Citrus Sinensis ID: 048127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHEHEEEEEEcc
Coil and Loop (DISEMBL)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFayvlekkeraplTFSLLVQFFFLAILGITANQRFYLLGLYyasptfasamqnsipAVTFVMASSLRLEQVNNGRRDGFAKVLGTiakcppllhqvthatylepehymsssksqnwtwgCIFLFGHCISWAGWMVLqapllkkhpakltltsFTCFFRLIQFLAIAAFVETDinrwkiqsgEELFTIFYAGIVASGIVLSLQT
Flexible Loop (DISEMBL)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Low Complexity Region (SEG)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Disordered region (IsUnstruct)
**LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLS***
Disordered Region (DISOPRED)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLE****MSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Disordered Region (DISEMBL)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEP*********QNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Disordered Region (DISPRO)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYM***KSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9LV20	383	WAT1-related protein At3g	yes	no	0.988	0.647	0.641	6e-92
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.996	0.609	0.569	3e-82
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.984	0.634	0.555	2e-80
F4J9A3	369	WAT1-related protein At3g	no	no	0.976	0.663	0.462	2e-65
Q5PP32	385	WAT1-related protein At3g	no	no	0.988	0.644	0.338	6e-35
O80638	374	WAT1-related protein At2g	no	no	0.960	0.644	0.344	9e-35
Q9SUF1	384	WAT1-related protein At4g	no	no	0.960	0.627	0.332	6e-33
Q8W4R9	398	WAT1-related protein At4g	no	no	0.936	0.590	0.344	7e-33
F4HZQ7	389	WAT1-related protein At1g	no	no	0.996	0.642	0.304	9e-33
Q9FL41	402	WAT1-related protein At5g	no	no	0.976	0.609	0.326	1e-32

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  337 bits (863), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 168/262 (64%), Positives = 203/262 (77%), Gaps = 14/262 (5%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           +KL++AL+ LQFCF GFHIVSRVALNIGVSKV YPV+RN++AL+L+ PFAY  EKKER P
Sbjct: 33  VKLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPP 92

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           LT SLL QFFFLA++GITANQ FYLLGLYYA+PTFASAMQNS+PA+TF+MA +LRLE ++
Sbjct: 93  LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHID 152

Query: 121 NGRRDGFAKVLGTIAKCP-----------PLLHQVTHATYLEPEHYMSSSKSQNWTWGCI 169
             R+ G AKVLGT+               P+  Q      ++ E  + S  S + T G +
Sbjct: 153 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQ---GLNMQKEEVVGSDNSHSLTLGWL 209

Query: 170 FLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSG 229
           +L GHC+SWAGWMVLQAP+LK++PAKLTLTSFTCFF LIQFL IA FVETD+N W I S 
Sbjct: 210 YLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSW 269

Query: 230 EELFTIFYAGIVASGIVLSLQT 251
           EELFTI YAGI+ASG+V+ LQT
Sbjct: 270 EELFTILYAGIIASGLVVYLQT 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  304 bits (779), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 197/267 (73%), Gaps = 17/267 (6%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           +KL  A+LALQF + GFHIVSR ALN+GVSKV +PV+RNI+AL+L+ P AY LEKKER  
Sbjct: 17  VKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPA 76

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           LT S L+QFF LA+ GIT   R   L +    PTFASA+QNS+PA+TF+MA++LRLE+V+
Sbjct: 77  LTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVH 136

Query: 121 NGRRDGFAKVLGTIA-----------KCPPLLH------QVTHATYLEPEHYMSSSKSQN 163
             RRDG AK++GT+A           K PP+ H      +VT + +   +    S+KS+N
Sbjct: 137 ISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSEN 196

Query: 164 WTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINR 223
           WT GCI+L G+C++W+GW+VLQAP+LK++PA+L++TSFTCFF +IQFL IAAF ETD+  
Sbjct: 197 WTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEH 256

Query: 224 WKIQSGEELFTIFYAGIVASGIVLSLQ 250
           WKI SG ELFTI YAG VASGI  S+Q
Sbjct: 257 WKIHSGGELFTILYAGFVASGIAFSVQ 283

Pinus taeda (taxid: 3352)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/270 (55%), Positives = 197/270 (72%), Gaps = 23/270 (8%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           ++L +A+L LQF + GFH+VSR ALN+G+SK+ +PV+RNIIAL+LL PFAY LEKKER  
Sbjct: 18  LQLHIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPA 77

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           +T + L+QFFFLA++GITANQ FYLLGL   SPTFAS+MQNS+PA+TF+MA+ LR+E+V 
Sbjct: 78  ITLNFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVR 137

Query: 121 NGRRDGFAKVLG-----------TIAKCPPL------LHQ---VTHATYLEPEHYMSSSK 160
             RRDG +K+LG           T+ K P +      LH     T++  L P   + ++ 
Sbjct: 138 INRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAP---LGNAA 194

Query: 161 SQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETD 220
            +NWT GCI+L GHC+SW+GW+V QAP+LK +PA+L++TS+TCFF +IQFL IAAF E D
Sbjct: 195 PKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERD 254

Query: 221 INRWKIQSGEELFTIFYAGIVASGIVLSLQ 250
              W   SG ELFTI YAGIVASGI  ++Q
Sbjct: 255 SQAWVFHSGWELFTILYAGIVASGIAFAVQ 284

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J9A3|WTR26_ARATH WAT1-related protein At3g53210 OS=Arabidopsis thaliana GN=At3g53210 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/264 (46%), Positives = 177/264 (67%), Gaps = 19/264 (7%)

Query: 2   KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
           KL +A++  Q  + G H++ R ALN+GVSK+ +P++R I+A  +L+P AY LEKKER  +
Sbjct: 9   KLHIAMVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEKKERPAM 68

Query: 62  TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
             S L+QFF L ++GIT NQ FY+ GL   SPTFASA +N +PAV+F+MA+ L +E+V  
Sbjct: 69  KISFLIQFFLLGLVGITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALLGIEKVEW 128

Query: 122 GRRDGFAKVLGTIA-----------KCP----PLLHQVTHATYLEPEHYMSSSKSQNWTW 166
            R+DG AKV+GTI            K P    P L+ V     ++PE   +  +++NWT 
Sbjct: 129 KRKDGIAKVVGTIVSVAGSLVITLYKGPTIYQPSLNIVNQT--IKPEE--AEEENKNWTL 184

Query: 167 GCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKI 226
           GC+ L GHC+ W+ W+VLQ+PLLKK+PA+ +  S++CFF +IQF  I+A+ E D+ RWKI
Sbjct: 185 GCLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERWKI 244

Query: 227 QSGEELFTIFYAGIVASGIVLSLQ 250
            SG EL+ + Y G+V S +V ++Q
Sbjct: 245 ISGGELYALLYTGLVGSAMVFAIQ 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q5PP32|WTR25_ARATH WAT1-related protein At3g45870 OS=Arabidopsis thaliana GN=At3g45870 PE=2 SV=1

 Score =  147 bits (371), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 154/272 (56%), Gaps = 24/272 (8%)

Query: 2   KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
           K  +A++ +Q    G+H++++VALN+GV+++ + V R++IAL +L+P AY+ +K+ R PL
Sbjct: 11  KAHVAMIGVQLFNGGYHVITKVALNVGVNQLVFCVFRDLIALSILAPLAYIRDKRTRPPL 70

Query: 62  TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
               L+ FFFL + GI  NQ  +L+GL Y +PT+A+A+Q SIP  TF++A  +  E++N 
Sbjct: 71  NRQFLLAFFFLGLTGIFGNQLLFLIGLNYTNPTYAAAIQPSIPVFTFILALIMGTERLNL 130

Query: 122 GRRDGFAKVLGTI--------------------AKCPPLLHQVTHATYLEPEHYMSS--S 159
            + +G AKV GT+                     +   L H  +  T     H+MS   +
Sbjct: 131 FKLEGQAKVGGTLICVAGAVLMVLFRGLALFGETEAESLGHGESRHTETS-GHFMSGFFN 189

Query: 160 KSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET 219
               W  G + L G+C   A ++ +QAP+LKK+PA L++T+++ FF  +  +  A F+  
Sbjct: 190 GLGRWNLGVLCLIGNCTCMAAFLAIQAPVLKKYPANLSVTAYSYFFGTMFMVTSAFFMTN 249

Query: 220 DINRWKIQSGEELFTIFYAGIVASGIVLSLQT 251
           +   W +    E F + YAG++AS +   L T
Sbjct: 250 ESTNWSLTR-SEFFAVVYAGVIASALNYGLLT 280

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  147 bits (370), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 138/258 (53%), Gaps = 17/258 (6%)

Query: 2   KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
           K  + +++LQF + G  I+++ ALN G+S      +R+I+A I ++PFAY L++K R  +
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 62  TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
           T S+  +   L +L  T +Q  Y  G+ Y S TF +AM N +PA  F+MA   RLE+VN 
Sbjct: 67  TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 122 GRRDGFAKVLGTI-----------AKCP--PLLHQVTHATYLEPEHYMSSSKSQNWTWGC 168
            +    AK+LGTI            K P  PL     H  + +  +   +   Q+ T G 
Sbjct: 127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSN---TGVKQDLTKGA 183

Query: 169 IFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET-DINRWKIQ 227
             +   CI WAG++ LQA  LK +P +L+LT++ CF   I+   +A F+E  + + W I 
Sbjct: 184 SLIAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIH 243

Query: 228 SGEELFTIFYAGIVASGI 245
              +L    Y G++ SGI
Sbjct: 244 LDSKLLAAVYGGVICSGI 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 12/253 (4%)

Query: 10  LQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQF 69
           LQF   G +IV    LN G ++    V+RN++A ++L+PFA + E+K R  +T S+L + 
Sbjct: 20  LQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPKMTLSVLWKI 79

Query: 70  FFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAK 129
             L  L    +Q F  LG+   S T+ SA+ N +P+VTF++A  LR+E+VN       AK
Sbjct: 80  MALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAEVRSKAK 139

Query: 130 VLGTIAKCPPLLHQVTHATYLEP------------EHYMSSSKSQNWTWGCIFLFGHCIS 177
           ++GT+      L    +   L P             H  +S    NW  G + +   C++
Sbjct: 140 IIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLGCVA 199

Query: 178 WAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFY 237
           W+G+ VLQ+  +K +PA L+L++  C    +Q  A+A  VE   + W +     LF   Y
Sbjct: 200 WSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVGWDARLFAPLY 259

Query: 238 AGIVASGIVLSLQ 250
            GIV+SGI   +Q
Sbjct: 260 TGIVSSGITYYVQ 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4R9|WTR35_ARATH WAT1-related protein At4g19185 OS=Arabidopsis thaliana GN=At4g19185 PE=2 SV=1

 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 150/261 (57%), Gaps = 26/261 (9%)

Query: 16  GFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAIL 75
           G+H++++VALN+GV+++ + V R+++AL +L+P AY  E+K R P+  SLL+ FFFL + 
Sbjct: 34  GYHVITKVALNVGVNQLVFCVCRDLLALSILAPLAYFRERKIRTPMNKSLLLSFFFLGLA 93

Query: 76  GITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIA 135
           G+  NQ  +L+GL Y +PT+A+A+Q SIP  TF++A  +  E+VN  R +G  KV GT+ 
Sbjct: 94  GVFGNQLLFLIGLTYTNPTYAAAIQPSIPVFTFLLAVMMGTERVNLLRIEGQTKVGGTLV 153

Query: 136 -----------KCPPLL----------HQVTHATYLEPEHYMSSS----KSQNWTWGCIF 170
                      + P LL          ++++     EP  ++ S       + W  G + 
Sbjct: 154 CVMGAVFMVVFRGPALLGDKDADFAMNNEISAKGQPEPTGWLVSGFLDLGFEQWHIGVLC 213

Query: 171 LFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGE 230
           L G+C+  A ++ +QAPLLKK+PA L++ + + FF  +     A F+  +   WK+    
Sbjct: 214 LIGNCMCMATFLAIQAPLLKKYPANLSVAALSYFFGTVLMCTTAFFMVKEPLDWKLTQ-S 272

Query: 231 ELFTIFYAGIVASGIVLSLQT 251
           E+  + YAG++AS +   L T
Sbjct: 273 EVLAVIYAGVIASALNYGLLT 293

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 19/269 (7%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           +K  +A++++QF + G +I++ V+L  G++     V+R+ IA  +++PFA   E+K R  
Sbjct: 9   LKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPK 68

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           +TF + +Q   L  +    +Q  Y +G+ Y S TFASA  N +PA+TFV+A   RLE VN
Sbjct: 69  MTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVN 128

Query: 121 NGRRDGFAKVLGT-IAKCPPLLHQVTHATYLEPEHYMSSSK------------------S 161
             +    AKV+GT I     LL  +     ++   +                        
Sbjct: 129 FKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMD 188

Query: 162 QNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDI 221
           ++W  G + L G    WAG+ +LQ+  LK++PA+L+LT+  C    ++  A++     D+
Sbjct: 189 KHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDL 248

Query: 222 NRWKIQSGEELFTIFYAGIVASGIVLSLQ 250
           + WKI     LF   Y+G++ SG+   +Q
Sbjct: 249 SAWKIGFDSNLFAAAYSGVICSGVAYYVQ 277

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 144/263 (54%), Gaps = 18/263 (6%)

Query: 6   ALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSL 65
           A+++LQF + G +I+++++LN G+S     V+R+ IA  +++PFA+  E+K +  +TFS+
Sbjct: 21  AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSI 80

Query: 66  LVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRD 125
            +Q F L +LG   +Q FY +GL Y SPTF+ AM N +PA+TF++A   R+E ++  +  
Sbjct: 81  FMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLW 140

Query: 126 GFAKVLGTIAKCP-PLLHQVTHATYLEP-----EHYMSSSKS-----------QNWTWGC 168
             AK+ GT+      +L  +     +E       H   SS +           + +  G 
Sbjct: 141 CQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGS 200

Query: 169 IFLFGHCISWAGWMVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQ 227
           I L    ++WA   VLQA +LK +   +L+LT+  CF   +Q +A+   +E + + W+I 
Sbjct: 201 ILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIG 260

Query: 228 SGEELFTIFYAGIVASGIVLSLQ 250
               L    Y+GIVAS I   +Q
Sbjct: 261 WDMNLLAAAYSGIVASSISYYVQ 283

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
224133164	363	predicted protein [Populus trichocarpa]	1.0	0.691	0.756	1e-110
225456049	364	PREDICTED: auxin-induced protein 5NG4 [V	0.952	0.656	0.724	1e-97
356520631	359	PREDICTED: auxin-induced protein 5NG4-li	0.952	0.665	0.692	8e-96
357500129	362	Auxin-induced protein 5NG4 [Medicago tru	0.952	0.660	0.712	1e-94
297834720	361	nodulin MtN21 family protein [Arabidopsi	0.988	0.686	0.646	4e-91
15229596	360	EamA domain-containing protein [Arabidop	0.988	0.688	0.641	3e-90
9294076	383	nodulin-like protein [Arabidopsis thalia	0.988	0.647	0.641	3e-90
356529543	359	PREDICTED: auxin-induced protein 5NG4-li	0.952	0.665	0.688	2e-89
449439549	362	PREDICTED: auxin-induced protein 5NG4-li	0.944	0.654	0.711	4e-86
449497599	362	PREDICTED: auxin-induced protein 5NG4-li	0.944	0.654	0.711	4e-86

>gi|224133164|ref|XP_002321499.1| predicted protein [Populus trichocarpa] gi|222868495|gb|EEF05626.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/263 (75%), Positives = 220/263 (83%), Gaps = 12/263 (4%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           MKLL+AL+ALQFC+ GFHIVSRVALNIGVSKV YPV+RNIIAL+LL PFAY  EKKER P
Sbjct: 11  MKLLLALVALQFCYSGFHIVSRVALNIGVSKVVYPVYRNIIALLLLGPFAYFFEKKERPP 70

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           LTFS+LVQ FFLA+LGITANQ FYLLGLYYASP FASAMQNS+PA+TFVMAS+L LE+VN
Sbjct: 71  LTFSVLVQLFFLALLGITANQGFYLLGLYYASPAFASAMQNSVPAITFVMASALGLEKVN 130

Query: 121 NGRRDGFAKVLGTIA-----------KCPPLLHQVTHATY-LEPEHYMSSSKSQNWTWGC 168
             RRDG AKVLGTIA           K PPLLHQ+T     +  E  MSS K QNWTWGC
Sbjct: 131 ISRRDGLAKVLGTIASIGGASVITLYKGPPLLHQITQQEQGITSEEDMSSKKMQNWTWGC 190

Query: 169 IFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQS 228
           IFLFGHC+SWAGWMV QAP+LKK+PAKL++TSFTC F LIQFL IAAFVETD+N WKIQS
Sbjct: 191 IFLFGHCLSWAGWMVFQAPVLKKYPAKLSVTSFTCLFGLIQFLVIAAFVETDVNHWKIQS 250

Query: 229 GEELFTIFYAGIVASGIVLSLQT 251
           GEELFTI YAGIV+S IV+SLQT
Sbjct: 251 GEELFTILYAGIVSSAIVISLQT 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456049|ref|XP_002277607.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|297734266|emb|CBI15513.3| unnamed protein product [Vitis vinifera]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/250 (72%), Positives = 200/250 (80%), Gaps = 11/250 (4%)

Query: 13  CFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFL 72
           C+ G HIVSRVALNIGVSKV YPV+RN+IAL+LL PFAY  EKKER PLTFSLLVQFF L
Sbjct: 23  CYAGTHIVSRVALNIGVSKVVYPVYRNLIALLLLGPFAYFSEKKERPPLTFSLLVQFFLL 82

Query: 73  AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLG 132
           A LGITANQ FYLLGLYYASPTFASAMQNS+PA+TFVMA +LRLE+V+  RR G AKVLG
Sbjct: 83  ASLGITANQGFYLLGLYYASPTFASAMQNSVPAITFVMAFALRLEKVDISRRYGLAKVLG 142

Query: 133 TIA-----------KCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGW 181
           TIA           K PPLLHQ         E  M S K QNWTWGC++L GHC+SWAGW
Sbjct: 143 TIASIGGATIITIYKGPPLLHQTHPQPGNSLEEDMYSRKMQNWTWGCVYLVGHCLSWAGW 202

Query: 182 MVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIV 241
           MVLQAP+L+ +PAKL+LTSFTCFF LIQFL IAAFVET+   WKIQSGEELFTI YAG+V
Sbjct: 203 MVLQAPVLRNYPAKLSLTSFTCFFGLIQFLIIAAFVETNPELWKIQSGEELFTILYAGVV 262

Query: 242 ASGIVLSLQT 251
           A+GIV SLQT
Sbjct: 263 AAGIVFSLQT 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520631|ref|XP_003528964.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 173/250 (69%), Positives = 200/250 (80%), Gaps = 11/250 (4%)

Query: 13  CFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFL 72
           CF G+HIVSR+ALNIGVS+V YPV+RN+IAL+LLSPFAYVLEK +R PLT SLLVQFF L
Sbjct: 21  CFAGYHIVSRLALNIGVSQVIYPVYRNLIALLLLSPFAYVLEKNQRPPLTLSLLVQFFLL 80

Query: 73  AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLG 132
           A+LGITANQ FYLLGLYYASPTFASA+QNS+PA+TF++A +LRLE+VN  RRDG AKVLG
Sbjct: 81  ALLGITANQGFYLLGLYYASPTFASALQNSVPAITFILALALRLEEVNITRRDGLAKVLG 140

Query: 133 TIA-----------KCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGW 181
           TIA           K PPLLH        +      S+K QNWTWGCI+L GHC+SWA W
Sbjct: 141 TIASVGGATVITLYKGPPLLHLQMDQIQGDTLEVDQSTKVQNWTWGCIYLLGHCLSWACW 200

Query: 182 MVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIV 241
           +V QAP++KK+PAKLTLTSFTCFF LIQFL IAAF E D+  WKIQS EELF I YAGI+
Sbjct: 201 IVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAENDLENWKIQSLEELFIILYAGII 260

Query: 242 ASGIVLSLQT 251
           ASG+V+SLQT
Sbjct: 261 ASGVVISLQT 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500129|ref|XP_003620353.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355495368|gb|AES76571.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/257 (71%), Positives = 209/257 (81%), Gaps = 18/257 (7%)

Query: 11  QFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFF 70
           QFCF GFHIVSR+ALN+GVSKV YP++RN+IAL+LLSP AY LEK +R PLT SLLVQFF
Sbjct: 19  QFCFAGFHIVSRLALNMGVSKVVYPIYRNLIALLLLSPLAYFLEKNQRPPLTLSLLVQFF 78

Query: 71  FLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKV 130
            LA+LGITANQ FYLLGLYYASPTFASAMQNS+PA+TFV+AS+LRLE+ N  RRDG AKV
Sbjct: 79  LLALLGITANQGFYLLGLYYASPTFASAMQNSVPAITFVLASALRLEETNIARRDGLAKV 138

Query: 131 LGTIA-----------KCPPLLH-QVTH----ATYLEPEHYMSSSKSQNWTWGCIFLFGH 174
           +GTIA           K PPLLH Q+ H     T L+ +   SS+K QNWTWGCI+L GH
Sbjct: 139 VGTIASVGGATIITLYKGPPLLHLQMDHIQGDNTLLQVDE--SSTKMQNWTWGCIYLLGH 196

Query: 175 CISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFT 234
           C+SWAGW+V QAP++KK+PAKLTLTSFTCFF LIQFL IAAF E D  +WKIQS EELFT
Sbjct: 197 CLSWAGWIVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFTENDFEKWKIQSSEELFT 256

Query: 235 IFYAGIVASGIVLSLQT 251
           I YAGIVASGIV+SLQT
Sbjct: 257 ILYAGIVASGIVISLQT 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834720|ref|XP_002885242.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata] gi|297331082|gb|EFH61501.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/263 (64%), Positives = 204/263 (77%), Gaps = 15/263 (5%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           +KL++AL+ LQFCF GFHIVSRVALNIGVSKV YPV+RN++AL+L+ PFAY  EKKER P
Sbjct: 10  VKLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPP 69

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           LT SLL QFFFLA++GITANQ FYLLGLYYA+PTFASAMQNS+PA+TF+MA +LRLE ++
Sbjct: 70  LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACTLRLEHID 129

Query: 121 NGRRDGFAKVLGTIAKCP-----------PLLHQVTHATYLEPEHYMSSSK-SQNWTWGC 168
             R+ G AKVLGT+               P+  Q      ++ E  + S K S NW  G 
Sbjct: 130 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQ---GLNMQKEEVIGSDKSSHNWKLGW 186

Query: 169 IFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQS 228
           ++L GHC+SWAGWMVLQAP+LK++PAKLTLTSFTCFF LIQFL IA FVETD+N W I S
Sbjct: 187 LYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVS 246

Query: 229 GEELFTIFYAGIVASGIVLSLQT 251
            EELFTI YAGI+ASG+V+ LQT
Sbjct: 247 WEELFTILYAGIIASGLVVYLQT 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229596|ref|NP_188448.1| EamA domain-containing protein [Arabidopsis thaliana] gi|332642541|gb|AEE76062.1| EamA domain-containing protein [Arabidopsis thaliana]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/262 (64%), Positives = 203/262 (77%), Gaps = 14/262 (5%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           +KL++AL+ LQFCF GFHIVSRVALNIGVSKV YPV+RN++AL+L+ PFAY  EKKER P
Sbjct: 10  VKLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPP 69

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           LT SLL QFFFLA++GITANQ FYLLGLYYA+PTFASAMQNS+PA+TF+MA +LRLE ++
Sbjct: 70  LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHID 129

Query: 121 NGRRDGFAKVLGTIAKCP-----------PLLHQVTHATYLEPEHYMSSSKSQNWTWGCI 169
             R+ G AKVLGT+               P+  Q      ++ E  + S  S + T G +
Sbjct: 130 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQ---GLNMQKEEVVGSDNSHSLTLGWL 186

Query: 170 FLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSG 229
           +L GHC+SWAGWMVLQAP+LK++PAKLTLTSFTCFF LIQFL IA FVETD+N W I S 
Sbjct: 187 YLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSW 246

Query: 230 EELFTIFYAGIVASGIVLSLQT 251
           EELFTI YAGI+ASG+V+ LQT
Sbjct: 247 EELFTILYAGIIASGLVVYLQT 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294076|dbj|BAB02033.1| nodulin-like protein [Arabidopsis thaliana]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/262 (64%), Positives = 203/262 (77%), Gaps = 14/262 (5%)

Query: 1   MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
           +KL++AL+ LQFCF GFHIVSRVALNIGVSKV YPV+RN++AL+L+ PFAY  EKKER P
Sbjct: 33  VKLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPP 92

Query: 61  LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
           LT SLL QFFFLA++GITANQ FYLLGLYYA+PTFASAMQNS+PA+TF+MA +LRLE ++
Sbjct: 93  LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHID 152

Query: 121 NGRRDGFAKVLGTIAKCP-----------PLLHQVTHATYLEPEHYMSSSKSQNWTWGCI 169
             R+ G AKVLGT+               P+  Q      ++ E  + S  S + T G +
Sbjct: 153 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQ---GLNMQKEEVVGSDNSHSLTLGWL 209

Query: 170 FLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSG 229
           +L GHC+SWAGWMVLQAP+LK++PAKLTLTSFTCFF LIQFL IA FVETD+N W I S 
Sbjct: 210 YLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSW 269

Query: 230 EELFTIFYAGIVASGIVLSLQT 251
           EELFTI YAGI+ASG+V+ LQT
Sbjct: 270 EELFTILYAGIIASGLVVYLQT 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529543|ref|XP_003533350.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/250 (68%), Positives = 199/250 (79%), Gaps = 11/250 (4%)

Query: 13  CFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFL 72
           CF G+HIVSR+ALNIGVS+V YPV+RN+IA++LLSPFAYVLEK +R PLT SLL QFF L
Sbjct: 21  CFAGYHIVSRLALNIGVSQVVYPVYRNLIAVLLLSPFAYVLEKNQRPPLTLSLLAQFFLL 80

Query: 73  AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLG 132
           A+LGITANQ FYLLGLYYASPTFASA+QNS+PA+TFV+A +LRLE+VN  RR G AKVLG
Sbjct: 81  ALLGITANQGFYLLGLYYASPTFASALQNSVPAITFVLALALRLEEVNIRRRHGLAKVLG 140

Query: 133 TIA-----------KCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGW 181
           TIA           K PPLLH        +      S+K QNWTWGCI+L GHC+SWAGW
Sbjct: 141 TIASVGGASVITLYKGPPLLHLQMDQIQGDTLEVDQSTKVQNWTWGCIYLLGHCLSWAGW 200

Query: 182 MVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIV 241
           +V QAP++KK+PAKLTLTSFTCFF LIQFL IAAF E D+  WKIQS EELF I YAGI+
Sbjct: 201 IVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAENDLENWKIQSLEELFIILYAGII 260

Query: 242 ASGIVLSLQT 251
           ASG+V+SLQT
Sbjct: 261 ASGVVISLQT 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439549|ref|XP_004137548.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 180/253 (71%), Positives = 196/253 (77%), Gaps = 16/253 (6%)

Query: 13  CFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFL 72
           C+ GFHIVSRVALNIGVSKV YPV+RN IAL LLSPFAY LEK ER PLTFSLL+QFF L
Sbjct: 23  CYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLLQFFLL 82

Query: 73  AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLG 132
           A+LGITANQ FYLLGL YASPTFASAMQNS+PA+TFVMAS LRLEQVN  R DG AK+LG
Sbjct: 83  ALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASVLRLEQVNFRRIDGLAKILG 142

