc-eE--EEec--CCCeEEEEEEc
Q 048118          151 VKVWNLSNCKL--RATLA-GHTGYVNTVAVSPDGSLCASGGK---DGVILLWDLAEGK-RL--YSLD--AGAVIHALCFS  219 (303)
Q Consensus       151 i~iwd~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~-~~--~~~~--~~~~v~~~~~s  219 (303)
                      |+.+++.+.+.  ...+. ........+.|+|+|++|+..+.   ...|.++|+.++. ..  ..+.  ......+..|+
T Consensus       249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            77788876532  12222 22234567899999998876552   3478888987652 12  3332  22344556655


Q ss_pred             CCCeEEEEEcC-----CcEEEEeCCC
Q 048118          220 PNRYWLCAATE-----QSIKIWDLES  240 (303)
Q Consensus       220 ~~~~~l~~~~~-----~~i~iwd~~~  240 (303)
                      .++.++..+..     ..|+.+|+.+
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            55555555432     2577777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.90  E-value=0.0015  Score=51.78  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             cceEEEEEcCCCCCCEEEEEeCCC--cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCCCc
Q 048118          126 EWVSCVRFSPNTLQPTIVSASWDR--TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAEGK  202 (303)
Q Consensus       126 ~~i~~~~~~~~~~~~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~  202 (303)
                      .....+.|+ ++  ....+.+.+|  .|+.+|+++++....+.-.. ......+.+++..| ...-.++.+.++|..+.+
T Consensus        43 ~ftqGL~~~-~~--~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           43 AFTEGFFYR-NG--YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             CEEEEEEEE-TT--EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             cccceEEEE-CC--EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            345778888 33  3555666655  89999999999887775432 33333333344444 444568999999999999


Q ss_pred             eEEEecCCCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeee
Q 048118          203 RLYSLDAGAVIHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       203 ~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      .+.++.....-..++  +++..| .+...+.|+++|.++.+.+..+.+
T Consensus       119 ~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          119 QVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             EEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            998887544323444  344433 333467899999999988887765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.89  E-value=0.0055  Score=48.60  Aligned_cols=202  Identities=10%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      +.+-.+.+..++++|++..+++....++.|...|.. ..     ..+.          +.+.      + ....-.|++.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-----v~~~----------i~l~------g-~~D~EGIa~~   78 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-----LIRT----------IPLD------F-VKDLETIEYI   78 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-----EEEE----------EECS------S-CSSEEEEEEC
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-----EEEE----------EecC------C-CCChHHeEEe
Confidence            444446789999998765566656666666666654 11     1111          1110      0 1345678888


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCcee----eeee--c-CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC---ce
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECK----YTIQ--E-GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---CK  160 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~----~~~~--~-~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~---~~  160 (303)
                      +++.++++.-.++.+.++++.....    ....  . ....+.....++++|...  .+.++.......+|....   ..
T Consensus        79 ~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~--~L~va~E~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A           79 GDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH--TFWFFKEKNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             STTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT--EEEEEEESSSEEEEEEESTTCSS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC--EEEEEECcCCceEEEEcccccCC
Confidence            8887767665667788877543221    1111  0 112345578999999752  344444443444443321   11


Q ss_pred             eEEEEc-------CCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecCC----------CeEEEEEEcCCC
Q 048118          161 LRATLA-------GHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAG----------AVIHALCFSPNR  222 (303)
Q Consensus       161 ~~~~~~-------~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~  222 (303)
                      ....+.       .+...+.+++++|... +++....++.+.++|.. ++.+..+...          .....++|.++|
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            111111       1234578999999554 55666678899999976 4454444221          256789999999


Q ss_pred             eEEEEEcCCcEEEEeC
Q 048118          223 YWLCAATEQSIKIWDL  238 (303)
Q Consensus       223 ~~l~~~~~~~i~iwd~  238 (303)
                      .+..++..+.++.|.-
T Consensus       236 ~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          236 NIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             CEEEEETTTEEEEEEC
T ss_pred             CEEEEcCCceEEEEEe
Confidence            8888888777777753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.88  E-value=0.0039  Score=48.89  Aligned_cols=121  Identities=12%  Similarity=0.019  Sum_probs=81.2

Q ss_pred             ccceEEEEEcCCCCCCEEEEEeCC--CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCC
Q 048118          125 TEWVSCVRFSPNTLQPTIVSASWD--RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEG  201 (303)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~  201 (303)
                      ......+.|+++   ....+.+.+  +.|+.+|+.+++....+.-.. ......+.+.+. .....-.++.+.++|..+.
T Consensus        20 ~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           20 TAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             TCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred             ccccccEEEECC---EEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence            345678889863   345555554  489999999999887765432 223222223344 4455557899999999999


Q ss_pred             ceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118          202 KRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      +.+.++.....-..++.. .+.++++..++.|+++|.++.+.+..+.+.
T Consensus        96 ~~~~ti~~~~~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           96 TPRARFRYPGEGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             EEEEEEECSSCCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred             cEEEEEeCCCCceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence            999888765433445533 234444445778999999999888777653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.88  E-value=0.0071  Score=49.39  Aligned_cols=225  Identities=10%  Similarity=0.045  Sum_probs=115.9

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      ....+++++++ +++++-..++.|..|+....  .    ...            +       ...+.+..+++.+++.++
T Consensus        33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~--~----~~~------------~-------~~~~~p~gia~~~dG~l~   86 (306)
T 2p4o_A           33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGN--Q----QIH------------A-------TVEGKVSGLAFTSNGDLV   86 (306)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCC--E----EEE------------E-------ECSSEEEEEEECTTSCEE
T ss_pred             CcceEEECCCC-CEEEEeCCCCeEEEECCCCc--e----EEE------------E-------eCCCCceeEEEcCCCcEE
Confidence            45677888754 56777667778877765321  0    000            0       011346789999999866


Q ss_pred             EEEeCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-Ec-------
Q 048118           97 VSASRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LA-------  166 (303)
Q Consensus        97 ~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~-------  166 (303)
                      ++....+  .|..++........+... ........++..+.+  ..+++-..++.|..+|..+++.... ..       
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence            6554332  355555433222222111 111112334433332  2344444578899999765431111 10       


Q ss_pred             --CCCCCeeEEEECCCCCEEEE-EeCCCeEEEEeCCC-Cce--EEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCC
Q 048118          167 --GHTGYVNTVAVSPDGSLCAS-GGKDGVILLWDLAE-GKR--LYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLE  239 (303)
Q Consensus       167 --~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~  239 (303)
                        ........+  +|+++.|.. -+..++|..+++.. ++.  ...+........++++++|.+.++. ..+.|.++|..
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence              111233445  788876644 45678999999864 321  1111111233457788888654443 46789999875


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEc---CCCCEEEEeec
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS---VDGSTLFSGYT  291 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---p~~~~l~~gs~  291 (303)
                       +++.....+.                  ......++++|.   |+++.|.+++.
T Consensus       242 -G~~~~~~~~~------------------~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          242 -RSTTIIAQAE------------------QGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             -CCEEEEECGG------------------GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             -CCEEEEeecc------------------cccCCceEEEEecccCCCCEEEEECC
Confidence             4432110110                  001234678898   88777666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.81  E-value=0.0098  Score=48.96  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=114.6

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC-EE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR-QI   96 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~l   96 (303)
                      ..++.|++.+..++.+-...+.|..++..........                      .......+..+++.+.+. ++
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~----------------------~~~~l~~p~glavd~~~g~ly   94 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV----------------------VVSGLLSPDGLACDWLGEKLY   94 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE----------------------EEECCSCCCEEEEETTTTEEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE----------------------EcCCCCCccEEEEEcCCCeEE
Confidence            4466677654555555555666666665432100000                      000112345788886544 44


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCceeEEEEcCCCCCeeE
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNCKLRATLAGHTGYVNT  174 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~  174 (303)
                      .+-...+.|.+++..+.....+..  ........++++|..  ..+....  ..+.|...++............-..-..
T Consensus        95 ~~d~~~~~I~~~~~dG~~~~~l~~--~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           95 WTDSETNRIEVSNLDGSLRKVLFW--QELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEEe--CCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence            555566788888876543322221  122345788888854  2344444  3577888887543322222222345688


Q ss_pred             EEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeee
Q 048118          175 VAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       175 ~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      ++++|++..|..+ +..+.|..+|+.......... .......+++..++.+.+-...+.|..+|..+++....+.
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            9999976655444 567899999986433221122 2334556777655444454456889999987776555443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.74  E-value=0.0058  Score=54.97  Aligned_cols=58  Identities=12%  Similarity=0.128  Sum_probs=41.1

Q ss_pred             CcEEEEECCCceeEEEEcCCC----------CCeeEEEEC-CCC---CEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118          149 RTVKVWNLSNCKLRATLAGHT----------GYVNTVAVS-PDG---SLCASGGKDGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~  207 (303)
                      +.|..+|.++++.+..++...          .++. +... .+|   ..++.++.+|.+.++|.++++.+...
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            479999999998877665421          1121 2222 467   46777889999999999999987664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.74  E-value=0.013  Score=48.49  Aligned_cols=188  Identities=11%  Similarity=0.226  Sum_probs=107.7

Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCC----CCCC-E-EEEEeC--CCcEEEEECC--Ccee
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN----TLQP-T-IVSASW--DRTVKVWNLS--NCKL  161 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~-~-~~~~~~--dg~i~iwd~~--~~~~  161 (303)
                      ..++++.....+-+.+||+.+.....+..     ..++.+..-|+    +... . +++.-.  +..|.+|++.  +++ 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence            44567767777889999997665433321     22344443331    1111 2 233333  5789999763  333 


Q ss_pred             EEEEcC------CC-CCeeEEEE--CCC-CC-EEEEEeCCCeEEEEeCC-------CCceEEEecCCCeEEEEEEcCC-C
Q 048118          162 RATLAG------HT-GYVNTVAV--SPD-GS-LCASGGKDGVILLWDLA-------EGKRLYSLDAGAVIHALCFSPN-R  222 (303)
Q Consensus       162 ~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~v~iwd~~-------~~~~~~~~~~~~~v~~~~~s~~-~  222 (303)
                      ...+..      .. ..+..+++  +|. ++ ++++...+|.+..|++.       +.+.++++...+.+..+...+. +
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG  192 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence            333321      11 45666777  774 44 57778889999999983       3356778877888888888876 4


Q ss_pred             eEEEEEcCCcEEEEeCC-----CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee-cCCeE
Q 048118          223 YWLCAATEQSIKIWDLE-----SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY-TDGVI  295 (303)
Q Consensus       223 ~~l~~~~~~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs-~Dg~v  295 (303)
                      .++++-.+..|+.|+.+     +++++.....  .             .+...... ..+...++++ +|+++| .+++.
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~--g-------------~l~aDvEG-Lai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--R-------------HLTRDIEG-LTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--S-------------SBCSCEEE-EEEEECGGGCEEEEEEEGGGTEE
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecC--C-------------ccccCcce-EEEEecCCCCEEEEEEcCCCCEE
Confidence            55555566668888855     2233321110  0             01100111 1233356666 677666 57799


Q ss_pred             EEEecc
Q 048118          296 RVWGIG  301 (303)
Q Consensus       296 ~~w~~~  301 (303)
                      .+||..
T Consensus       257 ~Vydr~  262 (355)
T 3amr_A          257 AIYDRQ  262 (355)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.72  E-value=0.011  Score=54.86  Aligned_cols=194  Identities=8%  Similarity=0.031  Sum_probs=98.1

Q ss_pred             ceeeeecC-CCCCcEEEEecCCC----cEEEEEcccC-ccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           17 MVTAIATP-IDNSDMIVTASRDK----SIIVWHLTKE-EKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        17 ~v~~v~~~-~~~~~~~~t~s~d~----~i~iw~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      .+....|+ |++..+..+.+.+|    +|+++++..+ +....           .+           .   .....+.|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----------~~-----------~---~~~~~~~Ws  229 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----------KV-----------S---GTNGEIVWG  229 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----------CE-----------E---EECSCCEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----------cc-----------c---CceeeEEEe
Confidence            46677899 87653333433333    4888888654 31100           00           0   001257799


Q ss_pred             eCCCEEEEEeCCC-----cEEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCCc--
Q 048118           91 IDNRQIVSASRDR-----TIKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSNC--  159 (303)
Q Consensus        91 ~~~~~l~t~~~d~-----~i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~~--  159 (303)
                      |+++.|+....|.     .|.++++.+...  ..+.. .........+.|+|++.. .+++..  ....|.++|+.++  
T Consensus       230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~l~~~d~~~~~~  307 (751)
T 2xe4_A          230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYE-EHNPLFSAFMYKAADTNT-LCIGSQSPETAEVHLLDLRKGNA  307 (751)
T ss_dssp             SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEE-CCCTTCEEEEEECTTSSE-EEEEEECSSCEEEEEEESSSCTT
T ss_pred             cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEe-cCCCceEEEEEECCCCCE-EEEEecCCCCceEEEEECCCCCC
Confidence            9998777666552     466666644221  11111 122234567889998732 233332  2346888888764  


Q ss_pred             ee-EEEEc-CCCCCeeEEEECCCCCEE-EEEeCC----CeEEEEeCCCC-c--e-EEEecCCCeEEEEEEcCCCeEEEEE
Q 048118          160 KL-RATLA-GHTGYVNTVAVSPDGSLC-ASGGKD----GVILLWDLAEG-K--R-LYSLDAGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       160 ~~-~~~~~-~~~~~i~~~~~~~~~~~l-~~~~~d----~~v~iwd~~~~-~--~-~~~~~~~~~v~~~~~s~~~~~l~~~  228 (303)
                      +. ...+. ...+...++.|+. +..| +.+..+    ..|..+|+.++ +  . +..-.....+..+.+..+..++...
T Consensus       308 ~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~  386 (751)
T 2xe4_A          308 HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR  386 (751)
T ss_dssp             CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE
T ss_pred             CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE
Confidence            22 02332 2334556666544 5544 444333    36777787642 2  2 2211222245666665332333334


Q ss_pred             cCC--cEEEEeC
Q 048118          229 TEQ--SIKIWDL  238 (303)
Q Consensus       229 ~~~--~i~iwd~  238 (303)
                      .++  .|+++|+
T Consensus       387 ~~g~~~l~~~dl  398 (751)
T 2xe4_A          387 RAGLTRIWTMMA  398 (751)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             eCCEEEEEEEec
Confidence            455  4677775

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.67  E-value=0.037  Score=51.62  Aligned_cols=158  Identities=11%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec----CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE----GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      ...|.++...++|.+.+ |+.++-|..++...........    .......|.++...+++   .+-.|+.++-|..|+.
T Consensus       309 ~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g---~lWiGt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK---NLWIGTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS---CEEEEESSSCEEEECT
T ss_pred             CCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC---CEEEEECCCCeEEEcC
Confidence            35688888888887554 6666778888754322111111    01123458888887764   3556777778999998


Q ss_pred             CCceeEEEEcC--------CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-----CCCeEEEEEEcCCCe
Q 048118          157 SNCKLRATLAG--------HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-----AGAVIHALCFSPNRY  223 (303)
Q Consensus       157 ~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s~~~~  223 (303)
                      .+++.......        ....|.++...++++.|-.|+.++-+..+|..+++...-..     ....|.++...+++.
T Consensus       385 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~  464 (795)
T 4a2l_A          385 ITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN  464 (795)
T ss_dssp             TTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC
T ss_pred             CCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC
Confidence            76654332211        13568899888888845567777789999988765432211     235688888888777


Q ss_pred             EEEEEcCCcEEEEeCCCCce
Q 048118          224 WLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       224 ~l~~~~~~~i~iwd~~~~~~  243 (303)
                      +.+++. +.+.+||.++++.
T Consensus       465 lwigt~-~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          465 LWLGTL-SALVRFNPEQRSF  483 (795)
T ss_dssp             EEEEES-SCEEEEETTTTEE
T ss_pred             EEEEec-CceeEEeCCCCeE
Confidence            655555 6799999877654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.67  E-value=0.02  Score=48.52  Aligned_cols=162  Identities=12%  Similarity=0.021  Sum_probs=93.2

Q ss_pred             EEEEEEeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-CcEEEEECCCcee
Q 048118           84 VLSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-RTVKVWNLSNCKL  161 (303)
Q Consensus        84 i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-g~i~iwd~~~~~~  161 (303)
                      ...+++.+.+.. +++-...+.|.+.+..+.....+..  ........++++|... ..+++-... +.|..+++.....
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSC
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCC-eEEEeccCCCCEEEEEeCCCCCc
Confidence            356778875544 4454556778887776543322221  1223457888988642 223333333 6788888765433


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEE-EEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCA-SGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLE  239 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  239 (303)
                      .......-.....++++|++..|. +-+..+.|..+|+........+. .......+++..+..+.+-...+.|..+|..
T Consensus       238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~  317 (386)
T 3v65_B          238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKF  317 (386)
T ss_dssp             EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECC
Confidence            332333334568899998666554 44567889999986543322222 2234566777544444444457789999866


Q ss_pred             CCceeeeee
Q 048118          240 SKSIVEDLK  248 (303)
Q Consensus       240 ~~~~~~~~~  248 (303)
                      +++....+.
T Consensus       318 ~G~~~~~i~  326 (386)
T 3v65_B          318 TGKNQEIIR  326 (386)
T ss_dssp             TCCSCEEEE
T ss_pred             CCcceEEEc
Confidence            665554443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.62  E-value=0.021  Score=47.62  Aligned_cols=162  Identities=12%  Similarity=0.010  Sum_probs=93.0

Q ss_pred             CEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-CcEEEEECCCce
Q 048118           83 DVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-RTVKVWNLSNCK  160 (303)
Q Consensus        83 ~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-g~i~iwd~~~~~  160 (303)
                      ....+++.+.+. +..+-...+.|.+.+..+.....+..  ..-.....++++|... ..+.+-... +.|..+++....
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~l~~P~~iavdp~~g-~ly~td~~~~~~I~r~~~dG~~  193 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSG  193 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--TTCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCS
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--CCCCCcceEEEecCcC-eEEEeccCCCCEEEEEeCCCCC
Confidence            345788887554 44555556788888876543322221  1223457889998642 233333333 778888876433


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEE-EEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCA-SGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  238 (303)
                      ........-.....++++|++..|. +-+..++|..+|+........+. .......+++..+..+.+-...+.|..+|.
T Consensus       194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEc
Confidence            2221222234568899998666554 44457899999987543222222 123455677754444444445778888886


Q ss_pred             CCCceeeee
Q 048118          239 ESKSIVEDL  247 (303)
Q Consensus       239 ~~~~~~~~~  247 (303)
                      .+++....+
T Consensus       274 ~~G~~~~~i  282 (349)
T 3v64_C          274 FTGKNQEII  282 (349)
T ss_dssp             TTCCSCEEE
T ss_pred             cCCCccEEe
Confidence            566554444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.61  E-value=0.011  Score=53.86  Aligned_cols=75  Identities=7%  Similarity=0.144  Sum_probs=44.0

Q ss_pred             EEEEeeCCCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CC-----CcEEEEECCC
Q 048118           86 SVAFSIDNRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WD-----RTVKVWNLSN  158 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~d-----g~i~iwd~~~  158 (303)
                      ++++..++.+++.|+. +..+.+||............. ....-.++...+++  ..++.|+ .+     ..+.+||..+
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~-~~R~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-SCCSSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC-ccccccceEEecCC--eEEEEeCcccCCcccccceEeCCCC
Confidence            4566788999998884 457999997654332221111 11111234444454  3566666 34     5689999987


Q ss_pred             ceeEE
Q 048118          159 CKLRA  163 (303)
Q Consensus       159 ~~~~~  163 (303)
                      ++...
T Consensus       324 ~~W~~  328 (656)
T 1k3i_A          324 KTWTS  328 (656)
T ss_dssp             TEEEE
T ss_pred             Cccee
Confidence            76443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.59  E-value=0.027  Score=47.97  Aligned_cols=163  Identities=13%  Similarity=0.014  Sum_probs=97.5

Q ss_pred             CCEEEEEEeeC-CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe--CCCcEEEEECCC
Q 048118           82 KDVLSVAFSID-NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS--WDRTVKVWNLSN  158 (303)
Q Consensus        82 ~~i~~i~~~~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~dg~i~iwd~~~  158 (303)
                      ..+..+++.+. +.+..+-...+.|.+.+..+.....+...  .-.....++++|..  ..+....  ..+.|...++..
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~--g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTT--TEEEEEECSSSCCEEEEETTS
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEeccc--CeEEEEeCCCCCEEEEEeCCC
Confidence            35678888874 44455555667888888765433333221  12235788999864  2344333  247888888865


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEec---CCCeEEEEEEcCCCeEEEEEcCCcEE
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLD---AGAVIHALCFSPNRYWLCAATEQSIK  234 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~i~  234 (303)
                      ..........-.....++++|++..|..+ +..++|..+|+..........   .-.....+++..+..+.+-...+.|.
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~  314 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF  314 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEE
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEE
Confidence            44333333333567889999877766555 457899999986543322111   12334566665444444444568899


Q ss_pred             EEeCCCCceeeeee
Q 048118          235 IWDLESKSIVEDLK  248 (303)
Q Consensus       235 iwd~~~~~~~~~~~  248 (303)
                      .+|..+++.+..+.
T Consensus       315 ~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          315 SANRLTGSDVNLLA  328 (400)
T ss_dssp             EEESSSCCCCEEEE
T ss_pred             EEEcCCCCceEEEe
Confidence            99977776555443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.58  E-value=0.019  Score=47.11  Aligned_cols=158  Identities=9%  Similarity=0.079  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE-EcC----CCC--CeeEEEE---CCCCCEEEEEe---------
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAG----HTG--YVNTVAV---SPDGSLCASGG---------  188 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~--~i~~~~~---~~~~~~l~~~~---------  188 (303)
                      ..+++|++.. ....++.-..+.|..||...+..... +.+    ...  .+..+.+   .|+++++++..         
T Consensus        15 PE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            3467888753 22344444789999999875543332 222    111  3578999   68887777543         


Q ss_pred             ----CCCeEEEEeCC---CCceEEEecC--------------CCeEEEEEEcCCCeEEE-EEcC-CcEEEEeCCCCceee
Q 048118          189 ----KDGVILLWDLA---EGKRLYSLDA--------------GAVIHALCFSPNRYWLC-AATE-QSIKIWDLESKSIVE  245 (303)
Q Consensus       189 ----~d~~v~iwd~~---~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~-~~~~-~~i~iwd~~~~~~~~  245 (303)
                          .+..|..+|+.   +++.+.....              ....+.++..++|...+ .+.. +.|...+....... 
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence                26789999999   7776655432              12488999999986554 5556 77887776544221 


Q ss_pred             eeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          246 DLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ......       ..       .......+.|+++|++.+|++...+|.+..+|+.
T Consensus       173 ~~~~~~-------~~-------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          173 TFAWES-------GN-------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEECC-------CC-------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeeecC-------CC-------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            111100       00       0011223568999999988888779999999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.57  E-value=0.023  Score=46.65  Aligned_cols=206  Identities=15%  Similarity=0.075  Sum_probs=113.6

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC-EE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR-QI   96 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~l   96 (303)
                      ...+.|++.+..++++-...+.|..+++........ .           . ..+.      ..-..+..+++.+.+. +.
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~-----------~-~~~~------~~~~~p~glavd~~~~~ly   92 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-Y-----------D-TVIS------RDIQAPDGLAVDWIHSNIY   92 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC---------C-----------E-EEEC------SSCSCCCEEEEETTTTEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-c-----------E-EEEe------CCCCCcCEEEEeecCCeEE
Confidence            456777766555666666667777777643100000 0           0 0000      0112345788886554 44


Q ss_pred             EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-C-CcEEEEECCCceeEEEE-cCCCCCee
Q 048118           97 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-D-RTVKVWNLSNCKLRATL-AGHTGYVN  173 (303)
Q Consensus        97 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-d-g~i~iwd~~~~~~~~~~-~~~~~~i~  173 (303)
                      ++-...+.|.+.+..+.....+...  .-.....++++|...  .+..... . +.|..+++.... ...+ ...-....
T Consensus        93 ~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g--~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~  167 (316)
T 1ijq_A           93 WTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPN  167 (316)
T ss_dssp             EEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEE
T ss_pred             EEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCC--EEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCce
Confidence            5555678899988765433222221  123457888988542  3433333 2 678888875433 3333 22234567


Q ss_pred             EEEECCCCCEEEEE-eCCCeEEEEeCCCCce--EEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeee
Q 048118          174 TVAVSPDGSLCASG-GKDGVILLWDLAEGKR--LYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       174 ~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  247 (303)
                      .++++|++..|..+ +..++|..+|+.....  +.... .......+++..+..+.+-...+.|..+|..+++.+..+
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            89999877666444 4577999999874322  22211 123455677754433444445678999998766655444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=0.0099  Score=51.20  Aligned_cols=152  Identities=9%  Similarity=0.101  Sum_probs=89.4

Q ss_pred             eEEEEEcC-CCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeC-CC----eEEEEeCCCC
Q 048118          128 VSCVRFSP-NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGK-DG----VILLWDLAEG  201 (303)
Q Consensus       128 i~~~~~~~-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~----~v~iwd~~~~  201 (303)
                      ...++++| +.  ..+..+...+.|+.+|+.+++...... .......++++++++.|.++.. .+    .+.+.+....
T Consensus       139 P~~lavdp~~~--g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          139 AVWLSFDPKNH--NHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCEEEEETTEE--EEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCEEEECCCCC--CeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            45788887 33  234444444889999998766544333 3456788999999996655543 22    3444443221


Q ss_pred             ce-EEEecCCCeEEEEEEcC-CCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEE
Q 048118          202 KR-LYSLDAGAVIHALCFSP-NRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLN  278 (303)
Q Consensus       202 ~~-~~~~~~~~~v~~~~~s~-~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (303)
                      .. ...+........++++| ++.++++. ..++|+.++...+........                  . .......++
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~------------------~-~~~~P~gia  276 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI------------------Q-DSGWEFHIQ  276 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC------------------S-SSSCCEEEE
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc------------------C-CCCcceeEE
Confidence            11 11222223345678899 66655544 467899999876543211110                  0 011235689


Q ss_pred             EcCCCCE-EEEeecCCeEEEEecc
Q 048118          279 WSVDGST-LFSGYTDGVIRVWGIG  301 (303)
Q Consensus       279 ~sp~~~~-l~~gs~Dg~v~~w~~~  301 (303)
                      |+|++++ +++-...+.|..++.+
T Consensus       277 ~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          277 FHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EcCCCCEEEEEECCCCEEEEEeCC
Confidence            9999994 4555677888887753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.45  E-value=0.046  Score=47.08  Aligned_cols=152  Identities=14%  Similarity=0.183  Sum_probs=86.1

Q ss_pred             CCEEEEEEeeC--CCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC---C-cEEEEE
Q 048118           82 KDVLSVAFSID--NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD---R-TVKVWN  155 (303)
Q Consensus        82 ~~i~~i~~~~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d---g-~i~iwd  155 (303)
                      .....++|+|+  ...|..+...+.|+.++........+..   .......+++++++.  .+++-...   . .+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence            34678999984  3445445444889999875443333221   223467899999863  33333211   1 133333


Q ss_pred             CCCcee-EEEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEEE---ecCCCeEEEEEEcCCCeEEEEE--
Q 048118          156 LSNCKL-RATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLYS---LDAGAVIHALCFSPNRYWLCAA--  228 (303)
Q Consensus       156 ~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~--  228 (303)
                      ...... ...+. .......++++| ++.++++-..+++|+.+|..++.....   ......-..++|+|++..|..+  
T Consensus       214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            221111 11121 123456688999 677666666788999999886654222   2222223469999998643333  


Q ss_pred             cCCcEEEEeCC
Q 048118          229 TEQSIKIWDLE  239 (303)
Q Consensus       229 ~~~~i~iwd~~  239 (303)
                      ..+.|+.++..
T Consensus       293 ~~~~I~~~~~d  303 (433)
T 4hw6_A          293 GKHCIYRVDYN  303 (433)
T ss_dssp             TTTEEEEEEBC
T ss_pred             CCCEEEEEeCC
Confidence            46789998765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.011  Score=51.02  Aligned_cols=150  Identities=11%  Similarity=0.205  Sum_probs=89.9

Q ss_pred             CEEEEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-CC----cEEEEEC
Q 048118           83 DVLSVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-DR----TVKVWNL  156 (303)
Q Consensus        83 ~i~~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-dg----~i~iwd~  156 (303)
                      ....++++| ++..|..+...+.|+.+|..+.....+..   .......+++++++  ..+..+.. ++    .+..++.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G--~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEA--DSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTS--SEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCC--CEEEEEeCCCCcccceEEEEeC
Confidence            467899997 35555555555788888876543333322   22346789999876  33443333 22    2333443


Q ss_pred             CCceeE--EEEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCce--EEEecCCCeEEEEEEcCCCeEEEEE--c
Q 048118          157 SNCKLR--ATLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKR--LYSLDAGAVIHALCFSPNRYWLCAA--T  229 (303)
Q Consensus       157 ~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~--~  229 (303)
                      . +...  ..+.. ......++++| ++.++++-...++|..++...+..  +.........+.++|+|++.+|..+  .
T Consensus       213 ~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          213 E-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             G-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             C-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            2 2211  22221 23456788999 677766666788999999876654  2222223456789999998744333  4


Q ss_pred             CCcEEEEeCC
Q 048118          230 EQSIKIWDLE  239 (303)
Q Consensus       230 ~~~i~iwd~~  239 (303)
                      .+.|+.++.+
T Consensus       291 ~~~I~~~~~d  300 (430)
T 3tc9_A          291 QHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            6789887764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.41  E-value=0.037  Score=45.08  Aligned_cols=191  Identities=13%  Similarity=0.062  Sum_probs=106.0

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCC-cEEEEECCCce
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDR-TVKVWNLSNCK  160 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg-~i~iwd~~~~~  160 (303)
                      ....++|++++.++++-..++.|..|+..+....... .   ......+++.+++.  .+++.. .++ .|..+|..+++
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~---~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-V---EGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-C---SSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTSC
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-C---CCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCCCe
Confidence            4568999999887777667888999987654322221 1   13477899998862  344332 222 46667776766


Q ss_pred             eEEEEcC-CCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eEEEe--------c--CCCeEEEEEEcCCCeEEE--
Q 048118          161 LRATLAG-HTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSL--------D--AGAVIHALCFSPNRYWLC--  226 (303)
Q Consensus       161 ~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~--------~--~~~~v~~~~~s~~~~~l~--  226 (303)
                      ....... .......++..+++..+++...++.|.++|...++ .+...        .  .....+.+  ++++..+.  
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred             EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence            5432221 12233455555655555555568899999986543 22110        0  11234445  66664333  


Q ss_pred             EEcCCcEEEEeCCC-CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          227 AATEQSIKIWDLES-KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       227 ~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      -...+.|+.|++.. +++ .......              ..    .....+++.++|.+.++....+.|.+++.
T Consensus       185 d~~~~~I~~~~~~~~g~~-~~~~~~~--------------~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKP-GEPEIFV--------------EQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCB-CCCEEEE--------------ES----CCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             eCCCCEEEEEEeCCCCCC-CccEEEe--------------cc----CCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            33467899999864 221 1110000              00    11234667777776666666677777764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.38  E-value=0.0044  Score=56.66  Aligned_cols=163  Identities=10%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             EEEEeeCCCEEEEEeCCC-------------------cEEEEecCC-ceeeeeecCCCCc-------cceEEEEEcCCCC
Q 048118           86 SVAFSIDNRQIVSASRDR-------------------TIKLWNTLG-ECKYTIQEGDAHT-------EWVSCVRFSPNTL  138 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~~d~-------------------~i~vw~~~~-~~~~~~~~~~~~~-------~~i~~~~~~~~~~  138 (303)
                      .+++.++..+++.+..++                   .|..+|..+ +..+..+.. .|.       .+.....+..++.
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEeccCCc
Confidence            367788878888777665                   377777643 333333321 111       1111111112221


Q ss_pred             -CCEEEEEeCCCcEEEEECCCceeEEEEcCCC------------CC------------------------eeEEEECCCC
Q 048118          139 -QPTIVSASWDRTVKVWNLSNCKLRATLAGHT------------GY------------------------VNTVAVSPDG  181 (303)
Q Consensus       139 -~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~------------------------i~~~~~~~~~  181 (303)
                       ...++.++.+|.++++|..+++.+.......            .+                        -..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence             1257888999999999999988764322110            00                        0125677776


Q ss_pred             CEEEEE------------------------------------eCCCeEEEEeCCCCceEEEecCCCeEEEEEEc-CCCeE
Q 048118          182 SLCASG------------------------------------GKDGVILLWDLAEGKRLYSLDAGAVIHALCFS-PNRYW  224 (303)
Q Consensus       182 ~~l~~~------------------------------------~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s-~~~~~  224 (303)
                      ..+.+.                                    ..+|.|..||+.+++.+.+...........+. .++.+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v  472 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV  472 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEE
Confidence            655431                                    12488999999999988776543322221222 35566


Q ss_pred             EEEEcCCcEEEEeCCCCceeeeeee
Q 048118          225 LCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      ++++.++.++.||.++++++..++.
T Consensus       473 f~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          473 FQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCcccchhhhhhcChhheEecC
Confidence            6677799999999999999877664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.36  E-value=0.052  Score=45.90  Aligned_cols=157  Identities=13%  Similarity=-0.016  Sum_probs=92.3

Q ss_pred             CCEEEEEEeeCCCEE-EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      ..+..++|++....| .+-...+.|..++..+.....+...  .......+++++.. ....++-...+.|.+.++....
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~--~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST--GLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS--SCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCS
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC--CCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCc
Confidence            356789999765544 4445667788888765432222211  11123457777643 2234444556788888876544


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEE-eCC-CeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEE-EcCCcEEE
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASG-GKD-GVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCA-ATEQSIKI  235 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~-~~~~~i~i  235 (303)
                      ....+.........++++|.+..|..+ ... +.|...++.......... .-...+.++++|++ .+..+ +..+.|+.
T Consensus       193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence            333333334567889999876655444 344 788888886543322222 23457789999764 33333 34678999


Q ss_pred             EeCCCC
Q 048118          236 WDLESK  241 (303)
Q Consensus       236 wd~~~~  241 (303)
                      +|+...
T Consensus       273 ~d~dG~  278 (386)
T 3v65_B          273 ANLDGS  278 (386)
T ss_dssp             ECTTSC
T ss_pred             EeCCCC
Confidence            998643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.33  E-value=0.063  Score=48.11  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             CCeEEEEeCCCCceEEEecCCCeEEE-EEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          190 DGVILLWDLAEGKRLYSLDAGAVIHA-LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       190 d~~v~iwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      +|.|..||+.+++.+.+......+.. .....++.++.++.|+.++.||.++++++.+.+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            68899999999998877643322211 1111356777777899999999999999887664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.31  E-value=0.0029  Score=58.15  Aligned_cols=161  Identities=14%  Similarity=0.030  Sum_probs=88.0

Q ss_pred             EEEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE-eCCCcEEEEECCCceeE
Q 048118           85 LSVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA-SWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        85 ~~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~dg~i~iwd~~~~~~~  162 (303)
                      ..|++.+.+ .++++-...+.|.+.+..+.....+...  .......++++|.... ++++- +..+.|..+++......
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~--~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~~~  532 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--QGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIY  532 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC--SSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCCCC
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC--CCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCCee
Confidence            456777543 4444445567888888765433222211  1122456778875422 22222 22367887776543222


Q ss_pred             EEEcCCCCCeeEEEECCCCC-EEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEEcCCcEEEEeC
Q 048118          163 ATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAATEQSIKIWDL  238 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  238 (303)
                      ..+...-.....|+++|++. ++.+-+..++|.++|+........+..   ......+++..+..+++....+.|..+|.
T Consensus       533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence            22222223456899998755 445555678999999864332211111   12223455555544444445688999998


Q ss_pred             CCCceeeeee
Q 048118          239 ESKSIVEDLK  248 (303)
Q Consensus       239 ~~~~~~~~~~  248 (303)
                      .+++.+..+.
T Consensus       613 ~~G~~~~~i~  622 (699)
T 1n7d_A          613 LTGSDVNLLA  622 (699)
T ss_dssp             TTEEEEECCC
T ss_pred             cCCCceEEee
Confidence            8887766654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.30  E-value=0.031  Score=47.45  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=86.0

Q ss_pred             CCCcEEEEECCCceeEEEEcCC----CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------eEEEec--
Q 048118          147 WDRTVKVWNLSNCKLRATLAGH----TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK------------RLYSLD--  208 (303)
Q Consensus       147 ~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------~~~~~~--  208 (303)
                      .++.||..++......+.+.-.    -..+..+..+|+|.+||..+ +..|.|..+..+.            ..+.+.  
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            3466777776643333333322    23578899999999998886 4689998887321            112221  


Q ss_pred             -----CCCeEEEEEEcCC----CeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEE
Q 048118          209 -----AGAVIHALCFSPN----RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW  279 (303)
Q Consensus       209 -----~~~~v~~~~~s~~----~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (303)
                           ...+|.++.|+|-    ..+++..+|+.|++||+........   .++..     .  ..+.......-+.+++|
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~-----~--~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKP-----N--NSFGLDARVNDITDLEF  187 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCC-----C--SEEESCSSCCCEEEEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhcc-----c--cccCCCcccceEEEEEE
Confidence                 2467999999995    4677888999999999976332111   11100     0  00111112244678999


Q ss_pred             cCCCCEEEE--eecCCeEEE
Q 048118          280 SVDGSTLFS--GYTDGVIRV  297 (303)
Q Consensus       280 sp~~~~l~~--gs~Dg~v~~  297 (303)
                      +.++-.|..  ....|.|+.
T Consensus       188 g~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEE
Confidence            998876666  447788754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.30  E-value=0.11  Score=48.33  Aligned_cols=156  Identities=8%  Similarity=0.085  Sum_probs=99.5

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC------CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ..|.++...++|.+.+ |..++-|..|+............      ......|.++...+++  ..+-.|+.++-+..||
T Consensus       357 ~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILH  433 (795)
T ss_dssp             SSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEE
T ss_pred             CeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEe
Confidence            4688888888776554 66776788888754322111111      1123568888877654  2256677777799999


Q ss_pred             CCCceeEEEEc----CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-------CCCeEEEEEEcCCCeE
Q 048118          156 LSNCKLRATLA----GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-------AGAVIHALCFSPNRYW  224 (303)
Q Consensus       156 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~  224 (303)
                      ..+++......    .....|.++...+++++.+.. . +.+..||..+++......       ....|.++...+++.+
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            88766543221    123578899988888766544 3 458889987664322111       1256888988888865


Q ss_pred             EEEEcCCcEEEEeCCCCce
Q 048118          225 LCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~~~~  243 (303)
                      .+++. +.|..||.++++.
T Consensus       512 Wigt~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          512 WIGGE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             EEEES-SCEEEEEEETTEE
T ss_pred             EEEeC-CceEEEeCCCCeE
Confidence            55555 6799999876654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.24  E-value=0.13  Score=47.86  Aligned_cols=161  Identities=14%  Similarity=0.054  Sum_probs=95.3

Q ss_pred             CEEEEEEeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC--CCcEEEEECCCc
Q 048118           83 DVLSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--DRTVKVWNLSNC  159 (303)
Q Consensus        83 ~i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--dg~i~iwd~~~~  159 (303)
                      .+..|++.+.+.. +++-...+.|.+.++.+.....+...  .......|+++|..  ..|....+  .+.|...++...
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~--g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSC
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCC--CCEEEecCCCCCeEEEEecCCC
Confidence            4567888877654 44555667888888876544333221  12336789998864  23444432  367888888654


Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAATEQSIKI  235 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~i  235 (303)
                      .....+...-.....|++++.+..|..+ ...++|...++........+..   -.....+++..+..+++-...+.|..
T Consensus       548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS  627 (791)
T ss_dssp             CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEE
Confidence            4433333333567899999866666554 4567899999865443222221   12344666654433333345678888


Q ss_pred             EeCCCCceeeee
Q 048118          236 WDLESKSIVEDL  247 (303)
Q Consensus       236 wd~~~~~~~~~~  247 (303)
                      .|..+++.+..+
T Consensus       628 ~dk~tG~~~~~l  639 (791)
T 3m0c_C          628 ANRLTGSDVNLL  639 (791)
T ss_dssp             EETTTCCCCEEE
T ss_pred             EeCCCCcceEEe
Confidence            887666544433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.13  Score=47.71  Aligned_cols=156  Identities=11%  Similarity=0.106  Sum_probs=96.8

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      ..|.++...++|.+.+ |..++-|..++.......... ........|.++...+++   .+-.|+.++-+..++..+++
T Consensus       363 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG---NLWFGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             SCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS---CEEEEETTEEEEEECSSSCE
T ss_pred             cceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC---CEEEEeccCCEEEEcCCCCc
Confidence            4688888877776554 555566888886432211111 011233568888877654   35557776778889887665


Q ss_pred             eEEEEc--CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-C-----CCeEEEEEEcCCCeEEEEEcCCc
Q 048118          161 LRATLA--GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-A-----GAVIHALCFSPNRYWLCAATEQS  232 (303)
Q Consensus       161 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~-----~~~v~~~~~s~~~~~l~~~~~~~  232 (303)
                      ......  .....|.++...+++.+.+ |+. +.+..+|..+++...... .     ...+.++...+++.+.+++.++-
T Consensus       439 ~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          439 FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence            433211  1345788898888776554 444 568889987654322211 1     35788998888887666666566


Q ss_pred             EEEEeCCCCce
Q 048118          233 IKIWDLESKSI  243 (303)
Q Consensus       233 i~iwd~~~~~~  243 (303)
                      |..||.++++.
T Consensus       517 l~~~~~~~~~~  527 (781)
T 3v9f_A          517 VGIYTPDMQLV  527 (781)
T ss_dssp             EEEECTTCCEE
T ss_pred             EEEEeCCCCeE
Confidence            88899876543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.22  E-value=0.053  Score=42.93  Aligned_cols=204  Identities=10%  Similarity=0.106  Sum_probs=114.9

Q ss_pred             cccCCEEEEEEeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           79 GHTKDVLSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      +-.+.+-.++++|++.. +++...++.|...|..+.....+... . ......+++.+++  .++++.-.++.+.++++.
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~-g-~~D~EGIa~~~~g--~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD-F-VKDLETIEYIGDN--QFVISDERDYAIYVISLT   99 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS-S-CSSEEEEEECSTT--EEEEEETTTTEEEEEEEC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC-C-CCChHHeEEeCCC--EEEEEECCCCcEEEEEcC
Confidence            33457889999997664 44566777777778765433333221 1 1235567777654  344555566788888775


Q ss_pred             Cce---eEEEEc------CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCC---CceEEEec--------CCCeEEEEE
Q 048118          158 NCK---LRATLA------GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAE---GKRLYSLD--------AGAVIHALC  217 (303)
Q Consensus       158 ~~~---~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~--------~~~~v~~~~  217 (303)
                      ...   ......      ..+.....++++|.++.|.++.+.....+|.+..   ...+....        .-....+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            433   122221      1234568999999987776666654445554431   11111110        112357889


Q ss_pred             EcCC-CeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeE
Q 048118          218 FSPN-RYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI  295 (303)
Q Consensus       218 ~s~~-~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v  295 (303)
                      ++|. +.+++.+ ....|..+|.+ ++++..+........           +.......-.++|.|+|.+.++ |+-+.+
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~-----------l~~~~~qpEGia~d~~G~lyIv-sE~n~~  246 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRG-----------LSHNIKQAEGVAMDASGNIYIV-SEPNRF  246 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGG-----------CSSCCCSEEEEEECTTCCEEEE-ETTTEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCC-----------cccccCCCCeeEECCCCCEEEE-cCCceE
Confidence            9997 4555555 46778999976 446655544321110           0001112345889999985555 666666


Q ss_pred             EEEe
Q 048118          296 RVWG  299 (303)
Q Consensus       296 ~~w~  299 (303)
                      ..|.
T Consensus       247 y~f~  250 (255)
T 3qqz_A          247 YRFT  250 (255)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.13  E-value=0.084  Score=43.70  Aligned_cols=148  Identities=14%  Similarity=0.164  Sum_probs=90.7

Q ss_pred             CCcEEEEecC--CceeeeeecC--C--CCccceEEEEE--cCCCCCCEEEEEeCCCcEEEEECC---C----ceeEEEEc
Q 048118          102 DRTIKLWNTL--GECKYTIQEG--D--AHTEWVSCVRF--SPNTLQPTIVSASWDRTVKVWNLS---N----CKLRATLA  166 (303)
Q Consensus       102 d~~i~vw~~~--~~~~~~~~~~--~--~~~~~i~~~~~--~~~~~~~~~~~~~~dg~i~iwd~~---~----~~~~~~~~  166 (303)
                      +++|++|++.  ......+...  .  .....+..+++  +|.....+++....+|.+..|++.   +    .+.+.++.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            5889999663  2222111100  0  01134556777  664433456777888999999882   2    24556665


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCC-----CCceEEEecCC---CeEEEEEEc--CCC--eEEEEE-cCCcE
Q 048118          167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA-----EGKRLYSLDAG---AVIHALCFS--PNR--YWLCAA-TEQSI  233 (303)
Q Consensus       167 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~~~~---~~v~~~~~s--~~~--~~l~~~-~~~~i  233 (303)
                      -. +.+..+...+....|..+-++.-|..++.+     +++.+..+..+   ..+..+++-  +++  .+++++ .+++.
T Consensus       178 lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          178 MN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             CS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            43 467788888888899999888777777754     23455444322   356777773  433  455555 36789


Q ss_pred             EEEeCC-CCceeeeeeec
Q 048118          234 KIWDLE-SKSIVEDLKVD  250 (303)
Q Consensus       234 ~iwd~~-~~~~~~~~~~~  250 (303)
                      .+||.+ ..+.+..+.+.
T Consensus       257 ~Vydr~~~~~~vg~f~Ig  274 (355)
T 3amr_A          257 AIYDRQGKNKYVADFRIT  274 (355)
T ss_dssp             EEEESSTTCCEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEec
Confidence            999996 66677666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.10  E-value=0.12  Score=46.28  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCCC--C--Cee-EEEECCCCCEEEEEeC------CCeEEEEeCCCCceEEEecC
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGHT--G--YVN-TVAVSPDGSLCASGGK------DGVILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~--~--~i~-~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~  209 (303)
                      .++.++.|+.+..+|..+++.+.+.....  .  .+. ...+. + ..+++++.      ++.|..+|.++++.+.++..
T Consensus       117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            57778889999999999998776554211  0  111 11111 3 35555554      79999999999998877643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.09  E-value=0.11  Score=44.22  Aligned_cols=158  Identities=12%  Similarity=-0.027  Sum_probs=94.1

Q ss_pred             cCCEEEEEEeeCCCEEE-EEeCCCcEEEEecCCce----eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           81 TKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGEC----KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~-t~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ...+..++|++....|. +-...+.|..++..+..    ...+..  ........+++.+.. ....++-...+.|.+.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence            35678899998655544 44456778878765421    111111  122335678887643 23444455678899999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE--cC
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA--TE  230 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~--~~  230 (303)
                      +........+.........++++|.+..|..+.  ..+.|...++........+.. -...+.+++++++..|..+  ..
T Consensus       188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            876554444443345578999999666554443  247888888865443222222 2567889999865444333  35


Q ss_pred             CcEEEEeCCCC
Q 048118          231 QSIKIWDLESK  241 (303)
Q Consensus       231 ~~i~iwd~~~~  241 (303)
                      +.|+.+|++..
T Consensus       268 ~~I~~~d~dG~  278 (400)
T 3p5b_L          268 HSISSIDVNGG  278 (400)
T ss_dssp             TEEEEEETTSC
T ss_pred             CEEEEEeCCCC
Confidence            78999998654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.09  E-value=0.096  Score=43.60  Aligned_cols=157  Identities=13%  Similarity=-0.000  Sum_probs=93.0

Q ss_pred             CCEEEEEEeeCCCEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      ..+..++|++....|. +-...+.|..++..+.....+...  .......+++.+.. ....++-...+.|.+.++....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~--~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST--GLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC--CCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCc
Confidence            3467899997655544 444567788888765432222211  11223567777643 2334455556789999986544


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEE-EEEeCC-CeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCe-EEEE-EcCCcEEE
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLC-ASGGKD-GVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRY-WLCA-ATEQSIKI  235 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d-~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~-~~~~~i~i  235 (303)
                      ....+.........++++|.+..| .+-... +.|...++.......... .-...+.++++|++. +..+ ...+.|..
T Consensus       150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            333333334567889999966554 444444 789888876543322222 234578899998643 3333 34578999


Q ss_pred             EeCCCC
Q 048118          236 WDLESK  241 (303)
Q Consensus       236 wd~~~~  241 (303)
                      +|+...
T Consensus       230 ~~~dG~  235 (349)
T 3v64_C          230 ANLDGS  235 (349)
T ss_dssp             EETTSC
T ss_pred             EeCCCC
Confidence            998653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.08  E-value=0.15  Score=45.88  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             EEEEeCCCcEEEEECCCceeEEEEcCCC----CCee-EEEECCCCCEEEEEe------CCCeEEEEeCCCCceEEEecC
Q 048118          142 IVSASWDRTVKVWNLSNCKLRATLAGHT----GYVN-TVAVSPDGSLCASGG------KDGVILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       142 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~i~-~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~  209 (303)
                      ++.++.|+.+..+|.++++.+.+.....    ..++ ...+. ++ .+++++      .++.|+-+|.++++.+.++..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            7778889999999999998776543221    0111 11111 34 455554      389999999999999887643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.03  E-value=0.13  Score=44.15  Aligned_cols=211  Identities=10%  Similarity=0.063  Sum_probs=105.8

Q ss_pred             CCEEEEEEeeCCCEEEEEeCC---Cc-EEEEecCCcee--eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           82 KDVLSVAFSIDNRQIVSASRD---RT-IKLWNTLGECK--YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d---~~-i~vw~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ..+..++++++|.++++....   .. +...+......  .....    -.....++++|.. ....++-..++.|+.+|
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~----~~~P~giavd~~~-G~lyv~d~~~~~V~~~d  256 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCN----ARGAKTCAVHPQN-GKIYYTRYHHAMISSYD  256 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEE----CSSBCCCEECTTT-CCEEECBTTCSEEEEEC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccc----cCCCCEEEEeCCC-CeEEEEECCCCEEEEEE
Confidence            357789999999955544321   11 22222211110  01110    1123457777732 23444444567899999


Q ss_pred             CCCceeEEEE-cC-CCCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCC--Cce--EEEe----c------------CCCe
Q 048118          156 LSNCKLRATL-AG-HTGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAE--GKR--LYSL----D------------AGAV  212 (303)
Q Consensus       156 ~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~--~~~--~~~~----~------------~~~~  212 (303)
                      ..++.....+ .. ....-..++++|+++.| ++-...++|+.++...  +..  ...+    .            .-..
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~  336 (433)
T 4hw6_A          257 PATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG  336 (433)
T ss_dssp             TTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS
T ss_pred             CCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC
Confidence            8766552222 21 12233569999999855 4555678999988652  211  0111    0            0123


Q ss_pred             EEEEEE---------cCCCeEEEEE-cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc-C
Q 048118          213 IHALCF---------SPNRYWLCAA-TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS-V  281 (303)
Q Consensus       213 v~~~~~---------s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p  281 (303)
                      ...+++         .+++.+.++- ..+.|+.++. .+.+. .+.-... ......... .............+++. +
T Consensus       337 P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~-~~~~G~~dG-~~~~~~~~~~P~giavd~~  412 (433)
T 4hw6_A          337 PNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGN-SREWGYVDG-ELRSQALFNHPTSIAYDMK  412 (433)
T ss_dssp             EEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCT-TCSSCCBCE-ETTTTCBCSSEEEEEEETT
T ss_pred             CccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCC-CCccccCCC-ccccccEeCCCcEEEEECC
Confidence            566888         6666555443 4577888885 34332 1111000 000000000 00001112235778999 5


Q ss_pred             CCCEEEEeecCCeEEEEecc
Q 048118          282 DGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       282 ~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++.++++=...++|+.+++.
T Consensus       413 ~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          413 RKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEecC
Confidence            66666666678899888764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.00  E-value=0.042  Score=47.97  Aligned_cols=166  Identities=10%  Similarity=0.045  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC---CCCeeEEEE-------CCCCCEEEEEeCCC------
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH---TGYVNTVAV-------SPDGSLCASGGKDG------  191 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~-------~~~~~~l~~~~~d~------  191 (303)
                      ...++|+|.....++++-...+.|++.|+.++.........   ......++|       +++++.|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56789998421234444444567999999887765544332   235788999       99999666665443      


Q ss_pred             -eEEEEeCCC-CceE-----EEecCCCeEEEEEEcCC-CeEEEEE-cCCcEEEEeCC-------CCceeeeeeecccccc
Q 048118          192 -VILLWDLAE-GKRL-----YSLDAGAVIHALCFSPN-RYWLCAA-TEQSIKIWDLE-------SKSIVEDLKVDLKTEA  255 (303)
Q Consensus       192 -~v~iwd~~~-~~~~-----~~~~~~~~v~~~~~s~~-~~~l~~~-~~~~i~iwd~~-------~~~~~~~~~~~~~~~~  255 (303)
                       .|.+.+... ++..     ..+........++++|+ +.++++. .++.|+.+|++       ++.+-....... .  
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~-~--  297 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN-P--  297 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC-T--
T ss_pred             ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc-c--
Confidence             366665333 1111     11111123345677884 4444433 46778888876       333200000000 0  


Q ss_pred             ccccCccceeeccccceeEEEEEEcCCCCEE-EEeecCCeEEEEec
Q 048118          256 EKSEATTATTTIKKKNIYCTSLNWSVDGSTL-FSGYTDGVIRVWGI  300 (303)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~gs~Dg~v~~w~~  300 (303)
                        . ......... ...+...++|+|+|.+| ++=+..+.|+.++.
T Consensus       298 --g-~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          298 --N-TFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             --T-TEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             --c-ccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence              0 000000111 11223578999999954 44456778888654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.00  E-value=0.11  Score=42.71  Aligned_cols=147  Identities=14%  Similarity=0.110  Sum_probs=76.9

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec-CCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce-
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE-GDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK-  160 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~-  160 (303)
                      .+..|.+.+ +..++ ++.++.|..- ..+...+.... .......+..+.+.+++   .++.++.++.|..- ...++ 
T Consensus        81 ~~~~i~~~~-~~~~~-~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~g~v~~S-~DgG~t  153 (327)
T 2xbg_A           81 RFNSVSFQG-NEGWI-VGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNG---SAEMITNVGAIYRT-KDSGKN  153 (327)
T ss_dssp             EEEEEEEET-TEEEE-EEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETT---EEEEEETTCCEEEE-SSTTSS
T ss_pred             cEEEEEecC-CeEEE-EECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCC---CEEEEeCCccEEEE-cCCCCC
Confidence            466777765 44444 4555644332 22111222111 11122335666665443   34444556655332 12222 


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC--CCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEe
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL--AEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWD  237 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd  237 (303)
                      ...........+..+.+.|++.+++.+...+..+-+|-  .+=+.+ .......+..+.+.+++.+++++.+|.+++.+
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~  231 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD  231 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEEEeCCceEEEec
Confidence            22223344567889999998888876654444444442  111222 12234567888899988888888888877764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.95  E-value=0.074  Score=47.69  Aligned_cols=79  Identities=18%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEE--EEEcCCCe-E
Q 048118          148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA--LCFSPNRY-W  224 (303)
Q Consensus       148 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~--~~~s~~~~-~  224 (303)
                      +|.|..||+.+++.+.+..... +...-.+...+.+++.++.|+.++.+|.++++.+.++.....+.+  +.|..++. +
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            5789999999998776654332 221111112356777799999999999999999988865433322  44545653 4


Q ss_pred             EEE
Q 048118          225 LCA  227 (303)
Q Consensus       225 l~~  227 (303)
                      +++
T Consensus       544 v~~  546 (582)
T 1flg_A          544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.90  E-value=0.27  Score=45.65  Aligned_cols=156  Identities=13%  Similarity=0.007  Sum_probs=98.4

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeee-------cCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQ-------EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      ...|.++...++|.+- .|..++-|..++..........       ........|.++...+++   .+-.|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG---KLWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS---CEEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC---CEEEEeCCCcEEE
Confidence            4568888888887654 4666666888876432211111       111123468888887654   3556676677888


Q ss_pred             EECCCceeEEEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCCCeEEE
Q 048118          154 WNLSNCKLRATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       154 wd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~  226 (303)
                      ||..+++.....   ......|.++...+++.+.+ |+.++.+..+|..+++.. .+.    ....|.++...+++.+.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi  465 (781)
T 3v9f_A          388 FENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI  465 (781)
T ss_dssp             EETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred             EECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE
Confidence            987654332110   11235788998888877655 666677888998766432 222    235788888888887655


Q ss_pred             EEcCCcEEEEeCCCCce
Q 048118          227 AATEQSIKIWDLESKSI  243 (303)
Q Consensus       227 ~~~~~~i~iwd~~~~~~  243 (303)
                      ++. +.|..||.++++.
T Consensus       466 gt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             EET-TEEEEEESSSSSC
T ss_pred             EEC-CceEEEeCCCCeE
Confidence            555 6799999876654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.87  E-value=0.17  Score=45.78  Aligned_cols=159  Identities=10%  Similarity=0.024  Sum_probs=88.6

Q ss_pred             CCEEEEEEeeCCCE-EEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC--CCcEEEEECCC
Q 048118           82 KDVLSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--DRTVKVWNLSN  158 (303)
Q Consensus        82 ~~i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--dg~i~iwd~~~  158 (303)
                      ..+..+++.+.+.. ..+-...+.|.+.+..+.....+...  .-.....++++|..  ..+....+  .+.|...++..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~--~l~~P~~Iavdp~~--g~ly~tD~g~~~~I~r~~~dG  159 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDG  159 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCCCCEEEETTT--TEEEEEECSSSCEEEEEETTS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeC--CCCCCceEEEecCC--CeEEEeccCCCCEEEEEECCC
Confidence            35778999986554 44445668899988876533333211  12234578888864  23444343  45677777654


Q ss_pred             ceeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEcCCcEEEE
Q 048118          159 CKLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIW  236 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iw  236 (303)
                      ..........-.....+++++++..|..+ +..++|...|+.......... .......+++.++..+.+-...+.|...
T Consensus       160 ~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~  239 (619)
T 3s94_A          160 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILAC  239 (619)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEE
T ss_pred             CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEE
Confidence            33333232333456889999876655444 456789999886543221111 1112234566555333333346788888


Q ss_pred             eCCCCcee
Q 048118          237 DLESKSIV  244 (303)
Q Consensus       237 d~~~~~~~  244 (303)
                      |..+++..
T Consensus       240 d~~tg~~~  247 (619)
T 3s94_A          240 NKYTGEGL  247 (619)
T ss_dssp             ESSSCCCC
T ss_pred             ECCCCccc
Confidence            88766543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.87  E-value=0.16  Score=42.38  Aligned_cols=153  Identities=11%  Similarity=0.081  Sum_probs=83.0

Q ss_pred             EEEEeeCCCEEEEEe------------CCCcEEEEecCCc--eee--eeec--CCCCccceEEEEEcCC--CCCCEEEEE
Q 048118           86 SVAFSIDNRQIVSAS------------RDRTIKLWNTLGE--CKY--TIQE--GDAHTEWVSCVRFSPN--TLQPTIVSA  145 (303)
Q Consensus        86 ~i~~~~~~~~l~t~~------------~d~~i~vw~~~~~--~~~--~~~~--~~~~~~~i~~~~~~~~--~~~~~~~~~  145 (303)
                      .+...++|..+++++            .+|.|.++|..+.  ...  .+..  .+........+.+.++  +....+++-
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn  133 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  133 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence            455677765555542            6888999997532  111  1111  1112223556666553  211123332


Q ss_pred             e--CCCcEEEEECCCc--e--eEEEEcCC-CCCeeEEEECCCCCEEEEEe-----------------CCCeEEEEeCCCC
Q 048118          146 S--WDRTVKVWNLSNC--K--LRATLAGH-TGYVNTVAVSPDGSLCASGG-----------------KDGVILLWDLAEG  201 (303)
Q Consensus       146 ~--~dg~i~iwd~~~~--~--~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----------------~d~~v~iwd~~~~  201 (303)
                      -  .+..|.+|++...  .  ....+.+. -...+.+.+.++|.+.++..                 ..|.|.-+|..  
T Consensus       134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--  211 (355)
T 3sre_A          134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--  211 (355)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--
T ss_pred             CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--
Confidence            2  2567778776432  2  23344432 24578899999998777653                 12455555542  


Q ss_pred             ceEEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCC
Q 048118          202 KRLYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLES  240 (303)
Q Consensus       202 ~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~  240 (303)
                      +.......-...+.++|+||+..+.++  ..+.|+.|+++.
T Consensus       212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            211111222456789999998554443  468899999864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.86  E-value=0.15  Score=46.42  Aligned_cols=116  Identities=11%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             EEEEee-CCCEEEEEeCCC-----------cEEEEecCCceeeeeecC-CCCccceEEEEEcCCCCCCEEEEEe-CCCcE
Q 048118           86 SVAFSI-DNRQIVSASRDR-----------TIKLWNTLGECKYTIQEG-DAHTEWVSCVRFSPNTLQPTIVSAS-WDRTV  151 (303)
Q Consensus        86 ~i~~~~-~~~~l~t~~~d~-----------~i~vw~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i  151 (303)
                      .+++.+ ++++++.|+.+.           .+.+||............ ..+.....++++.+++  ..++.|+ .+..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--CEEEeCCCCCCce
Confidence            556677 788888887643           477888765432221111 1111222235555654  3566666 45689


Q ss_pred             EEEECCCceeEEEEcCCCCC-eeEEEECCCCCEEEEEe-CC-----CeEEEEeCCCCce
Q 048118          152 KVWNLSNCKLRATLAGHTGY-VNTVAVSPDGSLCASGG-KD-----GVILLWDLAEGKR  203 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~-~d-----~~v~iwd~~~~~~  203 (303)
                      .+||..+++....-.-+... -.++...++++.++.|+ .+     ..+.+||..+.+-
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            99999876544321112222 23456667899999998 34     4689999887653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.84  E-value=0.13  Score=44.98  Aligned_cols=153  Identities=14%  Similarity=0.139  Sum_probs=89.1

Q ss_pred             CEEEEEEeeC-CC-EEEEEeCCCcEEEEecCCceeeeeecC-CCCccceEEEEE-------cCCCCCCEEEEEeCCC---
Q 048118           83 DVLSVAFSID-NR-QIVSASRDRTIKLWNTLGECKYTIQEG-DAHTEWVSCVRF-------SPNTLQPTIVSASWDR---  149 (303)
Q Consensus        83 ~i~~i~~~~~-~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~i~~~~~-------~~~~~~~~~~~~~~dg---  149 (303)
                      ....|+|+|. +. ++++....+.|++.|........+... .........++|       ++++.  .++.+...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCCc
Confidence            4678999983 44 444444446788888766444433221 112234788999       88762  344444443   


Q ss_pred             ----cEEEEECCC-ceeE-----EEEcCCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCC-------CCce--------
Q 048118          150 ----TVKVWNLSN-CKLR-----ATLAGHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLA-------EGKR--------  203 (303)
Q Consensus       150 ----~i~iwd~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~-------~~~~--------  203 (303)
                          .|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                255665333 1221     122211 23457889994 5555666678899999987       4432        


Q ss_pred             ------EEEecCCCeEEEEEEcCCCeEEEE--EcCCcEEEEeC
Q 048118          204 ------LYSLDAGAVIHALCFSPNRYWLCA--ATEQSIKIWDL  238 (303)
Q Consensus       204 ------~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~i~iwd~  238 (303)
                            +.........+.++|+|++..|..  ...+.|+.++.
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                  223333345678999999874333  34678888654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.83  E-value=0.15  Score=41.77  Aligned_cols=153  Identities=10%  Similarity=0.115  Sum_probs=96.5

Q ss_pred             EEEEEeeCCCEEEEEe-CCCcEEEEecCCceeeeeecCC----C-CccceEEEEE---cCCCCCCEEEEEe---------
Q 048118           85 LSVAFSIDNRQIVSAS-RDRTIKLWNTLGECKYTIQEGD----A-HTEWVSCVRF---SPNTLQPTIVSAS---------  146 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~----~-~~~~i~~~~~---~~~~~~~~~~~~~---------  146 (303)
                      .+++|++....|..++ ..+.|..|+..+.....+....    . ....+..+.+   .|++  .++++..         
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g--rL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK--RLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC--EEEEEEEETTTTCTTS
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC--cEEEEEcccccccccc
Confidence            3688988766766666 6899999998643222221111    0 1123578889   5653  2444333         


Q ss_pred             ----CCCcEEEEECC---CceeEEEEc--C-----------CCCCeeEEEECCCCCEEEEEeCC-CeEEEEeCCCCceEE
Q 048118          147 ----WDRTVKVWNLS---NCKLRATLA--G-----------HTGYVNTVAVSPDGSLCASGGKD-GVILLWDLAEGKRLY  205 (303)
Q Consensus       147 ----~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~  205 (303)
                          .+..+..||+.   +++......  .           -......++..++|+..++++.- +.|...+.... .+.
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence                25779999998   666544332  1           11247899999999999988888 88877776543 222


Q ss_pred             Ee--cC-----CCeEEEEEEcCCCeEE-EEEcCCcEEEEeCCC
Q 048118          206 SL--DA-----GAVIHALCFSPNRYWL-CAATEQSIKIWDLES  240 (303)
Q Consensus       206 ~~--~~-----~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~  240 (303)
                      .+  ..     ..-.+.++++|++..| +..+.++|..+|++.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            22  11     1124578999998544 444588999999874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.80  E-value=0.16  Score=41.71  Aligned_cols=189  Identities=11%  Similarity=0.028  Sum_probs=99.3

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcE-EEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEE-EEC--C
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTI-KLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV-WNL--S  157 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i-~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i-wd~--~  157 (303)
                      +.+..+.+.+++..++.+ .++.| +-.|- +.......  ......+..+.+.|++  ..++ .+.+|.+.. .|-  .
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg-G~tW~~~~--~~~~~~~~~~~~~~~~--~~~~-~g~~G~~~~S~d~gG~  194 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYRTKDS-GKNWQALV--QEAIGVMRNLNRSPSG--EYVA-VSSRGSFYSTWEPGQT  194 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEEESST-TSSEEEEE--CSCCCCEEEEEECTTS--CEEE-EETTSSEEEEECTTCS
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEEEcCC-CCCCEEee--cCCCcceEEEEEcCCC--cEEE-EECCCcEEEEeCCCCC
Confidence            346677777777666655 45543 22231 22221221  1233457888898864  3444 445555544 342  2


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-----CCCeEEEEEEcCCCeEEEEEcCCc
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-----AGAVIHALCFSPNRYWLCAATEQS  232 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~  232 (303)
                      +.+..  -......+..+.+.++++.++ ++.+|.+.+.+...++.-..+.     ....+.++++.+++.+++++.++.
T Consensus       195 tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~  271 (327)
T 2xbg_A          195 AWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGA  271 (327)
T ss_dssp             SCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred             ceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCe
Confidence            22222  123446788899999887664 4467888776422233221121     123578899998888888888887


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      |+ +..+.++.-..+...                 ......+.++.|.+++ .+++++.+|.|.-++
T Consensus       272 i~-~S~DgG~tW~~~~~~-----------------~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          272 LL-CSQDGGQTWQQDVDV-----------------KKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             EE-EESSTTSSCEECGGG-----------------TTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             EE-EeCCCCcccEEcCcc-----------------CCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            74 333333221111100                 0000112346666544 466667789887664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.64  E-value=0.43  Score=44.39  Aligned_cols=159  Identities=11%  Similarity=-0.041  Sum_probs=93.6

Q ss_pred             cCCEEEEEEeeCCCE-EEEEeCCCcEEEEecCCce----eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           81 TKDVLSVAFSIDNRQ-IVSASRDRTIKLWNTLGEC----KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ...+..++|++.... +.+-...+.|..+++.+..    ...+..  ........|++.+.+ ..+.++-...+.|.+.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecC-CcEEEEecCCCeEEEEe
Confidence            345678999985544 4454556778777765421    111111  112234567777654 23445556678899999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-C-CCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEE--cC
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-K-DGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA--TE  230 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~--~~  230 (303)
                      +........+.........|+++|.+..|..+. . .++|.+.++........+.. -.....|++++.+..|..+  ..
T Consensus       500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            875544333333445678999999765554443 2 37899998875544333332 2467889999764333333  35


Q ss_pred             CcEEEEeCCCCc
Q 048118          231 QSIKIWDLESKS  242 (303)
Q Consensus       231 ~~i~iwd~~~~~  242 (303)
                      +.|..+++....
T Consensus       580 ~~I~~~d~dG~~  591 (791)
T 3m0c_C          580 HSISSIDVNGGN  591 (791)
T ss_dssp             TEEEEEETTSCS
T ss_pred             CcEEEEecCCCc
Confidence            679999986543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.64  E-value=0.21  Score=40.80  Aligned_cols=156  Identities=12%  Similarity=-0.020  Sum_probs=90.6

Q ss_pred             CCEEEEEEeeCCCE-EEEEeCCCcEEEEecCC----ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           82 KDVLSVAFSIDNRQ-IVSASRDRTIKLWNTLG----ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        82 ~~i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      ..+..++|++.+.. +.+-...+.|..++..+    .....+..  ........+++++.. ....++-...+.|.++++
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeC
Confidence            45678999986554 44545567888888754    11111111  111224567777643 223444456788999998


Q ss_pred             CCceeEEEEcCCCCCeeEEEECCCCCEEEEEe-CC-CeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEE-EE-EcCC
Q 048118          157 SNCKLRATLAGHTGYVNTVAVSPDGSLCASGG-KD-GVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWL-CA-ATEQ  231 (303)
Q Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~-~~~~  231 (303)
                      ........+.........++++|.+..|..+. .. +.|...++......... ..-...+.+++++++..| .+ +..+
T Consensus       107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            65443333333335678999999666554443 33 78888887543322111 223467789999865433 33 3457


Q ss_pred             cEEEEeCCC
Q 048118          232 SIKIWDLES  240 (303)
Q Consensus       232 ~i~iwd~~~  240 (303)
                      .|..+|++.
T Consensus       187 ~I~~~d~dg  195 (316)
T 1ijq_A          187 SISSIDVNG  195 (316)
T ss_dssp             EEEEEETTS
T ss_pred             eEEEEecCC
Confidence            899999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.36  E-value=0.034  Score=51.04  Aligned_cols=155  Identities=11%  Similarity=-0.032  Sum_probs=84.6

Q ss_pred             CEEEEEEeeCCCEEEEE-eCCCcEEEEecCC----ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           83 DVLSVAFSIDNRQIVSA-SRDRTIKLWNTLG----ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~-~~d~~i~vw~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      .+..++|++.+..|+.. ...+.|..+++.+    .....+.  .........+++.+... .++++-...+.|.++++.
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--~~~~~~P~glavD~~~g-~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVDWIHS-NIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--CSCC--CCCEECCCSSS-BCEECCTTTSCEEEEBSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--eCCCCCcceEEEEeeCC-cEEEEeccCCeEEEEecC
Confidence            45678888866655544 4457788887754    1111111  01111234566665432 234444456789999986


Q ss_pred             CceeEEEEcCCCCCeeEEEECCCCCEEEEEe-C-CCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCe-EE-EEEcCCc
Q 048118          158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGG-K-DGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRY-WL-CAATEQS  232 (303)
Q Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l-~~~~~~~  232 (303)
                      .......+.........++++|.+..|..+. . .++|.+.++........+ ..-...+.++|+|++. ++ +-+..+.
T Consensus       484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~  563 (699)
T 1n7d_A          484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  563 (699)
T ss_dssp             SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence            5544333332234557889999655444433 2 378888877543221111 1123456789998743 33 3334678


Q ss_pred             EEEEeCCC
Q 048118          233 IKIWDLES  240 (303)
Q Consensus       233 i~iwd~~~  240 (303)
                      |..+++..
T Consensus       564 I~~~d~dG  571 (699)
T 1n7d_A          564 ISSIDVNG  571 (699)
T ss_dssp             EEEECSSS
T ss_pred             EEEEccCC
Confidence            99999864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.33  E-value=0.34  Score=39.64  Aligned_cols=155  Identities=12%  Similarity=-0.001  Sum_probs=90.4

Q ss_pred             CEEEEEEeeCCC-EEEEEeCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           83 DVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        83 ~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .+..++|++... ++.+-...+.|..++..+... ..+...  .......+++.+.. ....++-...+.|.++++....
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~--~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS--GLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE--CCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC--CCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCc
Confidence            456789998544 445555667788888754321 111110  11124467777643 2234444556789999986543


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCC-eEEEE-EcCCcEEE
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNR-YWLCA-ATEQSIKI  235 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~-~~~~~i~i  235 (303)
                      ....+.........+++.|.+..|..+.  ..+.|...++.......... .-...+.+++++++ .+..+ +..+.|+.
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            3333333345678899998766555444  35788888876433222222 22456789999864 33333 34678999


Q ss_pred             EeCCC
Q 048118          236 WDLES  240 (303)
Q Consensus       236 wd~~~  240 (303)
                      +|+..
T Consensus       193 ~d~dG  197 (318)
T 3sov_A          193 SNLDG  197 (318)
T ss_dssp             EETTS
T ss_pred             EcCCC
Confidence            99864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.21  E-value=0.67  Score=41.89  Aligned_cols=198  Identities=10%  Similarity=0.030  Sum_probs=112.5

Q ss_pred             ceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE
Q 048118           17 MVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI   96 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l   96 (303)
                      .+..|+|++.+..++.+-..++.|..+++......                .+ +..      -...+..+++.+.+..|
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~----------------~v-~~~------g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALE----------------HV-VEF------GLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------------EE-ECS------SCSCCCEEEEETTTTEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE----------------EE-EeC------CCCCcceEEEEeCCCEE
Confidence            35577888766666666666777777766422110                00 000      01234578888665544


Q ss_pred             -EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC--CCcEEEEECCCceeEEEEcCCCCCee
Q 048118           97 -VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--DRTVKVWNLSNCKLRATLAGHTGYVN  173 (303)
Q Consensus        97 -~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~  173 (303)
                       .+-...+.|.+.++.+.....+...  .-.....++++|..  ..+....+  .+.|...++....... +...-....
T Consensus        95 Y~tD~~~~~I~v~~~dG~~~~~l~~~--~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~P~  169 (628)
T 4a0p_A           95 YWADTGTNRIEVSKLDGQHRQVLVWK--DLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTT-LVPNVGRAN  169 (628)
T ss_dssp             EEEETTTTEEEEEETTSTTCEEEECS--SCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEE-EECSCSSEE
T ss_pred             EEEECCCCEEEEEecCCCcEEEEEeC--CCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEE-EECCCCCcc
Confidence             4444567788888765433222211  22345789999854  24444442  5678778876544332 223345678


Q ss_pred             EEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCc
Q 048118          174 TVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKS  242 (303)
Q Consensus       174 ~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~  242 (303)
                      .++++++++.|..+ ...+.|...|+.................+++..+..+.+-...+.|...|..+++
T Consensus       170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence            89999976666554 4578999999875433211122233456777654333333346788888876554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.65  E-value=0.2  Score=42.59  Aligned_cols=115  Identities=10%  Similarity=0.086  Sum_probs=68.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceEE--Eec---CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeee-eeecccc
Q 048118          180 DGSLCASGGKDGVILLWDLAEGKRLY--SLD---AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVED-LKVDLKT  253 (303)
Q Consensus       180 ~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~---~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~-~~~~~~~  253 (303)
                      +|..++.+ .++.||..++..+..-+  ..+   ....+..+..||+|.+||..++..|.+-.+-.+..... ....   
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~---  106 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ---  106 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH---
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccc---
Confidence            44444433 24678877776433222  222   12256779999999999999999999998863321110 0000   


Q ss_pred             ccccccCccceeecc----ccceeEEEEEEcCC---CCEEEEeecCCeEEEEeccc
Q 048118          254 EAEKSEATTATTTIK----KKNIYCTSLNWSVD---GSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~----~~~~~~~~~~~sp~---~~~l~~gs~Dg~v~~w~~~~  302 (303)
                          .........+.    .....+..+.|+|-   +..|++=..|+.||+||+.+
T Consensus       107 ----~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          107 ----DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             ----HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ----cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                00000001111    01345778999995   45899999999999999974

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.59  E-value=0.079  Score=40.75  Aligned_cols=107  Identities=14%  Similarity=0.057  Sum_probs=61.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeE--------EEEEEcCCCeEEEEEcCCcEEEEeCCCCc
Q 048118          171 YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVI--------HALCFSPNRYWLCAATEQSIKIWDLESKS  242 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--------~~~~~s~~~~~l~~~~~~~i~iwd~~~~~  242 (303)
                      .+..++|+|+|.+.++  .+|.+.-.+..+.+...-+.....|        ..+.|.|++.+.++ +||.|+-++--+..
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD  118 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence            5779999999987776  6787776665442210000111223        67889999988877 77999877742110


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeE
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI  295 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v  295 (303)
                      --     ...     ..   ........-..+..|.+.|+|.+.++.  ||.+
T Consensus       119 ~~-----~Wl-----~~---a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          119 TD-----NWI-----AR---ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             TC-----CHH-----HH---SEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CC-----cee-----cc---ccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            00     000     00   000001111223678899999988877  7765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.58  E-value=0.84  Score=37.97  Aligned_cols=132  Identities=10%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             CCCcEEEEECCCc--ee-EEEEcC-----CCCCeeEEEECC--CCC--EEEEEeC--CCeEEEEeCCCCc----eEEEec
Q 048118          147 WDRTVKVWNLSNC--KL-RATLAG-----HTGYVNTVAVSP--DGS--LCASGGK--DGVILLWDLAEGK----RLYSLD  208 (303)
Q Consensus       147 ~dg~i~iwd~~~~--~~-~~~~~~-----~~~~i~~~~~~~--~~~--~l~~~~~--d~~v~iwd~~~~~----~~~~~~  208 (303)
                      .+|.|.++|.++.  +. .-.+.+     ..-....+.+.+  ++.  ++++-..  +.++.+|++....    .+.++.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6889999998732  22 112222     122456666644  453  3444333  5688888775432    122333


Q ss_pred             C--CCeEEEEEEcCCCeEEEEEc----C--------------CcEEEEeCCCCceeeeeeeccccccccccCccceeecc
Q 048118          209 A--GAVIHALCFSPNRYWLCAAT----E--------------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIK  268 (303)
Q Consensus       209 ~--~~~v~~~~~s~~~~~l~~~~----~--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (303)
                      .  -...+.+.+.++|.+.++..    +              +.|+.+|..  + +..                    +.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~--------------------~~  217 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRV--------------------VA  217 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEE--------------------EE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEE--------------------ee
Confidence            2  24678888888887655532    1              234444431  1 000                    01


Q ss_pred             ccceeEEEEEEcCCCCEEEEe-ecCCeEEEEecc
Q 048118          269 KKNIYCTSLNWSVDGSTLFSG-YTDGVIRVWGIG  301 (303)
Q Consensus       269 ~~~~~~~~~~~sp~~~~l~~g-s~Dg~v~~w~~~  301 (303)
                      ......+.++||||+++|.++ +..+.|..|++.
T Consensus       218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            112235789999999876655 467899999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.54  E-value=1.3  Score=39.98  Aligned_cols=157  Identities=10%  Similarity=0.001  Sum_probs=94.1

Q ss_pred             CCEEEEEEeeCCCEE-EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           82 KDVLSVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      ..+..++|++....+ .+-..++.|..++..+.....+...  .......+++.+.. .....+-...+.|.+.++....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~--g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF--GLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC--CCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc
Confidence            356789999865554 4555678888888765422222211  11234567777653 2234444556789999986543


Q ss_pred             eEEEEcCCCCCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE--EcCCcEEEE
Q 048118          161 LRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA--ATEQSIKIW  236 (303)
Q Consensus       161 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~i~iw  236 (303)
                      ....+...-.....+++.|....|..+.  ..++|...++.................+++++++..|..  ...+.|..+
T Consensus       114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~  193 (628)
T 4a0p_A          114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS  193 (628)
T ss_dssp             CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence            3332323345568999998655554443  356888888765443322333456788999986543333  346789999


Q ss_pred             eCCCC
Q 048118          237 DLESK  241 (303)
Q Consensus       237 d~~~~  241 (303)
                      |+...
T Consensus       194 d~dG~  198 (628)
T 4a0p_A          194 NMLGL  198 (628)
T ss_dssp             ETTSC
T ss_pred             cCCCC
Confidence            98654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.23  E-value=0.14  Score=45.04  Aligned_cols=70  Identities=11%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             CeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCc-------------eEEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEE
Q 048118          171 YVNTVAVSPDGSLCASGG-KDGVILLWDLAEGK-------------RLYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKI  235 (303)
Q Consensus       171 ~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i  235 (303)
                      ....+.++|||++++.++ .+.++.++|++.-.             .+.....+......+|.++|...++. -|.+|..
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            345688999999987766 58899999987421             12334455566778999999544443 4889999


Q ss_pred             EeCCC
Q 048118          236 WDLES  240 (303)
Q Consensus       236 wd~~~  240 (303)
                      ||+..
T Consensus       404 Wni~~  408 (638)
T 3sbq_A          404 WNMEE  408 (638)
T ss_dssp             EEHHH
T ss_pred             EeccH
Confidence            99864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.70  E-value=0.95  Score=34.83  Aligned_cols=101  Identities=13%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee------EEEEc--CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeC
Q 048118          127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL------RATLA--GHTGYVNTVAVSPDGSLCASGGKDGVILLWDL  198 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~------~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~  198 (303)
                      .+..++|+|++   .|.+. .+|.+.-.+..+.+.      ...+-  +.. ....+.|.|+|.+.++  .||.|.-++.
T Consensus        42 ~~~~laf~P~G---~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGG---ELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTS---CEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCc---cEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            35689999976   24444 778777666544211      11121  111 1467899999988877  5699988876


Q ss_pred             CCCceE------EEecC--CCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118          199 AEGKRL------YSLDA--GAVIHALCFSPNRYWLCAATEQSIKI  235 (303)
Q Consensus       199 ~~~~~~------~~~~~--~~~v~~~~~s~~~~~l~~~~~~~i~i  235 (303)
                      .+...-      ..+..  -..+..+.|.|+|.+.++. ++.++-
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr  158 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK  158 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence            432110      00100  1356889999999988888 888653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.046  Score=45.20  Aligned_cols=110  Identities=8%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcCC-CCCeeEEEE--CC-CCCEEEEE-eCCCeEEEEeCCCCceEEEecC-----C
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAGH-TGYVNTVAV--SP-DGSLCASG-GKDGVILLWDLAEGKRLYSLDA-----G  210 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~--~~-~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~-----~  210 (303)
                      .++.++.||.|.-.|..+++.+.++... ..++....-  .+ ++..++.. +.||.+..+|..+|.....+..     .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            5788999999999999999988877653 122222111  01 22334443 5899999999988765544321     1


Q ss_pred             CeEEE---EEE------cCCCeEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118          211 AVIHA---LCF------SPNRYWLCAATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       211 ~~v~~---~~~------s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      +++..   ...      +.++.+++++.+++++..|+++|+.+.+....
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            22221   001      24667778888999999999999998877643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.06  E-value=3.3  Score=37.35  Aligned_cols=157  Identities=13%  Similarity=0.008  Sum_probs=90.5

Q ss_pred             CCEEEEEEeeCCCEEEEE-eCCCcEEEEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           82 KDVLSVAFSIDNRQIVSA-SRDRTIKLWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~-~~d~~i~vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      ..+..++|++.+..+.-+ ...+.|..++..+... ..+..  ........+++++.+ ....++-...+.|.+.++...
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC--SSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCC
Confidence            456789999866655544 4456777777654321 11211  112346788888754 234444556788999998654


Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEEe--CCCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEE-EE-EcCCcEE
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASGG--KDGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWL-CA-ATEQSIK  234 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~-~~~~~i~  234 (303)
                      .....+...-.....+++.|.+..|..+.  ..+.|...++......... ..-...+.+++++++..| .+ ...+.|+
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            43333333344567899999755554443  2467777776543322222 223457789999864333 33 3457899


Q ss_pred             EEeCCCC
Q 048118          235 IWDLESK  241 (303)
Q Consensus       235 iwd~~~~  241 (303)
                      .+|+...
T Consensus       197 ~~~~dG~  203 (619)
T 3s94_A          197 KSNLDGT  203 (619)
T ss_dssp             EESSSCC
T ss_pred             EecCCCC
Confidence            9998654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.35  E-value=2.1  Score=35.49  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eEEEec----CCCeEEEEEEcCC----CeEEEEEc----C----Cc
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLD----AGAVIHALCFSPN----RYWLCAAT----E----QS  232 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~s~~----~~~l~~~~----~----~~  232 (303)
                      .....++|.|+|++++ +..+|+|+++|. .++ .+..+.    .......++++|+    +.+.++..    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4567899999998555 456699999973 443 232221    2245788999997    44444332    2    56


Q ss_pred             EEEEeCCCC
Q 048118          233 IKIWDLESK  241 (303)
Q Consensus       233 i~iwd~~~~  241 (303)
                      |..|+....
T Consensus       107 v~r~~~~~~  115 (354)
T 3a9g_A          107 VIRGRLDGS  115 (354)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            777776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.22  E-value=3.1  Score=34.41  Aligned_cols=69  Identities=20%  Similarity=0.291  Sum_probs=44.4

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCc--eEEEec----CCCeEEEEEEcCC----CeEEEEEc-C-----CcE
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLD----AGAVIHALCFSPN----RYWLCAAT-E-----QSI  233 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~----~~~~v~~~~~s~~----~~~l~~~~-~-----~~i  233 (303)
                      ..-..++|.|+|+++++ ..+++|++++  .++  .+..+.    .......++++|+    +.+.++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45678999999986554 5669999998  333  222221    1346788999998    44433332 2     678