Query: 133 TIA-----------KCPPLLHQ---VTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISW 178
           TI            + PPLLH       ++ LE +    + K QNW WGCI+L GHC+SW
Sbjct: 143 TIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDD--PTIKVQNWRWGCIYLLGHCLSW 200

Query: 179 AGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYA 238
           AGWMV Q  LLKK+PAKLTLTS+TCFF LIQFL IA FVETD   WKIQS EELFTI YA
Sbjct: 201 AGWMVFQGSLLKKYPAKLTLTSYTCFFGLIQFLVIAGFVETDYQYWKIQSVEELFTILYA 260

Query: 239 GIVASGIVLSLQT 251
           GIVASGIV SLQT
Sbjct: 261 GIVASGIVFSLQT 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497599|ref|XP_004160446.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 180/253 (71%), Positives = 196/253 (77%), Gaps = 16/253 (6%)

Query: 13  CFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFL 72
           C+ GFHIVSRVALNIGVSKV YPV+RN IAL LLSPFAY LEK ER PLTFSLL+QFF L
Sbjct: 23  CYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLLQFFLL 82

Query: 73  AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLG 132
           A+LGITANQ FYLLGL YASPTFASAMQNS+PA+TFVMAS LRLEQVN  R DG AK+LG
Sbjct: 83  ALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASVLRLEQVNFRRIDGLAKILG 142

Query: 133 TIA-----------KCPPLLHQ---VTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISW 178
           TI            + PPLLH       ++ LE +    + K QNW WGCI+L GHC+SW
Sbjct: 143 TIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDD--PTIKVQNWRWGCIYLLGHCLSW 200

Query: 179 AGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYA 238
           AGWMV Q  LLKK+PAKLTLTS+TCFF LIQFL IA FVETD   WKIQS EELFTI YA
Sbjct: 201 AGWMVFQGSLLKKYPAKLTLTSYTCFFGLIQFLVIAGFVETDYQYWKIQSVEELFTILYA 260

Query: 239 GIVASGIVLSLQT 251
           GIVASGIV SLQT
Sbjct: 261 GIVASGIVFSLQT 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	1.0	0.655	0.644	6.2e-85
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.537	0.329	0.614	4.1e-77
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.621	0.401	0.584	6.6e-77
TAIR|locus:2102028	369	UMAMIT6 "Usually multiple acid	0.980	0.666	0.456	7.1e-61
TAIR|locus:2077162	385	UMAMIT3 "Usually multiple acid	0.529	0.345	0.421	3.6e-42
TAIR|locus:505006500	398	UMAMIT2 "Usually multiple acid	0.513	0.324	0.434	7.4e-40
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.533	0.344	0.373	1.1e-36
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.529	0.330	0.390	1.3e-36
TAIR|locus:2163513	381	UMAMIT1 "Usually multiple acid	0.513	0.338	0.403	3.9e-35
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.972	0.652	0.352	1.3e-34

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 167/259 (64%), Positives = 203/259 (78%)

Query:     1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
             +KL++AL+ LQFCF GFHIVSRVALNIGVSKV YPV+RN++AL+L+ PFAY  EKKER P
Sbjct:    33 VKLVVALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPP 92

Query:    61 LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
             LT SLL QFFFLA++GITANQ FYLLGLYYA+PTFASAMQNS+PA+TF+MA +LRLE ++
Sbjct:    93 LTISLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHID 152

Query:   121 NGRRDGFAKVLGTIAKCPPL----LHQ----VTHATYLEPEHYMSSSKSQNWTWGCIFLF 172
               R+ G AKVLGT+          L++          ++ E  + S  S + T G ++L 
Sbjct:   153 LVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLM 212

Query:   173 GHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEEL 232
             GHC+SWAGWMVLQAP+LK++PAKLTLTSFTCFF LIQFL IA FVETD+N W I S EEL
Sbjct:   213 GHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEEL 272

Query:   233 FTIFYAGIVASGIVLSLQT 251
             FTI YAGI+ASG+V+ LQT
Sbjct:   273 FTILYAGIIASGLVVYLQT 291

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 424 (154.3 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
 Identities = 83/135 (61%), Positives = 106/135 (78%)

Query:     1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
             +KL  A+LALQF + GFHIVSR ALN+GVSKV +PV+RNI+AL+L+ P AY LEKKER  
Sbjct:    17 VKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPA 76

Query:    61 LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
             LT S L+QFF LA+ GIT   R   L +    PTFASA+QNS+PA+TF+MA++LRLE+V+
Sbjct:    77 LTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVH 136

Query:   121 NGRRDGFAKVLGTIA 135
               RRDG AK++GT+A
Sbjct:   137 ISRRDGLAKIIGTVA 151

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
 Identities = 93/159 (58%), Positives = 121/159 (76%)

Query:     1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
             ++L +A+L LQF + GFH+VSR ALN+G+SK+ +PV+RNIIAL+LL PFAY LEKKER  
Sbjct:    18 LQLHIAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPA 77

Query:    61 LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
             +T + L+QFFFLA++GITANQ FYLLGL   SPTFAS+MQNS+PA+TF+MA+ LR+E+V 
Sbjct:    78 ITLNFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVR 137

Query:   121 NGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSS 159
               RRDG +K+LGT A C      +T   Y  P  Y  +S
Sbjct:   138 INRRDGISKILGT-ALCVAGASVIT--LYKGPTIYTPAS 173

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2102028 UMAMIT6 "Usually multiple acids move in and out Transporters 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 120/263 (45%), Positives = 178/263 (67%)

Query:     2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
             KL +A++  Q  + G H++ R ALN+GVSK+ +P++R I+A  +L+P AY LEKKER  +
Sbjct:     9 KLHIAMVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEKKERPAM 68

Query:    62 TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
               S L+QFF L ++GIT NQ FY+ GL   SPTFASA +N +PAV+F+MA+ L +E+V  
Sbjct:    69 KISFLIQFFLLGLVGITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALLGIEKVEW 128

Query:   122 GRRDGFAKVLGTIAKCP----------PLLHQ----VTHATYLEPEHYMSSSKSQNWTWG 167
              R+DG AKV+GTI              P ++Q    + + T ++PE   +  +++NWT G
Sbjct:   129 KRKDGIAKVVGTIVSVAGSLVITLYKGPTIYQPSLNIVNQT-IKPEE--AEEENKNWTLG 185

Query:   168 CIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQ 227
             C+ L GHC+ W+ W+VLQ+PLLKK+PA+ +  S++CFF +IQF  I+A+ E D+ RWKI 
Sbjct:   186 CLCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERWKII 245

Query:   228 SGEELFTIFYAGIVASGIVLSLQ 250
             SG EL+ + Y G+V S +V ++Q
Sbjct:   246 SGGELYALLYTGLVGSAMVFAIQ 268

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2077162 UMAMIT3 "Usually multiple acids move in and out Transporters 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 56/133 (42%), Positives = 93/133 (69%)

Query:     2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
             K  +A++ +Q    G+H++++VALN+GV+++ + V R++IAL +L+P AY+ +K+ R PL
Sbjct:    11 KAHVAMIGVQLFNGGYHVITKVALNVGVNQLVFCVFRDLIALSILAPLAYIRDKRTRPPL 70

Query:    62 TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
                 L+ FFFL + GI  NQ  +L+GL Y +PT+A+A+Q SIP  TF++A  +  E++N 
Sbjct:    71 NRQFLLAFFFLGLTGIFGNQLLFLIGLNYTNPTYAAAIQPSIPVFTFILALIMGTERLNL 130

Query:   122 GRRDGFAKVLGTI 134
              + +G AKV GT+
Sbjct:   131 FKLEGQAKVGGTL 143

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:505006500 UMAMIT2 "Usually multiple acids move in and out Transporters 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 56/129 (43%), Positives = 90/129 (69%)

Query:     6 ALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSL 65
             A+  +Q    G+H++++VALN+GV+++ + V R+++AL +L+P AY  E+K R P+  SL
Sbjct:    24 AMAFVQLFNGGYHVITKVALNVGVNQLVFCVCRDLLALSILAPLAYFRERKIRTPMNKSL 83

Query:    66 LVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRD 125
             L+ FFFL + G+  NQ  +L+GL Y +PT+A+A+Q SIP  TF++A  +  E+VN  R +
Sbjct:    84 LLSFFFLGLAGVFGNQLLFLIGLTYTNPTYAAAIQPSIPVFTFLLAVMMGTERVNLLRIE 143

Query:   126 GFAKVLGTI 134
             G  KV GT+
Sbjct:   144 GQTKVGGTL 152

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 50/134 (37%), Positives = 82/134 (61%)

Query:     1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAP 60
             +K  +A++++QF + G +I++ V+L  G++     V+R+ IA  +++PFA   E+K R  
Sbjct:     9 LKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPK 68

Query:    61 LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVN 120
             +TF + +Q   L  +    +Q  Y +G+ Y S TFASA  N +PA+TFV+A   RLE VN
Sbjct:    69 MTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVN 128

Query:   121 NGRRDGFAKVLGTI 134
               +    AKV+GT+
Sbjct:   129 FKKVRSIAKVVGTV 142

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 52/133 (39%), Positives = 88/133 (66%)

Query:     2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
             K   A+++LQF + G +I+++++LN G+S     V+R+ IA  +++PFA+  E+K +  +
Sbjct:    17 KPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKI 76

Query:    62 TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
             TFS+ +Q F L +LG   +Q FY +GL Y SPTF+ AM N +PA+TF++A   R+E ++ 
Sbjct:    77 TFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDL 136

Query:   122 GRRDGFAKVLGTI 134
              +    AK+ GT+
Sbjct:   137 KKLWCQAKIAGTV 149

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2163513 UMAMIT1 "Usually multiple acids move in and out Transporters 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 52/129 (40%), Positives = 86/129 (66%)

Query:     6 ALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSL 65
             A+  +Q    G+H+V++VALN+GV+++ + V R+++AL +L+P A+  E+  R P+  S+
Sbjct:    23 AMTLVQVINGGYHVVTKVALNVGVNQLVFCVFRDLLALSILAPLAFFRERTIRPPMNRSI 82

Query:    66 LVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRD 125
                 FFL + GI  NQ  +L+GL Y +PT+A+A+Q SIP  TF++A  +  E+VN  + +
Sbjct:    83 FFSLFFLGLAGIFGNQLLFLMGLSYTNPTYAAAIQPSIPVFTFLLAVLMGTEKVNLLKVE 142

Query:   126 GFAKVLGTI 134
             G  KV GT+
Sbjct:   143 GQTKVGGTL 151

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 90/255 (35%), Positives = 138/255 (54%)

Query:     2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL 61
             K  + +++LQF + G  I+++ ALN G+S      +R+I+A I ++PFAY L++K R  +
Sbjct:     7 KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query:    62 TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
             T S+  +   L +L  T +Q  Y  G+ Y S TF +AM N +PA  F+MA   RLE+VN 
Sbjct:    67 TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query:   122 GRRDGFAKVLGTIAKCP-PLLHQVTHATYL-----EPE--HYMSSSKS--QNWTWGCIFL 171
              +    AK+LGTI      +L  V     +      P   H  SS+    Q+ T G   +
Sbjct:   127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query:   172 FGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET-DINRWKIQSGE 230
                CI WAG++ LQA  LK +P +L+LT++ CF   I+   +A F+E  + + W I    
Sbjct:   187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDS 246

Query:   231 ELFTIFYAGIVASGI 245
             +L    Y G++ SGI
Sbjct:   247 KLLAAVYGGVICSGI 261

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LV20	WTR17_ARATH	No assigned EC number	0.6412	0.9880	0.6475	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.853.1 hypothetical protein (324 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-15

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 73.8 bits (181), Expect = 3e-15
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 29/262 (11%)

Query: 3   LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIA-LILLSPFAYVLEKKERAPL 61
            L A+LA +   VG   + +VA + G++   +  +  ++A L+LL    +    +   PL
Sbjct: 14  FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPL 73

Query: 62  TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNN 121
           + S+L +   L  LG       Y+ G+ Y++PT ASA+ N  PA+TF++A   R+E+V+ 
Sbjct: 74  SVSILSKIGLLGFLGSMYVITGYI-GIEYSNPTLASAISNITPALTFILAIIFRMEKVSF 132

Query: 122 GRRDGFAKVLGTI-------------------AKCPPLLHQVTHATYLEPEHYMSSSKSQ 162
             R   AKV+GTI                   A  PP L+    +  L       SS + 
Sbjct: 133 KERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPL-------SSSNS 185

Query: 163 NWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVE-TDI 221
           +W  G   L    I  +   +LQA ++ ++PA  T++        I    I   VE  + 
Sbjct: 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245

Query: 222 NRWKIQSGEELFTIFYAGIVAS 243
           + W I     L TI    I+ S
Sbjct: 246 SVWIIHFDITLITIVTMAIITS 267

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.94
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.93
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
PRK11689	295	aromatic amino acid exporter; Provisional	99.91
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.89
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.81
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.78
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.76
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.71
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.62
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.56
COG2510	140	Predicted membrane protein [Function unknown]	99.52
COG2962	293	RarD Predicted permeases [General function predict	99.47
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.35
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.33
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.33
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.21
KOG2765	416	consensus Predicted membrane protein [Function unk	99.2
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.17
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.01
PRK11272	292	putative DMT superfamily transporter inner membran	99.0
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.0
PRK11689	295	aromatic amino acid exporter; Provisional	98.82
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.79
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.76
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.74
PLN00411	358	nodulin MtN21 family protein; Provisional	98.69
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.69
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.63
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.45
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.37
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.34
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.32
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.28
KOG2766	336	consensus Predicted membrane protein [Function unk	98.27
PRK15430	296	putative chloramphenical resistance permease RarD;	98.22
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.16
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.12
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.03
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.96
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.88
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.64
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.53
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.49
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.47
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.23
KOG1580	337	consensus UDP-galactose transporter related protei	97.1
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.06
KOG1581	327	consensus UDP-galactose transporter related protei	96.93
COG2962	293	RarD Predicted permeases [General function predict	96.74
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.64
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.58
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.57
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.51
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.36
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	95.89
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.83
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.67
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.39
COG2076	106	EmrE Membrane transporters of cations and cationic	95.33
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.11
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.02
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.0
PRK09541	110	emrE multidrug efflux protein; Reviewed	94.93
PRK11431	105	multidrug efflux system protein; Provisional	94.89
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	94.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.24
PRK13499	345	rhamnose-proton symporter; Provisional	94.01
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	93.74
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.88
PRK13499	345	rhamnose-proton symporter; Provisional	90.3
KOG1580	337	consensus UDP-galactose transporter related protei	90.04
COG2510	140	Predicted membrane protein [Function unknown]	87.89
KOG2765	416	consensus Predicted membrane protein [Function unk	87.53
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	85.81
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	85.08
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	84.97
KOG1581	327	consensus UDP-galactose transporter related protei	82.06