Q ss_pred             EEEeCCCC
Q 048118          234 KIWDLESK  241 (303)
Q Consensus       234 ~iwd~~~~  241 (303)
                      ..|+....
T Consensus       108 ~r~~~~~~  115 (352)
T 2ism_A          108 VRLRHLGE  115 (352)
T ss_dssp             EEEEECSS
T ss_pred             EEEEeCCC
Confidence            88887643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.92  E-value=3.4  Score=34.15  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             CCEEEEEEeeCCC-EEEEEeCCCcEEEEecCCceeeeeecC----CCCccceEEEEEcCC---CCCCEEEEEeC------
Q 048118           82 KDVLSVAFSIDNR-QIVSASRDRTIKLWNTLGECKYTIQEG----DAHTEWVSCVRFSPN---TLQPTIVSASW------  147 (303)
Q Consensus        82 ~~i~~i~~~~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~----~~~~~~i~~~~~~~~---~~~~~~~~~~~------  147 (303)
                      .....|+|.|+|+ +++ +...+.|++++..+.....+...    .........++++|+   .. ...++-..      
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR-RIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC-EEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCC-EEEEEEeCCCCCCC
Confidence            3567899999998 555 55678898887543221111100    111234678999995   21 22232222      


Q ss_pred             -CCcEEEEECCCc--ee--EEE-EcCC------CCCeeEEEECCCCCEEEEEeC-------------CCeEEEEeCCCC-
Q 048118          148 -DRTVKVWNLSNC--KL--RAT-LAGH------TGYVNTVAVSPDGSLCASGGK-------------DGVILLWDLAEG-  201 (303)
Q Consensus       148 -dg~i~iwd~~~~--~~--~~~-~~~~------~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~-  201 (303)
                       ...|..|++...  +.  ... +..-      ...-..+.|.|+|.+.++.+.             .|+|.-+|.... 
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             224555665432  11  111 1110      112356999999965555433             245666665432 


Q ss_pred             -------------ceEEEecCCCeEEEEEEcC-CCeEEEEE
Q 048118          202 -------------KRLYSLDAGAVIHALCFSP-NRYWLCAA  228 (303)
Q Consensus       202 -------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~  228 (303)
                                   ..+..... -....++|+| ++.+.++-
T Consensus       176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence                         11222111 2356789999 66655543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.74  E-value=3.1  Score=33.17  Aligned_cols=144  Identities=12%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCce---eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-----CcEEEEECCC
Q 048118           92 DNRQIVSASRD-----RTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-----RTVKVWNLSN  158 (303)
Q Consensus        92 ~~~~l~t~~~d-----~~i~vw~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-----g~i~iwd~~~  158 (303)
                      ++.+++.|+.+     ..+.+||.....   ...............++..  ++  ..++.|+.+     ..+.+||..+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~--~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD--MIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT--EEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CC--EEEEEcccCCCcccceEEEEcCCC
Confidence            56667777754     357788875543   2222111111111122222  22  245555543     3588899887


Q ss_pred             ceeEEE--EcCCCCCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceEEE--ecCCCeEEEEEEcCCCeEEE-EE
Q 048118          159 CKLRAT--LAGHTGYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKRLYS--LDAGAVIHALCFSPNRYWLC-AA  228 (303)
Q Consensus       159 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~-~~  228 (303)
                      ++....  +.........+.+  +++.++.|+.+     ..+.++|+.+.+-...  ....-.-.+++.. ++.+++ ++
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG  214 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGG  214 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeC
Confidence            664332  2111111122222  56677777654     4578889877653222  1111111122222 344443 33


Q ss_pred             c-----CCcEEEEeCCCCc
Q 048118          229 T-----EQSIKIWDLESKS  242 (303)
Q Consensus       229 ~-----~~~i~iwd~~~~~  242 (303)
                      .     ...+.+||+++.+
T Consensus       215 ~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCc
Confidence            3     2468999987654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.67  E-value=4.4  Score=34.73  Aligned_cols=132  Identities=8%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (303)
                      ..|.|.|+.+......-   .-..-+..++|..+.+|.-. ..+++|+|+++.+++..+.....|.=-.|-.+ ..|+.-
T Consensus        48 ~~vvIiDl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lV  122 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALV  122 (494)
T ss_dssp             CEEEEEETTSTTSCEEE---ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEE
T ss_pred             CeEEEEECCCCCcceec---ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEE
Confidence            36777888764322111   11233567899888877665 68999999999999888765444433344322 356777


Q ss_pred             cCCcEEEEeCCCCce-eeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee---c----CCeEEEEec
Q 048118          229 TEQSIKIWDLESKSI-VEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY---T----DGVIRVWGI  300 (303)
Q Consensus       229 ~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs---~----Dg~v~~w~~  300 (303)
                      ++..|+-|++..... .+-..-+              ..+.  ...+.+..-++++++++..+   .    .|.+.+|..
T Consensus       123 T~taVyHWsi~~~s~P~kvFdR~--------------~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~  186 (494)
T 1bpo_A          123 TDNAVYHWSMEGESQPVKMFDRH--------------SSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  186 (494)
T ss_dssp             CSSEEEEEESSSSCCCEEEEECC--------------GGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred             cCCeeEEecccCCCCchhheecc--------------hhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence            888999999965321 1111100              0111  24556677788888766332   2    355566655


Q ss_pred             c
Q 048118          301 G  301 (303)
Q Consensus       301 ~  301 (303)
                      .
T Consensus       187 e  187 (494)
T 1bpo_A          187 D  187 (494)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.50  E-value=3.4  Score=33.05  Aligned_cols=144  Identities=11%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC------CcEEEEECCCcee
Q 048118           92 DNRQIVSASRD----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD------RTVKVWNLSNCKL  161 (303)
Q Consensus        92 ~~~~l~t~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d------g~i~iwd~~~~~~  161 (303)
                      ++.+++.|+.+    ..+.+||....................++..  ++  ..++.|+.+      ..+.+||..+.+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EG--KIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TT--EEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CC--EEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            56667777754    5677788765543332211111111122222  22  245556654      4588999987764


Q ss_pred             EEEEcCCCC--CeeEEEECCCCCEEEEEeC---------CCeEEEEeCCCCceEEE--ecCCCeEEEEEEcCCCeEEEE-
Q 048118          162 RATLAGHTG--YVNTVAVSPDGSLCASGGK---------DGVILLWDLAEGKRLYS--LDAGAVIHALCFSPNRYWLCA-  227 (303)
Q Consensus       162 ~~~~~~~~~--~i~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~-  227 (303)
                      ...-.....  ....+.+  +++.++.|+.         -..+.+||+.+.+-...  ....-.-.+++.. ++.+++. 
T Consensus       131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G  207 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVG  207 (306)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred             EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEe
Confidence            432111111  1122222  5566677664         24578889877643221  1111111122222 3444433 


Q ss_pred             Ec-----CCcEEEEeCCCCc
Q 048118          228 AT-----EQSIKIWDLESKS  242 (303)
Q Consensus       228 ~~-----~~~i~iwd~~~~~  242 (303)
                      +.     -..+.+||.++.+
T Consensus       208 G~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CEETTEEBCCEEEEETTTTE
T ss_pred             CCCCCCCCceEEEeeCCCCc
Confidence            32     2468889887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.26  E-value=4.6  Score=34.76  Aligned_cols=52  Identities=15%  Similarity=0.303  Sum_probs=34.5

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEec-------CCCeEEEEEEcCC
Q 048118          170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSLD-------AGAVIHALCFSPN  221 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~-------~~~~v~~~~~s~~  221 (303)
                      .....++|.|+|+++++-...++|++++...++.  +..+.       .......++|+|+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            4567899999999777655445798887654442  22222       1234668999994

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.17  E-value=3.7  Score=32.74  Aligned_cols=144  Identities=10%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-------CCcEEEEECCCc
Q 048118           92 DNRQIVSASRDR-----TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-------DRTVKVWNLSNC  159 (303)
Q Consensus        92 ~~~~l~t~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------dg~i~iwd~~~~  159 (303)
                      ++..++.|+.++     .+.+||........+...........++..  ++  ..++.|+.       -..+.+||+.++
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG--LLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT--EEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC--EEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            566667777553     356677655443332211111111122222  21  24444543       245889998876


Q ss_pred             eeEEE--EcCCCCCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceEEE--ecCCCeEEEEEEcCCCeEE-EEEc
Q 048118          160 KLRAT--LAGHTGYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKRLYS--LDAGAVIHALCFSPNRYWL-CAAT  229 (303)
Q Consensus       160 ~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l-~~~~  229 (303)
                      +....  +.........+.+  +++.++.|+.+     ..+.+||+.+.+-...  ....-.-.+++.. ++.++ .++.
T Consensus       184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~  260 (302)
T 2xn4_A          184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGD  260 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred             cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCc
Confidence            64432  1111111222222  46677777754     3688899877653221  1111111112222 34443 4333


Q ss_pred             C-----CcEEEEeCCCCc
Q 048118          230 E-----QSIKIWDLESKS  242 (303)
Q Consensus       230 ~-----~~i~iwd~~~~~  242 (303)
                      +     ..+.+||.++.+
T Consensus       261 ~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CSSSBCCCEEEEETTTTE
T ss_pred             CCCcccccEEEEcCCCCe
Confidence            3     358888887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.97  E-value=3.9  Score=32.60  Aligned_cols=145  Identities=12%  Similarity=0.196  Sum_probs=67.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-----cEEEEECCCcee
Q 048118           92 DNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-----TVKVWNLSNCKL  161 (303)
Q Consensus        92 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-----~i~iwd~~~~~~  161 (303)
                      ++.+++.|+.+     ..+.+||....................++.+  ++  ..++.|+.++     .+.+||+.+++.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG--LLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT--EEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC--EEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            56677777754     3477788765543332211111111122222  22  2455565543     477889877664


Q ss_pred             EEEEc--CCCCCeeEEEECCCCCEEEEEeCC-------CeEEEEeCCCCceEEE--ecCCCeEEEEEEcCCCeEEEEEcC
Q 048118          162 RATLA--GHTGYVNTVAVSPDGSLCASGGKD-------GVILLWDLAEGKRLYS--LDAGAVIHALCFSPNRYWLCAATE  230 (303)
Q Consensus       162 ~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~  230 (303)
                      ...-.  ........+.+  +++.++.|+.+       ..+.++|+.+.+-...  ....-.-.+++...+..++.++.+
T Consensus       137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  214 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD  214 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred             eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence            43211  11111122222  45666776642       3578888877653221  111111112222223333343332


Q ss_pred             -----CcEEEEeCCCCc
Q 048118          231 -----QSIKIWDLESKS  242 (303)
Q Consensus       231 -----~~i~iwd~~~~~  242 (303)
                           ..+.+||.++.+
T Consensus       215 ~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             SSSBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCC
Confidence                 468899987653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.62  E-value=5.1  Score=33.14  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCce--EEEec-----CCCeEEEEEEcCC----CeEEEE-E--cC
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR--LYSLD-----AGAVIHALCFSPN----RYWLCA-A--TE  230 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~-----~~~~v~~~~~s~~----~~~l~~-~--~~  230 (303)
                      +...-.....++|.|+|+++++-...|+|++++...++.  +..+.     .......++++|+    +.+.+. +  .+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333345678999999999877665589999998665543  22221     2345678999985    433332 2  34


Q ss_pred             CcEEEEeCCC
Q 048118          231 QSIKIWDLES  240 (303)
Q Consensus       231 ~~i~iwd~~~  240 (303)
                      +.|.-|.+..
T Consensus       107 ~~v~R~~~~~  116 (347)
T 3das_A          107 NRIVRMLYDE  116 (347)
T ss_dssp             EEEEEEEBCT
T ss_pred             CEEEEEEeCC
Confidence            5566665543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.45  E-value=4.5  Score=32.21  Aligned_cols=106  Identities=10%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-----CcEEEEECCCcee
Q 048118           92 DNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-----RTVKVWNLSNCKL  161 (303)
Q Consensus        92 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-----g~i~iwd~~~~~~  161 (303)
                      ++.+++.|+.+     ..+.+||........+.........-.++..  ++  ..++.|+.+     ..+.+||+.+++.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG--VIYCLGGYDGLNILNSVEKYDPHTGHW  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT--EEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC--EEEEECCCCCCcccceEEEEeCCCCcE
Confidence            56666777654     3567778765443332211111111122222  22  245556554     4588999887764


Q ss_pred             EEEEcCCC--CCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCce
Q 048118          162 RATLAGHT--GYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKR  203 (303)
Q Consensus       162 ~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~  203 (303)
                      ...-....  .....+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       188 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          188 TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            43211111  11122223  46677777764     4688899887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.30  E-value=12  Score=36.64  Aligned_cols=89  Identities=8%  Similarity=0.014  Sum_probs=51.3

Q ss_pred             eEEEEeCCCCceEEEecC--CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccc
Q 048118          192 VILLWDLAEGKRLYSLDA--GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKK  269 (303)
Q Consensus       192 ~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (303)
                      .|++.+...+..+..+..  +..|...+.+. .+++.+ .++.+..++++.+++....+.                .+  
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-~~vvva-~g~~l~~fel~~~~L~~~~~~----------------~l--  552 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS-SQVVVA-VGRALYYLQIHPQELRQISHT----------------EM--  552 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS-SEEEEE-ETTEEEEEEEETTEEEEEEEE----------------EC--
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC-CEEEEE-ECCEEEEEEeeCCceeeeccc----------------CC--
Confidence            466677655555555543  33555555543 344444 567888887765543221110                11  


Q ss_pred             cceeEEEEEEcCC------CCEEEEeec-CCeEEEEecc
Q 048118          270 KNIYCTSLNWSVD------GSTLFSGYT-DGVIRVWGIG  301 (303)
Q Consensus       270 ~~~~~~~~~~sp~------~~~l~~gs~-Dg~v~~w~~~  301 (303)
                       ...+.++++.|.      +.++++|.. |++|+++++.
T Consensus       553 -~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          553 -EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             -SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             -CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence             112455666543      469999997 9999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.37  E-value=6.7  Score=32.35  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=17.3

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWH   44 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~   44 (303)
                      ...+++.|++ +++++ ..++.|.+++
T Consensus        33 P~~ia~~pdG-~l~V~-e~~g~I~~i~   57 (352)
T 2ism_A           33 PWALAFLPDG-GMLIA-ERPGRIRLFR   57 (352)
T ss_dssp             EEEEEECTTS-CEEEE-ETTTEEEEEE
T ss_pred             ceEEEEcCCC-eEEEE-eCCCeEEEEE
Confidence            4678888875 45555 4558888886

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.17  E-value=7  Score=32.29  Aligned_cols=104  Identities=19%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC---CCCccceEEEEEcCCCC--CCEEEEEeC---C----C
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG---DAHTEWVSCVRFSPNTL--QPTIVSASW---D----R  149 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~--~~~~~~~~~---d----g  149 (303)
                      .....++|.|+|.+++ +..++.|++++..+.  ..+...   .........++++|+-.  ....++-..   +    .
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            3567899999998555 456688988875433  112111   11223578899999611  122233221   2    4


Q ss_pred             cEEEEECCCc--e------eEEEEcC-CCCCeeEEEECCCCCEEEEEe
Q 048118          150 TVKVWNLSNC--K------LRATLAG-HTGYVNTVAVSPDGSLCASGG  188 (303)
Q Consensus       150 ~i~iwd~~~~--~------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  188 (303)
                      .|..|+....  .      ....+.. .......++|.|+|.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            5777776543  1      1111221 111245789999998766643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.93  E-value=15  Score=35.80  Aligned_cols=189  Identities=8%  Similarity=-0.050  Sum_probs=94.5

Q ss_pred             CCEEEEEEeeC------CCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           82 KDVLSVAFSID------NRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        82 ~~i~~i~~~~~------~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      ++|.|+++.+.      +.+++.|.. |++++++.+........+.... .....++.+..-....++..|-.||.+..+
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            46778877653      358888886 9999999986433222222111 112333333211123578889999998766


Q ss_pred             ECC--CceeE---EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCC--eEEEE
Q 048118          155 NLS--NCKLR---ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCA  227 (303)
Q Consensus       155 d~~--~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~  227 (303)
                      .+.  ++++.   ..+-+ ..++.-..+...+..-+.+..++...++.-+..-....+.....-....|+...  .-++.
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~  711 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLAL  711 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEE
Confidence            543  44432   22333 345554445444443333333455545543322222222333333444565432  22334


Q ss_pred             EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          228 ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       228 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      .+++.++|..+..-.....-++++.                   ..+..++++|+.+.++++..
T Consensus       712 ~~~~~LrI~~i~~~~~~~~~~ipL~-------------------~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          712 ANNSTLTIGTIDEIQKLHIRTVPLY-------------------ESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             ECSSCEEEEEECCSSSEEEEEEECS-------------------SEEEEEEEEGGGTEEEEEEE
T ss_pred             EcCCceEEEEecccCCeeEEEEeCC-------------------CCceEEEEcCCCCEEEEEEE
Confidence            5566788887754322211111111                   12356778887776665543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.86  E-value=7.5  Score=32.12  Aligned_cols=107  Identities=15%  Similarity=0.057  Sum_probs=58.9

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC----CCCccceEEEEEcCCCC--CCEEEEE--eCCCcEEE
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG----DAHTEWVSCVRFSPNTL--QPTIVSA--SWDRTVKV  153 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~--~~~~~~~--~~dg~i~i  153 (303)
                      ...+.|+|.|+|.++++--..+.|++++..+.....+...    .........++++|+-.  ....++-  ..+..|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4678999999999887766589898887543222111111    11234578899999511  1122221  23445555


Q ss_pred             EECCCc----------ee-EEEEcC-CCCCeeEEEECCCCCEEEEEe
Q 048118          154 WNLSNC----------KL-RATLAG-HTGYVNTVAVSPDGSLCASGG  188 (303)
Q Consensus       154 wd~~~~----------~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~  188 (303)
                      |.+...          +. ...+.. ....-..+.|.|+|.+.++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            655431          11 112221 111235689999998776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.67  E-value=7.6  Score=31.95  Aligned_cols=113  Identities=9%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             EEEEEeCCCcEEEEecC-CceeeeeecCCCCccceEEEEEcCCCCCCEEEEE--eCCCcEEEEECCCceeEEEEcC----
Q 048118           95 QIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA--SWDRTVKVWNLSNCKLRATLAG----  167 (303)
Q Consensus        95 ~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~dg~i~iwd~~~~~~~~~~~~----  167 (303)
                      .++.++.||.|.-.|.. ++.++.....  ...++....-........++.+  ..||.+..++..++.....+..    
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            56778888888888754 3344443221  1011111110000001133333  5899999999887754433321    


Q ss_pred             CCCCeeE---EEE-C----CCCCEEEEEeCCCeEEEEeCCCCceEEEecC
Q 048118          168 HTGYVNT---VAV-S----PDGSLCASGGKDGVILLWDLAEGKRLYSLDA  209 (303)
Q Consensus       168 ~~~~i~~---~~~-~----~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  209 (303)
                      ...++..   ..+ .    ..+..+.+|+.+|++...|+++|+.+..+..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1122221   000 0    1345778999999999999999998887753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.77  E-value=11  Score=32.46  Aligned_cols=107  Identities=13%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC-C-----CCccceEEEEEcCCCC--CCEEEEEeC------
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-D-----AHTEWVSCVRFSPNTL--QPTIVSASW------  147 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~-----~~~~~i~~~~~~~~~~--~~~~~~~~~------  147 (303)
                      ...+.|+|.|+|.++++-...+.|++++........+... .     ........++|+|+-.  ..+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3567999999998777654445688776432211111111 1     1234577899999521  112222221      


Q ss_pred             ------CCcEEEEECCCc--ee------EEEEcC-CCCCeeEEEECCCCCEEEEEe
Q 048118          148 ------DRTVKVWNLSNC--KL------RATLAG-HTGYVNTVAVSPDGSLCASGG  188 (303)
Q Consensus       148 ------dg~i~iwd~~~~--~~------~~~~~~-~~~~i~~~~~~~~~~~l~~~~  188 (303)
                            ...|.-++....  +.      ...+.. .......++|.|+|.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  124555554321  11      111221 112367899999998776644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.57  E-value=8.3  Score=30.92  Aligned_cols=105  Identities=10%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             CCCEEEEEeCC--------CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC-C-----CcEEEEECC
Q 048118           92 DNRQIVSASRD--------RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-D-----RTVKVWNLS  157 (303)
Q Consensus        92 ~~~~l~t~~~d--------~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-d-----g~i~iwd~~  157 (303)
                      ++..++.|+.+        ..+.+||....................++..  ++  ..++.|+. +     ..+.+||..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MD--LVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT--EEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CC--EEEEEeCCCCCCcccceEEEEeCC
Confidence            55666666632        3477788765433222211111111122222  21  24555655 2     468899988


Q ss_pred             CceeEEEEcCCCC--CeeEEEECCCCCEEEEEeCCC-----eEEEEeCCCCc
Q 048118          158 NCKLRATLAGHTG--YVNTVAVSPDGSLCASGGKDG-----VILLWDLAEGK  202 (303)
Q Consensus       158 ~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~  202 (303)
                      +.+....-.....  ....+.+  +++.++.|+.++     .+.++|+.+.+
T Consensus       174 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          174 KFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            7654322111111  1122222  567777777654     57788887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.54  E-value=9.4  Score=31.49  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-------cCCCCCeeEEEECCC---CCEE-EEEeC-------
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-------AGHTGYVNTVAVSPD---GSLC-ASGGK-------  189 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~---~~~l-~~~~~-------  189 (303)
                      ...++|.|++..  ++.+...|.|++++.. ++....+       .........++++|+   +..| ++-+.       
T Consensus        20 P~~i~~~pdG~~--l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           20 PWALAFLPDNHG--MLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             EEEEEECSTTCC--EEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             cEEEEEcCCCCE--EEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            467889998621  4556678999999853 3221111       112345688999995   4444 43332       


Q ss_pred             CCeEEEEeCCCC-------ceEEE-ecC----CCeEEEEEEcCCCeEEEEE
Q 048118          190 DGVILLWDLAEG-------KRLYS-LDA----GAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       190 d~~v~iwd~~~~-------~~~~~-~~~----~~~v~~~~~s~~~~~l~~~  228 (303)
                      ..+|..+++...       +.+.. +..    ......++|.|++.+.++.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            235666665432       11111 111    1224568999999665554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=86.77  E-value=11  Score=30.18  Aligned_cols=106  Identities=9%  Similarity=0.109  Sum_probs=52.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-----CcEEEEECCCcee
Q 048118           92 DNRQIVSASRD-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-----RTVKVWNLSNCKL  161 (303)
Q Consensus        92 ~~~~l~t~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-----g~i~iwd~~~~~~  161 (303)
                      ++.+++.|+.+     ..+.+||..................-.++.+  ++  ..++.|+.+     ..+.+||+.+.+.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR--LLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT--EEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC--EEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            55666666643     3466777755433322111111111122222  22  245555544     4588999877654


Q ss_pred             EEE--EcCCCCCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCce
Q 048118          162 RAT--LAGHTGYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKR  203 (303)
Q Consensus       162 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~  203 (303)
                      ...  +.........+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       197 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          197 RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            321  1111111222333  56677777754     4688899877653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.44  E-value=11  Score=29.99  Aligned_cols=103  Identities=14%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             EEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC----CcEEEEECCCceeEEEEcCC
Q 048118           95 QIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD----RTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        95 ~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d----g~i~iwd~~~~~~~~~~~~~  168 (303)
                      +++.|+.  ...+.+||........+...........++..  ++  ..++.|+.+    ..+.+||..+++....-...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN--VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT--EEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC--EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            4445554  35677888765543332211111111122222  21  245566654    56888998877644322111


Q ss_pred             C--CCeeEEEECCCCCEEEEEeCC------CeEEEEeCCCCce
Q 048118          169 T--GYVNTVAVSPDGSLCASGGKD------GVILLWDLAEGKR  203 (303)
Q Consensus       169 ~--~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~  203 (303)
                      .  .....+.+  +++.++.|+.+      ..+.+||+.+.+-
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            1  11222222  56677777765      4688889887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=84.40  E-value=14  Score=29.45  Aligned_cols=144  Identities=10%  Similarity=0.095  Sum_probs=67.1

Q ss_pred             CCCEEEEEeC----C-----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-----CcEEEEECC
Q 048118           92 DNRQIVSASR----D-----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-----RTVKVWNLS  157 (303)
Q Consensus        92 ~~~~l~t~~~----d-----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-----g~i~iwd~~  157 (303)
                      ++.+++.|+.    +     ..+.+||........+...........++.+  ++  ..++.|+.+     ..+.+||..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG--HIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT--EEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CC--EEEEEcCCCCCcccccEEEECCC
Confidence            5556666665    2     3567778765443322211111111122222  22  244555433     468889987


Q ss_pred             CceeEEE--EcCCCCCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceEEE--ecCCCeEEEEEEcCCCeEE-EE
Q 048118          158 NCKLRAT--LAGHTGYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGKRLYS--LDAGAVIHALCFSPNRYWL-CA  227 (303)
Q Consensus       158 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l-~~  227 (303)
                      +.+....  +.........+.+  +++.++.|+.+     ..+.++|+.+.+-...  ....-.-.+++.. ++.++ ..
T Consensus       146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G  222 (308)
T 1zgk_A          146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAG  222 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred             CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEe
Confidence            7654322  1111111122223  56677777654     4578888876643211  1111111122222 44444 33


Q ss_pred             EcC-----CcEEEEeCCCCc
Q 048118          228 ATE-----QSIKIWDLESKS  242 (303)
Q Consensus       228 ~~~-----~~i~iwd~~~~~  242 (303)
                      +.+     ..+.+||+++.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCc
Confidence            332     568899987653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.22  E-value=14  Score=29.46  Aligned_cols=93  Identities=12%  Similarity=0.110  Sum_probs=44.8

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCe-eEEEECCCCCEEEEEeC-C-----CeEEEEeCCCCceEEE--ecCCCeEEEEEEc
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYV-NTVAVSPDGSLCASGGK-D-----GVILLWDLAEGKRLYS--LDAGAVIHALCFS  219 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~-d-----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s  219 (303)
                      ..+.+||..+++....-.-..... .++.. .+++.++.|+. +     ..+.++|+.+.+-...  ....-.-.+++..
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  195 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH  195 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE
Confidence            458899988765432111111111 12222 34567777775 2     3688888877643221  1111111122222


Q ss_pred             CCCeEEEEEcCC-----cEEEEeCCCCc
Q 048118          220 PNRYWLCAATEQ-----SIKIWDLESKS  242 (303)
Q Consensus       220 ~~~~~l~~~~~~-----~i~iwd~~~~~  242 (303)
                      .+..++.++.++     .+.+||.++.+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            333444444332     58888887653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=82.36  E-value=17  Score=29.02  Aligned_cols=52  Identities=17%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             CcEEEEECCCceeEEEEcCCC--CCeeEEEECCCCCEEEEEeCC-----CeEEEEeCCCCc
Q 048118          149 RTVKVWNLSNCKLRATLAGHT--GYVNTVAVSPDGSLCASGGKD-----GVILLWDLAEGK  202 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~  202 (303)
                      ..+.+||..+++....-....  .....+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus       175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             ceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            458899998776443211111  11122222  46677777643     256688887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=80.53  E-value=18  Score=36.08  Aligned_cols=87  Identities=7%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA  228 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  228 (303)
                      ..|.|.|+.++.....   ..-..-+..++|..+.+|.-. ..+++|+|+.+.+++..+.....|.=-.|-. ...++.-
T Consensus        48 ~~vvIidl~~~~~~~r---rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis-~~~l~lV  122 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIR---RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALV  122 (1630)
T ss_pred             ceEEEEECCCCCCccc---ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecC-CCeeEEE
Confidence            3677778866432211   111223456789888777664 6899999999988887776655554444533 3456777


Q ss_pred             cCCcEEEEeCCC
Q 048118          229 TEQSIKIWDLES  240 (303)
Q Consensus       229 ~~~~i~iwd~~~  240 (303)
                      ++..|+-|++..
T Consensus       123 T~~aVyHW~~~~  134 (1630)
T 1xi4_A          123 TDNAVYHWSMEG  134 (1630)
T ss_pred             cCCeEEEeccCC
Confidence            788999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-27
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-24
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 5e-28
 Identities = 79/337 (23%), Positives = 133/337 (39%), Gaps = 76/337 (22%)

Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           K  +  H   VT +        ++V+AS D +I VW         G   R L GH+  VQ
Sbjct: 10  KYALSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYET-----GDFERTLKGHTDSVQ 63

Query: 68  DVVLSSDGQ------------------------FVGHTKDVLSVAFSIDNRQIVSASRDR 103
           D+     G+                          GH  +V SV+   +   IVSASRD+
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA 163
           TIK+W    +  Y ++    H EWV  VR + +     I S S D+TV+VW ++  + +A
Sbjct: 124 TIKMWEV--QTGYCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVVATKECKA 179

Query: 164 TLAGHTGYVNTVA--------------------VSPDGSLCASGGKDGVILLWDLAEGKR 203
            L  H   V  ++                        G    SG +D  I +WD++ G  
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

Query: 204 LYSLDA-GAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEAT 261
           L +L      +  + F    ++ L  A ++++++WD ++K  ++                
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---------------- 283

Query: 262 TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
               T+     + TSL++      + +G  D  ++VW
Sbjct: 284 ----TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 1e-27
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 14/191 (7%)

Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
           T   H + V  +  P  +  +I + S D+++ VW +  +E      +  L  H H V+ +
Sbjct: 138 TFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKEC-----KAELREHRHVVECI 191

Query: 70  VLSSDGQF--VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTE 126
             + +  +  +       +         ++S SRD+TIK+W+ + G C  T+     H  
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDN 248

Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
           WV  V F        I+S + D+T++VW+  N +   TL  H  +V ++          +
Sbjct: 249 WVRGVLFHSG--GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 187 GGKDGVILLWD 197
           G  D  + +W+
Sbjct: 307 GSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.9 bits (229), Expect = 2e-22
 Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
           F GH + V  V  + D   I S S D+T+++W      K    E   H   V C+ ++P 
Sbjct: 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV--ATKECKAELREHRHVVECISWAPE 196

Query: 137 TLQ------------------PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS 178
           +                    P ++S S D+T+K+W++S      TL GH  +V  V   
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 179 PDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATE-QSIKIW 236
             G    S   D  + +WD    + + +L+A    + +L F     ++   +  Q++K+W
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

Query: 237 D 237
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 25/171 (14%)

Query: 152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-- 209
           K W       +  L+GH   V  V   P  S+  S  +D  I +WD   G    +L    
Sbjct: 1   KEWIPRP-PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 210 ----------------------GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 247
                                    +           +         +  + +   +   
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
             D   +  + +      T      +   +  + DG+ + S   D  +RVW
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (264), Expect = 3e-27
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
           F GH  D+ ++ F  +     + S D T +L++   + +      D     ++ V FS +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
                +++   D    VW+         LAGH   V+ + V+ DG   A+G  D  + +W
Sbjct: 282 --GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

Query: 197 D 197
           +
Sbjct: 340 N 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.0 bits (245), Expect = 2e-24
 Identities = 52/321 (16%), Positives = 104/321 (32%), Gaps = 53/321 (16%)

Query: 5   LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
           +  + T+R H   + A+    D+  ++V+AS+D  +I+W      K        +   S 
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKV-----HAIPLRSS 98

Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAH 124
           +V     +  G +V         +      +  +    R +        C   + +    
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 125 TEWVSC-----------------------VRFSPNTLQPTIVSASWDRTVKVWNLSNCKL 161
           T                            +  S        VS + D + K+W++     
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218

Query: 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV---IHALCF 218
           R T  GH   +N +   P+G+  A+G  D    L+DL   + L +     +   I ++ F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 219 SPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL 277
           S + R  L    + +  +WD                             +   +   + L
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRA--------------------GVLAGHDNRVSCL 318

Query: 278 NWSVDGSTLFSGYTDGVIRVW 298
             + DG  + +G  D  +++W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 28/127 (22%)

Query: 7   LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
            + T   H   + AI     N +   T S D +  ++ L  +++    +          +
Sbjct: 218 CRQTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDN---IICGI 273

Query: 67  QDVVLSSDGQFV------------------------GHTKDVLSVAFSIDNRQIVSASRD 102
             V  S  G+ +                        GH   V  +  + D   + + S D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333

Query: 103 RTIKLWN 109
             +K+WN
Sbjct: 334 SFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.9 bits (242), Expect = 7e-24
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 27  NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
           +   I   S D+++ VW                   + F+ + + S +    GH   V S
Sbjct: 216 DGKYIAAGSLDRAVRVWDS----------------ETGFLVERLDSENESGTGHKDSVYS 259

Query: 87  VAFSIDNRQIVSASRDRTIKLWNT----------LGECKYTIQEGDAHTEWVSCVRFSPN 136
           V F+ D + +VS S DR++KLWN                        H ++V  V  + N
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319

Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV------SPDGSLCASGGKD 190
                I+S S DR V  W+  +      L GH   V +VAV       P+ ++ A+G  D
Sbjct: 320 --DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 191 GVILLWDL 198
               +W  
Sbjct: 378 CKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.4 bits (238), Expect = 3e-23
 Identities = 56/344 (16%), Positives = 107/344 (31%), Gaps = 80/344 (23%)

Query: 14  HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSS 73
           HT +V  +     N    +    +K+  V+ ++           RL+  S   +D    +
Sbjct: 61  HTSVVCCVK--FSNDGEYLATGCNKTTQVYRVSDGSLV-----ARLSDDSAANKDPENLN 113

Query: 74  DGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL---------------------- 111
                     + SV FS D + + + + DR I++W+                        
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 112 -------GECKYTIQEGDAHTEWVSCVRFSPNTLQ---------PTIVSASWDRTVKVWN 155
                  G    T++  D  T   S      + +            I + S DR V+VW+
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 156 LSNCKLRATL-------AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL---- 204
                L   L        GH   V +V  + DG    SG  D  + LW+L          
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

Query: 205 ---------YSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTE 254
                      +     + ++  + N  Y L  + ++ +  WD +S + +  L+      
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ------ 347

Query: 255 AEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
             ++   +               +   + +   +G  D   R+W
Sbjct: 348 GHRNSVISVA--------VANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 2e-19
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 27/176 (15%)

Query: 89  FSIDNRQIVSASRDRTIKLWNTL-GECKYTIQE----GDAHTEWVSCVRFSPNTLQPTIV 143
              D + I + S DR +++W++  G     +      G  H + V  V F+ +    ++V
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD--GQSVV 270

Query: 144 SASWDRTVKVWNLSNCKLRA------------TLAGHTGYVNTVAVSPDGSLCASGGKDG 191
           S S DR+VK+WNL N   ++            T  GH  +V +VA + +     SG KD 
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

Query: 192 VILLWDLAEGKRLYSLD-------AGAVIHALCFSPNRYWLCAATE-QSIKIWDLE 239
            +L WD   G  L  L        + AV +     P        +     +IW  +
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 48/288 (16%), Positives = 99/288 (34%), Gaps = 74/288 (25%)

Query: 76  QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGD------------- 122
           + + HT  V  V FS D   + +   ++T +++             D             
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 123 ---AHTEWVSCVRFSPN----------------------------------------TLQ 139
              +   ++  V FSP+                                           
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 199
             +VS S DRTV++W+L   +   TL+   G         DG   A+G  D  + +WD  
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 200 EGKRLYSLDAGAV--------IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVD 250
            G  +  LD+           ++++ F+ +   + + +  +S+K+W+L++ +        
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN-------- 287

Query: 251 LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
            K++++   + T   T      +  S+  + +   + SG  D  +  W
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 164 TLAGHTGYVNTVAVSPDGSLCA---SGGKDGVILLWDLAEGKRL-----YSLDAGAVIHA 215
             A H+  +    +  D            +   +L++ A  + +      SLD  +V+  
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 216 LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT 275
           + FS +  +L     ++ +++ +   S+V  L  D  + A K      T++    ++Y  
Sbjct: 68  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDD--SAANKDPENLNTSSSPSSDLYIR 125

Query: 276 SLNWSVDGSTLFSGYTDGVIRVW 298
           S+ +S DG  L +G  D +IR+W
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIW 148

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 26/122 (21%)

Query: 139 QPTIVSASWDRTVKVWNLS-----NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVI 193
            P  +    +    ++N +     + +L  +L  HT  V  V  S DG   A+G  +   
Sbjct: 28  VPDALKKQTNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTT 85

Query: 194 LLWDLAEGKRLYSLDA-------------------GAVIHALCFSPNRYWLCAATEQSIK 234
            ++ +++G  +  L                        I ++CFSP+  +L    E  + 
Sbjct: 86  QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145

Query: 235 IW 236
             
Sbjct: 146 RI 147

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 1e-17
 Identities = 67/306 (21%), Positives = 106/306 (34%), Gaps = 48/306 (15%)

Query: 14  HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV------- 66
            +  V  +     +   IV+  RD +I +W            +R LTGH+  V       
Sbjct: 14  TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNT-----LECKRILTGHTGSVLCLQYDE 65

Query: 67  -------------QDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN-TLG 112
                           V + +            +    +N  +V+ S+DR+I +W+    
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 113 ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV 172
                 +    H   V+ V F    +     SAS DRT+KVWN S C+   TL GH   +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQS 232
             +       L  SG  D  I LWD+  G  L  L+    +       N+  +  A +  
Sbjct: 182 ACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD 292
           IK+WDL +                    T    T+ + +     L +  D   + S   D
Sbjct: 240 IKVWDLVAALDPRAPA-----------GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286

Query: 293 GVIRVW 298
             I +W
Sbjct: 287 DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 7e-11
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 89  FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148
               +R +VS S D TI+LW+        + EG                    IVS ++D
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN------KRIVSGAYD 237

Query: 149 RTVKVWNL---------SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
             +KVW+L         +      TL  H+G V    +  D     S   D  IL+WD
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 6e-10
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 117 TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVA 176
            I      ++ V C+++    +    VS   D T+K+W+ +  + +  L GHTG V  + 
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKI----VSGLRDNTIKIWDKNTLECKRILTGHTGSV--LC 60

Query: 177 VSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIW 236
           +  D  +  +G  D  + +WD+  G+ L +L             N   +  + ++SI +W
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 237 DLESKSIVEDLKVDLKTEAEKS---------------------EATTATTTIKKKNIYCT 275
           D+ S + +   +V +   A  +                       +T             
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 276 SLNWSVDGSTLFSGYTDGVIRVW 298
                     + SG +D  IR+W
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 6e-09
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 92  DNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150
           D++ IVSAS DRTIK+WNT   E   T+     H   ++C+++    +    VS S D T
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRDRLV----VSGSSDNT 199

Query: 151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG 210
           +++W++        L GH        +  D     SG  DG I +WDL       +    
Sbjct: 200 IRLWDIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257

Query: 211 AVIHAL--------CFSPNRYWLCAATE-QSIKIWD 237
             +  L            + + + +++   +I IWD
Sbjct: 258 LCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 7e-06
 Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 11  MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV 70
           +R        +     ++  IV+ + D  I VW L         A               
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR--------- 261

Query: 71  LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 109
                  V H+  V  + F  D  QIVS+S D TI +W+
Sbjct: 262 -----TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 3e-16
 Identities = 55/303 (18%), Positives = 100/303 (33%), Gaps = 42/303 (13%)

Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
            ++ H D V          + IV+ S D ++ VW         G   R L GH+  V   
Sbjct: 11  VLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVT-----GKCLRTLVGHTGGVWSS 63

Query: 70  VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVS 129
            +  +    G T   L V  +     I +     +      L E +      DA      
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 130 CVRFSPNTL--------------QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 175
                   +                 +VS ++D  VKVW+        TL GHT  V ++
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 183

Query: 176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKI 235
               DG    SG  D  I +WD+  G  +++L     + +     +   +    + ++KI
Sbjct: 184 --QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 241

Query: 236 WDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVI 295
           WD+++   ++ L+                                 + + + +   DG +
Sbjct: 242 WDIKTGQCLQTLQ-------------------GPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 296 RVW 298
           ++W
Sbjct: 283 KLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 1e-15
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 20/177 (11%)

Query: 76  QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
              GHT  V S+ F  D   +VS S D +I++W+   E    I     H    S +    
Sbjct: 172 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV--ETGNCIHTLTGHQSLTSGMELKD 227

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV-SPDGSLCASGGKDGVIL 194
           N L    VS + D TVK+W++   +   TL G   + + V     + +   +   DG + 
Sbjct: 228 NIL----VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 195 LWDLAEGKRLYSLDA------GAVIHALCFSPNRYWLCAAT-----EQSIKIWDLES 240
           LWDL  G+ + +L        G V+  +  S  +      +     E  + + D + 
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 5e-15
 Identities = 54/311 (17%), Positives = 98/311 (31%), Gaps = 42/311 (13%)

Query: 7   LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
              T+  HT  V +     +      T    K             YG        H H  
Sbjct: 49  CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 67  QDVVLSSDGQ------------FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC 114
           + V  S D               V             D R++VS + D  +K+W+   E 
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP--ET 166

Query: 115 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNT 174
           +  +     HT  V  ++F        +VS S D +++VW++       TL GH    + 
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS- 221

Query: 175 VAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA---VIHALCFSPNRYWLCAATEQ 231
             +    ++  SG  D  + +WD+  G+ L +L                  + + ++ + 
Sbjct: 222 -GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 280

Query: 232 SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT 291
           ++K+WDL++   + +L                T            +  S        G  
Sbjct: 281 TVKLWDLKTGEFIRNLV---------------TLESGGSGGVVWRIRASNTKLVCAVGSR 325

Query: 292 DG----VIRVW 298
           +G     + V 
Sbjct: 326 NGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 8e-15
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 39/182 (21%)

Query: 27  NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
           +   +V+ S D SI VW +      +                                L+
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIH-------------------------TLTGHQSLT 220

Query: 87  VAFSIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
               + +  +VS + D T+K+W+   G+C  T+Q  + H   V+C++F+ N     ++++
Sbjct: 221 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITS 276

Query: 146 SWDRTVKVWNLSNCKLRATL-----AGHTGYVNTVAVSPDGSLCASGGKDG----VILLW 196
           S D TVK+W+L   +    L      G  G V  +  S    +CA G ++G     +L+ 
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 197 DL 198
           D 
Sbjct: 337 DF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 6e-11
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 108 WNTL-GECKYTIQEGDAHTEWV-SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL 165
           W     +    ++    H + V +C++F  N +    VS S D T+KVW+    K   TL
Sbjct: 1   WRRGELKSPKVLK---GHDDHVITCLQFCGNRI----VSGSDDNTLKVWSAVTGKCLRTL 53

Query: 166 AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL 225
            GHTG V +  +  +  +  S  +   +   +  E           V         +  +
Sbjct: 54  VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC--MHLHEKRVV 111

Query: 226 CAATEQSIKIWDLESKSIVEDLK------VDLKTEAEKSEATTATTTIKKKNIYCTSL-- 277
             + + ++++WD+E+   +  L         ++ +  +  +      +K  +    +   
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171

Query: 278 ----------NWSVDGSTLFSGYTDGVIRVW 298
                     +   DG  + SG  D  IRVW
Sbjct: 172 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.6 bits (176), Expect = 4e-15
 Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 12/232 (5%)

Query: 80  HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139
             + +   A++ D  QI     +  + ++   G     + E   H   V+ V ++P++  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-- 63

Query: 140 PTIVSASWDRTVKVWNLSNC--KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
             IV+   DR   VW L     K    +         V  +P+    A G    VI +  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 198 LAEGKR------LYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDL 251
             +         +       V+       +      + +   +I+    K + E      
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY 303
                        ++     ++    + +       S      + +    + 
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD--STVCLADADKK 233