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=2e-28  Score=214.67  Aligned_cols=242  Identities=24%  Similarity=0.327  Sum_probs=188.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE-RAPLTFSLLVQFFFLAILGITAN   80 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~   80 (251)
                      |+|.+|+...+..+...++.|.++++|++|..+.++|+.+|+++++++...++|++ +++.+++++.++...|+++ ..+
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~   91 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMY   91 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHH
Confidence            78999999999999999999999999999999999999999999999987654432 3444677888888899998 578


Q ss_pred             HHHHHHhhhccChhhhhhccchhHHHHHHHHHHh------hcccccccccceeE-EEEeEEeeCCcccccccccc-cc--
Q 048127           81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSL------RLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHAT-YL--  150 (251)
Q Consensus        81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~------~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~-~~--  150 (251)
                      +.+++.|++|+++++++++.+++|+++.++++++      +|||+++++++|+. +++|+.+     +..+.+.. ..  
T Consensus        92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l-----l~~~~g~~~~~~~  166 (358)
T PLN00411         92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV-----VIFYHGPRVFVAS  166 (358)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH-----HHHccCccccccc
Confidence            8899999999999999999999999999999998      69999999999999 9999988     43211000 00  


Q ss_pred             -----CC--ccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeC-Ccc
Q 048127          151 -----EP--EHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET-DIN  222 (251)
Q Consensus       151 -----~~--~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  222 (251)
                           +.  .......+..++..|+++.++++++||+|++++||..+++++....+++++.++++...+.....++ +..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~  246 (358)
T PLN00411        167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS  246 (358)
T ss_pred             ccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence                 00  0000011122456799999999999999999999998998766677888888888888777666543 222


Q ss_pred             cceeccCchHHHHHHHHHHhhhhheeee
Q 048127          223 RWKIQSGEELFTIFYAGIVASGIVLSLQ  250 (251)
Q Consensus       223 ~~~~~~~~~~~~l~ylgi~~t~~~~~l~  250 (251)
                      .|..........++|.+++ +.++|.+|
T Consensus       247 ~~~~~~~~~~~~i~y~~i~-t~lay~lw  273 (358)
T PLN00411        247 VWIIHFDITLITIVTMAII-TSVYYVIH  273 (358)
T ss_pred             cceeccchHHHHHHHHHHH-HHHHHHHH
Confidence            3332223345578899976 56788665

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.94  E-value=2.1e-25  Score=191.46  Aligned_cols=219  Identities=16%  Similarity=0.165  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRF   83 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~   83 (251)
                      .+.++...++||++++++|...++ +||..++++|+.+++++++++...++++   +.+++++.+....|.++...++.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~   85 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNGM   85 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999887 9999999999999999998886543222   234667777778888876678889


Q ss_pred             HHHhh-hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCC
Q 048127           84 YLLGL-YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKS  161 (251)
Q Consensus        84 ~~~~l-~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (251)
                      ++.+. +++++++++++.++.|+++.+++.+ +|||++++++.|+. +++|+.+     +..++            . . 
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~l-----l~~~~------------~-~-  145 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVL-----LNSGG------------N-L-  145 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHH-----HhcCc------------c-c-
Confidence            99999 9999999999999999999999986 69999999999998 9999887     54211            1 1 


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHH
Q 048127          162 QNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIV  241 (251)
Q Consensus       162 ~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~  241 (251)
                      +....|+++.++++++||.|.+..||..++  ++...+.+++.++++.+.+.....+++...  .+..+.|..++|++++
T Consensus       146 ~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~  221 (292)
T PRK11272        146 SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVF  221 (292)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHH
Confidence            123579999999999999999998886543  345567789999999888877654332111  1122568899999999


Q ss_pred             hhhhheeee
Q 048127          242 ASGIVLSLQ  250 (251)
Q Consensus       242 ~t~~~~~l~  250 (251)
                      +|+++|.++
T Consensus       222 ~s~~~~~l~  230 (292)
T PRK11272        222 GSIIAISAY  230 (292)
T ss_pred             HHHHHHHHH
Confidence            999988654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.93  E-value=4e-25  Score=190.42  Aligned_cols=222  Identities=13%  Similarity=0.188  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ   81 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~   81 (251)
                      +..+..++++++||++++++|...++ +||..+.++|+.++++.++++.  +++    +.+++.   ....|+.....++
T Consensus         4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~~---~~~~g~~~~~~~~   73 (299)
T PRK11453          4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP----KVPLNL---LLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC----CCchHH---HHHHHHHHHHHHH
Confidence            45567888999999999999999987 9999999999999887766543  111    122232   3444555444566


Q ss_pred             HHHHHhhhc-cChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCc
Q 048127           82 RFYLLGLYY-ASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSS  159 (251)
Q Consensus        82 ~~~~~~l~~-~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~  159 (251)
                      .+++.+++| .++++++++.++.|+++.+++++++|||++++++.|.. +++|+.+     +..++            ..
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~l-----l~~~~------------~~  136 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLV-----LIEDS------------LN  136 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHH-----hcccc------------CC
Confidence            778899998 58899999999999999999999999999999999998 9999988     55321            01


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCc--hhHHHHHHHHHHHHHHHHHHhheeCCc---ccceeccCchHHH
Q 048127          160 KSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPA--KLTLTSFTCFFRLIQFLAIAAFVETDI---NRWKIQSGEELFT  234 (251)
Q Consensus       160 ~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~  234 (251)
                      ..+....|+++.++++++||.|++++||..++.++  ......+++..+.+.........+++.   ..+...+...|..
T Consensus       137 ~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (299)
T PRK11453        137 GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILS  216 (299)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHH
Confidence            11122469999999999999999999997666533  234456666666665555544443321   0111111246999


Q ss_pred             HHHHHHHhhhhheeee
Q 048127          235 IFYAGIVASGIVLSLQ  250 (251)
Q Consensus       235 l~ylgi~~t~~~~~l~  250 (251)
                      ++|+|+++|+++|.++
T Consensus       217 l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        217 LMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999765

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=7.8e-24  Score=178.52  Aligned_cols=207  Identities=18%  Similarity=0.161  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCh
Q 048127           14 FVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASP   93 (251)
Q Consensus        14 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a   93 (251)
                      ||.+++.+|..++++.||....+.|+..+.+++.++...+       .+++++......|.++...++.+++.|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            8999999999988778999999999999999888764321       133445557778888888999999999999999


Q ss_pred             hhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHH
Q 048127           94 TFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLF  172 (251)
Q Consensus        94 ~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l  172 (251)
                      ++++++.++.|+++.+++.+++|||++++++.|+. +++|+.+     +..++              +.++...|+.+.+
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~l-----i~~~~--------------~~~~~~~G~~~~l  134 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVL-----LLSDG--------------NLSINPAGLLLGL  134 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHh-----hccCC--------------cccccHHHHHHHH
Confidence            99999999999999999999999999999999999 9999988     54211              1123467999999


Q ss_pred             HHHHHHHHHHHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHhhhhheeee
Q 048127          173 GHCISWAGWMVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSLQ  250 (251)
Q Consensus       173 ~aa~~~A~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~t~~~~~l~  250 (251)
                      +++++|+.+.+..|+..++.+. +...+.+++.++.+.+.+.....+++. .+   ....|..+++++++++.++|.++
T Consensus       135 ~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~  209 (260)
T TIGR00950       135 GSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLW  209 (260)
T ss_pred             HHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998766532 345555788899999888877654322 11   22468889999999999988654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.91  E-value=7.6e-24  Score=182.11  Aligned_cols=223  Identities=11%  Similarity=0.030  Sum_probs=156.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ   81 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~   81 (251)
                      |++++++.+.++||++++.+|.+.++ +||..+.++|+.++.+++.++.  ++++ .++.+++    ....+.++...++
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~-~~~~~~~----~~~~~~l~~~~~~   75 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPR-LRQFPKR----YLLAGGLLFVSYE   75 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccc-cccccHH----HHHHHhHHHHHHH
Confidence            56788899999999999999999988 9999999999999999988763  1111 1122222    2334555556778


Q ss_pred             HHHHHhhhc----cChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCcccc
Q 048127           82 RFYLLGLYY----ASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYM  156 (251)
Q Consensus        82 ~~~~~~l~~----~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~  156 (251)
                      .+++.+++|    +++++++++.++.|+++.+++++++|||++++++.|+. +++|+.+     +..+++..  +.   .
T Consensus        76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~l-----i~~~~~~~--~~---~  145 (295)
T PRK11689         76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAW-----VLGGDNGL--SL---A  145 (295)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhh-----eecCCccc--hh---h
Confidence            888888765    57888899999999999999999999999999999999 9999988     55322100  00   0


Q ss_pred             C-CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHH
Q 048127          157 S-SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTI  235 (251)
Q Consensus       157 ~-~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (251)
                      + ..+..+...|+++++++++|||.|+++.||..+++ ++....   ...+.+.+.+.....++....  .+ .+.|..+
T Consensus       146 ~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~l  218 (295)
T PRK11689        146 ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMV--FS-LPAIIKL  218 (295)
T ss_pred             hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCcccc--CC-HHHHHHH
Confidence            0 00111234699999999999999999999987665 455432   223334443433333221111  11 2468888


Q ss_pred             HHHHHHhhhhheeee
Q 048127          236 FYAGIVASGIVLSLQ  250 (251)
Q Consensus       236 ~ylgi~~t~~~~~l~  250 (251)
                      +|.++ +++++|.++
T Consensus       219 ~~~~~-~t~~~~~l~  232 (295)
T PRK11689        219 LLAAA-AMGFGYAAW  232 (295)
T ss_pred             HHHHH-HHHHHHHHH
Confidence            88885 789888765

>TIGR00688 rarD rarD protein

Probab=99.89  E-value=1.3e-22  Score=171.01  Aligned_cols=217  Identities=13%  Similarity=0.051  Sum_probs=150.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCH-HHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE-----RAPLTF-SLLVQFFFLAIL   75 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~-~~~~~~~~~g~l   75 (251)
                      |+++.++.++++||.+++++|. .++ +||.++.++|+.++.+++.++...+++++     .++.++ +++......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            6788999999999999999998 466 99999999999999998887764433211     111122 223345566666


Q ss_pred             HHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCcc
Q 048127           76 GITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEH  154 (251)
Q Consensus        76 ~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~  154 (251)
                      . ..++.++++|++++++++++++.++.|+++++++++++|||++++++.++. +++|+.+     +..++         
T Consensus        80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l-----i~~~~---------  144 (256)
T TIGR00688        80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS-----NIVLK---------  144 (256)
T ss_pred             H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----HHHHc---------
Confidence            4 589999999999999999999999999999999999999999999999998 9999987     54211         


Q ss_pred             ccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHH
Q 048127          155 YMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFT  234 (251)
Q Consensus       155 ~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (251)
                           ++ .    ..+.++++++||.|.+..||..++  +........ ........+..... +.+.....+...+|..
T Consensus       145 -----~~-~----~~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  210 (256)
T TIGR00688       145 -----GS-L----PWEALVLAFSFTAYGLIRKALKNT--DLAGFCLET-LSLMPVAIYYLLQT-DFATVQQTNPFPIWLL  210 (256)
T ss_pred             -----CC-c----hHHHHHHHHHHHHHHHHHhhcCCC--CcchHHHHH-HHHHHHHHHHHHHh-ccCcccccCchhHHHH
Confidence                 11 1    135788999999999998875432  222222111 11111221111111 1111101111236888


Q ss_pred             HHHHHHHhhhhheeee
Q 048127          235 IFYAGIVASGIVLSLQ  250 (251)
Q Consensus       235 l~ylgi~~t~~~~~l~  250 (251)
                      +++.|++ +.++|.++
T Consensus       211 l~~~g~~-t~i~~~l~  225 (256)
T TIGR00688       211 LVLAGLI-TGTPLLAF  225 (256)
T ss_pred             HHHHHHH-HHHHHHHH
Confidence            8899986 78888764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.87  E-value=6.7e-21  Score=163.68  Aligned_cols=214  Identities=14%  Similarity=0.132  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ   81 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~   81 (251)
                      +++..++++++.|+++++++|.+.++ +||..+.++|+.+++++++++...  +++  +.+++++......|+.. ...+
T Consensus        12 ~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~~~-~~~~   85 (293)
T PRK10532         12 LPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGVSL-GGMN   85 (293)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHHHH-HHHH
Confidence            56788999999999999999999998 999999999999999998876422  121  23556666677778765 5677


Q ss_pred             HHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcC
Q 048127           82 RFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSK  160 (251)
Q Consensus        82 ~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (251)
                      .+++++++|+|+++++++.++.|+++.+++    +||+.+.  .++. +++|+.+     +..++           .+ .
T Consensus        86 ~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~l-----i~~~~-----------~~-~  142 (293)
T PRK10532         86 YLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWF-----LLPLG-----------QD-V  142 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHhe-----eeecC-----------CC-c
Confidence            889999999999999999999999998776    3555443  3445 7888877     54211           01 1


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHH
Q 048127          161 SQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGI  240 (251)
Q Consensus       161 ~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi  240 (251)
                      ++....|+++.++++++||.|++..||..+++ ++... .++..++++.+.+.....++. ..++   ...|..++|+|+
T Consensus       143 ~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~l~lgv  216 (293)
T PRK10532        143 SHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-ALWH---WSILPLGLAVAI  216 (293)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-ccCC---HHHHHHHHHHHH
Confidence            11235799999999999999999999987776 45554 466777888887777654321 1111   124656789999