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 7e-10
 Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 29/289 (10%)

Query: 14  HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSS 73
             + ++  A   D +  I     +  + ++  +  +                        
Sbjct: 6   LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNK---------------------WVQ 43

Query: 74  DGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRF 133
             +   H   V  V ++ D+ +IV+   DR   +W   G                 CVR+
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 134 SPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY----VNTVAVSPDGSLCASGGK 189
           +PN  +      S  R + +                      V ++   P+  L A+G  
Sbjct: 104 APN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161

Query: 190 DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKV 249
           D    ++     +             + F    +   ++      +    + S V  +  
Sbjct: 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221

Query: 250 DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
           D       ++   A  T+  + +   ++ +  + S + +G+ D    ++
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 16/221 (7%)

Query: 35  SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR 94
           S D    ++    +E     A         F +        +       V  V FS +  
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE-----LMFESSSSCGWVHGVCFSANGS 214

Query: 95  QIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW 154
           ++   S D T+ L +   + K  +    + T  +  V F   +   ++V+A  D    ++
Sbjct: 215 RVAWVSHDSTVCLADA--DKKMAVATLASETLPLLAVTFITES---SLVAAGHDCFPVLF 269

Query: 155 NLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH 214
              +   + +  G        +     +       D        A             + 
Sbjct: 270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 329

Query: 215 ALCFSPNRYWLC-----AATEQSIKIWDLES-KSIVEDLKV 249
            +         C        +  + IWD+ S +S ++DLK+
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKI 370

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 49/295 (16%), Positives = 96/295 (32%), Gaps = 6/295 (2%)

Query: 5   LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSH 64
            V    ++ H   VT +    D S+ IVT   D++  VW L        +   R+   + 
Sbjct: 41  WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 65  FVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAH 124
            V+             ++ +    F  +N   V     + I+      +         A 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 125 TEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLC 184
           +    C  FS    +   V      T     +   +L    +   G+V+ V  S +GS  
Sbjct: 160 SCDFKCRIFSAYIKE---VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216

Query: 185 ASGGKDGVILLWDLAEGKRL-YSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSI 243
           A    D  + L D  +   +         + A+ F      + A  +    ++  +S + 
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG 276

Query: 244 VEDLKVDLKTEAEKSEAT-TATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRV 297
                  L    + S+   TA    +  +   +S   +  G+ L S + + V ++
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 1e-14
 Identities = 37/321 (11%), Positives = 97/321 (30%), Gaps = 49/321 (15%)

Query: 12  RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVAR-RRLTGHSHFVQDVV 70
           +AH   + +++     +   V+ S D  + VW     +      +      H   +  V 
Sbjct: 11  KAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 71  LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN--------TLGECKYTIQEGD 122
           +    +             + +   + + S    +  +          +   K  + + D
Sbjct: 68  VLQAIER-----------DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD 116

Query: 123 AHTEWVSCVRFSPNTLQP---TIVSASWDRTVKVWNLSNCK------------------L 161
                   +++  +  +     +V+     T  +W                         
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN 221
             +    + +  +V +S  G L A+G  +G + + +L+  + LY+ ++   +     S  
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 222 RYWLCAATEQ----SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL 277
                                       +    + + +  + ++ A+      + +  SL
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 278 NWSVDGSTLFSGYTDGVIRVW 298
           +++  G TL S   DG +R W
Sbjct: 296 SFNDSGETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 6e-14
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 37/212 (17%)

Query: 117 TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA------GHTG 170
           T   G AH   +  V    +      VS S D  +KVW+                  H  
Sbjct: 6   TANAGKAHDADIFSVSACNSFT----VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 171 YVNTVAV-------SPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-----------GAV 212
            ++ V V       + +  L A+    G +L + +        +                
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 213 IHALCFSPN------RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTT 266
             AL +  +         +    + +  IW     +  ++        +   E      +
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA--DESNSLTLNWSPTLELQGTVES 179

Query: 267 IKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
               + + TS++ S  G  + +G+ +G +++ 
Sbjct: 180 PMTPSQFATSVDISERG-LIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 9e-13
 Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 26  DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL 85
             S  +V      +  +W                +        V        +  ++   
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV-----ESPMTPSQFAT 188

Query: 86  SVAFSIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVR-FSPNTLQPTIV 143
           SV  S     I +   + T+++   +     Y  +   +     + +R    +     + 
Sbjct: 189 SVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 144 SASWDRTVKVWNLSNC----------------KLRATLAGHTGYVNTVAVSPDGSLCASG 187
            A    +     L                   +       H+ +V +++ +  G    S 
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 188 GKDGVILLWDLAEGKRLYSLDA-----GAVIHALCFSPNRYWLCAATEQSIKIWDLESKS 242
           G DG +  WD+   +R+ +L+            L    +   L       +K      +S
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 367

Query: 243 IV 244
            +
Sbjct: 368 GM 369

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 8e-10
 Identities = 48/321 (14%), Positives = 101/321 (31%), Gaps = 51/321 (15%)

Query: 14  HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL-----TGHSHFVQD 68
           H D++ AI        ++ T S    ++ + +T+E++T  V   +L         H    
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 69  VVLSSDGQFVGHTKDVLSVA---FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHT 125
           +   +    +   + V +       I      +   +     W+   E + T++     +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 126 EWVSCVRFSPNTLQPTIVSASWDRTVKVWN------LSNCKLRATLAGHTGYVNTVAVSP 179
           ++ + V  S   L   I +   + TV++        L N + + ++  ++  + +V  SP
Sbjct: 185 QFATSVDISERGL---IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 180 DGSLCASGGKDGVILL---WDLAEGKRLYSLDA---------------GAVIHALCFSPN 221
            GSL A             ++   G+R+ SL                   V+        
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301

Query: 222 RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV 281
                A  +  ++ WD+++K  +  L                        I    L    
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLN----------------MHCDDIEIEEDILAVDE 345

Query: 282 DGSTLFSGYTDGVIRVWGIGR 302
            G +L       V  +    R
Sbjct: 346 HGDSLAEPGVFDVKFLKKGWR 366

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 13/182 (7%), Positives = 36/182 (19%), Gaps = 21/182 (11%)

Query: 29  DMIVTASRDKSIIVWHLTKEEKTY--GVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
             +   S               ++        +           L               
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT--------- 241

Query: 87  VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
                +  +       +     N        I   ++     S               A 
Sbjct: 242 ----SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA--YYQGAP 295

Query: 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS 206
               +  +++   K+          +  + +S D         DG I  + L + +   +
Sbjct: 296 EKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

Query: 207 LD 208
           ++
Sbjct: 352 VE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (161), Expect = 4e-13
 Identities = 21/203 (10%), Positives = 53/203 (26%), Gaps = 14/203 (6%)

Query: 62  HSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT-----LGECKY 116
            +  V D+                + AF  D++ +   S        +        E   
Sbjct: 159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 218

Query: 117 TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-----SNCKLRATLAGHTGY 171
                       +  +  P ++         +   K  +       + ++   L      
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN-RYWLCAATE 230
            +        +      + GV+L +D+   K     +    +  L  S + +  +    +
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDD 335

Query: 231 QSIKIWDLESKSIVEDLKVDLKT 253
             I  + LE       ++ D + 
Sbjct: 336 GKIYTFPLEKPEDERTVETDKRP 358

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 30/299 (10%), Positives = 70/299 (23%), Gaps = 45/299 (15%)

Query: 16  DMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG 75
           D  T  A   + +   V A        + +   ++   +     TG    ++    +   
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131

Query: 76  QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
            F                         + I +++  G   +        TE       + 
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-----TTENSHDYAPAF 186

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRA-------TLAGHTGYVNTVAVSPDGSLCASG- 187
           +     +   S+       +                +    G  N   + P      +G 
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246

Query: 188 ----GKDGVILLWDLAEGKR---LYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLE 239
                        ++  G     +    +  +           +   A E+  +  +D++
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 306

Query: 240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
           ++                 + T     +       T L  S D  T+     DG I  +
Sbjct: 307 TR-----------------KVTEVKNNL-------TDLRLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 16/216 (7%)

Query: 86  SVAFS-IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVS 144
           +  FS +D   I   SR +   + +  G   Y ++        +  VR   +T    I  
Sbjct: 7   AEDFSPLDGDLIAFVSRGQ-AFIQDVSG--TYVLKVP--EPLRIRYVRRGGDTKVAFIHG 61

Query: 145 ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 204
                 + +++    K       + G V  + V  +G               +       
Sbjct: 62  TREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVV---------ANDRFEIMT 111

Query: 205 YSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTAT 264
             L+ G                  ++ S  I         E     ++            
Sbjct: 112 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171

Query: 265 TTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                +N +  +  +  D   L+      +      
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 16/223 (7%), Positives = 45/223 (20%), Gaps = 27/223 (12%)

Query: 78  VGHTKDVLSVAFSIDNRQIVSASRD--RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
           V     +  V    D +            + +++         ++ + +   V  +    
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDR 95

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLR--------ATLAGHTGYVNTVAVSPDGSLCASG 187
           N     + +  ++            +                         P       G
Sbjct: 96  NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155

Query: 188 GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE-QSIKIWDLESKSIVED 246
                I ++D+   K   +    +  +A  F  +   L   +        D    +   +
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215

Query: 247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG 289
           +            +                        T  +G
Sbjct: 216 VVSKPFVIPLIPGSP-------------NPTKLVPRSMTSEAG 245

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 8e-14
 Identities = 32/310 (10%), Positives = 80/310 (25%), Gaps = 47/310 (15%)

Query: 14  HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSS 73
           H ++V A+         + T      + VW ++       V++       ++++   L  
Sbjct: 50  HGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 74  DGQFV----------------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL 111
           DG  +                                +++                   +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 112 GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY 171
            +                      +     + +   D TV+ W+L   +        T  
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQ 226

Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE- 230
           + ++   P G   A G +   + +  + +  +       + + +L F+    W  +  + 
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286

Query: 231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290
             +  W     + +   K                           S + SVD   + +G 
Sbjct: 287 NLLNAWRTPYGASIFQSKESSS---------------------VLSCDISVDDKYIVTGS 325

Query: 291 TDGVIRVWGI 300
            D    V+ +
Sbjct: 326 GDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 139 QPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 198
           Q   V    D  +      + +   TL  H   V  V +S       +GG  G + +WD+
Sbjct: 22  QMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79

Query: 199 AEGKRLYSL------DAGAVIHALCFSPNRYWLCAATEQSIKIW 236
           +       +      +    I +    P+   L    E S    
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 26/245 (10%)

Query: 79  GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC---KYTIQEGDAHTEWVSCVRFSP 135
            H + V +V  S   R + +      +K+W+          +  +      ++   +  P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
           +     +   +   ++        +++A L         +A+SPD  +C S   DG I +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 196 WDLAEGKRLYSLDAGAVIHALC-----------FSPNRYWLCAATEQSIKIWDLESKSIV 244
           WDL     +          +                +         +  ++   +  S +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 245 EDLKVD-----------LKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG 293
             L                              +        SL ++  G    S   D 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 294 VIRVW 298
           ++  W
Sbjct: 288 LLNAW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 24/85 (28%)

Query: 27  NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS 86
                V+  +D  +  W                                     +  VLS
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASI------------------------FQSKESSSVLS 311

Query: 87  VAFSIDNRQIVSASRDRTIKLWNTL 111
              S+D++ IV+ S D+   ++  +
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 172 VNTVAVSPDGSLCA-SGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATE 230
             +  V+ DG +       D +I        +++ +L+ G V+ A+  S     +    +
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK 71

Query: 231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290
             +K+WD+                   +++  +      ++ Y  S     DG TL  G 
Sbjct: 72  GCVKVWDISH---------------PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

Query: 291 TDGVIRVW 298
               + +W
Sbjct: 117 EASTLSIW 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 2e-13
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 9/182 (4%)

Query: 124 HTEWV-SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 182
           H   V +C++F  N +    ++ + D+ ++V++  N K    L+GH G V  +  +  G 
Sbjct: 11  HMTSVITCLQFEDNYV----ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 183 LCASGGKDGVILLWDLAEGKRLYSLDAGAV---IHALCFSPNRYWLCAATEQSIKIWDLE 239
           L +      V +                +    +  + +   +Y +  + + ++ +W L 
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL-NWSVDGSTLFSGYTDGVIRVW 298
            +S V D   +                +     +  S+   S  G+ + SG  D  + VW
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186

Query: 299 GI 300
            +
Sbjct: 187 DV 188

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 16/152 (10%), Positives = 49/152 (32%), Gaps = 6/152 (3%)

Query: 79  GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNT 137
           GH   V++     ++  +++ + D+ I++++++  +    +     H   V  ++++   
Sbjct: 10  GHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---GHDGGVWALKYAHGG 65

Query: 138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
           +  +  S      V       C         T     +    +     +G +D  + +W 
Sbjct: 66  ILVS-GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 198 LAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT 229
           L +   +           +  +P         
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 7e-08
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 28/165 (16%)

Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
           + T+R H   V          + ++T + DK I V+    ++                  
Sbjct: 5   RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--------------- 47

Query: 68  DVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEW 127
                   Q  GH   V ++ ++     +VS S DRT+++W+    C   + EG   T  
Sbjct: 48  --------QLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

Query: 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV 172
              +    N     IV+ S D T+ VW L              Y 
Sbjct: 99  CLDIVEYKN--IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 10/128 (7%), Positives = 31/128 (24%), Gaps = 2/128 (1%)

Query: 114 CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVN 173
             + ++ G+                       S      +            + H   ++
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 174 TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRYWLCAATEQ 231
            +            G +    +++L  GK +++        I ++ F           + 
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 345

Query: 232 SIKIWDLE 239
              +  L+
Sbjct: 346 QSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 48/270 (17%), Positives = 76/270 (28%), Gaps = 28/270 (10%)

Query: 29  DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA 88
             IVT SRD ++ VW L KE                   +      G   GH   V    
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RT 166

Query: 89  FSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD 148
            S     +VS S D T+ +W+        I  G     + +                  D
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS----MD 222

Query: 149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD 208
            T+++W+                     +        S   DG I  WD  +  R +S  
Sbjct: 223 TTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 280

Query: 209 AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIK 268
              +     F  +   L + +E    I++L S  +V                      I 
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH-------------------ANIL 321

Query: 269 KKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
           K      S+N+      + +   DG   + 
Sbjct: 322 KDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 66.3 bits (160), Expect = 5e-13
 Identities = 20/204 (9%), Positives = 48/204 (23%), Gaps = 5/204 (2%)

Query: 7   LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
               +R              +   +  A  D   +     K      +      G+S   
Sbjct: 134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPD 193

Query: 67  QDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTE 126
                         +       F  D +   +A         +      +T +  D    
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCAS 186
           + + +R   +              +  ++L   KL             VA    G     
Sbjct: 254 YFTGLRSPKDPN----QIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYL 308

Query: 187 GGKDGVILLWDLAEGKRLYSLDAG 210
           GG    + +++    +++ ++   
Sbjct: 309 GGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.4 bits (142), Expect = 9e-11
 Identities = 34/310 (10%), Positives = 72/310 (23%), Gaps = 64/310 (20%)

Query: 1   MAEGLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVAR-RRL 59
           +A   V K  +              DN    V  +    I    L   + T+        
Sbjct: 25  VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP 84

Query: 60  TGHSHFVQDVVLSSDGQFV--------------------------------------GHT 81
                 +    +S DG+ V                                         
Sbjct: 85  GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 144

Query: 82  KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG-------------------- 121
           + V  +  + D    V+      + +    G+    +                       
Sbjct: 145 RQVYLMRAADDGSLYVAGPDIYKMDVKT--GKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 122 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-AGHTGYVNTVAVSPD 180
             H   +          +    +A         +L   K      A  T    T   SP 
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 181 GSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLE 239
                 G     +  +DL + K + + +     + + F           T   + +++ +
Sbjct: 263 DPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 240 SKSIVEDLKV 249
           +   V+++K+
Sbjct: 322 TLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.7 bits (135), Expect = 9e-10
 Identities = 34/338 (10%), Positives = 79/338 (23%), Gaps = 90/338 (26%)

Query: 26  DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV------- 78
              + ++  +   ++ V  +     +  V +  +          +++ D +         
Sbjct: 6   AGHEYMIVTNYPNNLHVVDV----ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 79  ------------------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC 114
                                      + + S A S D +++ +          + + + 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 115 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV-------KVWNLSNCKLRATLAG 167
                   A       VR  P   Q  ++ A+ D ++          ++   K    L  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 168 HTG-------------------------YVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 202
                                                D    A+       L  DL  GK
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 203 RLYSLDA--GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEA 260
                 A    +      SP            +  +DL+ + +++   +D          
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH--------- 292

Query: 261 TTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
                           + +   G  L+ G T   + V+
Sbjct: 293 ------------TYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 12/118 (10%), Positives = 30/118 (25%), Gaps = 10/118 (8%)

Query: 87  VAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA 145
            A    +  ++  +    + + +        +                +P+  +   V  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDN-RTAYVLN 58

Query: 146 SWDRTVKVWNLSNCKLRATL------AGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
           +    +   +L  CK                 + + A+SPDG    +       L   
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 11/128 (8%), Positives = 27/128 (21%), Gaps = 6/128 (4%)

Query: 175 VAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQS 232
            A+               + + D+A     +   +           +P+           
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 233 --IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY 290
             I   DL++        +            +   +   K +Y T               
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT--VNPTQRLNDHYVV 119

Query: 291 TDGVIRVW 298
               + V+
Sbjct: 120 KPPRLEVF 127

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 6/98 (6%)

Query: 80  HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139
            T+   +   S  +   +    +R  K      +                CV F      
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH----TYYCVAFDKK--G 303

Query: 140 PTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV 177
             +        + V+N    +    +    G ++T   
Sbjct: 304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (153), Expect = 3e-12
 Identities = 22/200 (11%), Positives = 51/200 (25%), Gaps = 6/200 (3%)

Query: 9   GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD 68
            + R   +    I       D        + + V              +     ++   D
Sbjct: 125 LSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPD 184

Query: 69  VVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV 128
           V+   +                 D       +    +   + L   +  ++E      + 
Sbjct: 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD-LETGEMAMREVRIMDVFY 243

Query: 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGG 188
                +P        +      ++ ++L        +        +V VS DGS    GG
Sbjct: 244 FSTAVNPAK----TRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGG 298

Query: 189 KDGVILLWDLAEGKRLYSLD 208
             G +  +D    ++   +D
Sbjct: 299 ALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 17/169 (10%)

Query: 142 IVSASWDRTVKVWNLSNCKLRATLA--GHTGYVNTVAVSPDGS-LCASGGKDGVILLWDL 198
           I++ +    + V +     +   +             V+P G    A+  K   ++  DL
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 199 AEGKRLYSLDA------GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLK 252
             G+ L  +D          +     SP+   L                        D +
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG 301
           T + +           +     T L W+ DGS L+    D  +     G
Sbjct: 124 TLSRR--------KAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 31/331 (9%), Positives = 74/331 (22%), Gaps = 87/331 (26%)

Query: 29  DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---------- 78
           D I+  +R   ++V    K           +          +++  G+            
Sbjct: 2   DYILAPARPDKLVVIDTEKMAV---DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58

Query: 79  --------------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY-- 116
                                  K +   A S D + +        ++L +   +     
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 117 -------TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL------------- 156
                  + ++       ++ + ++ +     +     D  V                  
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARD--GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176

Query: 157 --------SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD 208
                            +             D            +L  DL  G+      
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 209 AGA-VIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTI 267
               V +                  ++ +DLE  + ++ + +                  
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH---------------- 280

Query: 268 KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
                   S+N S DGST++ G   G +  +
Sbjct: 281 -----SYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 10/176 (5%), Positives = 34/176 (19%), Gaps = 14/176 (7%)

Query: 11  MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKE-EKTYGVARRRLTGHSHFVQDV 69
            +             D   +         +     T   +          TG      + 
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228

Query: 70  VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWV 128
              +  +         S A +    +         ++ ++         +          
Sbjct: 229 GEMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRVP----LPHSY 282

Query: 129 SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA----GHTGYVNTVAVSPD 180
             V  S +    T+        +  ++    + +  +           +    + D
Sbjct: 283 YSVNVSTD--GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.1 bits (151), Expect = 5e-12
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALC 217
            +     GH   +  ++ S DG    S   +G I  WD++ G            +I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 218 FSPNRYWLCAATEQSIKIWDLESKSI 243
            +        + +  +K+       +
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.3 bits (136), Expect = 4e-10
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSP 135
             GH K + +++ S D + + SA  +  I  W+   G       +   H   ++ ++ + 
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--HATMITGIKTTS 65

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLR 162
              +  + + SWD  +KV       + 
Sbjct: 66  ---KGDLFTVSWDDHLKVVPAGGSGVD 89

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 4e-09
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 111 LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-GHT 169
           LG           H + ++ +  S +    T+ SA  +  +  W++S           H 
Sbjct: 1   LGSIDQVRY---GHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGISNRVFPDVHA 55

Query: 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 201
             +  +  +  G L      D + ++     G
Sbjct: 56  TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA--GHTGYVNTVAVSPDG 181
                     S +     + + S D +V VWN++       +    H        +  + 
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280

Query: 182 SLCASGGKDGVILLWDL 198
           +   S G+D  I  W++
Sbjct: 281 TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 1e-07
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 93  NRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV 151
           N ++ + S D ++ +WN         I +G      V+ V +   T   TIVSA  D  +
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQDSNI 292

Query: 152 KVWNLS 157
           K WN+ 
Sbjct: 293 KFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 2e-05
 Identities = 35/304 (11%), Positives = 80/304 (26%), Gaps = 20/304 (6%)

Query: 7   LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFV 66
           +      H   +TA+++  D    + +A  +  I  W ++         R     H+  +
Sbjct: 4   IDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISN----RVFPDVHATMI 58

Query: 67  QDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTE 126
             +  +S G     + D            + S+           LG       +      
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 127 WVSCVRFSPNTLQPTIVS---------ASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV 177
           +     +S   L    +S                     S   +          V T+  
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 178 SPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWD 237
             + +  A       ++  D +     YS+     +             A    S     
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 238 LESKSIVEDLKV-DLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR 296
           L + S+   + V ++   ++               +   +    ++ +T+ S   D  I+
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHP-----IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 297 VWGI 300
            W +
Sbjct: 294 FWNV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 35/341 (10%), Positives = 91/341 (26%), Gaps = 75/341 (21%)

Query: 10  TMRAHTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQD 68
             +A  D ++ I   P  +  +++  S D S+ V+    + K   +   +   + H +  
Sbjct: 6   IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDL--LQSLRYKHPLLC 61

Query: 69  VVLSSDGQFV----------------------------GHTKDVLSVAFSIDNRQIVSAS 100
                +                                 +        +  D     S  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 101 RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK 160
               +      G+    ++  +++   V    F+ +T    ++    +  V+ + L  C+
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 161 LRATLAGHTG----YVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH-- 214
                   +G      +   +  +    A    DG + +    +    Y+          
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 215 --------------ALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLKTEAEKSE 259
                         ++ FSP   +L  A     I  W+L+++  +++             
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF------------ 289

Query: 260 ATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 300
                     K    + +  +   + L    +D   +    
Sbjct: 290 ---------AKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 16/158 (10%)

Query: 102 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN--- 158
           +  ++ +             ++  ++           Q     +S D  V V    +   
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 159 ------------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS 206
                        +L          VN++  SP      + G DG+I  W+L   K++ +
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 207 LDAGAVIHALCFSPNRYWLCAATE-QSIKIWDLESKSI 243
                    +  + +   LC AT   + K      ++I
Sbjct: 289 FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 1e-11
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 117 TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL---AGHTGYVN 173
            +Q   A  +++S ++  P+  +  ++  SWD ++ V+          L     +   + 
Sbjct: 3   IVQIEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 174 TVAVSPDGSLCASGG 188
                 +  L    G
Sbjct: 61  CCNFIDNTDLQIYVG 75

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 30/229 (13%), Positives = 60/229 (26%), Gaps = 42/229 (18%)

Query: 30  MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89
             VT      I +        TY +     TG++                    V     
Sbjct: 34  FSVTLRDAGQIALIDG----STYEIKTVLDTGYA--------------------VHISRL 69

Query: 90  SIDNRQIVSASRDRTIKLWNTL---GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
           S   R +    RD  + + +           I+ G       +         +  I  A 
Sbjct: 70  SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED-KYAIAGAY 128

Query: 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA------------SGGKDGVIL 194
           W     + +    + +   +      +     P+  + A            +  + G IL
Sbjct: 129 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 188

Query: 195 LWDLAEGKRL--YSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK 241
           L D  +   L    + A   +H      +  +   A     K+  +++K
Sbjct: 189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 131 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 190
                +      V+      + + + S  +++  L      V+   +S  G      G+D
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRD 82

Query: 191 GVILLWDLAEGKR--LYSLDAGA----VIHALCFSPNRYWLCAATEQS--IKIWDLESKS 242
           G + + DL   +   +  +  G+    +  +        +  A         I D E+  
Sbjct: 83  GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142

Query: 243 IVEDLKVDLKT 253
             +       T
Sbjct: 143 PKKIQSTRGMT 153

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 39/272 (14%), Positives = 69/272 (25%), Gaps = 51/272 (18%)

Query: 13  AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLS 72
                V AI       + IV       I++   T         +        F+ D  L 
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYT----DLNNLKTTEISAERFLHDGGLD 215

Query: 73  SDGQ--FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT----------LGECKYTIQE 120
              +            V       ++V A  D   +  +            G    T   
Sbjct: 216 GSHRYFITAANARNKLVVIDTKEGKLV-AIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274

Query: 121 GDA--------------HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA 166
           GD               +   +     +      ++   +        N     + ATL 
Sbjct: 275 GDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHP------NSQYLYVDATLN 326

Query: 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP--NRYW 224
                  +VAV  D       G D       +AE   +       V     F+      W
Sbjct: 327 PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV--QGEFNKDGTEVW 383

Query: 225 L---CAATEQS-IKIWD---LESKSIVEDLKV 249
                   ++S + + D   LE K +++D ++
Sbjct: 384 FSVWNGKDQESALVVVDDKTLELKHVIKDERL 415

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.8 bits (143), Expect = 8e-11
 Identities = 14/159 (8%), Positives = 43/159 (27%), Gaps = 10/159 (6%)

Query: 26  DNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG--QFVGHTKD 83
             +  +V  +    I    L+  +         +   +   +       G  Q   H   
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAK---FLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 84  VLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTI 142
                      +    +  R + + +   GE     + G      +  +  S +      
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH----EIDSINVSQDEKPLLY 316

Query: 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 181
             ++ D+T+ + +  + +   ++         +  +  G
Sbjct: 317 ALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 20/196 (10%), Positives = 50/196 (25%), Gaps = 27/196 (13%)

Query: 56  RRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECK 115
                         +  ++         +   A+S    ++V  +    I   +      
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 228

Query: 116 YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV 175
             +   +A TE      + P       V+                               
Sbjct: 229 KFLPAVEALTEAERADGWRPG--GWQQVAYHRALDRIYL--------------------- 265

Query: 176 AVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPN---RYWLCAATEQS 232
            +               +++ D   G+RL   + G  I ++  S +     +  +  +++
Sbjct: 266 -LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKT 324

Query: 233 IKIWDLESKSIVEDLK 248
           + I D ES   +  + 
Sbjct: 325 LYIHDAESGEELRSVN 340

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 12/113 (10%), Positives = 26/113 (23%), Gaps = 20/113 (17%)

Query: 142 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL----------CASGGKDG 191
               +      V +    ++   +    G++    V+ DGS            A G +  
Sbjct: 21  PAHFAAVTQQFVIDGEAGRVIGMI--DGGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 192 VILLWDLAEGKRL--------YSLDAGAVIHALCFSPNRYWLCAATEQSIKIW 236
            + ++D                    G        +P+   L           
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 131

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 124 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTV-AVSPDGS 182
                S    + +     I SAS D+T+K+WN++  K+  T+   T   +    +     
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294

Query: 183 LCASGGKDGVILLWDL 198
              S   +G I   + 
Sbjct: 295 ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.3 bits (131), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 92  DNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT 150
           D  +I SAS D+TIK+WN    + + TI  G    +    + ++   L    VS S +  
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL----VSISANGF 304

Query: 151 VKVWNL 156
           +   N 
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASG 187
              +  +P      I   +   +V    + +         H+        SP G  CASG
Sbjct: 20  AVVLGNTPAG--DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 188 GKDGVILLW 196
              G + +W
Sbjct: 77  DVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 35/260 (13%), Positives = 68/260 (26%), Gaps = 31/260 (11%)

Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
               H+   T   T   +     +     ++ +W  T+            +G    +   
Sbjct: 53  IYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

Query: 70  VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWV- 128
             S     VG  ++     F  D          +   + +   +     +      +   
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

Query: 129 -------------------SCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT----- 164
                                     N       S   D T+ ++N  +           
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 165 --LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHALCFSP 220
                H+G V  +  SPDG+  AS   D  I +W++A  K   ++  G       L    
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 221 NRYWLCAATE-QSIKIWDLE 239
            +  L + +    I   + E
Sbjct: 292 TKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 10/223 (4%)

Query: 76  QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
            +  H+        S       S      +++W+T              +  V  + +  
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILL 195
            + +   V    +R   V+          L G    +N+V   P                
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI---------- 162

Query: 196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEA 255
              ++   +   +         F  +  ++ +            +      +  +     
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222

Query: 256 EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
           +       +      +     L WS DG+ + S   D  I++W
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 49/306 (16%), Positives = 90/306 (29%), Gaps = 59/306 (19%)

Query: 27  NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVG------- 79
             D I   +   S+    +     T        T HSH       S  G +         
Sbjct: 28  AGDKIQYCN-GTSVYTVPVGSLTDT-----EIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 80  ------------------HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG 121
                                  +         + ++A  +   +  +       T    
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141

Query: 122 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG 181
                          +    I+S S D TV ++     K ++T   HT +V++V  +PDG
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201

Query: 182 SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSP---------NRYWLCAATEQS 232
           SL AS G DG I+L++  +G +    +  ++ +                     A+ +++
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261

Query: 233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD 292
           IKIW++ +  + + + V                      I    L        L S   +
Sbjct: 262 IKIWNVATLKVEKTIPVG-------------------TRIEDQQLGIIWTKQALVSISAN 302

Query: 293 GVIRVW 298
           G I   
Sbjct: 303 GFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 7/62 (11%), Positives = 13/62 (20%), Gaps = 2/62 (3%)

Query: 170 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAA 228
           G    +  +P G          V     +                     SP+ Y+  + 
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 229 TE 230
             
Sbjct: 77  DV 78

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 108 WNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKLRATLA 166
             T      T +      +            +  + + S D  + ++++    K+   L 
Sbjct: 196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN 255

Query: 167 GHTGYVNTVAVSPDGSLCASGGKDGVILLWD 197
            H   VN +      +L  S G D  I  W+
Sbjct: 256 AHKDGVNNLLWETPSTL-VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (117), Expect = 1e-07
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 123 AHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS 182
            H + ++ +  +P      ++S S+D  +  W+ S+         H+  + ++  S    
Sbjct: 11  GHNKGITALTVNP------LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQE 59

Query: 183 LC 184
             
Sbjct: 60  YS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 77  FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN 136
             GH K + ++  +     ++S S D  I  W++      ++ +   H+  +  +  S  
Sbjct: 9   ISGHNKGITALTVN----PLISGSYDGRIMEWSS-----SSMHQD--HSNLIVSLDNSKA 57

Query: 137 TLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVA 176
               +I      +   +            + +      V 
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 158 NCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC 217
           + ++  T++GH   +  + V+P      SG  DG I+ W  +   + +S     +I +L 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS----NLIVSLD 53

Query: 218 FSPNRYWLCAATEQSIKIW 236
            S  + +   + + ++K+ 
Sbjct: 54  NSKAQEYSSISWDDTLKVN 72

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 18/248 (7%), Positives = 57/248 (22%), Gaps = 17/248 (6%)

Query: 7   LKGTMRAHTDMVTAIATPIDN------SDMIVTASRDKSIIVWHLTKEEKTYGVARRRLT 60
                + H++++ ++             D  +  +           K           + 
Sbjct: 38  SSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97

Query: 61  GHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE 120
            +   +  +   +         +    A S+    +     +        L + + +   
Sbjct: 98  TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157

Query: 121 GDAHTEWVSCVRFSPNTLQPTIVSASWD---------RTVKVWNLSNCKLRATLAGHTGY 171
                   S +  SP+                                     ++     
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217

Query: 172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG--AVIHALCFSPNRYWLCAAT 229
                   +  L A+G  D  I ++ +    ++          ++ L +      + +  
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA 277

Query: 230 EQSIKIWD 237
           +  IK W+
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 9e-06
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 23/101 (22%)

Query: 11  MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVV 70
             +               D++ T S D +I ++ + +  K                    
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA---------------- 253

Query: 71  LSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTL 111
                    H   V ++ +   +  +VS+  D  IK WN +
Sbjct: 254 ------LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 39/314 (12%), Positives = 82/314 (26%), Gaps = 58/314 (18%)

Query: 10  TMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDV 69
           T+  H   +TA+       + +++ S D  I+ W  +   +           HS+ +  +
Sbjct: 8   TISGHNKGITALTV-----NPLISGSYDGRIMEWSSSSMHQ----------DHSNLIVSL 52

Query: 70  VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNT----------LGECKYTIQ 119
             S   ++   + D       I   +  S  +  +                L    +T  
Sbjct: 53  DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112

Query: 120 EGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSP 179
              +          S +     +     +                        + +++SP
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172

Query: 180 DGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH-------------ALCFSPNRYWLC 226
             +  A+G   G ILL+DL   +   S  A                              
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232

Query: 227 AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL 286
            + + +I I+ ++    +                      +        +L W     TL
Sbjct: 233 GSLDTNIFIYSVKRPMKI-------------------IKALNAHKDGVNNLLWETPS-TL 272

Query: 287 FSGYTDGVIRVWGI 300
            S   D  I+ W +
Sbjct: 273 VSSGADACIKRWNV 286

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 1e-09
 Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 3/126 (2%)

Query: 76  QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 135
                   V  V FS D+ + V                 ++     D        +    
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 259

Query: 136 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVS---PDGSLCASGGKDGV 192
                   +   D T++VW+++  K           +    V           S   DG 
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 193 ILLWDL 198
           +  ++L
Sbjct: 320 LNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 4e-09
 Identities = 20/167 (11%), Positives = 44/167 (26%), Gaps = 16/167 (9%)

Query: 84  VLSVAFSIDNRQIVSASRD----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139
              +++      I          R +   ++              +  V+ V+FSP    
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH--GSSVVTTVKFSPIKGS 77

Query: 140 PTIVSASWDRTVKVWNLSNCKLRATL--------AGHTGYVNTVAVSPDGSLCA--SGGK 189
             + S      V VW  +  K   ++            G ++ ++   +G        G+
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 190 DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIW 236
           D   +      G  L  +   +     C       + + T       
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 5e-09
 Identities = 30/264 (11%), Positives = 73/264 (27%), Gaps = 39/264 (14%)

Query: 14  HTDMVTAIA-TPIDNSDMIVTASRDKSIIVWHLTKEEKTY---GVARRRLTGHSHFVQDV 69
            + +VT +  +PI  S  + +      +IVW  T ++++       +      +  + D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 70  VLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDA------ 123
               +G+ +    +         +    ++  + +              +   +      
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 124 ----------------------HTEWVSCVRFSPN--TLQPTIVSASWDRTVKVWNLSNC 159
                                    +V  V FSP+      T+ S          +    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 160 KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-----DAGAVIH 214
           K                   D    A+ G D  I +WD+   K +          G    
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 215 ALCFSPNRYWLCAATEQSIKIWDL 238
            +  + N   +  + + ++  ++L
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYEL 325

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 18/258 (6%), Positives = 49/258 (18%), Gaps = 32/258 (12%)

Query: 8   KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQ 67
                +    V  I     ++ ++       +              V        +    
Sbjct: 116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS---------VPGASDDQLTKSAS 166

Query: 68  DVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEW 127
              +                  S       S              +     Q   +    
Sbjct: 167 CFHIHPGA-------AATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAAQ 218

Query: 128 VSCVRFSPNTLQPTIVSASWD-RTVKVWNLSNCKLRATLA--GHTGYVNTVAVSPDGSLC 184
            +        +  +I+          +    +       A    +     VA   +    
Sbjct: 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278

Query: 185 ASGGKDGV---------ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT---EQS 232
                +                 + G+    +  G    A+  + +      A     + 
Sbjct: 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV 338

Query: 233 IKIWDLESKSIVEDLKVD 250
           + I+D  S      +++D
Sbjct: 339 LDIYDAASDQDQSSVELD 356

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 13/180 (7%), Positives = 33/180 (18%), Gaps = 28/180 (15%)

Query: 30  MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89
           + + A    +   W                     F+   V    G              
Sbjct: 36  ITLPAYFAGTTENWVSCAGC-----GVTLGHSLGAFLSLAVAGHSGSDFA--------LA 82

Query: 90  SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPT------IV 143
           S    +     R   +++++ +        + +        V    + +         + 
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPI--ADIELPDAPRFSVGPRVHIIGNCASSACLLF 140

Query: 144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNT-------VAVSPDGSLCASGGKDGVILLW 196
                      ++            + +             S   SL AS          
Sbjct: 141 FLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 15/213 (7%), Positives = 52/213 (24%), Gaps = 42/213 (19%)

Query: 9   GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVW-HLTKEEKTYGVARRRLTGHSHFVQ 67
            +    T   +        +      S   S+              V  +     +   Q
Sbjct: 156 ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ 215

Query: 68  DVVLSSDGQFV------------------------GHTKDVLSVAFSIDNRQIVSASRDR 103
               +  G  V                        G+     +  F     Q+V+  ++ 
Sbjct: 216 AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275

Query: 104 TIKLWNTLGECKY------TIQEGDAHT----------EWVSCVRFSPNTLQPTIVSASW 147
              +  T+   +             A                 +  + +       +++ 
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG 335

Query: 148 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD 180
              + +++ ++ + ++++    G   +++V  +
Sbjct: 336 TEVLDIYDAASDQDQSSVELDKG-PESLSVQNE 367

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 11/127 (8%), Positives = 30/127 (23%), Gaps = 20/127 (15%)

Query: 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG----------SLCASGGKDGV 192
           + A +  T + W                +++       G          +  A G +   
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDY 97

Query: 193 ILLWDLAEGKRLYSLDAGAVI--------HALCFSPNRYWL--CAATEQSIKIWDLESKS 242
           + ++D      +  ++             H +    +   L        +     +   S
Sbjct: 98  VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157

Query: 243 IVEDLKV 249
             +  K 
Sbjct: 158 DDQLTKS 164

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEG 201
           ++ S    + V ++++ K+ AT+           +SPDG+ +  +      + + D A  
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 202 KRLYSLDAGAVIHALCFSPNRYWLC 226
             + ++ AG+    +  SP+   + 
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVY 89

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 2/110 (1%)

Query: 108 WNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG 167
                     I                  T         +  TV + +    K+ A +  
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242

Query: 168 HTGYVNTVAVSPDGS-LCASGGKDGVILLWDLAEGKRLYSLDAGAVIHAL 216
                  +AV+PDG  +  +      + + D A      ++  G   +A 
Sbjct: 243 G-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYAS 291

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 186 SGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQS--IKIWDLES 240
           +  +   I + D+   K   ++  G+       SP+   +  A   S  + I D  +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 9e-07
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 133 FSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV 192
              +      V+      + + +  + K+   +      V+   +S  G      G+D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84

Query: 193 ILLWDLAEGK 202
           I + DL   +
Sbjct: 85  IDMIDLWAKE 94

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 12/112 (10%)

Query: 91  IDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR 149
           + N   V+      I L +    +    I  G A    V   R S +     ++    D 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA----VHISRMSAS--GRYLLVIGRDA 83

Query: 150 TVKVWNLSNCKLRATL-----AGHTGYVNTVAVSPDGSLCASGGKDGVILLW 196
            + + +L   +                 ++     +     +G         
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 38/287 (13%), Positives = 75/287 (26%), Gaps = 47/287 (16%)

Query: 30  MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89
             VT      I +        +  + +   TG++                    V     
Sbjct: 34  FSVTLRDAGQIALVDG----DSKKIVKVIDTGYA--------------------VHISRM 69

Query: 90  SIDNRQIVSASRDRTIKLWNTL---GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS 146
           S   R ++   RD  I + +           I+ G       S         + TI  A 
Sbjct: 70  SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED-RYTIAGAY 128

Query: 147 WDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS------------LCASGGKDGVIL 194
           W     + +    + +  ++     V+T    P+                 +  + G +L
Sbjct: 129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188

Query: 195 LWDLAEGKRLY--SLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDL 251
           L +  +   L   S+ A   +    +  + RY++ AA   +            +     L
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK----DRRLSAL 244

Query: 252 KTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 298
               +          +  K     S +   DGS    G        +
Sbjct: 245 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 291

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 143 VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 202
           +  SW   VK  +      +         + +V +   G           I L D    K
Sbjct: 7   MRESWKVLVKPEDRPK---KQLNDLDLPNLFSVTLRDAGQ----------IALVDGDSKK 53

Query: 203 RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAE 256
            +  +D G  +H    S + RY L    +  I + DL +K   +  ++ +  EA 
Sbjct: 54  IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 108

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 16/142 (11%), Positives = 35/142 (24%), Gaps = 24/142 (16%)

Query: 80  HTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQ 139
               V S +   D    +  +  +    +    +    +            ++  P +  
Sbjct: 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYA--WKKVAEL---QGQGGGSLFIKTHPKSSH 317

Query: 140 -----PTIVSASWDRTVKVWNLSN---------CKLRATLAGHTGYVNTVAVSPDG---- 181
                     A   ++V V++L N             A L      V     +  G    
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377

Query: 182 -SLCASGGKDGVILLWDLAEGK 202
            S+         +++ D    K
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLK 399

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 139 QPTIVSASWDRTVKVWNL--SNCKLRATLAGHTGYVNTVAVSPDGS-LCASGGKDGVILL 195
           Q   +++   + + VWNL          +    G V  + VSPD   L      +  +L 
Sbjct: 4   QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 196 WDLAEGKRLYSL----DAGAVIHALCFSPNRYWLC 226
           + +A      +          +  +       ++ 
Sbjct: 64  YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVF 98

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 97  VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPN--TLQPTIVSASWDRTVKVW 154
           +++   + I +WN   E   T+ +       V  +  SP+   L    V    +  V  +
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYL---YVGVRPEFRVLAY 64

Query: 155 NLSNCKLRATLAGHT---GYVNTVAVSPDGSLC 184
            ++      T A  +   G +  ++    G   
Sbjct: 65  RIAPDDGALTFAAESALPGSLTHISTDHQGQFV 97

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 21/108 (19%)

Query: 30  MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAF 89
           + + +   + I VW+L        +   ++      VQ +V+S D +++           
Sbjct: 6   VYIASPESQQIHVWNL---NHEGALTLTQVVDVPGQVQPMVVSPDKRYL----------- 51

Query: 90  SIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPN 136
                  V    +  +  +     +   T     A    ++ +     
Sbjct: 52  ------YVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.52
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.34
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.17
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.04
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.91
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.85
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.84
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.75
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.63
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.59
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.42
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.22
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.26
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.02
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.45
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.26
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.21
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.01
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.61
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.38
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.31
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.83
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.33
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	85.44
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	83.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.76

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-38  Score=265.09  Aligned_cols=268  Identities=17%  Similarity=0.280  Sum_probs=219.3

Q ss_pred             ceeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce------
Q 048118            4 GLVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF------   77 (303)
Q Consensus         4 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------   77 (303)
                      +...+.++ .|...|++++|+|++ .+|+||+ ||.|+|||+...............+|...|.++.++|++++      
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~  117 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             CceEEEEC-CCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence            33445455 699999999999875 6899987 89999999976544333334445678888999999988642      


Q ss_pred             --------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCC
Q 048118           78 --------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNT  137 (303)
Q Consensus        78 --------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  137 (303)
                                          .+|...+..++|+|++.++++++.|+.|++|+........  ....|...+.+++|++++
T Consensus       118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~--~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR--QFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence                                3677889999999999999999999999999986543322  224577889999999975


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEE
Q 048118          138 LQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC  217 (303)
Q Consensus       138 ~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  217 (303)
                        ..+++++.|+.+++||+++++....+. |...|.+++|+|++++|++++.|+.+++||+++++..........|.+++
T Consensus       196 --~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~  272 (337)
T d1gxra_         196 --TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK  272 (337)
T ss_dssp             --SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEE
T ss_pred             --cccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccccccccceEE
Confidence              578999999999999999988776654 67899999999999999999999999999999988877767778999999


Q ss_pred             EcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEE
Q 048118          218 FSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIR  296 (303)
Q Consensus       218 ~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~  296 (303)
                      |+|++.+++ ++.|+.|++||+++++.+....                     +...+.+++|+|++++|++|+.||+|+
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~  331 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------------------ESSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---------------------CCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            999986554 5678999999999887664332                     223467899999999999999999999


Q ss_pred             EEec
Q 048118          297 VWGI  300 (303)
Q Consensus       297 ~w~~  300 (303)
                      +|||
T Consensus       332 vWdl  335 (337)
T d1gxra_         332 VYEV  335 (337)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-37  Score=255.09  Aligned_cols=262  Identities=29%  Similarity=0.519  Sum_probs=221.1

Q ss_pred             cccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce----------
Q 048118            8 KGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF----------   77 (303)
Q Consensus         8 ~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------   77 (303)
                      +..|+||.+.|++++|+|++ ++||||+.|++|++||+.+..     ....+.+|...|.++.+++++.+          
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             cEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCC-----EEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            45789999999999999875 699999999999999987543     34566788899999999887642          


Q ss_pred             --------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEE
Q 048118           78 --------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIV  143 (303)
Q Consensus        78 --------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  143 (303)
                                    .+|...+.++.+++++..+++++.|+.+++|+.......  .....|...+.+++|+|++  ..++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~l~  159 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV--KTFTGHREWVRMVRPNQDG--TLIA  159 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECTTS--SEEE
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceee--eEEccCCCcceeeecccCC--CEEE
Confidence                          367889999999999999999999999999998654322  2223567789999999975  5799


Q ss_pred             EEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCC--------------------CEEEEEeCCCeEEEEeCCCCce
Q 048118          144 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG--------------------SLCASGGKDGVILLWDLAEGKR  203 (303)
Q Consensus       144 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~d~~v~iwd~~~~~~  203 (303)
                      +++.|+.|++|+..+++....+.+|...+..+.++|++                    ..+++++.|+.|++||+++++.
T Consensus       160 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             EEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence            99999999999999999999999999999999988753                    4689999999999999999998


Q ss_pred             EEEec-CCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcC
Q 048118          204 LYSLD-AGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSV  281 (303)
Q Consensus       204 ~~~~~-~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  281 (303)
                      +.++. ....+.+++|+|++.+|+ ++.||.|++||+++++.+..+.                    .|...+++++|+|
T Consensus       240 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~h~~~V~~~~~s~  299 (317)
T d1vyhc1         240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------------------AHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------------------CCSSCEEEEEECS
T ss_pred             EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--------------------CCCCCEEEEEEcC
Confidence            88875 467899999999986554 5679999999999887665443                    3445678899999


Q ss_pred             CCCEEEEeecCCeEEEEe
Q 048118          282 DGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       282 ~~~~l~~gs~Dg~v~~w~  299 (303)
                      ++++|++|+.||+|++||
T Consensus       300 ~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEeC
Confidence            999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.7e-38  Score=260.78  Aligned_cols=249  Identities=22%  Similarity=0.362  Sum_probs=199.9

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      +...++|+||.+.|++++|+|++ .+||||+.||+|++||+......     .                  .+.+|...|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~-----~------------------~~~~~~~~v  100 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKV-----H------------------AIPLRSSWV  100 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE-----E------------------EEECSCSCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccceeE-----E------------------EEecccccE
Confidence            45667899999999999999865 69999999999999998653211     1                  245688899


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEecCCcee-----eeee--------------------------------------cC
Q 048118           85 LSVAFSIDNRQIVSASRDRTIKLWNTLGECK-----YTIQ--------------------------------------EG  121 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~-----~~~~--------------------------------------~~  121 (303)
                      .+++|+|++.++++++.|+.+++|+......     ....                                      ..
T Consensus       101 ~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (340)
T d1tbga_         101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             EeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998532110     0000                                      00


Q ss_pred             CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 048118          122 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG  201 (303)
Q Consensus       122 ~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~  201 (303)
                      ..+...+....+.+..  ..+++++.|+.|++||++++++...+.+|...|++++|+|++++|++|+.|+.|++||++..
T Consensus       181 ~~~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         181 TGHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cccceeEeeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            0122234455555543  57899999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEec---CCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEE
Q 048118          202 KRLYSLD---AGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL  277 (303)
Q Consensus       202 ~~~~~~~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (303)
                      +.+..+.   ....+.+++|+|++.++++ +.||.|++||+++++.+..+                    .+|...++++
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------------------~~H~~~V~~l  318 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------------------AGHDNRVSCL  318 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSSCEEEE
T ss_pred             ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE--------------------cCCCCCEEEE
Confidence            8776653   3467999999999876654 56899999999988776543                    3345567889


Q ss_pred             EEcCCCCEEEEeecCCeEEEEe
Q 048118          278 NWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       278 ~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                      +|+|++.+|++|+.||.|++||
T Consensus       319 ~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-37  Score=253.62  Aligned_cols=253  Identities=20%  Similarity=0.330  Sum_probs=201.8

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      ......+.+|.+.|++++|+|+ +++||+|+.|++|++|++.......   ..                  .+.+|.++|
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~---~~------------------~~~~~~~~v  105 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHIL---KT------------------TIPVFSGPV  105 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCE---EE------------------EEECSSSCE
T ss_pred             CceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeecccccc---cc------------------ccccccCcc
Confidence            3455567899999999999997 4799999999999999987543211   00                  245688999


Q ss_pred             EEEEEeeCCCEEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeE
Q 048118           85 LSVAFSIDNRQIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLR  162 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~  162 (303)
                      .+++|+|++.++++++.  +..+++|+......  ......|...|.+++|+|++ ...+++|+.|+.|++||+++++..
T Consensus       106 ~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~--~~~l~~h~~~v~~v~~~~~~-~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         106 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--NGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             EEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--CBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTTBEEE
T ss_pred             ccccccccccccccccccccccccccccccccc--cccccccccccccccccccc-eeeecccccccccccccccccccc
Confidence            99999999999999986  45699999754322  22335678889999999986 346889999999999999999999


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC--------CCeEEEEEEcCCCeEEEE-EcCCcE
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--------GAVIHALCFSPNRYWLCA-ATEQSI  233 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~-~~~~~i  233 (303)
                      ..+..|..+|+++.++|++++|++++.|+.|++||+++++.+..+..        ...|.+++|+|++.+|++ +.|+.|
T Consensus       183 ~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999887776532        357999999999876655 468999


Q ss_pred             EEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          234 KIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ++||+++++++..+.....                 ....+.++.|+  +.+|++++.||.|++||..
T Consensus       263 ~iwd~~t~~~~~~l~~~~~-----------------~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         263 KIWNVATLKVEKTIPVGTR-----------------IEDQQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTTTEEEEEEECCSS-----------------GGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             EEEECCCCcEEEEEECCCC-----------------ccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence            9999999988776643211                 01122345554  5679999999999999963

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-35  Score=244.94  Aligned_cols=251  Identities=14%  Similarity=0.227  Sum_probs=197.4

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      ..+++.+..++++|++ +.|+.++ ++.+.+|++......                       ..+.+|.+.|.+++|+|
T Consensus        14 ~~~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~~~-----------------------~~~~~H~~~v~~~~~sp   68 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDT-----------------------EIYTEHSHQTTVAKTSP   68 (311)
T ss_dssp             CCCTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCC-----------------------EEECCCSSCEEEEEECT
T ss_pred             CCCCCCeEEEEEcCCC-CEEEEEe-CCEEEEEECCCCcee-----------------------EEEcCCCCCEEEEEEeC
Confidence            3344556678889876 4677664 567999998654321                       13567999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC--CCcEEEEECCCceeEEEEcCCC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW--DRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      +|++|++|+.|+.|++|++.............|...|.+++|+|++  ..+++++.  +..+++|++++++....+.+|.
T Consensus        69 ~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~--~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~  146 (311)
T d1nr0a1          69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES--KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA  146 (311)
T ss_dssp             TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS--CEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred             CCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            9999999999999999998654322222224577889999999986  46676664  5679999999988888899999


Q ss_pred             CCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeee
Q 048118          170 GYVNTVAVSPDGSL-CASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVED  246 (303)
Q Consensus       170 ~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~  246 (303)
                      ..|++++|+|++++ |++|+.|+.|++||+++++.+..+.. ...|.+++|+|++.+++ ++.|+.|++||++++..+..
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence            99999999999885 78899999999999999888777754 67899999999987665 45689999999998876655


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +....             ....+|...+++++|+|++++|++|+.||.|++||+..
T Consensus       227 ~~~~~-------------~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         227 FEDDS-------------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             CBCTT-------------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccc-------------cccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            43211             11234555678999999999999999999999999753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-34  Score=238.06  Aligned_cols=263  Identities=18%  Similarity=0.325  Sum_probs=195.7

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeee-cCCCcceEEEEeCCCCcee------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRL-TGHSHFVQDVVLSSDGQFV------   78 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~------   78 (303)
                      .+...++||.++|++++|+|++ ++|+||+.|++|++||+.....     ...+ .+|...|.++.++|++++.      
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~   76 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGIS-----NRVFPDVHATMITGIKTTSKGDLFTVSWDD   76 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE-----EECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred             ccceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE-----EEEEcCCCCCcEEEEEeeccceeeccccee
Confidence            3567899999999999999975 6999999999999999875432     2222 3577788888888776431      


Q ss_pred             --------------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCC
Q 048118           79 --------------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTL  138 (303)
Q Consensus        79 --------------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  138 (303)
                                          .|...+.+++|++++.++++++ ++.+++|+......  ..    ....+.+++|+|++ 
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~--~~----~~~~~~~~~~s~~~-  148 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE--VP----ISYNSSCVALSNDK-  148 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE--EE----CSSCEEEEEECTTS-
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccccc--cc----cccccccccccccc-
Confidence                                4556788889999888776554 46788888532211  11    22346789999985 


Q ss_pred             CCEEEEEeCCCcEEEEECCCceeEE-EEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec----CCCeE
Q 048118          139 QPTIVSASWDRTVKVWNLSNCKLRA-TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD----AGAVI  213 (303)
Q Consensus       139 ~~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v  213 (303)
                       ..+++++.|+.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++..+....    +...|
T Consensus       149 -~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         149 -QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             -CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             578999999999999998776543 345688999999999999999999999999999998876654332    35689


Q ss_pred             EEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecC
Q 048118          214 HALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTD  292 (303)
Q Consensus       214 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~D  292 (303)
                      .+++|+|++.++++ +.|+.|++||++++.........                 ..+...+..+.| +++.+|++|+.|
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-----------------AHAMSSVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-----------------SSTTSCEEEEEE-EETTEEEEEETT
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEec-----------------CCCCCcEEEEEE-CCCCEEEEEeCC
Confidence            99999999876665 56899999999876533221110                 011122344544 567899999999


Q ss_pred             CeEEEEecc
Q 048118          293 GVIRVWGIG  301 (303)
Q Consensus       293 g~v~~w~~~  301 (303)
                      |+|++||+.
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            999999983

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-34  Score=243.78  Aligned_cols=282  Identities=15%  Similarity=0.177  Sum_probs=209.7

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce----------------
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF----------------   77 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------   77 (303)
                      +.++|++++|+|++ .+||+|+.|+.|++|+.....   ......+.+|...|.++.++|++.+                
T Consensus         6 ~~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~---~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTE---EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCC---EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            34789999999975 689999999999999986532   1245667889999999999988643                


Q ss_pred             ----------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCce--eeeeecCCCCccceEEEEEcCCCCCCEEEEE
Q 048118           78 ----------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA  145 (303)
Q Consensus        78 ----------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  145 (303)
                                .+|...|.+++|+|++..|++++.|+.+++|+.....  .........|...|.+++|+|++  ..+++|
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~l~s~  159 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS--VLLAAG  159 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--SEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccc--cceecc
Confidence                      2678889999999999999999999999999864322  12223345677889999999986  579999


Q ss_pred             eCCCcEEEEECCCc------------------eeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118          146 SWDRTVKVWNLSNC------------------KLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       146 ~~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  207 (303)
                      +.|+.|++||....                  +.......|...|.+++|+|++++|++++.|++|++||+.+++.+..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence            99999999997532                  244556778899999999999999999999999999999999888877


Q ss_pred             cC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCC--Cceeeeeeeccccccc------------------cc-cCcccee
Q 048118          208 DA-GAVIHALCFSPNRYWLCAATEQSIKIWDLES--KSIVEDLKVDLKTEAE------------------KS-EATTATT  265 (303)
Q Consensus       208 ~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~~~------------------~~-~~~~~~~  265 (303)
                      .. ..+|.+++|+|++.+++++.|+.+.+|+...  +...............                  .. .......
T Consensus       240 ~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
T d1k8kc_         240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  319 (371)
T ss_dssp             ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             ecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccce
Confidence            54 5689999999999999999998877766543  2221111100000000                  00 0000000


Q ss_pred             eccccceeEEEEEEcCCC----CEEEEeecCCeEEEEecc
Q 048118          266 TIKKKNIYCTSLNWSVDG----STLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       266 ~~~~~~~~~~~~~~sp~~----~~l~~gs~Dg~v~~w~~~  301 (303)
                      ....|...++++++.|.+    ..|+|++.||.|++||+.
T Consensus       320 ~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            112355567888887754    358999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=240.63  Aligned_cols=271  Identities=21%  Similarity=0.327  Sum_probs=190.5

Q ss_pred             cccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEee
Q 048118           12 RAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSI   91 (303)
Q Consensus        12 ~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~   91 (303)
                      .+|.+.|++++|+|++ ++||+|+ |++|++|++.+...     ...+..+................+|...|.+++|+|
T Consensus        59 ~~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  131 (388)
T d1erja_          59 LDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSL-----VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  131 (388)
T ss_dssp             EECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCE-----EEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccce-----EeeecccccccccccccccccccCCCCCEEEEEECC
Confidence            3699999999999875 6899886 89999999875432     122222221111111111123456888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCC
Q 048118           92 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGY  171 (303)
Q Consensus        92 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  171 (303)
                      ++.+|++|+.|+.|++|+.......  .....|...|.++.+++++  ..+++++.++.+++||..+.........+...
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~--~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  207 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV  207 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred             CCCcceecccccccccccccccccc--ccccccccccccccccccc--ccccccccceeeeeeecccccccccccccccc
Confidence            9999999999999999998654332  2234678889999999875  57899999999999999988877766655544


Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec--------CCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCc
Q 048118          172 VNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD--------AGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKS  242 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~  242 (303)
                      +....+.+++++|++++.|+.|++||++++..+..+.        ....|.+++|+|++.+++ ++.|+.|++||++++.
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            4444444488999999999999999999988776653        245799999999986665 5568999999998766


Q ss_pred             eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          243 IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .........        ..........+...+.+++|+|++++|++|+.||.|++||+.
T Consensus       288 ~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         288 NKSDSKTPN--------SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             -------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             ccccccccc--------ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            543322110        011122233455667899999999999999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=223.38  Aligned_cols=256  Identities=16%  Similarity=0.263  Sum_probs=189.4

Q ss_pred             cccccc-cceeeeecCCC-CCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEE
Q 048118           10 TMRAHT-DMVTAIATPID-NSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSV   87 (303)
Q Consensus        10 ~~~~h~-~~v~~v~~~~~-~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i   87 (303)
                      .+.+|. ..|++++|+|. ++.+|+||+.||+|++||+............               ....+..|.++|.++
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~v  121 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN---------------VKSEFQVLAGPISDI  121 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE---------------EEEEEECCSSCEEEE
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc---------------cccccccccCcEEEE
Confidence            466774 67999999984 4579999999999999998654322111100               011345688999999


Q ss_pred             EEeeCCCEEEEEeC--CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE
Q 048118           88 AFSIDNRQIVSASR--DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL  165 (303)
Q Consensus        88 ~~~~~~~~l~t~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~  165 (303)
                      +|+++++++++++.  ++.+++|+.....  .+.....|...|.+++|+|+. ...+++++.|+.+++||....+....+
T Consensus       122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~  198 (325)
T d1pgua1         122 SWDFEGRRLCVVGEGRDNFGVFISWDSGN--SLGEVSGHSQRINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASD  198 (325)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCC--EEEECCSCSSCEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEE
T ss_pred             EECCCCCccceeeccccceEEEEeecccc--cceeeeecccccccccccccc-cceEEEeecccccccccccccccceec
Confidence            99999999887764  6778999875432  223335688889999999975 346788999999999999887766555


Q ss_pred             c---CCCCCeeEEEECCC-CCEEEEEeCCCeEEEEeCCCCceEEEecC-----CCeEEEEEEcCCCeEEEEEcCCcEEEE
Q 048118          166 A---GHTGYVNTVAVSPD-GSLCASGGKDGVILLWDLAEGKRLYSLDA-----GAVIHALCFSPNRYWLCAATEQSIKIW  236 (303)
Q Consensus       166 ~---~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~i~iw  236 (303)
                      .   .|...|++++|+|+ +.+|++++.|+.|++||+++++.+..+..     ...+.+++|.+...+++++.|+.|++|
T Consensus       199 ~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw  278 (325)
T d1pgua1         199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW  278 (325)
T ss_dssp             CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             ccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence            3   45678999999996 57899999999999999999998887752     234566666544567777889999999


Q ss_pred             eCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          237 DLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      |+++++.+..+......                ......++.|.+ +.+|++||.||.|++||+
T Consensus       279 d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         279 DVTTSKCVQKWTLDKQQ----------------LGNQQVGVVATG-NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ETTTTEEEEEEECCTTC----------------GGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred             ECCCCCEEEEEEecCCc----------------ccCeEEEEEECC-CCEEEEEECCCEEEEEEC
Confidence            99999887766542111                011123344544 358899999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=226.40  Aligned_cols=260  Identities=25%  Similarity=0.329  Sum_probs=194.7

Q ss_pred             ccccccccce-eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee---------
Q 048118            9 GTMRAHTDMV-TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV---------   78 (303)
Q Consensus         9 ~~~~~h~~~v-~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------   78 (303)
                      .+|+||.+.| +|++++   +++||||+.|++|++||+...     .+...+.+|...|.++.+++++.+.         
T Consensus         6 ~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~-----~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~   77 (355)
T d1nexb2           6 TTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR   77 (355)
T ss_dssp             EEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTT-----EEEEEEECCSSCEEEEEEETTTEEEEEETTCCEE
T ss_pred             EEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCC-----cEEEEEECCCCCEEEEEEcCCCEEEEEecccccc
Confidence            4688998875 677764   469999999999999998653     3456678899999999998765321         


Q ss_pred             ----------------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceee--------------------------
Q 048118           79 ----------------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKY--------------------------  116 (303)
Q Consensus        79 ----------------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~--------------------------  116 (303)
                                      .+........+.+++.++++++.|+.|++|+.......                          
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence                            11122345566778888999999999999985321000                          


Q ss_pred             -----------------------------------eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118          117 -----------------------------------TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus       117 -----------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                                                         .......+...+.++.++|++  ..+++++.|+.|++||+.++..
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTCCE
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc--eeeecccccceEEeeecccccc
Confidence                                               000011233345667777765  5789999999999999999999


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESK  241 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~  241 (303)
                      ...+.+|...|.++++++  ++|++++.||+|++||++++...............++++++.+++++.|+.|++||++++
T Consensus       236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg  313 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG  313 (355)
T ss_dssp             EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             cccccccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCC
Confidence            999999999999999975  689999999999999999887766655444444456778889999999999999999988


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      +++...                   +..+...+.+++|+|+ .++++++.||.+++|-+
T Consensus       314 ~~~~~~-------------------~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         314 KLVHAN-------------------ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CBCCSC-------------------TTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CEEEEE-------------------ecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            765321                   1233445788999987 57889999999877754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-31  Score=226.61  Aligned_cols=244  Identities=21%  Similarity=0.370  Sum_probs=184.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..+|...|++++|+|++ .+|++|+.|++|++|+.......     .                  .+.+|...|.+++++
T Consensus       117 ~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~-----~------------------~~~~h~~~v~~~~~~  172 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIV-----M------------------ILQGHEQDIYSLDYF  172 (388)
T ss_dssp             --CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE-----E------------------EECCCSSCEEEEEEC
T ss_pred             ccCCCCCEEEEEECCCC-Ccceecccccccccccccccccc-----c------------------ccccccccccccccc
Confidence            44677889999999874 69999999999999998643211     1                  235688999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE-----
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL-----  165 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~-----  165 (303)
                      +++..+++++.++.+++||...........   +.....++.+++.. ...+++++.|+.|++||..++.....+     
T Consensus       173 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred             cccccccccccceeeeeeeccccccccccc---cccccccccccCCC-CCeEEEEcCCCeEEEeecccCccceeeccccc
Confidence            999999999999999999986544332221   22334556666643 357899999999999999887655443     


Q ss_pred             --cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE-------------ecCCCeEEEEEEcCCCeEEE-EEc
Q 048118          166 --AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS-------------LDAGAVIHALCFSPNRYWLC-AAT  229 (303)
Q Consensus       166 --~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~-~~~  229 (303)
                        .+|.+.|++++|+|++++|++++.|+.|++||++.++....             ......+.+++|+|++.+|+ ++.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence              46788999999999999999999999999999976543211             12356789999999987665 556


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEE------EEcCCCCEEEEeecCCeEEEEeccc
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSL------NWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ||.|++||+++++.+..++.                    |...+.++      .|+|++.+|++|+.||+|++|++.+
T Consensus       329 dg~i~vwd~~~~~~~~~l~~--------------------H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQG--------------------HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEEC--------------------CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeC--------------------CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            89999999999887765542                    22223333      4688999999999999999999853

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-31  Score=219.23  Aligned_cols=219  Identities=21%  Similarity=0.354  Sum_probs=183.7

Q ss_pred             CCCcceEEEEeCCCCce----------------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCC
Q 048118           61 GHSHFVQDVVLSSDGQF----------------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLG  112 (303)
Q Consensus        61 ~~~~~i~~~~~~~~~~~----------------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~  112 (303)
                      .|...|.++.+++++++                            .+|.+.|.+++|+|++.+|++++.|+.|++||+..
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~  128 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence            56677777777777642                            26788899999999999999999999999999864


Q ss_pred             ceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCe
Q 048118          113 ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGV  192 (303)
Q Consensus       113 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  192 (303)
                      ...........|...+.+++|+|++  ..+++++.|+.|++|++.++++......|...+.+++|++++..+++++.|+.
T Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         129 PTPRIKAELTSSAPACYALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             C--EEEEEEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3322223334567789999999975  57899999999999999999988888999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccc
Q 048118          193 ILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKN  271 (303)
Q Consensus       193 v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (303)
                      +++||+++++.+..+.....+.+++|+|++.+++ ++.++.|++||+++++....                     ..+.
T Consensus       207 v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------------------~~~~  265 (337)
T d1gxra_         207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---------------------HLHE  265 (337)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---------------------CCCS
T ss_pred             ccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc---------------------cccc
Confidence            9999999999998888888999999999986665 56789999999988765421                     1233


Q ss_pred             eeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          272 IYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       272 ~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ..+.+++|+|++++|++|+.||.|++||+..
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            4578899999999999999999999999753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-30  Score=212.65  Aligned_cols=265  Identities=23%  Similarity=0.397  Sum_probs=185.4

Q ss_pred             eeeccccccccccee-eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC--------
Q 048118            5 LVLKGTMRAHTDMVT-AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG--------   75 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~-~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------   75 (303)
                      +.....|+||.+.|. ++++  + +++|||||.|++|++||+...+     +...+.+|...|.++.++++-        
T Consensus         6 ~~~~~~l~GH~~~V~s~~~~--~-g~~l~sgs~Dg~i~vWd~~~~~-----~~~~~~~h~~~V~~v~~~~~~l~s~s~D~   77 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDNIIISGSTDR   77 (342)
T ss_dssp             CCCCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEETTEEEEEETTS
T ss_pred             CCcCEEECCcCCceEEEEEE--C-CCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCCCCEEEEEeCCCccccceecc
Confidence            344556899999875 4544  4 4689999999999999986533     345566677777666665431        


Q ss_pred             cee--------------cccCCE--------------------------------------EEEEEeeCCCEEEEEeCCC
Q 048118           76 QFV--------------GHTKDV--------------------------------------LSVAFSIDNRQIVSASRDR  103 (303)
Q Consensus        76 ~~~--------------~h~~~i--------------------------------------~~i~~~~~~~~l~t~~~d~  103 (303)
                      ...              .+...+                                      ......+....+++++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            000              000000                                      1112233444566666666


Q ss_pred             cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCE
Q 048118          104 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL  183 (303)
Q Consensus       104 ~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  183 (303)
                      .|++|+......  ......|...+.+..+++    ..+++++.||.|++||++.++....+.+|...+.++.+++  ++
T Consensus       158 ~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~----~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~  229 (342)
T d2ovrb2         158 MVKVWDPETETC--LHTLQGHTNRVYSLQFDG----IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NI  229 (342)
T ss_dssp             CEEEEEGGGTEE--EEEECCCSSCEEEEEECS----SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TE
T ss_pred             eEEEeeccccee--eEEEcCcccccccccCCC----CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CE
Confidence            677766543221  111233444455555543    4799999999999999999999999999999998887764  69


Q ss_pred             EEEEeCCCeEEEEeCCCCceEEEecC----CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeecccccccccc
Q 048118          184 CASGGKDGVILLWDLAEGKRLYSLDA----GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSE  259 (303)
Q Consensus       184 l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (303)
                      |++++.|+.|++||+...+....+..    ...+.++.++++ .+++++.||.|++||+++++.+.++....        
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~--------  300 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLE--------  300 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEEECT--------
T ss_pred             EEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC-eeEEEcCCCEEEEEECCCCCEEEEEeccc--------
Confidence            99999999999999998877666542    356777777653 55667789999999999998887664321        


Q ss_pred             CccceeeccccceeEEEEEEcCCCCEEEEeecCCe----EEEEecc
Q 048118          260 ATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGV----IRVWGIG  301 (303)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~----v~~w~~~  301 (303)
                             ..++...+++++|+|++.+|++|+.||+    |++||.+
T Consensus       301 -------~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         301 -------SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             -------TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             -------CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence                   1234456789999999999999999995    9999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-30  Score=220.38  Aligned_cols=272  Identities=18%  Similarity=0.275  Sum_probs=180.2

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCcccccee-eeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVA-RRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .....++|.+.|+++++.+   ++++|||.|++|++|+....+...... ......+...+.            |.....
T Consensus         6 ~~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~   70 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH------------HVDVLQ   70 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE------------EEEEEE
T ss_pred             eeecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCce------------EeeeEe
Confidence            3445799999999999763   589999999999999975433211000 000000111000            111111


Q ss_pred             EEEEe-eCCCEEEEEeCCCcEEEEecCCce----ee----eeecCCCCccceEEEEEcCCCC---CCEEEEEeCCCcEEE
Q 048118           86 SVAFS-IDNRQIVSASRDRTIKLWNTLGEC----KY----TIQEGDAHTEWVSCVRFSPNTL---QPTIVSASWDRTVKV  153 (303)
Q Consensus        86 ~i~~~-~~~~~l~t~~~d~~i~vw~~~~~~----~~----~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~dg~i~i  153 (303)
                      .+..+ .++.++++++.|+.|++|+.....    ..    .......+...+..++|.++..   ...+++++.||.+++
T Consensus        71 ~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             eeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence            11111 123468899999999999853211    00    0111122344567777877542   246889999999999


Q ss_pred             EECCCce---------------eEEEE---cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-------
Q 048118          154 WNLSNCK---------------LRATL---AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-------  208 (303)
Q Consensus       154 wd~~~~~---------------~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------  208 (303)
                      |++....               .....   ..+...+++++|+|++ +|++|+.|++|++||+.+++++..+.       
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~  229 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN  229 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccc
Confidence            9974210               11111   2344568899999987 88999999999999999998877653       


Q ss_pred             CCCeEEEEEEcCCCeEEEEEc-CC---cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC
Q 048118          209 AGAVIHALCFSPNRYWLCAAT-EQ---SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS  284 (303)
Q Consensus       209 ~~~~v~~~~~s~~~~~l~~~~-~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  284 (303)
                      +...|++++|+|++.+|++++ |+   .|++||+++++.+..+......       ......+.+|...|++++|+|+++
T Consensus       230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~-------~~~~~~~~gH~~~V~~l~fspd~~  302 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS-------SQASLGEFAHSSWVMSLSFNDSGE  302 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------CCBSBSSCEEEEEECSSSS
T ss_pred             ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccccc-------ccceeeeecccCceeeeccCCCCC
Confidence            346899999999998776654 54   4999999999888776532211       112223456778899999999999


Q ss_pred             EEEEeecCCeEEEEecc
Q 048118          285 TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       285 ~l~~gs~Dg~v~~w~~~  301 (303)
                      +|++||.||+|++||+.
T Consensus       303 ~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             EEEEEETTSEEEEEETT
T ss_pred             eeEEECCCCEEEEEECC
Confidence            99999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5.7e-30  Score=216.85  Aligned_cols=218  Identities=17%  Similarity=0.214  Sum_probs=167.6

Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCce
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK  160 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~  160 (303)
                      .++|++++|+|++++|++|+.|+.|++|+..+...........|..+|.+++|+|++  .++++++.|+.|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~--~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--NRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT--TEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC--CEEEEEECCCeEEEEeecccc
Confidence            368999999999999999999999999998654333334345788999999999986  589999999999999998765


Q ss_pred             e--EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE---e--cCCCeEEEEEEcCCCeEEEE-EcCCc
Q 048118          161 L--RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS---L--DAGAVIHALCFSPNRYWLCA-ATEQS  232 (303)
Q Consensus       161 ~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~---~--~~~~~v~~~~~s~~~~~l~~-~~~~~  232 (303)
                      .  ...+.+|...|++++|+|+++.|++++.|+++++|++........   .  .....|.+++|+|++.++++ +.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            4  344567889999999999999999999999999999876543222   1  23568999999999876654 57999


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      |++||..............  ................+...+.+++|+|++.+|++|+.||.|++||+..
T Consensus       165 v~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTP--WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBT--TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EEEEeeccCcccccccccc--ccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            9999987654332211110  0011111223344556677789999999999999999999999999853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=203.53  Aligned_cols=242  Identities=28%  Similarity=0.424  Sum_probs=170.7

Q ss_pred             ccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEE
Q 048118            9 GTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVA   88 (303)
Q Consensus         9 ~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~   88 (303)
                      .....|...|+|++++   +++||||+.|++|++||+...+.     ..                  .+.+|++.|.+++
T Consensus         9 ~~~~~~~~~V~c~~~d---~~~l~sgs~Dg~i~vWd~~~~~~-----~~------------------~l~~H~~~V~~v~   62 (293)
T d1p22a2           9 HCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLEC-----KR------------------ILTGHTGSVLCLQ   62 (293)
T ss_dssp             ECCCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCE-----EE------------------EECCCSSCEEEEE
T ss_pred             eccCCCCCCEEEEEEc---CCEEEEEeCCCeEEEEECCCCcE-----EE------------------EEecCCCCEeeee
Confidence            3456777889998774   46899999999999999864321     11                  2456888888877


Q ss_pred             EeeCCCEEEEEeCCCcEEEEecCCceeee-----------------------------------------eecCCCCccc
Q 048118           89 FSIDNRQIVSASRDRTIKLWNTLGECKYT-----------------------------------------IQEGDAHTEW  127 (303)
Q Consensus        89 ~~~~~~~l~t~~~d~~i~vw~~~~~~~~~-----------------------------------------~~~~~~~~~~  127 (303)
                      |  ++.+|++|+.|+.|++|+........                                         ......|...
T Consensus        63 ~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          63 Y--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             C--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             c--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc
Confidence            6  56789999999999999863221100                                         0001123334


Q ss_pred             eEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe
Q 048118          128 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       128 i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  207 (303)
                      +.+..+.+    ..+++++.|+.|++||.++++....+.++...+..+.++  +..+++++.|++|++||+++.+.+...
T Consensus       141 v~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         141 VNVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             EEEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee
Confidence            44444443    257788999999999999999998999988888887775  568999999999999999999888777


Q ss_pred             cCC-CeEEEEEEcCCC-eEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCE
Q 048118          208 DAG-AVIHALCFSPNR-YWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGST  285 (303)
Q Consensus       208 ~~~-~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  285 (303)
                      ... ..+..  +++++ .+++++.||.|++||++........           ........+..|...+++++|+  +.+
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~H~~~V~~v~~d--~~~  279 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAP-----------AGTLCLRTLVEHSGRVFRLQFD--EFQ  279 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSC-----------TTTTEEEEECCCSSCCCCEEEC--SSC
T ss_pred             cccceeeee--ccccceEEEEEcCCCEEEEEECCCCcccccc-----------CCceeeEEecCCCCCEEEEEEc--CCE
Confidence            543 44544  34454 4556678999999997543221110           1111223345566667778884  568


Q ss_pred             EEEeecCCeEEEEe
Q 048118          286 LFSGYTDGVIRVWG  299 (303)
Q Consensus       286 l~~gs~Dg~v~~w~  299 (303)
                      |++||.||+|++||
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEecCCEEEEeC
Confidence            99999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.8e-29  Score=202.79  Aligned_cols=251  Identities=18%  Similarity=0.245  Sum_probs=164.1

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCcee-------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFV-------   78 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------   78 (303)
                      +++.+|+||.++|++++|+|     |+||+.||+|++|+.....          ..|...|.++.++++..+.       
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~----------~~h~~~V~~~~~~~~~~~~s~s~D~~   68 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH----------QDHSNLIVSLDNSKAQEYSSISWDDT   68 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE----------CCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred             ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC----------CCCCCCEEEEEecCCCeEEEEeeccc
Confidence            56778999999999999975     8999999999999875321          2333334444333322210       


Q ss_pred             ---------cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCC-
Q 048118           79 ---------GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWD-  148 (303)
Q Consensus        79 ---------~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-  148 (303)
                               .....+..+++++++..++++. ++.+.+|+...........   ....  +.+++|++  ..+++++.+ 
T Consensus        69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~--~~~~v~~~~~  140 (287)
T d1pgua2          69 LKVNGITKHEFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVR---LNSP--GSAVSLSQ--NYVAVGLEEG  140 (287)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEE---CSSC--EEEEEECS--SEEEEEETTT
T ss_pred             cccccccccccccceeeeeeccCCceEEEee-cccceeeeccceeeeeecc---ccce--eeeeeccC--cceeeecccc
Confidence                     1112334444444444433332 2334444432211111111   1111  23344543  356666665 


Q ss_pred             CcEEEEECCCceeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCC---
Q 048118          149 RTVKVWNLSNCKLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNR---  222 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~---  222 (303)
                      +.+++|++.+.+....+. .|...+++++|+|++.+|++|+.||.|++||+.+++.+...  .+...|.+++|+|.+   
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            579999997666555544 46788999999999999999999999999999988766543  235789999998753   


Q ss_pred             -------e-EEEEEcCCcEEEEeCCCCc-eeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCC
Q 048118          223 -------Y-WLCAATEQSIKIWDLESKS-IVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDG  293 (303)
Q Consensus       223 -------~-~l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg  293 (303)
                             . +++++.|+.|++||+++.. .+.                    .+.+|...+++++|+|++ .|++++.||
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~--------------------~~~~h~~~V~~v~~~~~~-~l~s~g~D~  279 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------------ALNAHKDGVNNLLWETPS-TLVSSGADA  279 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEE--------------------ETTSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEE--------------------EeCCCCCCeEEEEECCCC-EEEEEECCC
Confidence                   3 4455679999999987643 221                    123455668899999986 689999999


Q ss_pred             eEEEEec
Q 048118          294 VIRVWGI  300 (303)
Q Consensus       294 ~v~~w~~  300 (303)
                      +|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-29  Score=205.57  Aligned_cols=268  Identities=13%  Similarity=0.173  Sum_probs=178.9

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .++...++|++.|++|+|+|++ ++|||||.|++|++||+........ ..                   ...+|.++|.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~-~~-------------------~~~~h~~~V~   60 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVD-LL-------------------QSLRYKHPLL   60 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEE-EE-------------------EEEECSSCEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcceE-EE-------------------EecCCCCCEE
Confidence            5677789999999999999975 6999999999999999875432110 00                   1236899999


Q ss_pred             EEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee---
Q 048118           86 SVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL---  161 (303)
Q Consensus        86 ~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~---  161 (303)
                      +++|+|++ .+|++|+.|+.|++|+............ .+........+.++.  ..+++++.++.+++||++....   
T Consensus        61 ~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~wd~~~~~~~~~  137 (342)
T d1yfqa_          61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRICKYGD--DKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS-CCCCSCEEEEEEETT--TEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             EEEEeCCCCCEEEEcccccceeeeecccccccccccc-ccccccccccccccc--ccccccccccccceeecccccccee
Confidence            99999875 5899999999999999865433222221 222223334444432  5789999999999999864322   


Q ss_pred             -EEEEcCC--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEE----ecCCCeEEEEEEcCC-C-eEEEEEcCCc
Q 048118          162 -RATLAGH--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYS----LDAGAVIHALCFSPN-R-YWLCAATEQS  232 (303)
Q Consensus       162 -~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~~~v~~~~~s~~-~-~~l~~~~~~~  232 (303)
                       ......+  ......+.+.+.+..+++++.|+.|++||++..+....    ........+..+.+. + .+++.+.+|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  217 (342)
T d1yfqa_         138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe
Confidence             2222222  22345566777888999999999999999986653322    223344555555554 3 4556677999


Q ss_pred             EEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          233 IKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      +.+|+..................     .........+...+++++|+|++++|++|+.||.|++||+..
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         218 VAVEFFDDQGDDYNSSKRFAFRC-----HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEEC-----CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             EEEEEecCCcceeeccccceeee-----eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            99999865433221110000000     000011223445578899999999999999999999999853

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-28  Score=203.51  Aligned_cols=244  Identities=16%  Similarity=0.216  Sum_probs=174.7

Q ss_pred             ceeeeecCCCCCcEEEEecCCC-cEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecc-cCCEEEEEEee--C
Q 048118           17 MVTAIATPIDNSDMIVTASRDK-SIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGH-TKDVLSVAFSI--D   92 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~s~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h-~~~i~~i~~~~--~   92 (303)
                      .+++++|+|.+. .|+.++.+. .|+.|+......   ...                  ..+.+| ...|++++|+|  +
T Consensus        19 ~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~~~~---~~~------------------~~~~gh~~~~v~~v~fsP~~~   76 (325)
T d1pgua1          19 FTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDSKV---PPV------------------VQFTGHGSSVVTTVKFSPIKG   76 (325)
T ss_dssp             CCCCCEEETTTT-EEEEEETTEEEEEECCSSCCSS---CSE------------------EEECTTTTSCEEEEEECSSTT
T ss_pred             CeEEEEECCCCC-EEEEEeCCCEEEEEEeCCCCCc---cce------------------EEEeCCCCCCEEEEEEeeCCC
Confidence            357899998864 666665443 456665432111   000                  124466 46799999998  5


Q ss_pred             CCEEEEEeCCCcEEEEecCCcee-----e-eeecCCCCccceEEEEEcCCCCCCEEEEE--eCCCcEEEEECCCceeEEE
Q 048118           93 NRQIVSASRDRTIKLWNTLGECK-----Y-TIQEGDAHTEWVSCVRFSPNTLQPTIVSA--SWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        93 ~~~l~t~~~d~~i~vw~~~~~~~-----~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~dg~i~iwd~~~~~~~~~  164 (303)
                      +.+|++|+.|+.|++||......     . .......+..+|.+++|++++.  .++++  +.++.+++|+..++++...
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGE  154 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEEEEeeccccccee
Confidence            67999999999999999742111     0 0111234667899999999863  44444  4578899999999999999


Q ss_pred             EcCCCCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCCceEEEec----CCCeEEEEEEcCC-CeEE-EEEcCCcEEEEe
Q 048118          165 LAGHTGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEGKRLYSLD----AGAVIHALCFSPN-RYWL-CAATEQSIKIWD  237 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l-~~~~~~~i~iwd  237 (303)
                      +.+|...|++++|+|++++ +++++.|+.+++||++..+......    ....|.+++|+|+ +.++ +++.|+.|++||
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence            9999999999999998875 6789999999999998877655542    3467999999997 4555 466799999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +++++.+..+..+...                ....+.++.| |++.+|++|+.||.|++||+.
T Consensus       235 ~~~~~~~~~l~~~~~~----------------v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         235 GKSGEFLKYIEDDQEP----------------VQGGIFALSW-LDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             TTTCCEEEECCBTTBC----------------CCSCEEEEEE-SSSSEEEEEETTSEEEEEETT
T ss_pred             eccccccccccccccc----------------cccceeeeec-cCCCEEEEEeCCCeEEEEECC
Confidence            9998877655421100                0111233444 688999999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6e-28  Score=197.76  Aligned_cols=204  Identities=20%  Similarity=0.320  Sum_probs=156.6

Q ss_pred             eecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +.||.+.|++++|+|++++|+||+.|+.|++||+....... .....|...|.+++|+|++   .+++++.|+.+++|+.
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~-~~~~~h~~~v~~v~~~~~g---~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-VFPDVHATMITGIKTTSKG---DLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-CSSCSCSSCEEEEEECTTS---CEEEEETTTEEEEECS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEcCCCCCcEEEEEeeccc---eeecccceeeEEEecc
Confidence            56899999999999999999999999999999986533222 2234678889999999985   3677889999999986


Q ss_pred             CCcee--------------E-------------------EEE-------cCCCCCeeEEEECCCCCEEEEEeCCCeEEEE
Q 048118          157 SNCKL--------------R-------------------ATL-------AGHTGYVNTVAVSPDGSLCASGGKDGVILLW  196 (303)
Q Consensus       157 ~~~~~--------------~-------------------~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw  196 (303)
                      .....              .                   ..+       ......+.+++|+|++++|++++.|+.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            32110              0                   000       0122356788999999999999999999999