Q ss_pred             Hhhhhheeee
Q 048127          241 VASGIVLSLQ  250 (251)
Q Consensus       241 ~~t~~~~~l~  250 (251)
                      ++|.++|.+|
T Consensus       217 ~~t~~~~~l~  226 (293)
T PRK10532        217 LSTALPYSLE  226 (293)
T ss_pred             HHHHHHHHHH
Confidence            9999999765

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=1.8e-21  Score=167.48  Aligned_cols=182  Identities=14%  Similarity=0.050  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccC--C-CCCHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKER--A-PLTFSLLVQFFFLAILGIT   78 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~l~~~   78 (251)
                      |+++.++.++++||.+++.+|.. ++ +||.++.++|+.++.+++.++...+++++.  + ..+++++. ....+.++..
T Consensus         8 ~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   84 (296)
T PRK15430          8 QGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVLIG   84 (296)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHHHH
Confidence            57788999999999999999985 55 999999999999999988877654322111  1 11334433 2335666667


Q ss_pred             HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccC
Q 048127           79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMS  157 (251)
Q Consensus        79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~  157 (251)
                      .++.++++|++++|+++++++.++.|+++.+++++++|||++++++.|++ +++|+.+     +..++            
T Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~l-----i~~~~------------  147 (296)
T PRK15430         85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLV-----QLWTF------------  147 (296)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-----HHHHc------------
Confidence            89999999999999999999999999999999999999999999999999 9999998     55211            


Q ss_pred             CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhc-CchhHHHHHHHHHHHHHH
Q 048127          158 SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKH-PAKLTLTSFTCFFRLIQF  210 (251)
Q Consensus       158 ~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~-~~~~~~~~~~~~~~~l~~  210 (251)
                        ++ .    ..+.++++++||.|++.+||..++. .+....+.+++.++....
T Consensus       148 --~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~  194 (296)
T PRK15430        148 --GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL  194 (296)
T ss_pred             --CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence              11 1    1467889999999999988764321 122334455555554443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.81  E-value=1.4e-18  Score=149.87  Aligned_cols=178  Identities=12%  Similarity=0.045  Sum_probs=147.0

Q ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhh
Q 048127           19 IVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASA   98 (251)
Q Consensus        19 ~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~   98 (251)
                      +..|.++++--+|....+.|+.++.+...+.... +.+++++.+++++++....|+++ ..++.+.+.+++|++++++++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS-GLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence            4679998864579999999999998876655211 12223456788898899999996 678899999999999999999


Q ss_pred             ccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHH
Q 048127           99 MQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCIS  177 (251)
Q Consensus        99 l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~  177 (251)
                      +.++.|+++++++++++|||++++++.|+. +++|+.+     ....               +.+....|+++.++++++
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l-----~~~~---------------~~~~~~~G~~~~l~a~~~  156 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL-----ASDT---------------ELSFNWAGFLSAMISNIT  156 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh-----hcCC---------------cccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999998 9999987     4311               111235699999999999


Q ss_pred             HHHHHHHhHhhhh--hcCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127          178 WAGWMVLQAPLLK--KHPAKLTLTSFTCFFRLIQFLAIAAFVET  219 (251)
Q Consensus       178 ~A~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  219 (251)
                      ||+|++..||..+  ++ |+...+.+++..+++.++|.....|+
T Consensus       157 ~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       157 FVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             HHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999877  55 67889999999999999999876543

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.78  E-value=1.1e-18  Score=149.05  Aligned_cols=221  Identities=11%  Similarity=0.046  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLE-KKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      ..+.+.++++|+...+..|...++ -++  ..++++..+.+.+.|+...+. ++++++.+++.+. ....+..+...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHHHH
Confidence            456788999999999999966555 344  357888888888888776532 2222333344443 44444444568999


Q ss_pred             HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCC
Q 048127           83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKS  161 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (251)
                      +++.|++++++++++.+.++.|+++.+++++++|||++++++.|+. ++.|+.+     +..++             ..+
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~l-----l~~~~-------------~~~  140 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLV-----LGLSR-------------FAQ  140 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-----Hhccc-------------ccc
Confidence            9999999999999999999999999999999999999999999998 9999987     54211             011


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCch---hHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHH
Q 048127          162 QNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAK---LTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYA  238 (251)
Q Consensus       162 ~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~yl  238 (251)
                       ....|+.+.++++++|+.|++..|+..++.++.   ...+.+++...++...+.....++..  +.. ....+..++|.
T Consensus       141 -~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~  216 (281)
T TIGR03340       141 -HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFP-YARQILPSATL  216 (281)
T ss_pred             -cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhh-hHHHHHHHHHH
Confidence             123588899999999999999977754443221   12223333333222222222112111  111 12346678899


Q ss_pred             HHHhhhhheeee
Q 048127          239 GIVASGIVLSLQ  250 (251)
Q Consensus       239 gi~~t~~~~~l~  250 (251)
                      +.++++++|.++
T Consensus       217 ~~~~s~l~~~l~  228 (281)
T TIGR03340       217 GGLMIGGAYALV  228 (281)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.76  E-value=2.1e-17  Score=145.27  Aligned_cols=178  Identities=8%  Similarity=0.025  Sum_probs=141.1

Q ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhccChh
Q 048127           18 HIVSRVALNIGVS-KVAYPVHRNIIALILLSPFAYVLEKKERAPL--TFSLLVQFFFLAILGITANQRFYLLGLYYASPT   94 (251)
Q Consensus        18 ~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~   94 (251)
                      ....|.++++ +| |..+..+|+.++.++...+.... .+++++.  ++++++.+...|+++... +...+.|+++++++
T Consensus        65 ~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs  141 (350)
T PTZ00343         65 VVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAVS  141 (350)
T ss_pred             HHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHH
Confidence            4457999988 99 99999999999988765554332 2222333  345777888899998754 45567999999999


Q ss_pred             hhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHH
Q 048127           95 FASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFG  173 (251)
Q Consensus        95 ~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~  173 (251)
                      .++++.+++|+++++++++++|||++++++.++. .++|+.+     ....               +.+....|++++++
T Consensus       142 ~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l-----~~~~---------------~~~~~~~G~~~~l~  201 (350)
T PTZ00343        142 FTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVAL-----ASVK---------------ELHFTWLAFWCAML  201 (350)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHh-----eecc---------------cchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999 9999998     5421               11123579999999


Q ss_pred             HHHHHHHHHHHhHhhhhhcC------chhHHHHHHHHHHHHHHHHHHhhee
Q 048127          174 HCISWAGWMVLQAPLLKKHP------AKLTLTSFTCFFRLIQFLAIAAFVE  218 (251)
Q Consensus       174 aa~~~A~~~v~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~  218 (251)
                      |+++||.++++.||..++.+      ++.....++.+++++.++|.....|
T Consensus       202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e  252 (350)
T PTZ00343        202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE  252 (350)
T ss_pred             HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999876532      3455566678899999999887554

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.71  E-value=6.4e-16  Score=131.53  Aligned_cols=221  Identities=20%  Similarity=0.236  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      .....+...+.|+.+....|...++..++....+.|+..+.+...+..... +.++.+.+++ +......+.++...++.
T Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~   85 (292)
T COG0697           8 GLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLE-PRGLRPALRP-WLLLLLLALLGLALPFL   85 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhh-cccccccccc-hHHHHHHHHHHHHHHHH
Confidence            346677788999999999999887635666666779999999844443221 1111111111 23355566666678999


Q ss_pred             HHHHhhhccChhhhhhccchhHHHHHHHHH-HhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcC
Q 048127           83 FYLLGLYYASPTFASAMQNSIPAVTFVMAS-SLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSK  160 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~-l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (251)
                      +++.+++++++++++.+.++.|+++.++++ +++|||++++++.+.. ++.|+.+     +..++             ..
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l-----v~~~~-------------~~  147 (292)
T COG0697          86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLL-----ILLGG-------------GG  147 (292)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHh-----eecCC-------------Cc
Confidence            999999999999999999999999999997 6779999999999988 9999998     65322             01


Q ss_pred             CCc-hHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHH-HHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHH
Q 048127          161 SQN-WTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTS-FTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYA  238 (251)
Q Consensus       161 ~~~-~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~yl  238 (251)
                      +++ ...|+.+.+.++++||.+.+..|+.. +. ++..... +++........+... .+.+   ... ....+..+.+.
T Consensus       148 ~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~~~~  220 (292)
T COG0697         148 GGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLALLLLLLFFL-SGFG---API-LSRAWLLLLYL  220 (292)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHHHHHh-cccc---ccC-CHHHHHHHHHH
Confidence            111 36899999999999999999988876 44 4455554 444422222222221 1111   111 12468899999


Q ss_pred             HHHhhhhheeee
Q 048127          239 GIVASGIVLSLQ  250 (251)
Q Consensus       239 gi~~t~~~~~l~  250 (251)
                      |++++++++.++
T Consensus       221 g~~~~~i~~~~~  232 (292)
T COG0697         221 GVFSTGLAYLLW  232 (292)
T ss_pred             HHHHHHHHHHHH
Confidence            999998877653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.62  E-value=3.2e-14  Score=123.08  Aligned_cols=197  Identities=17%  Similarity=0.182  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048127           10 LQFCFVGFHIVSRVALNIGVS-KVAYPVHRNIIALILLSPFAYVLEKK-ERAPLTFSLLVQFFFLAILGITANQRFYLLG   87 (251)
Q Consensus        10 ~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~   87 (251)
                      .+++-..+...++...++|.+ |..-.+.-+..-.++..+....++.+ +..+..++++++++..+++.. ..+++...|
T Consensus        21 lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~aN~~~v~a   99 (334)
T PF06027_consen   21 LSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EANYLVVLA   99 (334)
T ss_pred             HHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HHHHHHHHH
Confidence            344455555565555555554 44444455544444555554443322 122223345667888899985 688899999


Q ss_pred             hhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHH
Q 048127           88 LYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTW  166 (251)
Q Consensus        88 l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (251)
                      ++||+.+.+.++..+.-.++.+++++++|||.++.|++|+. ++.|+.+     +...|...   +   ++..++++...
T Consensus       100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~l-----v~~sD~~~---~---~~~~~~~~~i~  168 (334)
T PF06027_consen  100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVL-----VVVSDVLS---G---SDSSSGSNPIL  168 (334)
T ss_pred             hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh-----eeeecccc---c---ccCCCCCccch
Confidence            99999999999999988899999999999999999999998 9999887     55433211   1   01112345679


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127          167 GCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVET  219 (251)
Q Consensus       167 G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  219 (251)
                      ||++++.++++||++++..++..|+. +......+..+++.+...+.....|.
T Consensus       169 GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~  220 (334)
T PF06027_consen  169 GDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILER  220 (334)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheeh
Confidence            99999999999999999999999987 46677778888999988888777765

Some of the sequences in this family are annotated as putative membrane proteins.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.56  E-value=1.2e-15  Score=113.90  Aligned_cols=122  Identities=21%  Similarity=0.300  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048127           12 FCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYA   91 (251)
Q Consensus        12 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~   91 (251)
                      ++||...+..|...++ .||....++|+..+.+ +++.....++++.++.+++++......+.++...++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4799999999999998 9999999999999998 6666655544433455666677778888886678999999999999


Q ss_pred             ChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           92 SPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        92 ~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++++++.+.++.|+++.+++++++|||++++++.|+. .+.|+.+
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l  123 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVL  123 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987 7766654

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.52  E-value=7.5e-14  Score=101.90  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERA-PLTFSLLVQFFFLAILGITAN   80 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~   80 (251)
                      +..+..++++++||...++.|..+++ +||......|..+..+++..+....++.+.. ..++|.|......|+.+ .+.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence            45567888999999999999999988 9999999999999999999998876655432 35667777667777665 689


Q ss_pred             HHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ..+||.+++..+++...=+-.+.|+++++++++++|||++.++|+|+. -.+|+++
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            999999999999999999999999999999999999999999999988 8888876

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.47  E-value=1.4e-12  Score=108.51  Aligned_cols=211  Identities=15%  Similarity=0.142  Sum_probs=151.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccC--C-CCCHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKER--A-PLTFSLLVQFFFLAILGIT   78 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~l~~~   78 (251)
                      |+++..+.+.++||......|.. +. .|+.++...|...+..+++.+....++.+.  . ..++|.+......+.+ +.
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~   83 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IG   83 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HH
Confidence            57788899999999999999986 55 899999999999999998887776544321  1 1233445555666666 56


Q ss_pred             HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccC
Q 048127           79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMS  157 (251)
Q Consensus        79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~  157 (251)
                      .+...+.++.+.-..-++|+=.+..|++.++++.+++|||+++.|+++.. +.+|+..     .....            
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~-----~~~~~------------  146 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI-----QTWLL------------  146 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-----HHHHc------------
Confidence            89999999999999999999999999999999999999999999999998 9999998     54311            


Q ss_pred             CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHH
Q 048127          158 SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFY  237 (251)
Q Consensus       158 ~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~y  237 (251)
                        ++.+|     ..+.=|++|+.|....|+ .+ . |+.+-.+...+.-....+.+.+..++++.....+.+..+..+..
T Consensus       147 --g~lpw-----val~la~sf~~Ygl~RK~-~~-v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~  216 (293)
T COG2962         147 --GSLPW-----VALALALSFGLYGLLRKK-LK-V-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVL  216 (293)
T ss_pred             --CCCcH-----HHHHHHHHHHHHHHHHHh-cC-C-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHH
Confidence              22233     123348999999988333 33 3 34444445555555555555555554332011122345767777