Q ss_pred             eCCCCceE--EEecCCCeEEEEEEcCCCeEEE-EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeecccccee
Q 048118          197 DLAEGKRL--YSLDAGAVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIY  273 (303)
Q Consensus       197 d~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (303)
                      |+++++..  ........|.+++|+|++.+++ ++.++.|++||+.++.......                 .+..|...
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-----------------~~~~h~~~  226 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-----------------SWTFHTAK  226 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-----------------CCCCCSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccc
Confidence            99877643  3345577899999999986665 5568999999998765443221                 12334556


Q ss_pred             EEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          274 CTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       274 ~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+++|+|++++|++|+.||.|++||+.
T Consensus       227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccceEEEcCCCEEEEEECC
Confidence            7889999999999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.5e-27  Score=191.51  Aligned_cols=222  Identities=22%  Similarity=0.374  Sum_probs=177.8

Q ss_pred             ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           76 QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        76 ~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      .+.||+++|++++|+|++.+|+||+.|+.|+|||+.....  ......|...|.+++|+|++  ..+++++.++.+..|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~~h~~~V~~~~~~~~~--~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSG--KLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--CEEECCCSSCEEEEEECTTS--SEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE--EEEEeCCCCcEEEEeeeccc--cccccccccccccccc
Confidence            4679999999999999999999999999999999864322  22234688899999999986  5788999999999999


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEE-EEcCCcE
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLC-AATEQSI  233 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~~~i  233 (303)
                      ....+....+..|...+.++.++|+++.+++++.|+.+++||+++++.+..+. ....+.+++|+|++.+++ ++.|+.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            98888888888899999999999999999999999999999999998887775 456789999999987665 4568999


Q ss_pred             EEEeCCCCceeeeeeecccc--------ccc----------------------------------cccCccceeeccccc
Q 048118          234 KIWDLESKSIVEDLKVDLKT--------EAE----------------------------------KSEATTATTTIKKKN  271 (303)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~--------~~~----------------------------------~~~~~~~~~~~~~~~  271 (303)
                      ++|++++++.+..+......        ...                                  ..........+..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            99999888766544321000        000                                  000011123344556


Q ss_pred             eeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          272 IYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       272 ~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..+.+++|+|++++|++|+.||.|++||+.
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            678899999999999999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.6e-26  Score=189.51  Aligned_cols=226  Identities=22%  Similarity=0.304  Sum_probs=175.3

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCC----------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDG----------   75 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------   75 (303)
                      ..+..+.+|...|++++|+|++ .++++|+.|+.+++|+....... ......+.+|.............          
T Consensus        88 ~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (340)
T d1tbga_          88 NKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT  165 (340)
T ss_dssp             EEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSC-CCEEEEECCCSSCEEEEEEEETTEEEEEETTTE
T ss_pred             eeEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccc-cccceeccccccccccccccccccccccccccc
Confidence            3455688899999999999875 68999999999999997644322 11223334444333222211111          


Q ss_pred             -------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEE
Q 048118           76 -------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI  142 (303)
Q Consensus        76 -------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  142 (303)
                                   ....+...+....+.+.+.++++++.|+.|++||......  ......|...|.+++|+|++  ..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~--~~~~~~h~~~i~~v~~~p~~--~~l  241 (340)
T d1tbga_         166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFPNG--NAF  241 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--EEEECCCSSCEEEEEECTTS--SEE
T ss_pred             ccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcE--EEEEeCCCCCeEEEEECCCC--CEE
Confidence                         1235667788999999999999999999999999865432  22234678899999999986  589


Q ss_pred             EEEeCCCcEEEEECCCceeEEEE--cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-CCeEEEEEEc
Q 048118          143 VSASWDRTVKVWNLSNCKLRATL--AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFS  219 (303)
Q Consensus       143 ~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s  219 (303)
                      ++++.|+.|++||+........+  ..+...+++++|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+
T Consensus       242 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s  321 (340)
T d1tbga_         242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            99999999999999888776655  34567899999999999999999999999999999999988864 6789999999


Q ss_pred             CCCeEEE-EEcCCcEEEEe
Q 048118          220 PNRYWLC-AATEQSIKIWD  237 (303)
Q Consensus       220 ~~~~~l~-~~~~~~i~iwd  237 (303)
                      |++.+|+ ++.||.|++||
T Consensus       322 ~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         322 DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEccCCEEEEeC
Confidence            9986555 56799999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.7e-26  Score=192.34  Aligned_cols=262  Identities=18%  Similarity=0.247  Sum_probs=177.3

Q ss_pred             eecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC-----CCE
Q 048118           21 IATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID-----NRQ   95 (303)
Q Consensus        21 v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~-----~~~   95 (303)
                      +..+.....++++++.|+.+++|++................             -....+...+..++|.++     +.+
T Consensus        72 ~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (393)
T d1sq9a_          72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL-------------LDSDMKKHSFWALKWGASNDRLLSHR  138 (393)
T ss_dssp             EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC-------------SCTTGGGSCEEEEEEECCC----CEE
T ss_pred             eccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccce-------------eeeccCCCceEEEEEecCCCcccccE
Confidence            33443334578899999999999986543322111111100             011235566778888765     357


Q ss_pred             EEEEeCCCcEEEEecCCce----------------eeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           96 IVSASRDRTIKLWNTLGEC----------------KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        96 l~t~~~d~~i~vw~~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      +++++.|+.+++|++....                .........+...+.+++|+|++   .+++|+.|+.|++||+.++
T Consensus       139 ~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~~~~  215 (393)
T d1sq9a_         139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTL  215 (393)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTT
T ss_pred             EEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEeeccc
Confidence            8999999999999862110                01111222345568899999974   7899999999999999988


Q ss_pred             eeEEE------EcCCCCCeeEEEECCCCCEEEEEeCCC---eEEEEeCCCCceEEEec--------------CCCeEEEE
Q 048118          160 KLRAT------LAGHTGYVNTVAVSPDGSLCASGGKDG---VILLWDLAEGKRLYSLD--------------AGAVIHAL  216 (303)
Q Consensus       160 ~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~--------------~~~~v~~~  216 (303)
                      +....      +.+|..+|++++|+|++++|++|+.|+   .|++||+++++.+.++.              +...|.++
T Consensus       216 ~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l  295 (393)
T d1sq9a_         216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  295 (393)
T ss_dssp             EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeee
Confidence            76544      456889999999999999999999887   48999999998877663              34579999


Q ss_pred             EEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeeccccccc--cccCccce-eeccccceeEEEEEEcCCC---------
Q 048118          217 CFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVDLKTEAE--KSEATTAT-TTIKKKNIYCTSLNWSVDG---------  283 (303)
Q Consensus       217 ~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~sp~~---------  283 (303)
                      +|+|++.+|++ +.|+.|++||+++++.+..++.+...-..  ......+. ..+.  ...+..+.|.+.+         
T Consensus       296 ~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  373 (393)
T d1sq9a_         296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA--EPGVFDVKFLKKGWRSGMGADL  373 (393)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS--SCCEEEEEEECTTTSBSTTCTT
T ss_pred             ccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE--EcccceEEECccCceeccccCC
Confidence            99999876654 56999999999999998877643221100  00000000 0011  1124556666532         


Q ss_pred             -CEEEEeecCCeEEEEec
Q 048118          284 -STLFSGYTDGVIRVWGI  300 (303)
Q Consensus       284 -~~l~~gs~Dg~v~~w~~  300 (303)
                       ..|++++.|+.+|+|..
T Consensus       374 ~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         374 NESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             SCEEEEEETTTEEEEEEE
T ss_pred             CCEEEEEEcCCeEEEEeC
Confidence             45999999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1e-24  Score=182.40  Aligned_cols=191  Identities=13%  Similarity=-0.005  Sum_probs=150.9

Q ss_pred             eeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEE
Q 048118           20 AIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSA   99 (303)
Q Consensus        20 ~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~   99 (303)
                      .-.|+|.+++++|+++. +.|.+|+......     .                    -.+|.+.|.+++|+|+|++|+++
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~-----~--------------------~~~~~~~v~~~~~spDg~~l~~~   60 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYV-----L--------------------KVPEPLRIRYVRRGGDTKVAFIH   60 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBE-----E--------------------ECSCCSCEEEEEECSSSEEEEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcE-----E--------------------EccCCCCEEEEEECCCCCEEEEE
Confidence            34588844577888765 6999998854221     0                    12578899999999999999887


Q ss_pred             eCCC--cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEE
Q 048118          100 SRDR--TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV  177 (303)
Q Consensus       100 ~~d~--~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  177 (303)
                      +.+.  .|++||..+.....   ...|...+.+++|+|++  ..+++++.++.+++|++.+++....+..|...+.+++|
T Consensus        61 ~~~~g~~v~v~d~~~~~~~~---~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (360)
T d1k32a3          61 GTREGDFLGIYDYRTGKAEK---FEENLGNVFAMGVDRNG--KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI  135 (360)
T ss_dssp             EETTEEEEEEEETTTCCEEE---CCCCCCSEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred             EcCCCCEEEEEECCCCcEEE---eeCCCceEEeeeecccc--cccceeccccccccccccccceeeeeecccccccchhh
Confidence            7654  78999987654332   24577789999999986  57999999999999999999988888889999999999


Q ss_pred             CCCCCEEEEEe----------CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCC
Q 048118          178 SPDGSLCASGG----------KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESK  241 (303)
Q Consensus       178 ~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~  241 (303)
                      +|+|++|+.+.          .++.+++||+.+++..........+..++|+|++..|+. +.++.+.+||....
T Consensus       136 spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            99999998643          345799999998877666666778889999999876654 56788899986543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.4e-23  Score=167.02  Aligned_cols=221  Identities=15%  Similarity=0.218  Sum_probs=154.1

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEe---------CCCCce-ecc
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVL---------SSDGQF-VGH   80 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~-~~h   80 (303)
                      .++|...|.++.++++  ..+++++.|+++++|++.........  ..+..+......+..         ...+.. ...
T Consensus        42 ~~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKHEFGSQP--KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             ECCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEEECSSCE--EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCEEEEEecCC--CeEEEEeeccccccccccccccccce--eeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence            4689999999999864  46899999999999987642211000  000001111110111         111111 111


Q ss_pred             cCCEEEEEEeeCCCEEEEEeCCC-cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           81 TKDVLSVAFSIDNRQIVSASRDR-TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      .......++++++..+++++.|+ .+++|+...... .......+...+.+++|+|++  .++++|+.||.|++||+.++
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSYISISPSE--TYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE-EEECSSCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTT
T ss_pred             cccceeeeeeccCcceeeeccccceeeeeeccccce-eeeeeeccCCceeEEEeccCc--cccccccccccccceeeccc
Confidence            11122356778888888887765 799999754322 222334566789999999986  57999999999999999887


Q ss_pred             eeEE-EEcCCCCCeeEEEECCC----------CCEEEEEeCCCeEEEEeCCCCc-eEEEec-CCCeEEEEEEcCCCeEEE
Q 048118          160 KLRA-TLAGHTGYVNTVAVSPD----------GSLCASGGKDGVILLWDLAEGK-RLYSLD-AGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       160 ~~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~  226 (303)
                      +... .+..|..+|.+++|+|.          +.+|++|+.|++|++||++++. .+..+. +...|.+++|+|++.+++
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEE
Confidence            7554 46789999999999875          4689999999999999997644 444443 467899999999999999


Q ss_pred             EEcCCcEEEEeC
Q 048118          227 AATEQSIKIWDL  238 (303)
Q Consensus       227 ~~~~~~i~iwd~  238 (303)
                      ++.|+.|++|++
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-23  Score=173.82  Aligned_cols=151  Identities=20%  Similarity=0.329  Sum_probs=115.8

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      ++...+.++.+++++.++++++.|+.|++|+......  ......|...|.+++++++    .+++++.||.|++||+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~~~~----~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCCCEEEECSS----EEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccccceeeecccccceEEeeecccccc--ccccccccccccccccccc----eeeeeecccccccccccc
Confidence            4666788899999999999999999999999865432  2223467888999999763    799999999999999987


Q ss_pred             ceeEEEEcCCCCCeeEE-EECCCCCEEEEEeCCCeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118          159 CKLRATLAGHTGYVNTV-AVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKI  235 (303)
Q Consensus       159 ~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~i~i  235 (303)
                      ....  +..|...+..+ .++++++++++| .|++|++||+++++.+...  .....|.+++|+|+..+++++.||.+++
T Consensus       273 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l  349 (355)
T d1nexb2         273 YSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFL  349 (355)
T ss_dssp             CCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEE
T ss_pred             ccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEE
Confidence            6643  34455555554 456677776655 5899999999999887543  3457899999999866556677998766


Q ss_pred             EeC
Q 048118          236 WDL  238 (303)
Q Consensus       236 wd~  238 (303)
                      |.+
T Consensus       350 ~~~  352 (355)
T d1nexb2         350 EIL  352 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.8e-22  Score=163.54  Aligned_cols=221  Identities=25%  Similarity=0.382  Sum_probs=154.3

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccc-------eeee---------------------
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYG-------VARR---------------------   57 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~-------~~~~---------------------   57 (303)
                      ..+.++++|.+.|++++++|   ++|++|+.|+++++|+.........       ....                     
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  124 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  124 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             CEEEEEeCCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeec
Confidence            45667899999999999975   4899999999999999754211100       0000                     


Q ss_pred             -------eecCCCcceEEEE--------eCCCC--------------ceecccCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 048118           58 -------RLTGHSHFVQDVV--------LSSDG--------------QFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW  108 (303)
Q Consensus        58 -------~~~~~~~~i~~~~--------~~~~~--------------~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw  108 (303)
                             .+...........        -..++              .+.+|...+.  .+.+++.++++++.|+.|++|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~  202 (342)
T d2ovrb2         125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVW  202 (342)
T ss_dssp             SSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEE
T ss_pred             ccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEe
Confidence                   0000000000000        00011              1224554444  455678899999999999999


Q ss_pred             ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC---CCCCeeEEEECCCCCEEE
Q 048118          109 NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG---HTGYVNTVAVSPDGSLCA  185 (303)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~  185 (303)
                      |......  +.....|...+.++.++++    ++++++.|+.|++||+...+....+..   |...+.++.++  +++++
T Consensus       203 d~~~~~~--~~~~~~~~~~v~~~~~~~~----~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  274 (342)
T d2ovrb2         203 DVETGNC--IHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVI  274 (342)
T ss_dssp             ETTTCCE--EEEECCCCSCEEEEEEETT----EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEE
T ss_pred             eccccee--eeEecccccceeEEecCCC----EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeE
Confidence            9865432  2233467778888888763    799999999999999988887777765   44566666665  57899


Q ss_pred             EEeCCCeEEEEeCCCCceEEEec------CCCeEEEEEEcCCCeEEEEEc-CC----cEEEEeCC
Q 048118          186 SGGKDGVILLWDLAEGKRLYSLD------AGAVIHALCFSPNRYWLCAAT-EQ----SIKIWDLE  239 (303)
Q Consensus       186 ~~~~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~-~~----~i~iwd~~  239 (303)
                      +|+.||+|++||+++++.++++.      ....|.+++|+|++.+++++. ||    +|++||++
T Consensus       275 s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            99999999999999999887763      245799999999998887764 55    49999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.2e-22  Score=163.51  Aligned_cols=245  Identities=12%  Similarity=0.139  Sum_probs=164.0

Q ss_pred             ccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEe
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFS   90 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~   90 (303)
                      ..+|.++|++++|+|+++.+|++|+.|++|++|+........     ..                 ...+........+.
T Consensus        52 ~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~-----~~-----------------~~~~~~~~~~~~~~  109 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-----AL-----------------TNNEANLGICRICK  109 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-----EC-----------------BSCCCCSCEEEEEE
T ss_pred             ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc-----cc-----------------cccccccccccccc
Confidence            446999999999998877899999999999999986543211     00                 01122333455667


Q ss_pred             eCCCEEEEEeCCCcEEEEecCCc--eeeeeecCCC--CccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee---EE
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGE--CKYTIQEGDA--HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL---RA  163 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~---~~  163 (303)
                      ++...+++++.|+.+++||....  ..........  .........+.+..  ..+++++.|+.|++||+...+.   ..
T Consensus       110 ~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~  187 (342)
T d1yfqa_         110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTI  187 (342)
T ss_dssp             ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS--SEEEEEESTTEEEEEESSCCTTCCCEE
T ss_pred             cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC--CceeeecCCCcEEEEecccCcccceee
Confidence            78889999999999999996321  1111111111  11222334444443  4789999999999999876542   22


Q ss_pred             EEcCCCCCeeEEEECC-CCCEEEEEeCCCeEEEEeCCCCceEE---------Ee-------cCCCeEEEEEEcCCCeEEE
Q 048118          164 TLAGHTGYVNTVAVSP-DGSLCASGGKDGVILLWDLAEGKRLY---------SL-------DAGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       164 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~---------~~-------~~~~~v~~~~~s~~~~~l~  226 (303)
                      ....+...+.+..+.| ++..+++++.||.+.+|++.......         ..       .....+++++|+|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la  267 (342)
T d1yfqa_         188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY  267 (342)
T ss_dssp             EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred             eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE
Confidence            2333445566666655 67789999999999999986432111         10       1234689999999986555


Q ss_pred             -EEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          227 -AATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       227 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                       ++.||.|++||+++++.+..+..                   .+..  ..++|+|++.+|++|+.|+.+++|..
T Consensus       268 sg~~Dg~v~vWD~~~~~~l~~~~~-------------------~~~~--~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         268 TAGSDGIISCWNLQTRKKIKNFAK-------------------FNED--SVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEECCC-------------------CSSS--EEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             EECCCCEEEEEECCCCcEEEEecC-------------------CCCC--EEEEEEeCCCEEEEEEcCCcEEEeee
Confidence             56799999999999887654421                   0111  33678889999999999988776643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-20  Score=150.34  Aligned_cols=190  Identities=27%  Similarity=0.458  Sum_probs=137.7

Q ss_pred             cccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC
Q 048118           79 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN  158 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~  158 (303)
                      .|...|+|++  +++++|+||+.|+.|+|||+.....  ......|...|.+++|++    ..+++|+.|+.|++|++..
T Consensus        13 ~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~--~~~l~~H~~~V~~v~~~~----~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          13 ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQYDE----RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCE--EEEECCCSSCEEEEECCS----SEEEEEETTSCEEEEESSS
T ss_pred             CCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcE--EEEEecCCCCEeeeeccc----ceeeccccccccccccccc
Confidence            5677888765  5789999999999999999864322  222356888999998854    3799999999999999765


Q ss_pred             ceeEEE-------------------------------------------EcCCCCCeeEEEECCCCCEEEEEeCCCeEEE
Q 048118          159 CKLRAT-------------------------------------------LAGHTGYVNTVAVSPDGSLCASGGKDGVILL  195 (303)
Q Consensus       159 ~~~~~~-------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i  195 (303)
                      +.....                                           +..|...+..+.+.  ...+++++.|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV  162 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceee
Confidence            432211                                           22344455555544  456788889999999


Q ss_pred             EeCCCCceEEEecC-CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeE
Q 048118          196 WDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYC  274 (303)
Q Consensus       196 wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (303)
                      ||+++++.+..+.. ...+..+.+++ ..+++++.|+.|++||+++.+.+.....                    +...+
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~v  221 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEG--------------------HEELV  221 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECC--------------------CSSCE
T ss_pred             ecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeeeecc--------------------cceee
Confidence            99998888777653 45677777764 4566777899999999988776544321                    11112


Q ss_pred             EEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          275 TSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       275 ~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                        ..+++++.+|++|+.||.|++||+.
T Consensus       222 --~~~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         222 --RCIRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             --EEEECCSSEEEEEETTSCEEEEEHH
T ss_pred             --eeccccceEEEEEcCCCEEEEEECC
Confidence              2356788999999999999999973

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=6.7e-19  Score=142.94  Aligned_cols=245  Identities=14%  Similarity=0.125  Sum_probs=175.6

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      ++++++... +.+..++++|++..++++++.++.|++||+...+.     ...+                  ..| ..+.
T Consensus        23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-----~~~~------------------~~~-~~~~   77 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----IATV------------------PAG-SSPQ   77 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----EEEE------------------ECS-SSEE
T ss_pred             eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-----eeee------------------ecc-cccc
Confidence            344444433 45688999998765667888999999999875432     1111                  112 2457


Q ss_pred             EEEEeeCCCEE-EEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           86 SVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        86 ~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      .+.|++++..+ +++..++.+.+|+...........   +.....++.++|++. ..++++..++.+.+|+..+.+....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dg~-~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---TGKSPLGLALSPDGK-KLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccceeeecccccceeeeecc---ccccceEEEeecCCC-eeeeeeccccceeeeeccccceeee
Confidence            88999998855 455677889999986543322221   223467899999873 3556677788999999999888777


Q ss_pred             EcCCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-Ec---CCcEEEEeCC
Q 048118          165 LAGHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-AT---EQSIKIWDLE  239 (303)
Q Consensus       165 ~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~---~~~i~iwd~~  239 (303)
                      +..+ .....+.++|++..+++++. ++.+.+|+....+.............++|++++..+.. ..   ++.|++||+.
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             cccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecC
Confidence            7654 45788999999998877765 46777888877777777777778888999999865533 22   3679999999


Q ss_pred             CCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEE-EEeecCCeEEEEecc
Q 048118          240 SKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTL-FSGYTDGVIRVWGIG  301 (303)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~gs~Dg~v~~w~~~  301 (303)
                      +++++..+...                     ..+..++|+|||++| ++++.||.|++||+.
T Consensus       233 t~~~~~~~~~~---------------------~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         233 TNKITARIPVG---------------------PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             TTEEEEEEECC---------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEcCC---------------------CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            98876654321                     124679999999976 577889999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1e-20  Score=157.75  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=145.5

Q ss_pred             EEEEee-CCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CC-CcEEEEECCCceeE
Q 048118           86 SVAFSI-DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WD-RTVKVWNLSNCKLR  162 (303)
Q Consensus        86 ~i~~~~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~d-g~i~iwd~~~~~~~  162 (303)
                      .-.|+| +|+++|+++. +.|.+|+..+.....+    .|...|.+++|+|++  ..+++++ .+ ..|++||..+++..
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~----~~~~~v~~~~~spDg--~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV----PEPLRIRYVRRGGDT--KVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC----SCCSCEEEEEECSSS--EEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc----cCCCCEEEEEECCCC--CEEEEEEcCCCCEEEEEECCCCcEE
Confidence            357999 8999998875 7899999866543322    467789999999987  3455544 43 37999999887654


Q ss_pred             EEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-CCCeEEEEEEcCCCeEEEEEc-----------C
Q 048118          163 ATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAAT-----------E  230 (303)
Q Consensus       163 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-----------~  230 (303)
                       .+..|...+.+++|+|++++|++++.++.+++|++.+++....+. ....+.+++|+|++.+++.+.           +
T Consensus        80 -~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          80 -KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             -ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             -EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence             567789999999999999999999999999999999888766654 345678899999998887542           3


Q ss_pred             CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          231 QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      +.+++||+++++.....                     .+......+.|+|+|++|++++.|+.+++|+..
T Consensus       159 ~~~~v~d~~~~~~~~~~---------------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAAT---------------------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEEEEEETTTTEEEECS---------------------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cceeeeccccCceeeec---------------------ccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            45899999876543211                     122234568899999999999999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.6e-19  Score=145.54  Aligned_cols=226  Identities=15%  Similarity=0.195  Sum_probs=152.2

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE-EEEeCCCcEEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKL  107 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t~~~d~~i~v  107 (303)
                      ++++|++.|++|++||+++.+..     ..++          .      ..+...+..++|+|+|+++ ++++.++.|.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~-----~~i~----------~------~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v   60 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVD-----KVIT----------I------ADAGPTPMVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-----EEEE----------C------TTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEE-----EEEE----------C------CCCCCCccEEEECCCCCEEEEEECCCCeEEE
Confidence            68999999999999999764321     1111          1      1122346679999999986 56678999999


Q ss_pred             EecCCcee-eeeecC--CCCccceEEEEEcCCCCCCEEEEEe------------CCCcEEEEECCCceeEEEEcCCCCCe
Q 048118          108 WNTLGECK-YTIQEG--DAHTEWVSCVRFSPNTLQPTIVSAS------------WDRTVKVWNLSNCKLRATLAGHTGYV  172 (303)
Q Consensus       108 w~~~~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~i  172 (303)
                      ||...... ......  ..+...+..++|+|++.  .++++.            .+..+.+||..+++....+..+ ..+
T Consensus        61 ~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~  137 (337)
T d1pbyb_          61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQI  137 (337)
T ss_dssp             EETTTCCEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSC
T ss_pred             EECCCCcEEEEEecCCCcccccceeeEEEcCCCc--EEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCc
Confidence            99865322 222111  11122345688999863  444433            4678899999998888777653 567


Q ss_pred             eEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC-------------------------------------------
Q 048118          173 NTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-------------------------------------------  209 (303)
Q Consensus       173 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------------------------------------  209 (303)
                      ..++++|+|+++++++.+  +.+||..+++....+..                                           
T Consensus       138 ~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T d1pbyb_         138 TMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             CCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             eEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeec
Confidence            889999999999888654  66788876654433210                                           


Q ss_pred             ------------------------CCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCcccee
Q 048118          210 ------------------------GAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATT  265 (303)
Q Consensus       210 ------------------------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (303)
                                              ......++++|++.++++. ++.|++||+++++.+..+...               
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~---------------  279 (337)
T d1pbyb_         216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP---------------  279 (337)
T ss_dssp             GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS---------------
T ss_pred             ccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcCC---------------
Confidence                                    0112234455555554433 578999999888877654321               


Q ss_pred             eccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          266 TIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       266 ~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                            ..+.+++|+|||++|++|+.||.|++||+..
T Consensus       280 ------~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         280 ------HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ------SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ------CCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                  1235689999999999999999999999853

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=7.2e-20  Score=157.06  Aligned_cols=248  Identities=12%  Similarity=0.086  Sum_probs=162.6

Q ss_pred             cEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 048118           29 DMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLW  108 (303)
Q Consensus        29 ~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw  108 (303)
                      -++++.+.|++|++||..+.+.     ...                  +..| ..+..++|+|||+++++++.|+.|++|
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~-----~~~------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vw   88 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKI-----VKV------------------IDTG-YAVHISRMSASGRYLLVIGRDARIDMI   88 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSE-----EEE------------------EECC-SSEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcE-----EEE------------------EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEE
Confidence            3568899999999999976432     111                  2223 357899999999999999999999999


Q ss_pred             ecCCcee---eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCe-----------eE
Q 048118          109 NTLGECK---YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYV-----------NT  174 (303)
Q Consensus       109 ~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-----------~~  174 (303)
                      |+.....   ..+.....|...+.++.|+|++. ..++++..++.+++||..++++...+..|...+           ..
T Consensus        89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~-~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             ETTSSSCEEEEEEECCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             EccCCceeEEEEEeCCCCCcceEEeeeecCCCC-EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence            9864321   12233334555566777888873 345666789999999999988777666554433           34


Q ss_pred             EEECCCCCEEEEEe-CCCeEEEEeCCCCc--eEEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCceeeeeee
Q 048118          175 VAVSPDGSLCASGG-KDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       175 ~~~~~~~~~l~~~~-~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      +..++++..++... ..+.+.+++.....  .+..+.....+..+.|+|++.++.++  .+..+.+++..+++.+.....
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            55555555544433 23455555554433  22334556778899999998765444  466799999988877655432


Q ss_pred             ccccc-----------------------c-----cc------ccCccceeeccccceeEEEEEEcCCCCEEEE-------
Q 048118          250 DLKTE-----------------------A-----EK------SEATTATTTIKKKNIYCTSLNWSVDGSTLFS-------  288 (303)
Q Consensus       250 ~~~~~-----------------------~-----~~------~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-------  288 (303)
                      .....                       .     ..      .........+.++...+..++|+|++++|++       
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence            11000                       0     00      0000122344555666788999999999994       


Q ss_pred             eecCCeEEEEecc
Q 048118          289 GYTDGVIRVWGIG  301 (303)
Q Consensus       289 gs~Dg~v~~w~~~  301 (303)
                      ++.|++|++||+.
T Consensus       328 ~~~~~tv~vwd~~  340 (426)
T d1hzua2         328 ARISQSVAVFDLK  340 (426)
T ss_dssp             HHHHTCEEEEETT
T ss_pred             cccCCEEEEEECC
Confidence            6779999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.6e-18  Score=146.58  Aligned_cols=193  Identities=13%  Similarity=0.090  Sum_probs=140.6

Q ss_pred             EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 048118           30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWN  109 (303)
Q Consensus        30 ~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~  109 (303)
                      ++++.+.|++|.+||......     ...                  +..| ..+..++|+|||+++++++.|+.|++||
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v-----~~~------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d   89 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEI-----KTV------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMID   89 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCE-----EEE------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcE-----EEE------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEE
Confidence            469999999999999875432     111                  1223 3588999999999999999999999999


Q ss_pred             cCCcee---eeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC-----------CCCeeEE
Q 048118          110 TLGECK---YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH-----------TGYVNTV  175 (303)
Q Consensus       110 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~~  175 (303)
                      +.....   ..+.....+...+.+..|+|++ +..++++..++.|++||..++++...+..+           ......+
T Consensus        90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG-~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2          90 LWMKEPTTVAEIKIGSEARSIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             TTSSSCCEEEEEECCSEEEEEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             eeCCCceEEEEEecCCCCCCeEEecccCCCC-CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence            754321   2223233344445556677776 335678889999999999998887766543           2345678


Q ss_pred             EECCCCCEE-EEEeCCCeEEEEeCCCCce--EEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCceeeee
Q 048118          176 AVSPDGSLC-ASGGKDGVILLWDLAEGKR--LYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIVEDL  247 (303)
Q Consensus       176 ~~~~~~~~l-~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~  247 (303)
                      .++|++..+ ++...++.|.+||..+.+.  +..+..+.....++|+|++.+++++  .++.+.++|.++++.+...
T Consensus       169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         169 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            899999876 4556789999999987664  4455667788999999998765444  3668999999888776554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=8.5e-19  Score=150.28  Aligned_cols=169  Identities=11%  Similarity=0.076  Sum_probs=105.5

Q ss_pred             ccCCEEEEEEeeCCCEEEEEe-CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCC-EEEEEeCCCcEEEEECC
Q 048118           80 HTKDVLSVAFSIDNRQIVSAS-RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQP-TIVSASWDRTVKVWNLS  157 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~dg~i~iwd~~  157 (303)
                      +...+..+.|+|++++++++. .+..+.+++.......................+.+..... ..+....|+.+..|+..
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~  284 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  284 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred             cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence            334455677777776655554 3444566665433222111111111111122222221111 22334567888888764


Q ss_pred             C-------ceeEEEEcCCCCCeeEEEECCCCCEEEE-------EeCCCeEEEEeCCCCceEEEe----------cCCCeE
Q 048118          158 N-------CKLRATLAGHTGYVNTVAVSPDGSLCAS-------GGKDGVILLWDLAEGKRLYSL----------DAGAVI  213 (303)
Q Consensus       158 ~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~d~~v~iwd~~~~~~~~~~----------~~~~~v  213 (303)
                      .       .+....+.+|...+..++|+|++++|++       ++.|++|++||+.+++...++          .....+
T Consensus       285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv  364 (426)
T d1hzua2         285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV  364 (426)
T ss_dssp             TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred             ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE
Confidence            3       3667888999999999999999999984       456889999999988766543          224468


Q ss_pred             EEEEEcCCCeEEEEE------cCCcEEEEeCCCCceeeeee
Q 048118          214 HALCFSPNRYWLCAA------TEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       214 ~~~~~s~~~~~l~~~------~~~~i~iwd~~~~~~~~~~~  248 (303)
                      .+++|||||..+.++      .++.|.+||.++.++...++
T Consensus       365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence            899999999654322      36789999999998776554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=9.1e-18  Score=144.00  Aligned_cols=181  Identities=11%  Similarity=0.002  Sum_probs=123.6

Q ss_pred             eecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEE
Q 048118            6 VLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVL   85 (303)
Q Consensus         6 ~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~   85 (303)
                      .++.++..| ..+..++|+|++ +++++++.|+++++||+...+........                  ...+|.+.+.
T Consensus        53 ~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~------------------~~~~~~~~~~  112 (432)
T d1qksa2          53 EIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------IGSEARSIET  112 (432)
T ss_dssp             CEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEE------------------CCSEEEEEEE
T ss_pred             cEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEe------------------cCCCCCCeEE
Confidence            566677777 468999999976 68999999999999998754322110000                  1123555566


Q ss_pred             EEEEeeCCCEE-EEEeCCCcEEEEecCCceeeeeecC---------CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           86 SVAFSIDNRQI-VSASRDRTIKLWNTLGECKYTIQEG---------DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        86 ~i~~~~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      +..|+|||+++ +++..++.|++||............         .........+.++|++. ..+++...++.|.+||
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEEEETTTTEEEEEE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC-EEEEEEccCCeEEEEE
Confidence            67788999975 7888899999999754322111100         01223356778888763 3556777889999999


Q ss_pred             CCCceeEEEEc-CCCCCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCCceEEEe
Q 048118          156 LSNCKLRATLA-GHTGYVNTVAVSPDGSLCASGGK-DGVILLWDLAEGKRLYSL  207 (303)
Q Consensus       156 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~  207 (303)
                      ..+.+...... .+......++|+|+|+++++++. +..+.++|..+++.+..+
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            98765433222 23456789999999998877764 668999999887766544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=3.8e-16  Score=126.38  Aligned_cols=222  Identities=15%  Similarity=0.201  Sum_probs=159.9

Q ss_pred             EEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEE-EEEeCCCcEEEEe
Q 048118           31 IVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQI-VSASRDRTIKLWN  109 (303)
Q Consensus        31 ~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l-~t~~~d~~i~vw~  109 (303)
                      +++++.|++|.+||+.+.+..     ..+                   .....+..++|+|+|+++ ++++.++.|++||
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~-----~~i-------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d   60 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVT-----ATI-------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIID   60 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE-----EEE-------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEE-----EEE-------------------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEE
Confidence            567889999999998764321     111                   122456789999999976 5677889999999


Q ss_pred             cCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEE-EEe
Q 048118          110 TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA-SGG  188 (303)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~  188 (303)
                      ..........  ..+. .+..+.+++++. ..++++..++.+.+|+..+++....+..+ .....+.++|+++.++ ++.
T Consensus        61 ~~t~~~~~~~--~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          61 TATNNVIATV--PAGS-SPQGVAVSPDGK-QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             TTTTEEEEEE--ECSS-SEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEET
T ss_pred             CCCCceeeee--eccc-cccccccccccc-cccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeec
Confidence            8654332221  1222 367889999863 35667778889999999998887777654 4677899999998775 555


Q ss_pred             CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE-c-CCcEEEEeCCCCceeeeeeeccccccccccCccceee
Q 048118          189 KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA-T-EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTT  266 (303)
Q Consensus       189 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (303)
                      .++.+.+|+..+...+..+.....+..++++|++..+.++ . .+.+.+|+....+........                
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  199 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE----------------  199 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------------
T ss_pred             cccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccccc----------------
Confidence            6889999999999988888777778899999987655443 3 466778887776655433321                


Q ss_pred             ccccceeEEEEEEcCCCCEEEEeec---CCeEEEEeccc
Q 048118          267 IKKKNIYCTSLNWSVDGSTLFSGYT---DGVIRVWGIGR  302 (303)
Q Consensus       267 ~~~~~~~~~~~~~sp~~~~l~~gs~---Dg~v~~w~~~~  302 (303)
                           .....++|++++..+++++.   ++.|.+||+..
T Consensus       200 -----~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         200 -----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             -----SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -----CCcceeeccccccccccccccceeeeeeeeecCC
Confidence                 12356789999998776543   46899999853

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=9.1e-18  Score=138.66  Aligned_cols=252  Identities=14%  Similarity=0.076  Sum_probs=155.6

Q ss_pred             eeccccc-ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            6 VLKGTMR-AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         6 ~~~~~~~-~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      .++.++. .|...+.++.|+|++..++++++.++.|.+||+.......     ......            ....+...+
T Consensus        29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~-----~~~~~~------------~~~~~~~~~   91 (346)
T d1jmxb_          29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-----HANLSS------------VPGEVGRSM   91 (346)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----EEESCC------------STTEEEECS
T ss_pred             CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee-----eecccc------------cccccCCce
Confidence            4455554 3455678999999877667888899999999987543211     111000            011122344


Q ss_pred             EEEEEeeCCCEEEEEe------------CCCcEEEEecCCceee-eeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcE
Q 048118           85 LSVAFSIDNRQIVSAS------------RDRTIKLWNTLGECKY-TIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTV  151 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~------------~d~~i~vw~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i  151 (303)
                      ..++|+|+|+++++++            .+..+.+|+....... .+... .....+..+.+++++   .++..  ++.+
T Consensus        92 ~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~--~~~~  165 (346)
T d1jmxb_          92 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDG---SLYVA--GPDI  165 (346)
T ss_dssp             SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTS---CEEEE--SSSE
T ss_pred             EEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecCCC---EEEEe--CCcc
Confidence            5688999998887665            3566777775432111 11000 011123334455543   23333  3568


Q ss_pred             EEEECCCceeEEEEcCCCCCeeEEEECCCCC--------------------------EEEEEeCCCeEEEEeCCCCceEE
Q 048118          152 KVWNLSNCKLRATLAGHTGYVNTVAVSPDGS--------------------------LCASGGKDGVILLWDLAEGKRLY  205 (303)
Q Consensus       152 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~l~~~~~d~~v~iwd~~~~~~~~  205 (303)
                      .+|+..+++....+..+.. ...+.++|++.                          .+.++..++.+.+||+.++....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d1jmxb_         166 YKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  244 (346)
T ss_dssp             EEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             eEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE
Confidence            8899988877776654322 22223333332                          23344455677888888776544


Q ss_pred             Ee--cCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCC
Q 048118          206 SL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDG  283 (303)
Q Consensus       206 ~~--~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  283 (303)
                      ..  .....+..+.+++++..++...++.|.+||..+++.+..+...                     ..+.+++|+|||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~---------------------~~~~~va~s~DG  303 (346)
T d1jmxb_         245 QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD---------------------HTYYCVAFDKKG  303 (346)
T ss_dssp             EEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECS---------------------SCCCEEEECSSS
T ss_pred             EEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCC---------------------CCEEEEEEcCCC
Confidence            33  3455677788888877677777789999999998877654321                     123568999999


Q ss_pred             CEEEEeecCCeEEEEeccc
Q 048118          284 STLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       284 ~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ++|++|+.||.|++||+..
T Consensus       304 ~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         304 DKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             SCEEEESBSSEEEEEETTT
T ss_pred             CEEEEEeCCCcEEEEECcc
Confidence            9999999999999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1e-15  Score=125.75  Aligned_cols=258  Identities=11%  Similarity=0.108  Sum_probs=158.5

Q ss_pred             eeecccccccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCE
Q 048118            5 LVLKGTMRAHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDV   84 (303)
Q Consensus         5 ~~~~~~~~~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i   84 (303)
                      ++++..+ .|.+.+..++|+|++.-++++++.|+.|++|++.......... .                   ...+...+
T Consensus        27 l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~-~-------------------~~~~~~~p   85 (333)
T d1ri6a_          27 LTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-A-------------------ESALPGSL   85 (333)
T ss_dssp             EEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-E-------------------EEECSSCC
T ss_pred             eEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe-e-------------------ecccCCCc
Confidence            4444433 4778899999999875555777779999999987543221100 0                   01133456


Q ss_pred             EEEEEeeCCCEEEEEeC-CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEE
Q 048118           85 LSVAFSIDNRQIVSASR-DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA  163 (303)
Q Consensus        85 ~~i~~~~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~  163 (303)
                      ..++|+|+|+++++++. ++.+.+|+..............+...+.++.++|++. ..+.....+..+.+|+........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~-~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecce-eeeccccccceeeEEEeccCCcce
Confidence            67999999999888875 6688888764433222222223444567888999863 233444456679999986543211


Q ss_pred             ------EEcCCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCCCce----EEEe-------cCCCeEEEEEEcCCCeEE
Q 048118          164 ------TLAGHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAEGKR----LYSL-------DAGAVIHALCFSPNRYWL  225 (303)
Q Consensus       164 ------~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~----~~~~-------~~~~~v~~~~~s~~~~~l  225 (303)
                            ...........++|++++..+.... ..+...+++......    ....       ........+++++++.++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence                  1122334567899999998876554 567788888654321    1111       112356678899998655


Q ss_pred             EEE--cCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEecc
Q 048118          226 CAA--TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGIG  301 (303)
Q Consensus       226 ~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~~  301 (303)
                      ...  .++.+.+|++.............                 .....+.+++|+|||++|++++ .++.|++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQ-----------------PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEE-----------------ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEe-----------------CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            443  46789999876543222111100                 0011234689999999877664 56899999764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=3e-16  Score=128.83  Aligned_cols=241  Identities=10%  Similarity=0.074  Sum_probs=149.3

Q ss_pred             eeccccc--ccccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCce------
Q 048118            6 VLKGTMR--AHTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQF------   77 (303)
Q Consensus         6 ~~~~~~~--~h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------   77 (303)
                      +++.++.  .+...+.+++++|++..++++++.|+.|.+||+...+............+...+..+.++|++++      
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence            3444443  33455789999998765557888999999999976543221111100000111123344444321      


Q ss_pred             -----------------------------ecccCCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeee-eecCCCCcc-
Q 048118           78 -----------------------------VGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYT-IQEGDAHTE-  126 (303)
Q Consensus        78 -----------------------------~~h~~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~~-  126 (303)
                                                   ..+...+..++|+|+|+++++++.+  +.+||........ ......... 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~  179 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAET  179 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTT
T ss_pred             CCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccc
Confidence                                         1233456789999999999988755  6778865432211 111000000 


Q ss_pred             --ceEEEEEcCCCCC---------------CEEEEEeCCCcEEEEECCCceeEE-EEcCCCCCeeEEEECCCCCEEEEEe
Q 048118          127 --WVSCVRFSPNTLQ---------------PTIVSASWDRTVKVWNLSNCKLRA-TLAGHTGYVNTVAVSPDGSLCASGG  188 (303)
Q Consensus       127 --~i~~~~~~~~~~~---------------~~~~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~  188 (303)
                        ......+.+....               .....+..++.+.+||..+++... .+..+......+.++|++.+++.+ 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  258 (337)
T d1pbyb_         180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-  258 (337)
T ss_dssp             BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred             eecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-
Confidence              0000001110000               001112334568899998876543 345566778889999999988765 


Q ss_pred             CCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCCceeeeeeec
Q 048118          189 KDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       189 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                       ++.+++||+.+++.+..+.....+.+++|+|+|..+++ +.++.|.+||.++.+.++.+++.
T Consensus       259 -~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         259 -YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             -ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             -cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence             58999999999999998888888899999999976654 46899999999999998887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=6.5e-14  Score=116.83  Aligned_cols=202  Identities=10%  Similarity=-0.031  Sum_probs=128.5