Q ss_pred             HHHHh
Q 048127          238 AGIVA  242 (251)
Q Consensus       238 lgi~~  242 (251)
                      .|.++
T Consensus       217 aG~vT  221 (293)
T COG2962         217 AGLVT  221 (293)
T ss_pred             hhHHH
Confidence            77764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.35  E-value=1.4e-11  Score=105.75  Aligned_cols=179  Identities=9%  Similarity=0.043  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      .++..++++++||++++..|...  |.++.++.  |..++.+++.......++.+  +.+++.+..-+..|.+ ....+.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence            35678889999999999999865  58888876  88888887776655533211  1123322222223333 567889


Q ss_pred             HHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhcccccccc----cceeE-EEEeEEeeCCccccccccccccCCcccc
Q 048127           83 FYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGR----RDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYM  156 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~----~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~  156 (251)
                      +++.+.++++.+.+-.+.+ +.|++..+.+.+++|||.++++    ..|+. .++|+.+     ....++    +.  . 
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l-----~~~~~~----~~--~-  142 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYL-----TSRSKD----KS--A-  142 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHhe-----EEeccc----cc--c-
Confidence            9999999999999988887 8889999999999999999999    88888 8889887     542210    00  0 


Q ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHH
Q 048127          157 SSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTC  203 (251)
Q Consensus       157 ~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~  203 (251)
                      ++.+..+...|..+.++++++|+.|.+..|+.  ++ ||...++.+.
T Consensus       143 ~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~  186 (290)
T TIGR00776       143 GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQA  186 (290)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHH
Confidence            00000233579999999999999999998764  34 5676644433

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.33  E-value=8.6e-12  Score=105.02  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKV--AYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITA   79 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~--~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~   79 (251)
                      +.++..+.++++|+...+..|...++ .||.  ....+|+.++.+++.++....++.  ...+++++......+.++...
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHH
Confidence            35678889999999999999998876 6644  555578999999999887664322  223556666677788888778


Q ss_pred             HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeE
Q 048127           80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGT  133 (251)
Q Consensus        80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~  133 (251)
                      .+.+++.++++.++++++.+.++.|+++.+++++++|||++.+++.|.. .+.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999876 55543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.33  E-value=3.8e-11  Score=97.72  Aligned_cols=215  Identities=16%  Similarity=0.123  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      |+..+..++..-=....+.|..... ++|.-.+.+|..++.++++++...  .  +++.+++++..+...|.-- ...+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP--w--r~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP--W--RRRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH--H--HhccChhhhHHHHHHHHHH-HHHHH
Confidence            4667777777666777789998888 999999999999999999887422  1  2345666666677777653 46888


Q ss_pred             HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeEEEEeEEeeCCccccccccccccCCccccCCcCCC
Q 048127           83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQ  162 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  162 (251)
                      ++|.+++..|-+.+..+-.+-|+....++.    +|..-..|++. ++.|..+     +....            .+.+.
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~~d~vwvaL-AvlGi~l-----L~p~~------------~~~~~  144 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRLRDFVWVAL-AVLGIWL-----LLPLG------------QSVWS  144 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc----cchhhHHHHHH-HHHHHHh-----heecc------------CCcCc
Confidence            999999999999999999999998776553    22221223332 5667676     54221            11223


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHh
Q 048127          163 NWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVA  242 (251)
Q Consensus       163 ~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~  242 (251)
                      -+..|..+.+.+..||+.|++..||.-+.. +..+-+...+.++++..+|+.....+. .-+   .......-+-.++.+
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag~-~l~---~p~ll~laLgvavlS  219 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAGP-ALF---SPSLLPLALGVAVLS  219 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcch-hhc---ChHHHHHHHHHHHHh
Confidence            457899999999999999999988866543 445556788999999999998754321 111   123344556788899


Q ss_pred             hhhheeee
Q 048127          243 SGIVLSLQ  250 (251)
Q Consensus       243 t~~~~~l~  250 (251)
                      |.+-|.++
T Consensus       220 SalPYsLE  227 (292)
T COG5006         220 SALPYSLE  227 (292)
T ss_pred             cccchHHH
Confidence            99888764

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.21  E-value=2.5e-12  Score=105.29  Aligned_cols=217  Identities=17%  Similarity=0.194  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048127            9 ALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGL   88 (251)
Q Consensus         9 ~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l   88 (251)
                      ..+.++.+..++.|..++  .+|......|+..-.+.-.|.....+..-..+.++|.  ++...|+.|. ......|+++
T Consensus        44 ~vs~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~--~LiLRg~mG~-tgvmlmyya~  118 (346)
T KOG4510|consen   44 TVSYFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRK--WLILRGFMGF-TGVMLMYYAL  118 (346)
T ss_pred             hhHHHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEE--EEEeehhhhh-hHHHHHHHHH
Confidence            344777777777776664  5899999999555544444433332111111112222  2566788885 4667889999


Q ss_pred             hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe-eCCccccccccccccCCccccCCcCCCchHH
Q 048127           89 YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA-KCPPLLHQVTHATYLEPEHYMSSSKSQNWTW  166 (251)
Q Consensus        89 ~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (251)
                      +|.+-++|+++..+.|++|++++|.++|||.++...++.. .+.|+++ .-+.++. +++   .+|+   +++..+....
T Consensus       119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlF-G~~---t~g~---~~s~~~~~~~  191 (346)
T KOG4510|consen  119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLF-GDT---TEGE---DSSQVEYDIP  191 (346)
T ss_pred             hhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCccc-CCC---cccc---ccccccccCC
Confidence            9999999999999999999999999999999999999998 9999999 2222222 111   1121   1111123456


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceec-cCchHHHHHHHHHHh
Q 048127          167 GCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQ-SGEELFTIFYAGIVA  242 (251)
Q Consensus       167 G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ylgi~~  242 (251)
                      |....+.++++.|--.++.|+.-|+. +....+.+..+++.+..+......+    .|..+ ...+|+....+|+++
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvfg  263 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVFG  263 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhhh
Confidence            78888888887776666667755654 4222233444555554444333221    12211 234555555566543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.20  E-value=7.2e-11  Score=101.09  Aligned_cols=160  Identities=11%  Similarity=0.126  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccc
Q 048127           77 ITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHY  155 (251)
Q Consensus        77 ~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~  155 (251)
                      .+..++++..++.+|+++..+++.++.-+||..++..+..||.+..+.++.. .+.|+++     +...+++-   +   
T Consensus       169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GVii-----Vt~~~s~~---~---  237 (416)
T KOG2765|consen  169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVII-----VTMGDSKQ---N---  237 (416)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEE-----EEeccccc---c---
Confidence            4577889999999999999999999999999999999999999999999998 9999999     76543210   0   


Q ss_pred             cCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC---chhHHHHHHHHHHHHHHHHHHhheeC-CcccceeccCch
Q 048127          156 MSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP---AKLTLTSFTCFFRLIQFLAIAAFVET-DINRWKIQSGEE  231 (251)
Q Consensus       156 ~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~  231 (251)
                       ++........|+++.+++|+.||+|+++.||...+..   |....-.+..++..+++.|..++.+. ....++++...+
T Consensus       238 -~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q  316 (416)
T KOG2765|consen  238 -SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQ  316 (416)
T ss_pred             -ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCce
Confidence             1112234579999999999999999999998877652   22222334444555555555544311 011223333334


Q ss_pred             HHHHHHHHHHhhhhhee
Q 048127          232 LFTIFYAGIVASGIVLS  248 (251)
Q Consensus       232 ~~~l~ylgi~~t~~~~~  248 (251)
                      ...++..+.++|.++-.
T Consensus       317 ~~~vv~~~ligtvvSDy  333 (416)
T KOG2765|consen  317 FSLVVFNNLIGTVVSDY  333 (416)
T ss_pred             eEeeeHhhHHHHHHHHH
Confidence            55566666767666543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.17  E-value=6.3e-12  Score=92.80  Aligned_cols=99  Identities=15%  Similarity=0.232  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHH
Q 048127           36 VHRNIIALILLSPFAYVLEKKE--RAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASS  113 (251)
Q Consensus        36 ~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l  113 (251)
                      .+|+..+.+.+..+...+++.+  .+..+++.+.+....|.++...++.++++|+++++ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5899999999998887754322  12233444555666687776688999999999999 58889999999999999999


Q ss_pred             hhcccccccccceeE-EEEeEEe
Q 048127          114 LRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus       114 ~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++|||++++++.+.. +++|+++
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~l  103 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVIL  103 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999998 9999998

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.01  E-value=1.8e-09  Score=92.80  Aligned_cols=129  Identities=13%  Similarity=0.105  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      +.+..+.++++|+...+..|...++ .+|....... .++++.+.++......  ....+...+......|+++..+.+.
T Consensus       149 G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~~  224 (293)
T PRK10532        149 GAALALGAGACWAIYILSGQRAGAE-HGPATVAIGS-LIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPYS  224 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHH-HHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999998766 7887775544 5666667776654321  1123444444456788888889999


Q ss_pred             HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++++++++.++++++.+.+++|+++.++++++++|+++..+++|.. -+.|++.
T Consensus       225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~  278 (293)
T PRK10532        225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMG  278 (293)
T ss_pred             HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987 5655555

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.00  E-value=1.5e-09  Score=93.22  Aligned_cols=131  Identities=15%  Similarity=0.085  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      ..+..+.++++|+...+..|...++  ++.....+++.++++.+.++....+.......+.+.+......++++....+.
T Consensus       151 G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~  228 (292)
T PRK11272        151 GAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAIS  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            5677888999999999999886433  45667788999999988887654322211122456677778889888888999


Q ss_pred             HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++++++++.++++++.+.+++|++++++++++++|+++..+++|.. -+.|+.+
T Consensus       229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~  282 (292)
T PRK11272        229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVL  282 (292)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987 6666655

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.00  E-value=1.9e-08  Score=86.92  Aligned_cols=172  Identities=15%  Similarity=0.091  Sum_probs=130.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHH
Q 048127           31 KVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVM  110 (251)
Q Consensus        31 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll  110 (251)
                      |..+.+..+....+.-.+.....++++.++.+   +..+...+++. .+...+.+.+++|.|...-.+.-+..|+.++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~  107 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFPKSRKIP---LKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMIL  107 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccccCCCcCh---HHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence            78899999998888776665443312222333   34456677775 478899999999999999999999999999999


Q ss_pred             HHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 048127          111 ASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLL  189 (251)
Q Consensus       111 ~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~  189 (251)
                      +.+++|||.+++++.+.. -.+|+++     ....+.....+     ......++..|+.+.+++.++-|...+.++|..
T Consensus       108 ~~l~~~k~y~~~~~~~v~li~~Gv~~-----~~~~~~~~~~~-----~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~  177 (303)
T PF08449_consen  108 GVLILGKRYSRRQYLSVLLITIGVAI-----FTLSDSSSSSS-----SNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF  177 (303)
T ss_pred             HHHhcCccccHHHHHHHHHHHhhHhe-----eeecccccccc-----cccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988 8888887     44332111000     011112234599999999999999999999998


Q ss_pred             hhcC-chhHHHHHHHHHHHHHHHHHHhh
Q 048127          190 KKHP-AKLTLTSFTCFFRLIQFLAIAAF  216 (251)
Q Consensus       190 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~  216 (251)
                      ++++ ++...+++..+++.+..++....
T Consensus       178 ~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  178 KKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            8775 36788899999999988887776

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.82  E-value=1.7e-08  Score=86.94  Aligned_cols=127  Identities=11%  Similarity=0.119  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQR   82 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~   82 (251)
                      +.++.+.++++|+...+..|...++ .++....   +..+.+.+.+.....+ ......+.+.+......++ ...+.+.
T Consensus       157 G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~~~  230 (295)
T PRK11689        157 SYGLAFIGAFIWAAYCNVTRKYARG-KNGITLF---FILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFGYA  230 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC-CCchhHH---HHHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHHHH
Confidence            4567889999999999999997655 7876543   2334444444333322 1112245555655666664 4568899


Q ss_pred             HHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           83 FYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        83 ~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++++++++.++++++.+.+++|++.+++++++++|+++..+++|.+ -+.|+.+
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~  284 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLL  284 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999999999987 6666655

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.79  E-value=1.2e-07  Score=79.17  Aligned_cols=150  Identities=13%  Similarity=0.074  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCcc
Q 048127           62 TFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPL  140 (251)
Q Consensus        62 ~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~  140 (251)
                      ++|+...+..-+++. ..++.+.+.++++.+|+.-.++..+-.++|++++++++|+|++++||.++. -.+|+.+     
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~l-----   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVL-----   86 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHhe-----
Confidence            456667788889886 589999999999999999999999999999999999999999999999998 7788887     


Q ss_pred             ccccccccc--cCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHhhe
Q 048127          141 LHQVTHATY--LEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFV  217 (251)
Q Consensus       141 ~~~~~~~~~--~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~  217 (251)
                      ...+++...  .+.+......++.+...|.++++.++++-++..++.+|..|+.+. ....+..-.++|.+..++.....
T Consensus        87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~  166 (244)
T PF04142_consen   87 VQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS  166 (244)
T ss_pred             eecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            322111000  000000000112345789999999999999999999999988643 23333344455555555554443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.76  E-value=8.2e-07  Score=76.39  Aligned_cols=178  Identities=15%  Similarity=0.099  Sum_probs=137.1

Q ss_pred             HHHHHh--cCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhh
Q 048127           21 SRVALN--IGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASA   98 (251)
Q Consensus        21 ~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~   98 (251)
                      .|..++  +.--|..+...++..+.+.+......+..+..+..++..+..++-+|+.. ++...+-..+++|.+.+..-.
T Consensus        36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHHH
Confidence            577777  43458888888888888777766554332222212333455677778875 578889999999999999999


Q ss_pred             ccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHH
Q 048127           99 MQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCIS  177 (251)
Q Consensus        99 l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~  177 (251)
                      +=.++|.++.++++++.+|+.++.....+. -..|+.+     -..              +..+. +..|....+++.+.
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i-----as~--------------~e~~f-n~~G~i~a~~s~~~  174 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI-----ASV--------------TELSF-NLFGFISAMISNLA  174 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE-----eee--------------ccccc-cHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 8888888     432              11122 35899999999999


Q ss_pred             HHHHHHHhHhhhhh--c-CchhHHHHHHHHHHHHHHH-HHHhheeC
Q 048127          178 WAGWMVLQAPLLKK--H-PAKLTLTSFTCFFRLIQFL-AIAAFVET  219 (251)
Q Consensus       178 ~A~~~v~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~-~~~~~~~~  219 (251)
                      .+..+++.|+..++  . -|+..+..++.-++...++ |.....|+
T Consensus       175 ~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~  220 (316)
T KOG1441|consen  175 FALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG  220 (316)
T ss_pred             HHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc
Confidence            99999999998842  2 1578888888888888888 77776554

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.74  E-value=1.8e-08  Score=86.10  Aligned_cols=130  Identities=13%  Similarity=-0.037  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVA----YPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGIT   78 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~----~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~   78 (251)
                      .....+.++++|+...+..|...++ .+|..    ...+.+...++.+.+....++++. ...+...+......+.+...
T Consensus       145 g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~  222 (281)
T TIGR03340       145 AYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLMIG  222 (281)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHH
Confidence            3456778889999999998876443 45432    223333333222222221111111 11122223334556666666


Q ss_pred             HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEE
Q 048127           79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTI  134 (251)
Q Consensus        79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~  134 (251)
                      ..+.++++++++.+++.++.+.+++|++..+++++++||+++..+++|.. .+.|+.
T Consensus       223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~  279 (281)
T TIGR03340       223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLV  279 (281)
T ss_pred             HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHH
Confidence            88999999999999999999999999999999999999999999999977 666654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.69  E-value=8.3e-08  Score=84.63  Aligned_cols=128  Identities=14%  Similarity=0.104  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHHHhhhccC-C---CCCHHHHHHHHHHHHHHHHH
Q 048127            5 MALLALQFCFVGFHIVSRVALNIGVSKV-AYPVHRNIIALILLSPFAYVLEKKER-A---PLTFSLLVQFFFLAILGITA   79 (251)
Q Consensus         5 ~~ll~~~~~wg~~~~~~k~~~~~~~~p~-~~~~~R~~~a~l~l~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~l~~~~   79 (251)
                      ++++.++++|+...+..|...++ .||. ...++...++.+.+.+.....++.+. .   ..+... ......++. ..+
T Consensus       192 ~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~-t~l  268 (358)
T PLN00411        192 ALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAII-TSV  268 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHH-HHH
Confidence            56778899999999999988776 6554 55667777777766655554332211 1   122222 224444544 457


Q ss_pred             HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .+.++++++++.+|+.++...++.|++++++++++++|+++..+++|.+ -+.|+.+
T Consensus       269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l  325 (358)
T PLN00411        269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYA  325 (358)
T ss_pred             HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999988 7777777

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.69  E-value=1e-07  Score=82.17  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSK---VAYPVHRNIIALILLSPFAYVLEKKE-----RAPLTFSLLVQFFFLAI   74 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p---~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~   74 (251)
                      ..++.+.++++|+...+..|...++ .++   .....+-...+.+.+.......+...     ....+.+.+......|+
T Consensus       144 G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i  222 (299)
T PRK11453        144 GFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence            4567888999999999999987654 332   23333334444333333322222111     11345567777888999


Q ss_pred             HHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           75 LGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        75 l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++....+.+++.++++.++++++.+.+++|++..++++++++|+++..+++|.. -+.|+.+
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l  284 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYI  284 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence            998899999999999999999999999999999999999999999999999987 6666665

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.63  E-value=3.5e-08  Score=85.10  Aligned_cols=133  Identities=20%  Similarity=0.184  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHhhhccCCC---------CCH-HHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNI-GVSKVAYPVHRNIIALILLSPFAYVLEKKERAP---------LTF-SLLVQFFF   71 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---------~~~-~~~~~~~~   71 (251)
                      +.+..+.+++.|+...+..|...++ +.||.....+-...+.+.+.|+....+......         ... ..+.....
T Consensus       146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (302)
T TIGR00817       146 GFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLV  225 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHH
Confidence            4567888999999999999988761 389999999999999999999876543111000         000 11111122


Q ss_pred             HHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           72 LAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        72 ~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .+.......+.+++.+++++++..+++..++.|++++++++++++|+++..+++|.. .+.|+.+
T Consensus       226 ~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l  290 (302)
T TIGR00817       226 AAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL  290 (302)
T ss_pred             HHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence            222222234467778999999999999999999999999999999999999999988 8888776

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.45  E-value=1.2e-06  Score=67.59  Aligned_cols=131  Identities=15%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHHHHHHhhhccC-C---CC-------CHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALNI------GVSKVAYPVHRNIIALILLSPFAYVLEKKER-A---PL-------TFSLL   66 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~---~~-------~~~~~   66 (251)
                      ++..+.+.++-+...+..|...++      +.++.....+-...+.+.++|.....++.+. +   ..       +.+.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence            456778899999999999888766      6899999999999999999999888654431 1   01       22344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           67 VQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        67 ~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ..+...|+++ ...+...+..+++++|...++....-.+.+.++++++++|+++.+++.|+. ++.|...
T Consensus        82 ~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   82 FLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            5555667776 478899999999999999999999999999999999999999999999998 8888765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.37  E-value=1.8e-06  Score=73.27  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPV-HRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITAN   80 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~   80 (251)
                      +...+.+.+++.|+.+.+..|... + .++..... +.+........+...  .... ...+.+.+......|+++....
T Consensus       154 ~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~i~  228 (292)
T COG0697         154 LGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTGLA  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHHHH
Confidence            356778889999999999998776 4 67777776 444422222222211  1111 2345566777788888887678


Q ss_pred             HHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      +.+++.++++.+++.++.+.++.|++..++++++++|+++.+++.|.. -+.|+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l  284 (292)
T COG0697         229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLL  284 (292)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999976 5555554

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.34  E-value=2.4e-06  Score=75.32  Aligned_cols=133  Identities=13%  Similarity=0.076  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHHHHHHhhhccC-----------CCCCHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNI------GVSKVAYPVHRNIIALILLSPFAYVLEKKER-----------APLTFSL   65 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----------~~~~~~~   65 (251)
                      +.+..++++++|+...+..|...++      ..++.....+-...+.++++|+....+..+.           .......
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~  274 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGI  274 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHH
Confidence            5677888999999999999998764      1456656666678899999998764321110           0001111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           66 LVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        66 ~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .........+...+++.+.+.+++++++.++++..++.|++++++++++++|+++..+++|.+ .+.|+.+
T Consensus       275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            111111222222344445557999999999999999999999999999999999999999988 8777765

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.32  E-value=0.00013  Score=63.04  Aligned_cols=204  Identities=12%  Similarity=0.035  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHHHHhhhc----cCCCC------CHHHHHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALNIG---VSKVAYPVHRNIIALILLSPFAYVLEKK----ERAPL------TFSLLVQFF   70 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~~------~~~~~~~~~   70 (251)
                      ++.++...+-++..-+..|..-.++   ..|...++.-=.+-.++-..+.++..|+    ..+.+      .+++...+.
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~   96 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS   96 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence            4566777788888888999887665   5566666666566666555555544211    11111      333445566


Q ss_pred             HHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccc
Q 048127           71 FLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATY  149 (251)
Q Consensus        71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~  149 (251)
                      .-+++. ++++.++|.++.+.+|+.-.+...+--+-|+++..+++++|.+++||.++. -.+|+.+     +-.+.  ..
T Consensus        97 vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~-----vQ~~~--~~  168 (345)
T KOG2234|consen   97 VPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVAL-----VQLPS--LS  168 (345)
T ss_pred             HHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-----HhccC--CC
Confidence            667776 578889999999999999999999999999999999999999999999998 8888887     32100  00


Q ss_pred             cCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCch-hHHHHHHHHHHHHHHHHHHhhe
Q 048127          150 LEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAK-LTLTSFTCFFRLIQFLAIAAFV  217 (251)
Q Consensus       150 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~  217 (251)
                      +.+ .. .+..+.+..+|...++.+++.-++..++..+.+|+-..+ ..-+.--.++|.+..+...+..
T Consensus       169 ~~~-a~-~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~  235 (345)
T KOG2234|consen  169 PTG-AK-SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ  235 (345)
T ss_pred             CCC-cc-CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            001 00 112234567999999999999999999999988764222 2222222334444444444443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.28  E-value=2.7e-06  Score=73.02  Aligned_cols=124  Identities=10%  Similarity=0.118  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH---HHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNI---IALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGIT   78 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~   78 (251)
                      |.....+.+++.++...+..|..  + .||....+....   +++.++.+..  +  +.++..++. .......|++ ..
T Consensus       152 ~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~--~~~~~~~~~-~~~~~~~Gi~-~~  222 (290)
T TIGR00776       152 KGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I--LAKPLKKYA-ILLNILPGLM-WG  222 (290)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h--cccchHHHH-HHHHHHHHHH-HH
Confidence            56778888999999999999975  3 788888554444   3444333322  1  112222223 3334457877 57


Q ss_pred             HHHHHHHHhhh-ccChhhhhhccchhHHHHHHHHHHhhccccccccc----ceeE-EEEeEE
Q 048127           79 ANQRFYLLGLY-YASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRR----DGFA-KVLGTI  134 (251)
Q Consensus        79 ~~~~~~~~~l~-~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~----~g~~-~~~G~~  134 (251)
                      ..+.+++.+.+ +.+++.++.+.+..|+...+.+.+++||+.+++++    +|.+ -+.|+.
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~  284 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAAN  284 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHH
Confidence            88899999999 99999999999999999999999999999999998    7765 444443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.27  E-value=6.6e-07  Score=73.44  Aligned_cols=165  Identities=13%  Similarity=0.127  Sum_probs=121.1

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHH
Q 048127           30 SKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFV  109 (251)
Q Consensus        30 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~l  109 (251)
                      .|..=.|.-+..-.++-.|+..+|+ +   .++ ..|.+++..++... -.+++.-.|.|||+-+.+.++-.-.-..+.+
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~-~---~~~-~~~~hYilla~~DV-EaNy~vV~AyQyTsmtSi~lLDcwaip~v~~  120 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRR-K---YIK-AKWRHYILLAFVDV-EANYFVVKAYQYTSMTSIMLLDCWAIPCVLV  120 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhh-H---HHH-HHHHHhhheeEEee-cccEEEeeehhhcchHHHHHHHHhhhHHHHH
Confidence            3556667777777777777777743 2   111 22445777788775 4556777899999998888886654445678


Q ss_pred             HHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhh
Q 048127          110 MASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPL  188 (251)
Q Consensus       110 l~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~  188 (251)
                      ++|+++|.|.++.++.|.+ ++.|+..     +..+|-+  . |    +..++.+-..||.+++++|-+||+.++.....
T Consensus       121 lsw~fLktrYrlmki~gV~iCi~Gvvm-----vV~sDV~--a-g----d~aggsnp~~GD~lvi~GATlYaVSNv~EEfl  188 (336)
T KOG2766|consen  121 LSWFFLKTRYRLMKISGVVICIVGVVM-----VVFSDVH--A-G----DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFL  188 (336)
T ss_pred             HHHHHHHHHHhhheeeeEEeEecceEE-----EEEeeec--c-c----cccCCCCCccCcEEEEecceeeeeccccHHHH
Confidence            9999999999999999999 9999999     5433310  0 2    22333455789999999999999999998888


Q ss_pred             hhhcCchhHHHHHHHHHHHHHHHHH
Q 048127          189 LKKHPAKLTLTSFTCFFRLIQFLAI  213 (251)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~~~  213 (251)
                      .||. |...++..-.++|++....=
T Consensus       189 vkn~-d~~elm~~lgLfGaIIsaIQ  212 (336)
T KOG2766|consen  189 VKNA-DRVELMGFLGLFGAIISAIQ  212 (336)
T ss_pred             HhcC-cHHHHHHHHHHHHHHHHHHH
Confidence            8887 55666677778888887665

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.22  E-value=2e-05  Score=67.91  Aligned_cols=127  Identities=16%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048127            6 ALLALQFCFVGFHIVSRVALNIG-VSKVAYPVHRNIIALILLSPFAYVLEKKE-RAPLTFSLLVQFFFLAILGITANQRF   83 (251)
Q Consensus         6 ~ll~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~   83 (251)
                      ..+.++++|+.+.+..|...++. .++.....+-..++.+...+..  ..... ....+...+......|+. ....+.+
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~  229 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIV-TTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence            45678899999999988864321 1122223333334333322221  11010 111122222333444544 4578999


Q ss_pred             HHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           84 YLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        84 ~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++.++++.+++.++.+.+++|++..++++++++|+++..++.|.. -+.|+.+
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v  282 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI  282 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877 5445444

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.16  E-value=1.7e-05  Score=66.19  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHH---hcCCC----ccHHHHHHHHHHHHHHHHHHHHhhhccCCC-------------CCHHHHHHHHHHHH
Q 048127           15 VGFHIVSRVAL---NIGVS----KVAYPVHRNIIALILLSPFAYVLEKKERAP-------------LTFSLLVQFFFLAI   74 (251)
Q Consensus        15 g~~~~~~k~~~---~~~~~----p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~   74 (251)
                      +.+-+.+|.+-   ++|-|    |...+..-|+.-..++..+.+.+.|...+.             .+.+. ...+.-++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal   94 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPAL   94 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHH
Confidence            34556677764   23333    455555555555566666655554332110             01221 12233455


Q ss_pred             HHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCc
Q 048127           75 LGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPE  153 (251)
Q Consensus        75 l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~  153 (251)
                      ..+ ....+.+.|+.+|+++.-..+-...-+|+.+++.-+++++++.++|+|+. -.+|.+++|..=+...+     +  
T Consensus        95 ~Di-~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~-----~--  166 (372)
T KOG3912|consen   95 CDI-AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT-----D--  166 (372)
T ss_pred             HHH-hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-----C--
Confidence            554 56778999999999999999999999999999999999999999999998 88888883222111000     0  