Q ss_pred             ccccccceeeeecCCCCCcEEEEe----cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEE
Q 048118           11 MRAHTDMVTAIATPIDNSDMIVTA----SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLS   86 (303)
Q Consensus        11 ~~~h~~~v~~v~~~~~~~~~~~t~----s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~   86 (303)
                      ...+..++..++++|++...+++.    +.++.+.+||....+..     ..+.                  .+.  ...
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~-----~~~~------------------~~~--~~~   70 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----GHVN------------------GGF--LPN   70 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE-----EEEe------------------CCC--Ccc
Confidence            445777899999999987655542    23456888886543321     1111                  111  225


Q ss_pred             EEEeeCCCEEEEEe----------CCCcEEEEecCCceeeeeecCCCCccc-------eEEEEEcCCCCCCEEEEEeCCC
Q 048118           87 VAFSIDNRQIVSAS----------RDRTIKLWNTLGECKYTIQEGDAHTEW-------VSCVRFSPNTLQPTIVSASWDR  149 (303)
Q Consensus        87 i~~~~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~dg  149 (303)
                      +.|+|+|+++++++          .++.|.+||..........  ..+...       ...+.|++++...++.....++
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI--ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE--ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            78999999888765          4578999998654322111  111111       1346677776443344445567


Q ss_pred             cEEEEECCCceeEEEEcCCCCCeeEEEECCCCCE-EEEEeCCCeEEEEeCCCCceEEEecC-------CCeEEEEEEcCC
Q 048118          150 TVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSL-CASGGKDGVILLWDLAEGKRLYSLDA-------GAVIHALCFSPN  221 (303)
Q Consensus       150 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~  221 (303)
                      .+.+|+....+.....    ....++.++|+++. +++.+.|+++.+||...++.......       ........+.++
T Consensus       149 ~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         149 AVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             ceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            7888888766554432    34567889998875 46788999999999988776544321       123445667777


Q ss_pred             CeEEEEEcCCcEEEEeCCCCce
Q 048118          222 RYWLCAATEQSIKIWDLESKSI  243 (303)
Q Consensus       222 ~~~l~~~~~~~i~iwd~~~~~~  243 (303)
                      +.++..+.++.+.+|+......
T Consensus       225 ~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         225 GRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ceEEEecCCceEEEEEcCCCeE
Confidence            7788888889999999876644

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.9e-13  Score=111.89  Aligned_cols=237  Identities=17%  Similarity=0.232  Sum_probs=148.4

Q ss_pred             EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEe-CCCcEEEE
Q 048118           30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSAS-RDRTIKLW  108 (303)
Q Consensus        30 ~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~-~d~~i~vw  108 (303)
                      .+++++.|++|++|++.......  ..                   +...|.+.+..++|+|+|++|++++ .|+.|++|
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~--~~-------------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~   64 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALT--LT-------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY   64 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEE--EE-------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeE--EE-------------------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEE
Confidence            46888999999999986432110  00                   1234667888999999999885554 58999999


Q ss_pred             ecCCce-eeeeecCCCCccceEEEEEcCCCCCCEEEEEe-CCCcEEEEECCCceeEE--EEcCCCCCeeEEEECCCCCEE
Q 048118          109 NTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSAS-WDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLC  184 (303)
Q Consensus       109 ~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l  184 (303)
                      ++.... .............+..++|+|++  ..+++++ .++.+.+|+........  ....+...+.++.++|+++++
T Consensus        65 ~i~~~~~~~~~~~~~~~~~~p~~l~~spDg--~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          65 RIAPDDGALTFAAESALPGSLTHISTDHQG--QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             EECTTTCCEEEEEEEECSSCCSEEEECTTS--SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             EEeCCCCcEEEeeecccCCCceEEEEcCCC--CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence            875321 11111111122335679999987  3455555 57789999876654332  334456678889999999988


Q ss_pred             EEEe-CCCeEEEEeCCCCceEE-------EecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCcee--eeeeeccc
Q 048118          185 ASGG-KDGVILLWDLAEGKRLY-------SLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIV--EDLKVDLK  252 (303)
Q Consensus       185 ~~~~-~d~~v~iwd~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~--~~~~~~~~  252 (303)
                      ++++ .+..+.+|+........       ........+.++|++++..+...  ..+...+|++......  ........
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            7776 46689999987643221       22345567889999998665444  3566777776433211  10010000


Q ss_pred             cccccccCccceeeccccceeEEEEEEcCCCCEEE-EeecCCeEEEEecc
Q 048118          253 TEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLF-SGYTDGVIRVWGIG  301 (303)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~gs~Dg~v~~w~~~  301 (303)
                      ..            ..........++++|++++++ ++..++.+.+|++.
T Consensus       223 ~~------------~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~  260 (333)
T d1ri6a_         223 PE------------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  260 (333)
T ss_dssp             CT------------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ec------------CCCccccceeEEEecccCceeeecccCCeEEEEEEc
Confidence            00            001122345678899998655 55678899999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=4.2e-14  Score=117.08  Aligned_cols=239  Identities=14%  Similarity=0.066  Sum_probs=141.6

Q ss_pred             ceeeeecCCCCCcEEEEe----cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeC
Q 048118           17 MVTAIATPIDNSDMIVTA----SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSID   92 (303)
Q Consensus        17 ~v~~v~~~~~~~~~~~t~----s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~   92 (303)
                      ++...+.+|++...+++.    +.+.++.+||....+.     ...+                  ..  +....++|+|+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-----~~~~------------------~~--g~~~~~a~SpD   57 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----IGMI------------------DG--GFLPNPVVADD   57 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----EEEE------------------EE--CSSCEEEECTT
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-----EEEE------------------EC--CCCCceEEcCC
Confidence            344445677776655553    3456799999865432     1111                  11  22236889999


Q ss_pred             CCEEEEE----------eCCCcEEEEecCCcee-eeeecCCCCc----cceEEEEEcCCCCCCEEEEEeCCCcEEEEECC
Q 048118           93 NRQIVSA----------SRDRTIKLWNTLGECK-YTIQEGDAHT----EWVSCVRFSPNTLQPTIVSASWDRTVKVWNLS  157 (303)
Q Consensus        93 ~~~l~t~----------~~d~~i~vw~~~~~~~-~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~  157 (303)
                      |++|++.          +.|+.|++||...... ..+.....+.    .....+.|+|++...+++..+.+..+.+|+..
T Consensus        58 g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  137 (355)
T d2bbkh_          58 GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  137 (355)
T ss_dssp             SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence            9877654          4578999999864322 1221111111    11234778888643223333556778888887


Q ss_pred             CceeEEEEcCC---------------------------------------------CCCeeEEEECCCCCEEEEEeCCCe
Q 048118          158 NCKLRATLAGH---------------------------------------------TGYVNTVAVSPDGSLCASGGKDGV  192 (303)
Q Consensus       158 ~~~~~~~~~~~---------------------------------------------~~~i~~~~~~~~~~~l~~~~~d~~  192 (303)
                      +++....+..+                                             ...+....+.+++..++.++.++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d2bbkh_         138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK  217 (355)
T ss_dssp             TTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE
T ss_pred             CCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCe
Confidence            76544332211                                             111223455566667777888899


Q ss_pred             EEEEeCCCCceEEE--ecC-----------CCeEEEEEEcCCCeEEEEE-c----------CCcEEEEeCCCCceeeeee
Q 048118          193 ILLWDLAEGKRLYS--LDA-----------GAVIHALCFSPNRYWLCAA-T----------EQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       193 v~iwd~~~~~~~~~--~~~-----------~~~v~~~~~s~~~~~l~~~-~----------~~~i~iwd~~~~~~~~~~~  248 (303)
                      +++|++..++....  ...           ......+++++++..+... .          .+.|.+||..+++.+..+.
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~  297 (355)
T d2bbkh_         218 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  297 (355)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec
Confidence            99999877653211  100           0112347788887655432 1          1369999999888776553


Q ss_pred             eccccccccccCccceeeccccceeEEEEEEcCCCC--EEEEeecCCeEEEEecc
Q 048118          249 VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS--TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l~~gs~Dg~v~~w~~~  301 (303)
                      .                     ...+.+++|+|||+  ++++++.|+.|++||+.
T Consensus       298 ~---------------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         298 M---------------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             E---------------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             C---------------------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            2                     12245689999997  45678889999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=1.3e-12  Score=107.15  Aligned_cols=158  Identities=12%  Similarity=0.098  Sum_probs=112.4

Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc
Q 048118           87 VAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA  166 (303)
Q Consensus        87 i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~  166 (303)
                      ++|+++++++++++.|+.|.+||+.......... -.+...+.+++|+|++. ..++++..++.|++||+.+++....+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~-~~~~~~p~~l~~spDG~-~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE-cCCCCCcceEEECCCCC-EEEEEECCCCcEEEEeCccCeeeeeec
Confidence            3578899999999999999999997654322211 12334467899999873 345677789999999999998877665


Q ss_pred             CCC------CCeeEEEECCCCCEEEEEe------------CCCeEEEEeCCCCceEEEe---cCCCeEEEEEEcCCCeEE
Q 048118          167 GHT------GYVNTVAVSPDGSLCASGG------------KDGVILLWDLAEGKRLYSL---DAGAVIHALCFSPNRYWL  225 (303)
Q Consensus       167 ~~~------~~i~~~~~~~~~~~l~~~~------------~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l  225 (303)
                      ...      ..+..++|+|+|+++++++            .++.+.+||..+++....+   .....+..+.+++++.++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            322      2356789999999887765            4678899998776543322   233445556677777766


Q ss_pred             EEEcCCcEEEEeCCCCceeeeee
Q 048118          226 CAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       226 ~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      +.  ++.+.+|++.+++.+..+.
T Consensus       160 ~~--~~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         160 VA--GPDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             EE--SSSEEEECTTTCCEEEEEC
T ss_pred             Ee--CCcceEEEccCCCEEEEEe
Confidence            54  4578999998887776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=2.3e-11  Score=101.07  Aligned_cols=167  Identities=9%  Similarity=-0.008  Sum_probs=109.9

Q ss_pred             cccCCEEEEEEeeCCCE-EEEEeCCCcEEEEecCCceeeeeecC----CCCccceEEEEEcCCCCCCEEEEEeCCCcEEE
Q 048118           79 GHTKDVLSVAFSIDNRQ-IVSASRDRTIKLWNTLGECKYTIQEG----DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKV  153 (303)
Q Consensus        79 ~h~~~i~~i~~~~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~i  153 (303)
                      .+...+.++.++++++. +++.+.|+.+.+|+............    ...........+.++.   .++..+.++.+.+
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~  238 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG---RIVWPVYSGKILQ  238 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc---eEEEecCCceEEE
Confidence            44455678889999864 57889999999999754332221110    1111122334444442   4566778889999


Q ss_pred             EECCCceeEE--EEcCC----------CCCeeEEEECCCCCEE----------EEEeCCCeEEEEeCCCCceEEEecCCC
Q 048118          154 WNLSNCKLRA--TLAGH----------TGYVNTVAVSPDGSLC----------ASGGKDGVILLWDLAEGKRLYSLDAGA  211 (303)
Q Consensus       154 wd~~~~~~~~--~~~~~----------~~~i~~~~~~~~~~~l----------~~~~~d~~v~iwd~~~~~~~~~~~~~~  211 (303)
                      |+..+.....  ....+          ......++++|++..+          ++...++.+.+||..+++.+..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~  318 (373)
T d2madh_         239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH  318 (373)
T ss_pred             EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC
Confidence            9887654321  11111          1123344555555443          445567789999999999999988888


Q ss_pred             eEEEEEEcCCCe--EE-EEEcCCcEEEEeCCCCceeeeee
Q 048118          212 VIHALCFSPNRY--WL-CAATEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       212 ~v~~~~~s~~~~--~l-~~~~~~~i~iwd~~~~~~~~~~~  248 (303)
                      .+..++|+|||.  ++ +.+.++.|++||+.+++.+..+.
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            899999999985  23 34568899999999999887664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=7.7e-12  Score=103.11  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=79.9

Q ss_pred             CEEEEEeCCCcEEEEECCCceeEE--EEcCC----------CCCeeEEEECCCCCEEEEEeCC----------CeEEEEe
Q 048118          140 PTIVSASWDRTVKVWNLSNCKLRA--TLAGH----------TGYVNTVAVSPDGSLCASGGKD----------GVILLWD  197 (303)
Q Consensus       140 ~~~~~~~~dg~i~iwd~~~~~~~~--~~~~~----------~~~i~~~~~~~~~~~l~~~~~d----------~~v~iwd  197 (303)
                      ..++.++.++.+++|++..++...  ....+          ......++++|++..++....+          ..|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence            357778889999999987765321  11111          1223457889999887665543          3799999


Q ss_pred             CCCCceEEEecCCCeEEEEEEcCCCe--EEEEE-cCCcEEEEeCCCCceeeeee
Q 048118          198 LAEGKRLYSLDAGAVIHALCFSPNRY--WLCAA-TEQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~-~~~~i~iwd~~~~~~~~~~~  248 (303)
                      ..+++.+.++..+..+.+++|+||+.  +++++ .++.|++||++++++++.+.
T Consensus       287 ~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         287 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            99999888887777788999999985  33333 47999999999999887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.36  E-value=2.1e-11  Score=101.40  Aligned_cols=246  Identities=10%  Similarity=0.001  Sum_probs=141.0

Q ss_pred             ecccccccccceeeeecCCCCCcEEEEe----------cCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc
Q 048118            7 LKGTMRAHTDMVTAIATPIDNSDMIVTA----------SRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ   76 (303)
Q Consensus         7 ~~~~~~~h~~~v~~v~~~~~~~~~~~t~----------s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   76 (303)
                      +++++.++...  .+.++|++. +++..          +.|++|++||.........               +... ...
T Consensus        58 ~~~~~~~~~~~--~~a~spDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---------------i~~p-~~~  118 (368)
T d1mdah_          58 TLGHSLGAFLS--LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---------------IELP-DAP  118 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---------------EEET-TSC
T ss_pred             EEEEEeCCCCC--cceECCCCC-EEEEEcccCccccccccCCeEEEEECCCCcEeee---------------ecCC-ccc
Confidence            34445555433  577888764 45543          3478899999875432211               1111 111


Q ss_pred             eecccCCEEEEEEeeCCCEEEEEe-CCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEE
Q 048118           77 FVGHTKDVLSVAFSIDNRQIVSAS-RDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWN  155 (303)
Q Consensus        77 ~~~h~~~i~~i~~~~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd  155 (303)
                      ..........++|+|+|++++.+. .++.+.+||+............. ...     ..|.+ ...++..+.||.+.+++
T Consensus       119 ~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~-~~~-----~~~~~-~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS-CFH-----IHPGA-AATHYLGSCPASLAASD  191 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS-CCC-----CEEEE-TTEEECCCCTTSCEEEE
T ss_pred             eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC-cce-----EccCC-CceEEEEcCCCCEEEEE
Confidence            001111233588999999988775 57899999986543222111111 111     11222 23567778899998888


Q ss_pred             CCCceeEEE------EcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCC-------------CeEEEE
Q 048118          156 LSNCKLRAT------LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-------------AVIHAL  216 (303)
Q Consensus       156 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------------~~v~~~  216 (303)
                      +........      ...+...+....+.+++..+.+.  .+.+.++++..+.........             .....+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  269 (368)
T d1mdah_         192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             ecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeE
Confidence            765432211      12233445567788887666544  456777777655433221100             112346


Q ss_pred             EEcCCCeEEEEE-c-C--------CcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC--
Q 048118          217 CFSPNRYWLCAA-T-E--------QSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS--  284 (303)
Q Consensus       217 ~~s~~~~~l~~~-~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~--  284 (303)
                      ++++++..+... . +        ..|++||..+++.+..+..                     ...+.+++|+|||+  
T Consensus       270 a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~---------------------~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---------------------GHDSDAIIAAQDGASD  328 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---------------------EEEECEEEECCSSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC---------------------CCceeEEEECCCCCEE
Confidence            788886544332 1 1        3599999999887665432                     12346789999997  


Q ss_pred             EEEEeecCCeEEEEecc
Q 048118          285 TLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       285 ~l~~gs~Dg~v~~w~~~  301 (303)
                      .++++..|+.|++||..
T Consensus       329 ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEETTTTEEEEEESS
T ss_pred             EEEEeCCCCeEEEEECC
Confidence            35677889999999974

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.34  E-value=1.6e-10  Score=97.04  Aligned_cols=247  Identities=10%  Similarity=0.063  Sum_probs=150.8

Q ss_pred             EEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCc---------------------eecccCCEEEEE
Q 048118           30 MIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQ---------------------FVGHTKDVLSVA   88 (303)
Q Consensus        30 ~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~h~~~i~~i~   88 (303)
                      .|+|++.+|+|++|++.++...     ...+         ++++++.                     ...|...+....
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l-----~~Ip---------Vfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~   78 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMREL-----MRIP---------VFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD   78 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEE-----EEEC---------SSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEE-----EEEE---------eEcCCCCEEEEECCccceEEecccccccCcccCCCcceec
Confidence            3678888999999999754321     1111         0122210                     112333444555


Q ss_pred             EeeCCCEEEE-EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC-----------------c
Q 048118           89 FSIDNRQIVS-ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR-----------------T  150 (303)
Q Consensus        89 ~~~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg-----------------~  150 (303)
                      ..|||+++.. ...++.|.++|+.......+.. -+....+..++|+|++...+++..+.+.                 .
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~  157 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITH-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM  157 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence            6799998754 4578899999986543322221 1234457889999987555555554432                 2


Q ss_pred             EEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC----------------------------------------
Q 048118          151 VKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD----------------------------------------  190 (303)
Q Consensus       151 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------------------------  190 (303)
                      +..+|..+.+...++... +....+.++|+|+++++++.+                                        
T Consensus       158 ~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            345777777766555433 356789999999988777643                                        


Q ss_pred             -CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCceeeeeeeccccccccccCccceeec
Q 048118          191 -GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTI  267 (303)
Q Consensus       191 -~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (303)
                       +.+.+++......+..+..+...+.+.++|||.++.++  .++.|.+||+++-+..-+-+........         .-
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~---------~~  307 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV---------AE  307 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE---------EC
T ss_pred             CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE---------ee
Confidence             34445555555556666655566779999999877655  4789999998642211000000000000         00


Q ss_pred             cccceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          268 KKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       268 ~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ..........+|.++|..+.+.+.|..|..|++.
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccc
Confidence            0112234556899999989999999999999974

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=5.1e-11  Score=102.40  Aligned_cols=165  Identities=13%  Similarity=0.066  Sum_probs=108.5

Q ss_pred             EEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC-----CCCCeeEEEECCCCCEEEEEeC---------CCeEEE
Q 048118          130 CVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG-----HTGYVNTVAVSPDGSLCASGGK---------DGVILL  195 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~---------d~~v~i  195 (303)
                      .+.|.+++   .++. ..++.+.+||+.+++....+..     |...|.++.|||||++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~---~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDH---EYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSS---EEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCC---EEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            46677765   2343 4578899999999887654443     4467999999999999988753         567889


Q ss_pred             EeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEE
Q 048118          196 WDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCT  275 (303)
Q Consensus       196 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (303)
                      ||+.+++..........+....|||||..++...++.+++|+..+++............... ......... .......
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~-g~~d~~~~~-~~~~~~~  174 (470)
T d2bgra1          97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYN-GITDWVYEE-EVFSAYS  174 (470)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEE-SBCCHHHHH-HTSSSSB
T ss_pred             EECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccc-cccceeeee-eecCCcc
Confidence            99998875433344567889999999999999999999999998886554321110000000 000000000 0001123


Q ss_pred             EEEEcCCCCEEEEeecCCe-EEEEec
Q 048118          276 SLNWSVDGSTLFSGYTDGV-IRVWGI  300 (303)
Q Consensus       276 ~~~~sp~~~~l~~gs~Dg~-v~~w~~  300 (303)
                      .+.|||||++|+....|.+ +..|.+
T Consensus       175 ~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ccEECCCCCccceeEecCCcCceEEE
Confidence            4779999999998877654 655544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.17  E-value=2.3e-09  Score=89.84  Aligned_cols=235  Identities=9%  Similarity=0.075  Sum_probs=134.5

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      |..........|++..++++...+..|.++|+..++....   ..                   ..+...+..++|+|+|
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~i---i~-------------------iP~g~gphgi~~spdg  127 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI---TH-------------------IPNVQAIHGLRLQKVP  127 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE---EE-------------------CTTCCCEEEEEECCSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeE---Ee-------------------cCCCCCccceEEeccC
Confidence            4445566667777766667778899999999976532110   00                   1234567888999888


Q ss_pred             C--EEEEEeCCCcEE------------------EEecCCcee-eeeecCCCCccceEEEEEcCCCCCCEEEEEeC-----
Q 048118           94 R--QIVSASRDRTIK------------------LWNTLGECK-YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW-----  147 (303)
Q Consensus        94 ~--~l~t~~~d~~i~------------------vw~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  147 (303)
                      +  +++..+.+ .+.                  .+|..+... .++..    ......+.++|++.  .+++.+.     
T Consensus       128 ~t~YV~~~~~~-~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v----~~~p~~v~~spdGk--~a~vt~~nse~~  200 (441)
T d1qnia2         128 KTNYVFCNAEF-VIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV----DGNLDNTDADYTGK--YATSTCYNSERA  200 (441)
T ss_dssp             BCCEEEEEECS-CEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE----SSCCCCEEECSSSS--EEEEEESCTTCC
T ss_pred             CEEEEEeccCC-cccccCcccccccccccceEEeecCccceeeEEEec----CCCccceEECCCCC--EEEEEecCCCce
Confidence            7  44444433 232                  233322111 11111    11234577777763  2333322     


Q ss_pred             ------------------------------------CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEE-EEeCC
Q 048118          148 ------------------------------------DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCA-SGGKD  190 (303)
Q Consensus       148 ------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d  190 (303)
                                                          ++.+.+++....+....+..... ...+.++|||++++ ++..+
T Consensus       201 ~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~  279 (441)
T d1qnia2         201 VDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLS  279 (441)
T ss_dssp             SSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTS
T ss_pred             EEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcC
Confidence                                                23444554444455556655443 46799999999875 55679


Q ss_pred             CeEEEEeCCCCce------------EEEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeCCCC----------ceeeee
Q 048118          191 GVILLWDLAEGKR------------LYSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDLESK----------SIVEDL  247 (303)
Q Consensus       191 ~~v~iwd~~~~~~------------~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~----------~~~~~~  247 (303)
                      ++|.+||+.+.+.            ......+-.....+|.+++..+++. -|.+|..|++...          .++..+
T Consensus       280 ~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~  359 (441)
T d1qnia2         280 PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL  359 (441)
T ss_dssp             SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE
T ss_pred             CcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecc
Confidence            9999999865221            1111222234456899998766554 5889999997421          122222


Q ss_pred             eeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe---ecCC
Q 048118          248 KVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG---YTDG  293 (303)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g---s~Dg  293 (303)
                      .++.+               .+|...+.+.+++|||++|+++   |.|.
T Consensus       360 ~v~y~---------------~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         360 DVQYQ---------------PGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             ECSSC---------------EEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             ccccC---------------CCCCccccccccCCCCcEEEecCcccccc
Confidence            22211               1333344556689999999999   5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=6.4e-09  Score=86.08  Aligned_cols=201  Identities=7%  Similarity=-0.066  Sum_probs=112.2

Q ss_pred             eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118           19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS   98 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t   98 (303)
                      ..++|+|++..++++...++.+.+||.......     .....+           ......+          .....++.
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~-----~~~~~~-----------~~~~~~~----------~~~~~~v~  180 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSA-----------SCFHIHP----------GAAATHYL  180 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEE-----EEEECS-----------SCCCCEE----------EETTEEEC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEe-----EEeecc-----------CcceEcc----------CCCceEEE
Confidence            357899987655555557899999998754321     111100           0000011          11234444


Q ss_pred             EeCCCcEEEEecCCceeeee----ecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc--CC----
Q 048118           99 ASRDRTIKLWNTLGECKYTI----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA--GH----  168 (303)
Q Consensus        99 ~~~d~~i~vw~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~----  168 (303)
                      .+.|+.+.+++.........    .....+...+....+.+++   . +.....+.+.+++...+.......  .+    
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG---M-LVWAVASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT---E-EEECBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc---E-EEEecCCCEEEEeecCCceEEEeeccccccee
Confidence            55555555555432211100    0111122223345555553   1 222344556666665443322111  00    


Q ss_pred             ------CCCeeEEEECCCCCEEEEEeCC---------CeEEEEeCCCCceEEEecCCCeEEEEEEcCCCe-EE-EE-EcC
Q 048118          169 ------TGYVNTVAVSPDGSLCASGGKD---------GVILLWDLAEGKRLYSLDAGAVIHALCFSPNRY-WL-CA-ATE  230 (303)
Q Consensus       169 ------~~~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l-~~-~~~  230 (303)
                            ......++++|++..+.....+         ..|.+||..+++.+.++.....+.+++|+||+. ++ ++ ..+
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence                  1122357888988876554322         368999999999888887777888999999974 33 33 357


Q ss_pred             CcEEEEeCCCCceeeeeee
Q 048118          231 QSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~  249 (303)
                      +.|++||..+++.+..+++
T Consensus       337 ~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         337 EVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             TEEEEEESSSCEEEEECCC
T ss_pred             CeEEEEECCCCCEEEEEEC
Confidence            8999999999999887764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.04  E-value=9.1e-09  Score=88.01  Aligned_cols=146  Identities=13%  Similarity=0.134  Sum_probs=98.1

Q ss_pred             eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118           19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS   98 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t   98 (303)
                      ..+.|.+++ .++.  ..|+.+.+|+........     .+             ....+..|...|.+..|+|||++|+.
T Consensus        20 ~~~~W~~d~-~~~~--~~~~~~~~~~~~t~~~~~-----~~-------------~~~~~~~~~~~i~~~~~SpDg~~i~~   78 (470)
T d2bgra1          20 YSLRWISDH-EYLY--KQENNILVFNAEYGNSSV-----FL-------------ENSTFDEFGHSINDYSISPDGQFILL   78 (470)
T ss_dssp             CCCEECSSS-EEEE--ESSSCEEEEETTTCCEEE-----EE-------------CTTTTTTSSSCCCEEEECTTSSEEEE
T ss_pred             cCCEeCCCC-EEEE--EcCCcEEEEECCCCCEEE-----EE-------------chhhhhhccCccceeEECCCCCEEEE
Confidence            356677654 5554  357889999987543221     11             12245567778999999999999988


Q ss_pred             EeC---------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC--
Q 048118           99 ASR---------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG--  167 (303)
Q Consensus        99 ~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--  167 (303)
                      ++.         ++.+.+||+.+.....   ...+...+..+.|+|++.  .++. ..++.+.+|+..+++.......  
T Consensus        79 ~~~~~~~~r~s~~~~~~l~d~~~~~~~~---l~~~~~~~~~~~~SPDG~--~ia~-~~~~~l~~~~~~~g~~~~~t~~~~  152 (470)
T d2bgra1          79 EYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGH--KLAY-VWNNDIYVKIEPNLPSYRITWTGK  152 (470)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEECSSTT--CEEE-EETTEEEEESSTTSCCEECCSCCB
T ss_pred             EECCcceeeeccCceEEEEECCCCcccc---cccCCccccccccccCcc--eeeE-eecccceEEECCCCceeeeeeccC
Confidence            754         4567889987654322   234566788999999984  3554 4577899999887765443221  


Q ss_pred             ----------------CCCCeeEEEECCCCCEEEEEeCCC
Q 048118          168 ----------------HTGYVNTVAVSPDGSLCASGGKDG  191 (303)
Q Consensus       168 ----------------~~~~i~~~~~~~~~~~l~~~~~d~  191 (303)
                                      ..+....+.|||||++|+....|.
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence                            122345688999999999886543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.98  E-value=7.5e-07  Score=73.37  Aligned_cols=160  Identities=8%  Similarity=0.021  Sum_probs=94.1

Q ss_pred             ceEEEEEcCCCCCCEEEEEeCCCcEEEEECCC-cee--EEEEc--CCCCCeeEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q 048118          127 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN-CKL--RATLA--GHTGYVNTVAVSPDGSLCASGG-KDGVILLWDLAE  200 (303)
Q Consensus       127 ~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~-~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~  200 (303)
                      .+.++.|+|++. ..+++......|.+|+... +..  .....  ........+.|+|+++++.+.. .+++|.+|++..
T Consensus       146 h~h~v~~sPdG~-~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCC-EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            367899999873 2344444456788887543 222  12221  2234578899999999875554 689999999865


Q ss_pred             Cce--EEE---ec---------------CCCeEEEEEEcCCCeEEEEEc--CC-----cEEEEeCCCCceeeeeeecccc
Q 048118          201 GKR--LYS---LD---------------AGAVIHALCFSPNRYWLCAAT--EQ-----SIKIWDLESKSIVEDLKVDLKT  253 (303)
Q Consensus       201 ~~~--~~~---~~---------------~~~~v~~~~~s~~~~~l~~~~--~~-----~i~iwd~~~~~~~~~~~~~~~~  253 (303)
                      ++.  +..   ..               .......+.++|++.+|.++.  +.     .|..|++.....+........ 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-  303 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-  303 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE-
Confidence            532  111   11               012356789999998776653  22     377777654322221110000 


Q ss_pred             ccccccCccceeeccccceeEEEEEEcC-CCCEEEEe-ecCCeEEEEecc
Q 048118          254 EAEKSEATTATTTIKKKNIYCTSLNWSV-DGSTLFSG-YTDGVIRVWGIG  301 (303)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~g-s~Dg~v~~w~~~  301 (303)
                                   ..........++++| +|++|+++ ..++.|.+|+++
T Consensus       304 -------------~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         304 -------------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             -------------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             -------------EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence                         000111234578898 78977655 678999999875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=1.6e-06  Score=67.70  Aligned_cols=234  Identities=7%  Similarity=-0.025  Sum_probs=134.7

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      -..|++++++.-+++..+..+.+..++........                  +...     -......+++++++.+++
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~------------------~~~~-----~~~~p~gvav~~~g~i~v   72 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV------------------LPFN-----GLYQPQGLAVDGAGTVYV   72 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEE------------------CCCC-----SCCSCCCEEECTTCCEEE
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE------------------eccC-----CccCceEEEEcCCCCEEE
Confidence            46888887754344444556667666543221100                  0000     011245688899998877


Q ss_pred             EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCCCCCeeEEEE
Q 048118           98 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAV  177 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  177 (303)
                      +....+.+++++..... . .... .......++++++++  ..+++-..+..+..++...................+++
T Consensus        73 ~d~~~~~i~~~~~~~~~-~-~~~~-~~~~~p~~iavd~~g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  147 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQ-T-VLPF-DGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  147 (260)
T ss_dssp             EETTTEEEEECTTCSCC-E-ECCC-CSCCSEEEEEECTTC--CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE
T ss_pred             eeeeeceeeeeeeccce-e-eeee-eeeeecccccccccc--eeEeeccccccccccccccceeeeeeecccCCcceeee
Confidence            76666666665433221 1 1111 112345788888865  34454445555666665443322211122345578999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCceEEE-ecCCCeEEEEEEcCCCeEEEEEc-CCcEEEEeCCCCceeeeeeecccccc
Q 048118          178 SPDGSLCASGGKDGVILLWDLAEGKRLYS-LDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLKTEA  255 (303)
Q Consensus       178 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~  255 (303)
                      +|+++.+++...++.|..+|......... .........+++.+++.++++.. .+.|..++...... ....       
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~-------  219 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP-------  219 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC-------
T ss_pred             cCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc-------
Confidence            99999888888889999999875543322 12234567899998887665554 56788787644321 1000       


Q ss_pred             ccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEe
Q 048118          256 EKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWG  299 (303)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~  299 (303)
                                  .........|++.++|.++++-..+++|+.++
T Consensus       220 ------------~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         220 ------------FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             ------------CCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ------------cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence                        00112346799999998888877788887664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=8.7e-07  Score=70.93  Aligned_cols=193  Identities=13%  Similarity=0.075  Sum_probs=127.3

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee-E
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL-R  162 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~-~  162 (303)
                      +..+++.|+|+++++...++.|..++..+..... .   .....+.+++|++++  ..+++...++.+..++...... .
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~-~---~~~~~~~gla~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH-A---TVEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE-E---ECSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEE-E---cCCCCcceEEEcCCC--CeEEEecCCceEEEEEecccccce
Confidence            5678999999999999989998888876543222 1   123457899999986  4677777778888777643221 1


Q ss_pred             EEE--cCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec-----------CCCeEEEEEEcCCCeEEEEEc
Q 048118          163 ATL--AGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-----------AGAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       163 ~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~  229 (303)
                      ..+  .........+.+.++++++++.+.++.+..+|...+.......           .......+.++.+..+++...
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence            122  1234567889999999998888889999999987765322111           112456677776555666667


Q ss_pred             CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          230 EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       230 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .+.|+.++..............                  .......+++.++|.+.++...++.|..++.
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~------------------~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIFV------------------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEE------------------ESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             CCeEEecccccccccccccccc------------------CCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence            8889888876543322211100                  0011234788889888888778888887754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=9.5e-06  Score=63.86  Aligned_cols=240  Identities=15%  Similarity=0.199  Sum_probs=145.6

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCC-EE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNR-QI   96 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~l   96 (303)
                      ...|++++++ +++++-.....|++|+....      ....+.            ..+.-.+.......+++..+.. .+
T Consensus        25 P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~------~~~~~~------------~~~~~~~~~~~p~~~~~~~~~~~~~   85 (279)
T d1q7fa_          25 PSGVAVNAQN-DIIVADTNNHRIQIFDKEGR------FKFQFG------------ECGKRDSQLLYPNRVAVVRNSGDII   85 (279)
T ss_dssp             EEEEEECTTC-CEEEEEGGGTEEEEECTTSC------EEEEEC------------CBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             ccEEEEcCCC-CEEEEECCCCEEEEEeCCCC------EEEEec------------ccCCCcccccccccccccccccccc
Confidence            5678888764 57777677778888875311      111110            0000001112344555555433 33


Q ss_pred             EE-EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEE--cCCCCCee
Q 048118           97 VS-ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATL--AGHTGYVN  173 (303)
Q Consensus        97 ~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~  173 (303)
                      ++ .+.++.|.+++..+.......  .........++..+++  ..+++....+.+.+++.. ++....+  ..+.....
T Consensus        86 ~~~~~~~~~i~~~~~~g~~~~~~~--~~~~~~p~~~avd~~G--~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          86 VTERSPTHQIQIYNQYGQFVRKFG--ATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             EEECGGGCEEEEECTTSCEEEEEC--TTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             eeccCCccccccccccccceeecC--CCcccccceeccccCC--cEEEEeeccceeeEeccC-Cceeecccccccccccc
Confidence            32 334556777776554333221  1223345678887765  355555566778888754 4445554  33456778


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecC---CCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeee
Q 048118          174 TVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA---GAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLK  248 (303)
Q Consensus       174 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~  248 (303)
                      .+++.++++.+++....+.|+++|.. ++.+.++..   ......+++.+++.++++..  +..|.+|+. +++++..+.
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            89999999888888889999999964 566666642   23577899999998766643  346999985 466655443


Q ss_pred             eccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEeccc
Q 048118          249 VDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR  302 (303)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~~  302 (303)
                      ...                  .......++..|+|.+ ++++.+++|++|..+.
T Consensus       239 ~~~------------------~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         239 SKV------------------KHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ESS------------------CCSCEEEEEEETTTEE-EEEETTTEEEEEECSC
T ss_pred             CCC------------------CCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeee
Confidence            211                  1123467888999864 5566899999998653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=2e-06  Score=67.13  Aligned_cols=202  Identities=14%  Similarity=0.099  Sum_probs=108.4

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      +.+.+..-+|+|++..+..+...++.-.+|........              .        .++..+.+......|+|+|
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--------------~--------~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------------V--------RQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------------E--------EEEECCSSCEEEEEECTTS
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--------------e--------eEEeeeecccccceecCCC
Confidence            44556677899987654444444444444443221110              0        0123355667788999999


Q ss_pred             CEEEEEeCC-CcEEEE--ecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCc--EEEEECCCceeEEEEcCC
Q 048118           94 RQIVSASRD-RTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRT--VKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        94 ~~l~t~~~d-~~i~vw--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~--i~iwd~~~~~~~~~~~~~  168 (303)
                      +.++..... +...++  ..........  . ..........+++.. ...+++...++.  |...++..... ..+...
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~  169 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQV--T-DGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWE  169 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEEC--C-CCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCS
T ss_pred             CeeeEeeecCCccceeecccccccceee--e-ecccccccccccccc-ccceecccccCCceEeeeecccccc-eeeecc
Confidence            987765543 222222  2211111111  1 111222334455554 234555555555  44445544433 333444


Q ss_pred             CCCeeEEEECCCCCEEEEEeCC-C--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc----CCcEEEEeCCCC
Q 048118          169 TGYVNTVAVSPDGSLCASGGKD-G--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT----EQSIKIWDLESK  241 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~  241 (303)
                      ........|+|+++.++..+.+ +  .+.+.+...+.. .............|||||..|+..+    ...|+++++..+
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            5667778999999988776654 3  444455554443 2333344556778999998775443    346899999776


Q ss_pred             ce
Q 048118          242 SI  243 (303)
Q Consensus       242 ~~  243 (303)
                      ..
T Consensus       249 ~~  250 (269)
T d2hqsa1         249 FK  250 (269)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.76  E-value=6.6e-06  Score=65.63  Aligned_cols=226  Identities=11%  Similarity=0.052  Sum_probs=133.2

Q ss_pred             eeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEE
Q 048118           18 VTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIV   97 (303)
Q Consensus        18 v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~   97 (303)
                      +..+++.|++ ++++|...+++|..|+..  ....                       .+....+.+.+++|+++|.+++
T Consensus        30 ~e~iAv~pdG-~l~vt~~~~~~I~~i~p~--g~~~-----------------------~~~~~~~~~~gla~~~dG~l~v   83 (302)
T d2p4oa1          30 LENLASAPDG-TIFVTNHEVGEIVSITPD--GNQQ-----------------------IHATVEGKVSGLAFTSNGDLVA   83 (302)
T ss_dssp             EEEEEECTTS-CEEEEETTTTEEEEECTT--CCEE-----------------------EEEECSSEEEEEEECTTSCEEE
T ss_pred             cCCEEECCCC-CEEEEeCCCCEEEEEeCC--CCEE-----------------------EEEcCCCCcceEEEcCCCCeEE
Confidence            5678889875 688998888887766532  1110                       0112345678999999999988


Q ss_pred             EEeCCCcEEEEecCCc--eeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcC--------
Q 048118           98 SASRDRTIKLWNTLGE--CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAG--------  167 (303)
Q Consensus        98 t~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~--------  167 (303)
                      +...++.+..++....  ....+.. .........+.+.+++  .++++-+.++.+..++...+........        
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~n~i~~~~~g--~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  160 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDGTVETLLT-LPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNS  160 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEE-CTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred             EecCCceEEEEEecccccceeeccc-cCCccccceeEEccCC--CEEeeccccccceeeeccCCcceeEecCCccceeec
Confidence            8888888877765321  1111111 1233446788888875  4566667788888888876653322211        


Q ss_pred             C--CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEE---EecCCCeEEEEEEcCCCeEEEE-EcCCcEEEEeCCCC
Q 048118          168 H--TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY---SLDAGAVIHALCFSPNRYWLCA-ATEQSIKIWDLESK  241 (303)
Q Consensus       168 ~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~  241 (303)
                      +  ......+.+.. +.++.+.+..+.|..++........   .+........+++.++|.+.++ ..+++|..++...+
T Consensus       161 ~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         161 ESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             cCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            1  12344555543 2344566678888888876543221   1111223446889998865444 45788998887543


Q ss_pred             ceeeeeeeccccccccccCccceeeccccceeEEEEEE---cCCCCEEEEeecC
Q 048118          242 SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNW---SVDGSTLFSGYTD  292 (303)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~~~l~~gs~D  292 (303)
                      .. .....                  .......++++|   +||++.|.+++..
T Consensus       240 ~~-~~~~~------------------~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         240 TT-IIAQA------------------EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EE-EEECG------------------GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EE-EEEec------------------CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            21 11110                  011122467889   6788887766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.75  E-value=2.1e-05  Score=63.06  Aligned_cols=195  Identities=8%  Similarity=0.060  Sum_probs=115.7

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeec-CCCC-ccceEEEEEcCCCCCCEEEEEeC-------------
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQE-GDAH-TEWVSCVRFSPNTLQPTIVSASW-------------  147 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~-~~~i~~~~~~~~~~~~~~~~~~~-------------  147 (303)
                      ....+.|.+++.+++++...+.+...+..+........ .+.. -...+.+.+.+++  ...++-..             
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G--~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC--CEEEecCccCcccccccceec
Confidence            45789999999888878777778888876543221111 1111 1124567888875  23343211             


Q ss_pred             --CCcEEEEECCCceeEEEEcCCCCCeeEEEECCCCC-----EEEEEeCCCeEEEEeCCCCceEE------EecC--CCe
Q 048118          148 --DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGS-----LCASGGKDGVILLWDLAEGKRLY------SLDA--GAV  212 (303)
Q Consensus       148 --dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~v~iwd~~~~~~~~------~~~~--~~~  212 (303)
                        .|.|..++.. ++..... .....-+.++|+|++.     ++++-+..+.|..+|+.....+.      .+..  ...
T Consensus       150 ~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         150 EKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             cCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc
Confidence              2334444432 3322222 2223446788988764     44555678899999876432221      2221  123


Q ss_pred             EEEEEEcCCCeEE-EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCC-EEEEee
Q 048118          213 IHALCFSPNRYWL-CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGS-TLFSGY  290 (303)
Q Consensus       213 v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~gs  290 (303)
                      .-.+++.++|.+. +....+.|.+||.+.++.+..+...                    ....++++|.|+++ ++++.+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p--------------------~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--------------------FEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS--------------------SSCEEEEEECTTSSEEEEEET
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC--------------------CCCEEEEEEeCCCCEEEEEEC
Confidence            4578898888654 4446788999998877654433321                    12346799999987 456677


Q ss_pred             cCCeEEEEecc
Q 048118          291 TDGVIRVWGIG  301 (303)
Q Consensus       291 ~Dg~v~~w~~~  301 (303)
                      .+|+|..+++.
T Consensus       288 ~~g~i~~~~~~  298 (314)
T d1pjxa_         288 ENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEEECS
T ss_pred             CCCcEEEEECC
Confidence            88999887764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=3.6e-05  Score=60.39  Aligned_cols=197  Identities=13%  Similarity=0.202  Sum_probs=119.7

Q ss_pred             CEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC---CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           83 DVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG---DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      ....++++++++++++-...+.|++|+..+.....+...   .........+.+.++.....++..+.++.|..++.. +
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-c
Confidence            467899999999888877788999999876544333111   111122344555554322222333455677777764 4


Q ss_pred             eeEEEEc-CCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEec---CCCeEEEEEEcCCCeEEEEE-cCCcEE
Q 048118          160 KLRATLA-GHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD---AGAVIHALCFSPNRYWLCAA-TEQSIK  234 (303)
Q Consensus       160 ~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~-~~~~i~  234 (303)
                      +....+. ........+++.++++++++....+.+.+++.. ++.+.++.   .......+++.+++.++++. ..+.|+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence            4444443 234566789999999988887778888888854 55555552   23457778898888766554 467899


Q ss_pred             EEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee-cCCeEEEEec
Q 048118          235 IWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY-TDGVIRVWGI  300 (303)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs-~Dg~v~~w~~  300 (303)
                      +||... +.+..+..                  .+.......+++.|+|..+++-+ .+++|.+|+.
T Consensus       182 ~~d~~G-~~~~~~g~------------------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         182 VFNYEG-QYLRQIGG------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEETTC-CEEEEESC------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             eeecCC-ceeeeecc------------------cccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            999754 33332210                  01112235567777777555533 3445766653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=4.6e-05  Score=59.06  Aligned_cols=194  Identities=11%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             ccCCEEEEEEeeCCCEEEEEeCCC---cEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEEC
Q 048118           80 HTKDVLSVAFSIDNRQIVSASRDR---TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL  156 (303)
Q Consensus        80 h~~~i~~i~~~~~~~~l~t~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~  156 (303)
                      +...+..-+|+|||+.||-.....   .+.+.+..+.......   .+........|+|++.. .+.....++...++..
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~-i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVM  112 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---CCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe---eeecccccceecCCCCe-eeEeeecCCccceeec
Confidence            445667789999999988665433   2444444433222222   23445677889998743 3333334444333322


Q ss_pred             --CCceeEEEEcCCCCCeeEEEECCCCCEEE-EEeCCC--eEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--
Q 048118          157 --SNCKLRATLAGHTGYVNTVAVSPDGSLCA-SGGKDG--VILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--  229 (303)
Q Consensus       157 --~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  229 (303)
                        ..... ..............++++++.+. +...++  .+...++..+................|+|++..++...  
T Consensus       113 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  191 (269)
T d2hqsa1         113 DLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN  191 (269)
T ss_dssp             ETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred             ccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeec
Confidence              22222 22223334445567778777554 444455  45555665554433334455677788999987665543  


Q ss_pred             CC--cEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec-C--CeEEEEec
Q 048118          230 EQ--SIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT-D--GVIRVWGI  300 (303)
Q Consensus       230 ~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~-D--g~v~~w~~  300 (303)
                      .+  .|.+.+...+.... +.                     .........|||||+.|+-.+. .  ..+.++++
T Consensus       192 ~~~~~i~~~~~~~~~~~~-~~---------------------~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         192 GGQQHIAKQDLATGGVQV-LS---------------------STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             SSCEEEEEEETTTCCEEE-CC---------------------CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             CCceeeeEeecccccceE-ee---------------------cCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            23  35555554433210 00                     0111234679999998764443 2  35566665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.59  E-value=9.1e-05  Score=60.49  Aligned_cols=120  Identities=10%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             CCeeEEEECCCCCEEEEEeC-CCeEEEEeCCCC-ceE--EE---ecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCC
Q 048118          170 GYVNTVAVSPDGSLCASGGK-DGVILLWDLAEG-KRL--YS---LDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLES  240 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~-~~~--~~---~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~  240 (303)
                      ..+.++.|+|+|++++++.. ...|.+|+.... ...  ..   ...+...+.++|+|++.++.+.  .++.|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34789999999998877764 457888876532 221  11   2335678889999999766544  368899999876


Q ss_pred             CceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEee
Q 048118          241 KSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGY  290 (303)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs  290 (303)
                      ++............... ..................+.++|+|++|+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPP-GIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TTCCEEEEEEEEESSCT-TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEeeeeccccc-cccccccccccccCCccceEECCCCCEEEEEc
Confidence            64432221110000000 00000001112233456789999999988764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.42  E-value=0.00023  Score=56.89  Aligned_cols=231  Identities=10%  Similarity=0.071  Sum_probs=126.0

Q ss_pred             eeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEE
Q 048118           19 TAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVS   98 (303)
Q Consensus        19 ~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t   98 (303)
                      ..++|++++ ++.++-...+.|..|+.......                ..       ..........++++++|.++++
T Consensus        43 EG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~----------------~~-------~~~~~~~p~gla~~~dG~l~va   98 (319)
T d2dg1a1          43 EGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK----------------RP-------FVSHKANPAAIKIHKDGRLFVC   98 (319)
T ss_dssp             EEEEECTTS-CEEEEETTTCEEEEECTTTCCEE----------------EE-------EECSSSSEEEEEECTTSCEEEE
T ss_pred             EeCEECCCC-CEEEEECCCCEEEEEECCCCeEE----------------EE-------EeCCCCCeeEEEECCCCCEEEE
Confidence            466777664 56666666676666654321100                00       1122345678999999987776


Q ss_pred             EeCC----CcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC------CCcEEEEECCCceeEEEEcCC
Q 048118           99 ASRD----RTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW------DRTVKVWNLSNCKLRATLAGH  168 (303)
Q Consensus        99 ~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------dg~i~iwd~~~~~~~~~~~~~  168 (303)
                      ...+    +.+...+.....................+++.+++  ...++-..      .+.+..++....... .+...
T Consensus        99 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G--~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~  175 (319)
T d2dg1a1          99 YLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN  175 (319)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE
T ss_pred             ecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc--ceeecccccccccCcceeEEEecccceeE-EEeec
Confidence            5432    22333343332222222111112335678888876  23333211      123555554433322 22222


Q ss_pred             CCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCCC-ceEE--------EecCCCeEEEEEEcCCCeE-EEEEcCCcEEEEe
Q 048118          169 TGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAEG-KRLY--------SLDAGAVIHALCFSPNRYW-LCAATEQSIKIWD  237 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~-~~~~--------~~~~~~~v~~~~~s~~~~~-l~~~~~~~i~iwd  237 (303)
                      -...+.++|+|+++.| ++-+..++|..+++... ....        ..........+++.++|.+ ++....+.|.+||
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            2345789999999866 55566889999987532 1111        1111233556899888864 4555688999999


Q ss_pred             CCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeec
Q 048118          238 LESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYT  291 (303)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~  291 (303)
                      - .++++..+.+.....              ......++++|.|....+++...
T Consensus       256 p-~G~~l~~i~~P~~~~--------------~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDE--------------GHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             T-TSCEEEEEECTTGGG--------------TCSCBCCEEEECTTSCEEEEEEE
T ss_pred             C-CCcEEEEEeCCCcCC--------------CcCceeeeEEEeCCCCEEEEEcC
Confidence            5 677777666532211              11223356788887776665443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=7.2e-05  Score=57.97  Aligned_cols=153  Identities=7%  Similarity=-0.037  Sum_probs=96.4

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCcee
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKL  161 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~  161 (303)
                      ..+..+++.+++.++++-.....+..++..+........  ........++++|++  ..+++...++.|..+|......
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g--~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--TGLNDPDGVAVDNSG--NVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC--CSCCSCCEEEECTTC--CEEEEEGGGTEEEEECTTTCCE
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeee--cccCCcceeeecCCC--CEeeecccccccccccccccee
Confidence            356789999998877766666667777654432222111  112234678888875  3566667778899999765543


Q ss_pred             EEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE-EEecCCCeEEEEEEcCCCeEEEEE-cCCcEEEEeC
Q 048118          162 RATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL-YSLDAGAVIHALCFSPNRYWLCAA-TEQSIKIWDL  238 (303)
Q Consensus       162 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~  238 (303)
                      .............+++.++|+++++....++|..++....... .....-.....+++++++.++++. .+++|..++.
T Consensus       174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            3322234456788999999998888888889988876543221 111222456788998887655443 4556665554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.29  E-value=0.00048  Score=54.93  Aligned_cols=200  Identities=10%  Similarity=0.030  Sum_probs=112.7

Q ss_pred             EEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC----CCcEEEEECCCc
Q 048118           84 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW----DRTVKVWNLSNC  159 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----dg~i~iwd~~~~  159 (303)
                      +..++|.++|.+.++-...+.|..|+..+........  ........+++++++  ..+++...    .+.+...+....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--~~~~~p~gla~~~dG--~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDG--RLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTS--CEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe--CCCCCeeEEEECCCC--CEEEEecCCCccceeEEEEcCCCc
Confidence            4578999999877777788888888876543222211  122346789999986  34444322    234555555554


Q ss_pred             eeEEEEcCC--CCCeeEEEECCCCCEEEEEeC------CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEE--EEEc
Q 048118          160 KLRATLAGH--TGYVNTVAVSPDGSLCASGGK------DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWL--CAAT  229 (303)
Q Consensus       160 ~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~  229 (303)
                      .........  ......+++.|+|++.++...      .+.+..++...+........-...+.++|+|++..|  +-..
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            443333221  235678999999987766432      123555554433221111222345679999998544  3345


Q ss_pred             CCcEEEEeCCCC-ceeeeeeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEeecCCeEEEEec
Q 048118          230 EQSIKIWDLESK-SIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI  300 (303)
Q Consensus       230 ~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~  300 (303)
                      .++|+.|+++.. ...........             ...........+++.++|++.++....|.|.+|+-
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~-------------~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIP-------------YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEE-------------EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CCceEEEEEcCCCceeccccceee-------------eccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            789999987642 21111110000             00000112345777888887777778888888864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.23  E-value=0.00032  Score=55.83  Aligned_cols=200  Identities=13%  Similarity=0.083  Sum_probs=107.6

Q ss_pred             EEEEEEeeCCCEEEEEeC-------CCcEEEEecCCceeeeeecC--CCCccceEEEEEcCCCCCCEEEEEeCCCcEEEE
Q 048118           84 VLSVAFSIDNRQIVSASR-------DRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVW  154 (303)
Q Consensus        84 i~~i~~~~~~~~l~t~~~-------d~~i~vw~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iw  154 (303)
                      .-.++|.++|.+.++...       ++.|..|+..+.........  .........+.|.+++  ..++++.....+..+
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg--~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEEETTTEEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC--CEEEEEECCCeEEEE
Confidence            345788899887665432       35677777654432222111  1111224678999875  356666666678888


Q ss_pred             ECCCceeEEEEcCCC----CCeeEEEECCCCCEEEEEeC---------------CCeEEEEeCCCCceEEEecCCCeEEE
Q 048118          155 NLSNCKLRATLAGHT----GYVNTVAVSPDGSLCASGGK---------------DGVILLWDLAEGKRLYSLDAGAVIHA  215 (303)
Q Consensus       155 d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------d~~v~iwd~~~~~~~~~~~~~~~v~~  215 (303)
                      |..............    ...+.+++.|+|++.++-..               +|.|..++.. ++.......-...+.
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG  176 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG  176 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence            876543221111111    13577999999988776432               2344444432 222221111223456


Q ss_pred             EEEcCCCe----EE--EEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccc-cceeEEEEEEcCCCCEEEE
Q 048118          216 LCFSPNRY----WL--CAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKK-KNIYCTSLNWSVDGSTLFS  288 (303)
Q Consensus       216 ~~~s~~~~----~l--~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~  288 (303)
                      ++|+|++.    .|  +-+..+.|+.||+.....+...++...              +.. .......+++..+|++.++
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~--------------~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH--------------IPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE--------------CCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEE--------------ccccccccceeeEEecCCcEEEE
Confidence            78887641    23  233567888888754433322211100              000 0112345778888887777


Q ss_pred             eecCCeEEEEec
Q 048118          289 GYTDGVIRVWGI  300 (303)
Q Consensus       289 gs~Dg~v~~w~~  300 (303)
                      ....+.|.+||.
T Consensus       243 ~~~~g~I~~~dp  254 (314)
T d1pjxa_         243 NWGSSHIEVFGP  254 (314)
T ss_dssp             EETTTEEEEECT
T ss_pred             EcCCCEEEEEeC
Confidence            777888888874

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=0.00018  Score=60.71  Aligned_cols=200  Identities=10%  Similarity=0.107  Sum_probs=109.6

Q ss_pred             eecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCCCEEEEEe
Q 048118           21 IATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDNRQIVSAS  100 (303)
Q Consensus        21 v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~~~l~t~~  100 (303)
                      ..|.+++ .++ --..||.|.+|+........                 .+.. ..+  ..-.+....|+||+++++...
T Consensus        22 ~~W~~~~-~~~-~~~~~g~i~~~~~~~~~~~~-----------------l~~~-~~~--~~~~~~~~~~SpD~~~vl~~~   79 (465)
T d1xfda1          22 AKWISDT-EFI-YREQKGTVRLWNVETNTSTV-----------------LIEG-KKI--ESLRAIRYEISPDREYALFSY   79 (465)
T ss_dssp             CCBSSSS-CBC-CCCSSSCEEEBCGGGCCCEE-----------------EECT-TTT--TTTTCSEEEECTTSSEEEEEE
T ss_pred             CEEeCCC-cEE-EEeCCCcEEEEECCCCCEEE-----------------EEcC-ccc--cccccceeEECCCCCeEEEEE
Confidence            4677654 444 34567889999887543211                 0100 011  122445667899998877654


Q ss_pred             C---------CCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEc-CCCC
Q 048118          101 R---------DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLA-GHTG  170 (303)
Q Consensus       101 ~---------d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~  170 (303)
                      .         .+.+.++|+.......+.........+....|+|++..  ++.. .++.|.+.+..++...+... +..+
T Consensus        80 ~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~--iafv-~~~nl~~~~~~~~~~~~lt~~g~~~  156 (465)
T d1xfda1          80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQ--LIFI-FENNIYYCAHVGKQAIRVVSTGKEG  156 (465)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTC--EEEE-ETTEEEEESSSSSCCEEEECCCBTT
T ss_pred             cccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCce--EEEE-ecceEEEEecCCCceEEEecccCcc
Confidence            3         35667778755433333222222334555789999854  3332 35678888776554333221 2111


Q ss_pred             C-----------------eeEEEECCCCCEEEEEeC-CCeEE---------------------------------EEeCC
Q 048118          171 Y-----------------VNTVAVSPDGSLCASGGK-DGVIL---------------------------------LWDLA  199 (303)
Q Consensus       171 ~-----------------i~~~~~~~~~~~l~~~~~-d~~v~---------------------------------iwd~~  199 (303)
                      .                 -..+.|||||++||.... +..|.                                 ++|+.
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~  236 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence            1                 246789999999987653 33333                                 33333


Q ss_pred             CCceEEEe-c------CCCeEEEEEEcCCCeEEEEEcC-----CcEEEEeCCCCceee
Q 048118          200 EGKRLYSL-D------AGAVIHALCFSPNRYWLCAATE-----QSIKIWDLESKSIVE  245 (303)
Q Consensus       200 ~~~~~~~~-~------~~~~v~~~~~s~~~~~l~~~~~-----~~i~iwd~~~~~~~~  245 (303)
                      ++...... .      ....+..+.|+|++.+++...+     ..|.++|..+++...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence            22211110 0      0123677889999876655432     248888988876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.6e-06  Score=69.07  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             EEcCCCCCCEEEEEeCCCcEEEEECCCceeEEEEcCC---CCCeeEEEECCCCCEEEEEe---------CCCeEEEEeCC
Q 048118          132 RFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGH---TGYVNTVAVSPDGSLCASGG---------KDGVILLWDLA  199 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~---------~d~~v~iwd~~  199 (303)
                      .|.+++.   ++.-..+|.|.+||+.+++....+...   .-.+....+|||+++++...         ..+.+.++|+.
T Consensus        23 ~W~~~~~---~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          23 KWISDTE---FIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CBSSSSC---BCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EEeCCCc---EEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            4666542   334466788999999877654434332   23567888999999887763         35678899998


Q ss_pred             CCceEEE--ec-CCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEE
Q 048118          200 EGKRLYS--LD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTS  276 (303)
Q Consensus       200 ~~~~~~~--~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (303)
                      +++...-  .. ....+....|||+|..+|...++.|++.+..++..+....-. ...............-.... .-.+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g-~~~~i~nG~~d~vyeee~~~-~~~a  177 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILK-THIA  177 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSS-SSEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEeccc-Ccceeeccccchhhhhhhcc-ccce
Confidence            8764321  11 123455578999999999889999999998776554322110 00000000000000000000 0145


Q ss_pred             EEEcCCCCEEEEee-cCCeEEEEec
Q 048118          277 LNWSVDGSTLFSGY-TDGVIRVWGI  300 (303)
Q Consensus       277 ~~~sp~~~~l~~gs-~Dg~v~~w~~  300 (303)
                      +.|||||++||... .+..|..+.+
T Consensus       178 ~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         178 HWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             EEECCCCCeEEEEEecccccceeec
Confidence            78999999998765 3455555544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.72  E-value=0.0052  Score=46.99  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=17.8

Q ss_pred             EEcCCCCEEEEeecCCeEEEEecc
Q 048118          278 NWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       278 ~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      .|+|||+.|+- ..+|.|.++|+.
T Consensus       239 ~~SpDG~~I~f-~~~~~l~~~d~~  261 (281)
T d1k32a2         239 HLNTDGRRILF-SKGGSIYIFNPD  261 (281)
T ss_dssp             EEEESSSCEEE-EETTEEEEECTT
T ss_pred             cCcCCCCEEEE-EeCCEEEEEECC
Confidence            58999998775 457889888874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.41  E-value=0.017  Score=45.00  Aligned_cols=146  Identities=14%  Similarity=0.069  Sum_probs=86.7

Q ss_pred             EEEEeeCC-CEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCceeEEE
Q 048118           86 SVAFSIDN-RQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRAT  164 (303)
Q Consensus        86 ~i~~~~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~  164 (303)
                      +-.|++.. .+..+=-..+.|.-||..+........    ...+.++.+.+++   .++.++.+ -+..+|..+++....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~----~~~~~~i~~~~dg---~l~va~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHAL----PFMGSALAKISDS---KQLIASDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC----SSCEEEEEEEETT---EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC----CCCcEEEEEecCC---CEEEEEeC-ccEEeecccceeeEE
Confidence            34577643 444443456778888876543332221    2346778877664   45555655 588899988775433


Q ss_pred             EcC----CCCCeeEEEECCCCCEEEEEeC----CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE--EcCCcEE
Q 048118          165 LAG----HTGYVNTVAVSPDGSLCASGGK----DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA--ATEQSIK  234 (303)
Q Consensus       165 ~~~----~~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~i~  234 (303)
                      ...    ....++.+.+.|+|++.++...    .+.-.+|.+..++.......-...+.++|++++..+..  +..+.|+
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceee
Confidence            221    1235788999999997765432    23445566655544333332334677899999864433  3467899


Q ss_pred             EEeCC
Q 048118          235 IWDLE  239 (303)
Q Consensus       235 iwd~~  239 (303)
                      .|++.
T Consensus       174 ~~~~d  178 (295)
T d2ghsa1         174 RVPLD  178 (295)
T ss_dssp             EEEBC
T ss_pred             Eeeec
Confidence            88875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.26  E-value=0.0024  Score=48.96  Aligned_cols=99  Identities=15%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEc--C-----CcEEEEeCCCCceeee
Q 048118          176 AVSPD--GSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT--E-----QSIKIWDLESKSIVED  246 (303)
Q Consensus       176 ~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-----~~i~iwd~~~~~~~~~  246 (303)
                      .++|+  |+.++..+ ++.|.+.|+.+++...-..........+|||||..|+...  +     ..|++++..+++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            45788  98887664 5678888999887654334556788899999998777542  2     2488888877765431


Q ss_pred             eeeccccccccccCccceeeccccceeEEEEEEcCCCCEEEEe
Q 048118          247 LKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWSVDGSTLFSG  289 (303)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~g  289 (303)
                      .... .             .............|+|+|+.|+..
T Consensus        84 t~~~-~-------------~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFS-G-------------KSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCC-E-------------EEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecC-C-------------CccCccccccccccCCCCCEEEEE
Confidence            1100 0             000011223457799999987754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.18  E-value=0.032  Score=43.36  Aligned_cols=181  Identities=15%  Similarity=0.111  Sum_probs=107.8

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC--CCCccceEEEEEcCCCCCCEEEEEeC----CCcEEEEE
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG--DAHTEWVSCVRFSPNTLQPTIVSASW----DRTVKVWN  155 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~----dg~i~iwd  155 (303)
                      ..+.++++.+++.++++ +.+ .+.++|..+.....+...  ......+..+.+.|++  ...++...    .+.-.+|.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G--~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC--CEEEEeccccccccceeEee
Confidence            45678888888877765 444 477888765433322211  1122346788888876  23333221    23445566


Q ss_pred             CCCceeEEEEcCCCCCeeEEEECCCCCEE-EEEeCCCeEEEEeCCCC------ce-EE-Ee-cCCCeEEEEEEcCCCeE-
Q 048118          156 LSNCKLRATLAGHTGYVNTVAVSPDGSLC-ASGGKDGVILLWDLAEG------KR-LY-SL-DAGAVIHALCFSPNRYW-  224 (303)
Q Consensus       156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~------~~-~~-~~-~~~~~v~~~~~s~~~~~-  224 (303)
                      +.+++....... -..-+.++|+++++.+ ++-+..+.|..+++...      +. +. .. ........+++..+|.+ 
T Consensus       135 ~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         135 VAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             EETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             ecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            656655444332 2345789999999865 45556889998887421      11 11 11 12345778889888764 


Q ss_pred             EEEEcCCcEEEEeCCCCceeeeeeeccccccccccCccceeeccccceeEEEEEEc-CCCCEEEE
Q 048118          225 LCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKKKNIYCTSLNWS-VDGSTLFS  288 (303)
Q Consensus       225 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~  288 (303)
                      ++.-..+.|..||- .++++..+.++.                    ..+++++|- |+.+.|.+
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~lP~--------------------~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEVPG--------------------KQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECSC--------------------SBEEEEEEESTTSCEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEecCCC--------------------CceEEEEEeCCCCCEEEE
Confidence            44446788999995 577776665431                    124678885 67665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.02  E-value=0.059  Score=43.72  Aligned_cols=199  Identities=12%  Similarity=0.090  Sum_probs=111.8

Q ss_pred             CCCEEEEE-eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCC------------------cEE
Q 048118           92 DNRQIVSA-SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDR------------------TVK  152 (303)
Q Consensus        92 ~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg------------------~i~  152 (303)
                      ||+++... ..+..|-+-|+.......+... +-...+..++..+.+...+++..+...                  .+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            67775554 4677888888765433222222 223345666665554445666665532                  356


Q ss_pred             EEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCC--------------------------------------CeEE
Q 048118          153 VWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD--------------------------------------GVIL  194 (303)
Q Consensus       153 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------------------~~v~  194 (303)
                      ++|..+.+...++.- .+....+.++|+|+++++.+.+                                      +.+.
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            778888776655443 2345678999999998877643                                      1223


Q ss_pred             EEeCCCC---ceEEEecCCCeEEEEEEcCCCeEEEEEc--CCcEEEEeCCCCceeeeeeeccccccccccCccceeeccc
Q 048118          195 LWDLAEG---KRLYSLDAGAVIHALCFSPNRYWLCAAT--EQSIKIWDLESKSIVEDLKVDLKTEAEKSEATTATTTIKK  269 (303)
Q Consensus       195 iwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (303)
                      +.|.+..   ..+..+......+.+..+|||.++.++.  +..+.++|++.-.....-+.+.....      ...   ..
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~------~~e---~e  326 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV------VAE---PE  326 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE------EEC---CB
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE------Eee---cc
Confidence            3343321   1122232233345678999998877764  78999999863211100000000000      000   00


Q ss_pred             cceeEEEEEEcCCCCEEEEeecCCeEEEEecc
Q 048118          270 KNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIG  301 (303)
Q Consensus       270 ~~~~~~~~~~sp~~~~l~~gs~Dg~v~~w~~~  301 (303)
                      ........+|..+|.-..|-.-|..|.-|++.
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            12233557788888666677789999999974

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.16  Score=38.50  Aligned_cols=205  Identities=13%  Similarity=0.045  Sum_probs=109.9

Q ss_pred             cccceeeeecCCCCCcEEEEecCCCcEEEEEcccCccccceeeeeecCCCcceEEEEeCCCCceecccCCEEEEEEeeCC
Q 048118           14 HTDMVTAIATPIDNSDMIVTASRDKSIIVWHLTKEEKTYGVARRRLTGHSHFVQDVVLSSDGQFVGHTKDVLSVAFSIDN   93 (303)
Q Consensus        14 h~~~v~~v~~~~~~~~~~~t~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~i~~i~~~~~~   93 (303)
                      +...+.++++++.+..++.+-..++.|+..++...+...                + +      ......+.++++..-+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~----------------v-~------~~~~~~p~~iAvD~~~   90 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT----------------I-I------RQDLGSPEGIALDHLG   90 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE----------------E-E------CTTCCCEEEEEEETTT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE----------------E-E------EeccccccEEEEeccC
Confidence            334466677776555455444555666655554221110                0 0      0112356788888655


Q ss_pred             CEEE-EEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeC---CCcEEEEECCCceeEEEEcCCC
Q 048118           94 RQIV-SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASW---DRTVKVWNLSNCKLRATLAGHT  169 (303)
Q Consensus        94 ~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~~~~  169 (303)
                      ..|. +-...+.|.+.++.+.....+...  .......++.+|...  .+.....   ...|...++............-
T Consensus        91 ~~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~p~~l~vdp~~g--~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~  166 (263)
T d1npea_          91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMDGTNRRILAQDNL  166 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTT--EEEEEECCSSSCEEEEEETTSCCCEEEECTTC
T ss_pred             CeEEEeccCCCEEEEEecCCceEEEEecc--cccCCcEEEEecccC--cEEEeecCCCCcEEEEecCCCCCceeeeeecc
Confidence            5554 445567888888765433333221  223467888988652  3333222   2235545665433333232233


Q ss_pred             CCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEEEcCCcEEEEeCCCCceee
Q 048118          170 GYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVE  245 (303)
Q Consensus       170 ~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  245 (303)
                      .....+++.+.++.|..+ ...++|...|+........+........+++..+..+.+-...++|...|..+++...
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCCccce
Confidence            456789998877766544 4678899998865443222222223346666532222233346778888877665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.45  E-value=0.31  Score=41.40  Aligned_cols=58  Identities=12%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             CeEEEEeCCCCceEEEecCCCeEE--EEEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          191 GVILLWDLAEGKRLYSLDAGAVIH--ALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       191 ~~v~iwd~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      |++.-||+.+++.+.+.....+..  .++- ..+.+++...|+.++.||.++++.+.+.++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            357778888888777664322211  1211 345666777899999999999999987765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.26  E-value=0.44  Score=40.55  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=40.5

Q ss_pred             CeEEEEeCCCCceEEEecCCCeEEEEEE-cCCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          191 GVILLWDLAEGKRLYSLDAGAVIHALCF-SPNRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       191 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      |.+.-+|+.+++.+.+.....++..=.. ...+.+++.+.||.++.||.++++++.+.++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            5677888888888777643332221111 1245666667799999999999999987765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.21  E-value=0.2  Score=42.69  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             CeEEEEeCCCCceEEEecCCCeEEE-EEEcCCCeEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118          191 GVILLWDLAEGKRLYSLDAGAVIHA-LCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       191 ~~v~iwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      |.+.-+|+.+++.+.+........+ ..-..++.+++...|+.++.+|.++++++.+.++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence            4677788888887766543221111 11113566777778999999999999999877653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.01  E-value=0.28  Score=41.57  Aligned_cols=59  Identities=8%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             CeEEEEeCCCCceEEEecCCCeEEEEEE-cCCCeEEEEEcCCcEEEEeCCCCceeeeeee
Q 048118          191 GVILLWDLAEGKRLYSLDAGAVIHALCF-SPNRYWLCAATEQSIKIWDLESKSIVEDLKV  249 (303)
Q Consensus       191 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  249 (303)
                      |.+.-+|+.+++.+.+.........=.+ ...+.+++...||.++.||.++++++.+.++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            5678889999988877643322211111 1356666777799999999999999987665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.61  E-value=0.88  Score=36.74  Aligned_cols=89  Identities=10%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             EEEEEeCCCcEEEEECCCceeEEEEcC-CCCCeeEEEECC--CCCEEEEEeCCC------------------eEEEEeCC
Q 048118          141 TIVSASWDRTVKVWNLSNCKLRATLAG-HTGYVNTVAVSP--DGSLCASGGKDG------------------VILLWDLA  199 (303)
Q Consensus       141 ~~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~d~------------------~v~iwd~~  199 (303)
                      .++.-..+..|-+.|+++.++.+.+.. ....+..++..+  +..+++.++++.                  .+.++|..
T Consensus       102 lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~  181 (459)
T d1fwxa2         102 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  181 (459)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETT
T ss_pred             EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecC
Confidence            456666788899999999887653332 234567777654  445777766533                  36678888


Q ss_pred             CCceEEEecCCCeEEEEEEcCCCeEEEEEc
Q 048118          200 EGKRLYSLDAGAVIHALCFSPNRYWLCAAT  229 (303)
Q Consensus       200 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  229 (303)
                      +.+...++........+.++++|.++.+.+
T Consensus       182 tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         182 KWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             TTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             CceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            888777765555556788999998876653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.81  E-value=0.29  Score=39.85  Aligned_cols=55  Identities=16%  Similarity=0.118  Sum_probs=35.2

Q ss_pred             eeEEEECCCCCEEEEEe-C----CCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEE
Q 048118          172 VNTVAVSPDGSLCASGG-K----DGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLC  226 (303)
Q Consensus       172 i~~~~~~~~~~~l~~~~-~----d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  226 (303)
                      +..+++||++++++.+- .    -.++++.|+.+++.+...........++|.+++..+.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEE
Confidence            34567899999887432 2    3489999999998654221111124577888876543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.78  E-value=1.1  Score=36.65  Aligned_cols=53  Identities=15%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceE--EEec-------CCCeEEEEEEcCC
Q 048118          169 TGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLD-------AGAVIHALCFSPN  221 (303)
Q Consensus       169 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-------~~~~v~~~~~s~~  221 (303)
                      -..-++|+|.|++++|++--.+|+|++++..+++..  ..+.       ...-...++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            356679999999998887755799999988776532  2221       1234667899886

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.98  Score=33.88  Aligned_cols=158  Identities=13%  Similarity=0.009  Sum_probs=89.5

Q ss_pred             CEEEEEEeeCCCEEEE-EeCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEE--eCCCcEEEEECCCc
Q 048118           83 DVLSVAFSIDNRQIVS-ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSA--SWDRTVKVWNLSNC  159 (303)
Q Consensus        83 ~i~~i~~~~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~dg~i~iwd~~~~  159 (303)
                      .+..+++...+..|.- -...+.|.+.++.+.........  .......++.+|..  ..+...  +..+.|...++...
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~--~~~~P~~l~vd~~~--g~ly~~~~~~~~~I~r~~~dGs  153 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGV  153 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSC
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC--CCCCcceEEEEccc--CeEEEeccCCCcceeEeccCCC
Confidence            4557888876554444 44567888998876543332221  22346788888854  233332  34456777777544


Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEE-eCCCeEEEEeCCCCceE--EEecC-CCeEEEEEEcCCCeEEEEEcCCcEEE
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASG-GKDGVILLWDLAEGKRL--YSLDA-GAVIHALCFSPNRYWLCAATEQSIKI  235 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~i  235 (303)
                      .........-.....+++.+.++.|..+ ...++|...|+......  ..... ......+++..+..+.+-..++.|+.
T Consensus       154 ~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS  233 (266)
T ss_dssp             CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEE
Confidence            3333333333567889999877766554 56789998898654322  22111 12345566664333323334667777


Q ss_pred             EeCCCCcee
Q 048118          236 WDLESKSIV  244 (303)
Q Consensus       236 wd~~~~~~~  244 (303)
                      .+..+++..
T Consensus       234 ~~~~~g~~~  242 (266)
T d1ijqa1         234 ANRLTGSDV  242 (266)
T ss_dssp             EETTTCCCC
T ss_pred             EECCCCcce
Confidence            776665433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.38  E-value=1.2  Score=34.01  Aligned_cols=86  Identities=7%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             CcEEEEECCCce-eEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEEEEEcCCCeEEEE
Q 048118          149 RTVKVWNLSNCK-LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA  227 (303)
Q Consensus       149 g~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  227 (303)
                      ..+.+.|+.+.. ..+.-    -...+..++|..+.||.-+ ..+++++|+++.++++.+.....|.=-.|-. ...|+.
T Consensus        45 ~~VvIidl~n~~~~~Rrp----i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~l  118 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVAL  118 (327)
T ss_dssp             EEEEEEETTSTTSCEEEE----CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEE
T ss_pred             ceEEEEECCCCCcceecc----cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEE
Confidence            457778886543 22211    1234567899988887766 5689999999999998887655554345543 345677


Q ss_pred             EcCCcEEEEeCCC
Q 048118          228 ATEQSIKIWDLES  240 (303)
Q Consensus       228 ~~~~~i~iwd~~~  240 (303)
                      -++..|+=|+++.
T Consensus       119 VT~taVYHW~~~g  131 (327)
T d1utca2         119 VTDNAVYHWSMEG  131 (327)
T ss_dssp             ECSSEEEEEESSS
T ss_pred             EcCCceEEEcccC
Confidence            7888999999964

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.31  E-value=1.4  Score=34.52  Aligned_cols=92  Identities=12%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             EEEEECCCceeEE--E-EcCCCCCeeEEEECCCCCEEEEEeCC-CeEEEEeCCCCceEEEe--cCCCeEEEEEEcCCCeE
Q 048118          151 VKVWNLSNCKLRA--T-LAGHTGYVNTVAVSPDGSLCASGGKD-GVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYW  224 (303)
Q Consensus       151 i~iwd~~~~~~~~--~-~~~~~~~i~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~  224 (303)
                      +.+||..+++...  . ...+........+.+++++++.|+.+ ..+.+||..+..-...-  ...-.-...+..+++.+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            5678887765321  1 12233334566788999999988754 68999998876543211  11112234566678776


Q ss_pred             EEEEcC-------CcEEEEeCCCCc
Q 048118          225 LCAATE-------QSIKIWDLESKS  242 (303)
Q Consensus       225 l~~~~~-------~~i~iwd~~~~~  242 (303)
                      ++.+..       ..+.+||..+.+
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeeccccccccccceeeeecCCCCc
Confidence            665531       368999987764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.71  E-value=0.22  Score=42.40  Aligned_cols=79  Identities=16%  Similarity=0.290  Sum_probs=51.0

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEE--EEEcCCC-eEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA--LCFSPNR-YWL  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~--~~~s~~~-~~l  225 (303)
                      |.+.-||+.+++.+....... +...=.++-.+.++.+|+.||.++.+|.++|+.+.+++....+..  +.|.-+| +++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            458889999998876655332 211111223567788899999999999999999998865432221  3344455 555


Q ss_pred             EEE
Q 048118          226 CAA  228 (303)
Q Consensus       226 ~~~  228 (303)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.83  E-value=1.8  Score=36.68  Aligned_cols=60  Identities=10%  Similarity=0.154  Sum_probs=39.4

Q ss_pred             CeEEEEeCCCCceEEEecCCCeEEEEEE-cCCCeEEEEEcCCcEEEEeCCCCceeeeeeec
Q 048118          191 GVILLWDLAEGKRLYSLDAGAVIHALCF-SPNRYWLCAATEQSIKIWDLESKSIVEDLKVD  250 (303)
Q Consensus       191 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  250 (303)
                      |.+.-||+.+++.+.+.........=.+ ...+.+++...||.++.||.++++++.+.++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            4677788888887766532222111111 12456666777999999999999999877643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.56  E-value=0.27  Score=41.85  Aligned_cols=79  Identities=18%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEE--EEEEcCCC-eEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH--ALCFSPNR-YWL  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~--~~~~s~~~-~~l  225 (303)
                      |.+.-+|+.+++.+.+...+. ++..-.++..+.++..|+.||.++.+|.++|+.+.+++....+.  -+.|..+| +++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568888998888776665432 22221223456677789999999999999999999886543221  14455565 555


Q ss_pred             EEE
Q 048118          226 CAA  228 (303)
Q Consensus       226 ~~~  228 (303)
                      ++.
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.48  E-value=3.1  Score=32.49  Aligned_cols=144  Identities=15%  Similarity=0.245  Sum_probs=80.2

Q ss_pred             eCCCEEEEEeCCCcEEEEecCCceeeeeecCCCCccceEEEEEc----CCCCCCEEEEEe-C-C--CcEEEEECCC-cee
Q 048118           91 IDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFS----PNTLQPTIVSAS-W-D--RTVKVWNLSN-CKL  161 (303)
Q Consensus        91 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~-~-d--g~i~iwd~~~-~~~  161 (303)
                      |..++++.....+-|.+||+.++.......     ..+..+..-    ..+....++.++ + +  ..|.+|.+.. ...
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~-----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECCS-----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEeccc-----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            455677777777779999997765433321     223333221    111111233333 2 2  3577776642 222


Q ss_pred             EEEEcCC-------CCCeeEEEE--CCC-CC-EEEEEeCCCeEEEEeCC---CC----ceEEEecCCCeEEEEEEcCCCe
Q 048118          162 RATLAGH-------TGYVNTVAV--SPD-GS-LCASGGKDGVILLWDLA---EG----KRLYSLDAGAVIHALCFSPNRY  223 (303)
Q Consensus       162 ~~~~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~v~~~~~s~~~~  223 (303)
                      ...+...       ...+..+++  +|. +. ++++...+|.+..|.+.   .+    +.++++.....+-.|.+.+...
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~  192 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYG  192 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCC
Confidence            2222211       124666666  664 54 45666779999888763   22    3456677777888899988754


Q ss_pred             EE-EEEcCCcEEEEeCC
Q 048118          224 WL-CAATEQSIKIWDLE  239 (303)
Q Consensus       224 ~l-~~~~~~~i~iwd~~  239 (303)
                      .| ++-.+..|+.++.+
T Consensus       193 ~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEEETTTEEEEEESS
T ss_pred             cEEEecCccceEEEEec
Confidence            44 44456667777654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.33  E-value=0.39  Score=41.02  Aligned_cols=78  Identities=14%  Similarity=0.159  Sum_probs=49.0

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEE--EEEEcCCC-eEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIH--ALCFSPNR-YWL  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~--~~~~s~~~-~~l  225 (303)
                      |.|.-||+.+++...+.... .+..+-.++..+.++..|+.||.++.+|.++|+.+.+++....+.  -+.|.-+| +++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            56888898888876544321 222211222346677789999999999999999999886533221  13344454 555


Q ss_pred             EE
Q 048118          226 CA  227 (303)
Q Consensus       226 ~~  227 (303)
                      ++
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.59  E-value=0.77  Score=38.73  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=49.6

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEE--EEEcCCC-eEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA--LCFSPNR-YWL  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~--~~~s~~~-~~l  225 (303)
                      |.+.-+|+.+++.+.++... .+...-.+.-.+.++..|+.||.++.+|.++|+.+.+++....+..  +.|.-+| +++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56788999999877655422 1222112223456777899999999999999999998865432221  3343455 455


Q ss_pred             EE
Q 048118          226 CA  227 (303)
Q Consensus       226 ~~  227 (303)
                      ++
T Consensus       517 ~v  518 (560)
T d1kv9a2         517 AI  518 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.52  E-value=5.1  Score=31.03  Aligned_cols=94  Identities=13%  Similarity=0.162  Sum_probs=52.9

Q ss_pred             CCCcEEEEECCCc--ee--EEEEcCC-CCCeeEEEECCCCCEEEEEe-----------------CCCeEEEEeCCCCceE
Q 048118          147 WDRTVKVWNLSNC--KL--RATLAGH-TGYVNTVAVSPDGSLCASGG-----------------KDGVILLWDLAEGKRL  204 (303)
Q Consensus       147 ~dg~i~iwd~~~~--~~--~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----------------~d~~v~iwd~~~~~~~  204 (303)
                      ....|.+|++...  +.  +..+... ....+++.+..++..++|-.                 ..+.+.-||.  ++..
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~  199 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR  199 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceE
Confidence            4567888876432  22  2233221 23467888888887777731                 1123334443  2221


Q ss_pred             EEecCCCeEEEEEEcCCCeEEEEE--cCCcEEEEeCCCCc
Q 048118          205 YSLDAGAVIHALCFSPNRYWLCAA--TEQSIKIWDLESKS  242 (303)
Q Consensus       205 ~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~  242 (303)
                      .....-...+.++++|++..+.++  ..++|+.|++....
T Consensus       200 ~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         200 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            112223457789999998655443  57889999987543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.44  E-value=0.68  Score=39.22  Aligned_cols=79  Identities=15%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             CcEEEEECCCceeEEEEcCCCCCeeEEEECCCCCEEEEEeCCCeEEEEeCCCCceEEEecCCCeEEE--EEEcCCC-eEE
Q 048118          149 RTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHA--LCFSPNR-YWL  225 (303)
Q Consensus       149 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~--~~~s~~~-~~l  225 (303)
                      |.|.-+|+++++.+.+.......... .+.-.+.++.+++.|+.++.+|.++|+.+.+++....+.+  +.|..+| +++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            46888888888876554322111111 1122355777899999999999999999988865433322  4444455 555


Q ss_pred             EEE
Q 048118          226 CAA  228 (303)
Q Consensus       226 ~~~  228 (303)
                      ++.
T Consensus       523 ~v~  525 (571)
T d2ad6a1         523 GSM  525 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.69  E-value=6.7  Score=28.94  Aligned_cols=159  Identities=12%  Similarity=0.031  Sum_probs=91.7

Q ss_pred             cCCEEEEEEeeCCCEEEEE-eCCCcEEEEecCCceeeeeecCCCCccceEEEEEcCCCCCCEEEEEeCCCcEEEEECCCc
Q 048118           81 TKDVLSVAFSIDNRQIVSA-SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNC  159 (303)
Q Consensus        81 ~~~i~~i~~~~~~~~l~t~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~i~iwd~~~~  159 (303)
                      ...+..++|++..+.+.-. ..++.|...++.+.....+...  ....+.++++.+-.. ....+-...+.|.+.++...
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~--~~~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ--DLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--TCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe--ccccccEEEEeccCC-eEEEeccCCCEEEEEecCCc
Confidence            3457788999877665544 4557777777755433333321  123467788876432 23334455678999998765


Q ss_pred             eeEEEEcCCCCCeeEEEECCCCCEEEEEe-C--CCeEEEEeCCCCceEEEe-cCCCeEEEEEEcCCCeEEEE--EcCCcE
Q 048118          160 KLRATLAGHTGYVNTVAVSPDGSLCASGG-K--DGVILLWDLAEGKRLYSL-DAGAVIHALCFSPNRYWLCA--ATEQSI  233 (303)
Q Consensus       160 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~--~~~~~i  233 (303)
                      .....+.........++++|...++.... .  ...|.--++......... ..-.....+++.+.+..|..  ...+.|
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            44333333345688999999776665432 2  233544455443322222 22245678888876544433  345778


Q ss_pred             EEEeCCCCc
Q 048118          234 KIWDLESKS  242 (303)
Q Consensus       234 ~iwd~~~~~  242 (303)
                      ...|++...
T Consensus       192 ~~~~~~g~~  200 (263)
T d1npea_         192 ECLNPAQPG  200 (263)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCCCC
Confidence            888886543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.76  E-value=10  Score=30.46  Aligned_cols=57  Identities=12%  Similarity=0.052  Sum_probs=38.2

Q ss_pred             CCEEEEEEeeCCCEEEEEeCCCcEEEEecCCceeeeeecC------CCCccceEEEEEcCCCC
Q 048118           82 KDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQEG------DAHTEWVSCVRFSPNTL  138 (303)
Q Consensus        82 ~~i~~i~~~~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~  138 (303)
                      ...++|+|.|+++++++--.+|.|++++..+.....+...      .........++++|+-.
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~   89 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK   89 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCc
Confidence            4678999999999988776679999987654333222211      11234578899999643