Q ss_pred             cccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC-chhHHHHHHHHHHHH
Q 048127          154 HYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP-AKLTLTSFTCFFRLI  208 (251)
Q Consensus       154 ~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~-~~~~~~~~~~~~~~l  208 (251)
                         ....-++...|+++.+++-+.-|+.+++-.|..+++. +|...+.|+-++|.+
T Consensus       167 ---p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v  219 (372)
T KOG3912|consen  167 ---PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLV  219 (372)
T ss_pred             ---CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHH
Confidence               0011124568999999999999999999888877753 589999999988844

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.12  E-value=2e-06  Score=63.06  Aligned_cols=65  Identities=22%  Similarity=0.095  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           71 FLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ..++.+....+.++..++++.|.+.+..+.++.|+++.+++++++|||++.++++|+. .++|++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            3444666788999999999999999999989999999999999999999999999998 8877765

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.00017  Score=61.42  Aligned_cols=213  Identities=12%  Similarity=0.147  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048127           11 QFCFVGFHIVSRVALNIGVSKVAYPV--HRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGL   88 (251)
Q Consensus        11 ~~~wg~~~~~~k~~~~~~~~p~~~~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l   88 (251)
                      ++.--.+-++.|.++..-=-|..+..  .+.+...+.+...-.. +--+.++++++..+..+-..++- .+....-..++
T Consensus        21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~sl   98 (314)
T KOG1444|consen   21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSL   98 (314)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH-HHHHHHccccc
Confidence            33334455667888866222444443  7777777766544211 11123456777777777777774 46777778999


Q ss_pred             hccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHH
Q 048127           89 YYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWG  167 (251)
Q Consensus        89 ~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  167 (251)
                      +|.+...-+++-...|+++++...+++|.|++.+.+.+.. -.+|...     ...++              .+ -...|
T Consensus        99 k~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~-----~~~~d--------------~s-f~~~g  158 (314)
T KOG1444|consen   99 KYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVA-----AAFTD--------------LS-FNLRG  158 (314)
T ss_pred             cccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHh-----hcccc--------------ce-ecchh
Confidence            9999999999999999999999999999999999998876 5555444     22111              11 12348


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhcC-chhHHHHHHHHHHHHHHHHHHhheeCCc------ccceeccCchHHHHHHHHH
Q 048127          168 CIFLFGHCISWAGWMVLQAPLLKKHP-AKLTLTSFTCFFRLIQFLAIAAFVETDI------NRWKIQSGEELFTIFYAGI  240 (251)
Q Consensus       168 ~ll~l~aa~~~A~~~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~ylgi  240 (251)
                      ..+++...+.-+.+.+..|+..+.-. +...++++..+.+...+....++.++..      ..|.-  ...+..+..-++
T Consensus       159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv  236 (314)
T KOG1444|consen  159 YSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCV  236 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHH
Confidence            99999999999999999888765431 2456788898998888888887765411      11110  123556666666


Q ss_pred             Hhhhhhe
Q 048127          241 VASGIVL  247 (251)
Q Consensus       241 ~~t~~~~  247 (251)
                      ++-++.|
T Consensus       237 ~gf~isy  243 (314)
T KOG1444|consen  237 MGFGISY  243 (314)
T ss_pred             HHHHHHH
Confidence            6555544

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.96  E-value=2.6e-05  Score=58.71  Aligned_cols=116  Identities=17%  Similarity=0.109  Sum_probs=87.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 048127            1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITAN   80 (251)
Q Consensus         1 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~   80 (251)
                      |++++..+...++-+..-++-|...++ .+....... . ...+..     .   .    .+    ......|+....+.
T Consensus         1 ~~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~~-----~---~----~p----~~~i~lgl~~~~la   61 (129)
T PRK02971          1 MMGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALLA-----F---G----LA----LRAVLLGLAGYALS   61 (129)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHHH-----H---h----cc----HHHHHHHHHHHHHH
Confidence            678888888888889999999999877 554432221 1 000000     0   0    01    11456777777889


Q ss_pred             HHHHHHhhhccChhhhhhccchhHHHHHHHHHH--hhcccccccccceeE-EEEeEEe
Q 048127           81 QRFYLLGLYYASPTFASAMQNSIPAVTFVMASS--LRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        81 ~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l--~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      +.++..++++.+++.+.-+.+..+..+.+.++.  ++||+++.++++|+. -++|+.+
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~l  119 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWL  119 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888888888874  899999999999998 8888777

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00013  Score=60.16  Aligned_cols=122  Identities=14%  Similarity=0.074  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRF   83 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~   83 (251)
                      ..+.+.+..+|...-+..|.+-+. .|-..-+..-+.++.++.+|+-.-..  ...-.+++....-...+++...++|.+
T Consensus       150 v~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~a--g~~l~~p~ll~laLgvavlSSalPYsL  226 (292)
T COG5006         150 VALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQA--GPALFSPSLLPLALGVAVLSSALPYSL  226 (292)
T ss_pred             HHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhc--chhhcChHHHHHHHHHHHHhcccchHH
Confidence            356677899999999999887644 56666677889999999999865321  111234555555567788888899999


Q ss_pred             HHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE
Q 048127           84 YLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA  128 (251)
Q Consensus        84 ~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~  128 (251)
                      ...+++..|...-+++.+++|.+.++.++++++|+++..||+++.
T Consensus       227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~  271 (292)
T COG5006         227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIA  271 (292)
T ss_pred             HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999864

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.64  E-value=0.00029  Score=55.99  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=82.5

Q ss_pred             HHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccC
Q 048127           79 ANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMS  157 (251)
Q Consensus        79 ~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~  157 (251)
                      ..++.|..+++..++++++.+....-.++.++++..++||+...++++.. ++-|++.     +..-|            
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVm-----iay~D------------  127 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVM-----IAYAD------------  127 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEE-----EEecc------------
Confidence            56778999999999999999999999999999999999999999999988 9999888     65322            


Q ss_pred             CcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 048127          158 SSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKH  192 (251)
Q Consensus       158 ~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~  192 (251)
                       .+..+...|+.+...+++.-|+|-+.-|+...+.
T Consensus       128 -N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  128 -NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             -chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence             1223456899999999999999999988877653

>TIGR00688 rarD rarD protein

Probab=97.53  E-value=0.0024  Score=53.59  Aligned_cols=105  Identities=10%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 048127            6 ALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERA-PLTFSLLVQFFFLAILGITANQRFY   84 (251)
Q Consensus         6 ~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~~~~~   84 (251)
                      ..+.++++|+...+..|...++  ++......-.. ......+........... ..+.+++......|+. ....+.++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~  225 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHH
Confidence            4567889999999999886443  33332222211 111111111111111001 1223467767777877 56899999


Q ss_pred             HHhhhccChhhhhhccchhHHHHHHHHHHh
Q 048127           85 LLGLYYASPTFASAMQNSIPAVTFVMASSL  114 (251)
Q Consensus        85 ~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~  114 (251)
                      +.++++.+++.++.+.+++|+++.+++.+.
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0017  Score=54.27  Aligned_cols=199  Identities=13%  Similarity=0.018  Sum_probs=118.5

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhhc----cCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchh
Q 048127           30 SKVAYPVHRNIIALILLSPFAYVLEKK----ERAP--LTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQNSI  103 (251)
Q Consensus        30 ~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~--~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~  103 (251)
                      .|..+.++.-++...+-+.+.....+-    ..++  ++.+...++.-..+.- .+...+-..+++|.+.+.--+=-++.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence            366666666666555544433222211    1111  2222222222223221 12333446777888776655555788


Q ss_pred             HHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCC-cCCCchHHHHHHHHHHHHHHHHH
Q 048127          104 PAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSS-SKSQNWTWGCIFLFGHCISWAGW  181 (251)
Q Consensus       104 Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~A~~  181 (251)
                      -+|+.++.++++|||-+..-..+.. -+.|-.+      ..            +++ ..+.-...|.++...|.++-|++
T Consensus       139 tvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l------Gv------------dqE~~~~~ls~~GvifGVlaSl~vAln  200 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL------GV------------DQEGSTGTLSWIGVIFGVLASLAVALN  200 (347)
T ss_pred             hhHHHHhHHhhcccccccccceeehhheehhee------cc------------ccccccCccchhhhHHHHHHHHHHHHH
Confidence            8899999999999998766655555 3333222      11            111 11222358999999999999999


Q ss_pred             HHHhHhhhhhcCc-hhHHHHHHHHHHHHHHHHHHhheeCCcccce---eccCchHHHHHHHHHHhhhhhe
Q 048127          182 MVLQAPLLKKHPA-KLTLTSFTCFFRLIQFLAIAAFVETDINRWK---IQSGEELFTIFYAGIVASGIVL  247 (251)
Q Consensus       182 ~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ylgi~~t~~~~  247 (251)
                      .+..||......| -..++.+..+.+.++++|...+.++-...+.   ......|..+..-|+++=.++|
T Consensus       201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy  270 (347)
T KOG1442|consen  201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY  270 (347)
T ss_pred             HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence            9998876655444 5678899999999999998877543111222   1112346666767777666655

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.47  E-value=0.00053  Score=59.82  Aligned_cols=132  Identities=11%  Similarity=0.021  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPL--TFSLLVQFFFLAILGITA   79 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~~   79 (251)
                      ++.+.++.+++++|.+.+.-|...++ .|+..+..+=-+++.++..+.....++++..+.  +.+... +.....+....
T Consensus       168 ~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~-~~v~~~~~lf~  245 (334)
T PF06027_consen  168 LGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIG-LLVGYALCLFL  245 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHH-HHHHHHHHHHH
Confidence            45788899999999999999998887 888888877777777777777666565553333  333332 22223333344


Q ss_pred             HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .+.+.-..+++++|+...+=.-+..++..+++.+++|+++++..++|.+ -++|.++
T Consensus       246 ~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vv  302 (334)
T PF06027_consen  246 FYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVV  302 (334)
T ss_pred             HHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhhe
Confidence            5556667888998887777566788899999999999999999999987 7778777

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.23  E-value=0.0026  Score=53.95  Aligned_cols=139  Identities=12%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeC
Q 048127           60 PLTFSLLV-QFFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKC  137 (251)
Q Consensus        60 ~~~~~~~~-~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g  137 (251)
                      ...|++.. +..-+|+. .+.--.+..++++|++.+.-+..=+..++|+.+++..+.-||.++.-..-.. -..|+.+  
T Consensus        77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glfl--  153 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFL--  153 (349)
T ss_pred             CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeE--
Confidence            35665543 33334444 3566778899999999999999999999999999999999998877655444 4455555  


Q ss_pred             CccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC----chhHHHHHHHHHHHHHHHHH
Q 048127          138 PPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP----AKLTLTSFTCFFRLIQFLAI  213 (251)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~  213 (251)
                         ....               +.+-...|-.++..+.++-++-=...++.++|.|    +|....+...-...+.++|.
T Consensus       154 ---ft~K---------------sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~  215 (349)
T KOG1443|consen  154 ---FTYK---------------STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPL  215 (349)
T ss_pred             ---EEec---------------ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHH
Confidence               4421               1112346777777766665555444444455543    36665655556667777777


Q ss_pred             HhheeC
Q 048127          214 AAFVET  219 (251)
Q Consensus       214 ~~~~~~  219 (251)
                      .+.+|+
T Consensus       216 ~l~fEG  221 (349)
T KOG1443|consen  216 SLLFEG  221 (349)
T ss_pred             HHHHcc
Confidence            777665

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.00046  Score=56.40  Aligned_cols=163  Identities=8%  Similarity=0.000  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccc
Q 048127           69 FFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHA  147 (251)
Q Consensus        69 ~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~  147 (251)
                      +..+++- ..+.+.....+++|.|=-...+=-+.-|+-+++++.++.|++.++++-.... -++|+++     ....++.
T Consensus        88 YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GVal-----FmYK~~K  161 (337)
T KOG1580|consen   88 YAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVAL-----FMYKENK  161 (337)
T ss_pred             HHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHH-----hhccccc
Confidence            4445544 3567788889999998777767678889999999999999999999998887 8888887     4432211


Q ss_pred             cccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcC-chhHHHHHHHHHHHHHHHHHHhheeCCcc--cc
Q 048127          148 TYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHP-AKLTLTSFTCFFRLIQFLAIAAFVETDIN--RW  224 (251)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~  224 (251)
                              ....++.+..+|+++.+++--.=+.-...|.|..+++. +...++++..+.+++.+..-.++.++-..  .+
T Consensus       162 --------v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF  233 (337)
T KOG1580|consen  162 --------VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYF  233 (337)
T ss_pred             --------cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHH
Confidence                    11223445678999999988888888888888766653 36788899999999988766665532110  01


Q ss_pred             eeccCchHHHHHHHHHHhhhhh
Q 048127          225 KIQSGEELFTIFYAGIVASGIV  246 (251)
Q Consensus       225 ~~~~~~~~~~l~ylgi~~t~~~  246 (251)
                      ..-.+..|+.+..+++. +.++
T Consensus       234 ~~RhP~~~~~l~l~ai~-s~LG  254 (337)
T KOG1580|consen  234 VQRHPYVFWDLTLLAIA-SCLG  254 (337)
T ss_pred             HHhccHHHHHHHHHHHH-HHhh
Confidence            11112346666666664 3444

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.06  E-value=0.00093  Score=55.63  Aligned_cols=128  Identities=12%  Similarity=-0.009  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 048127            5 MALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFY   84 (251)
Q Consensus         5 ~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~   84 (251)
                      .+.+...++-+..++..|..-++ .+......+=..++.+.-+..+..-..-+.|. .++++..+..+|++|. +.|.+.
T Consensus       194 ~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~-cgkdr~l~~~lGvfgf-igQIll  270 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQLPH-CGKDRWLFVNLGVFGF-IGQILL  270 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceecCc-cccceEEEEEehhhhh-HHHHHH
Confidence            44555666667777777776454 67666666656666555444433323223333 4455555778899984 899999


Q ss_pred             HHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeEEEEeEEe
Q 048127           85 LLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFAKVLGTIA  135 (251)
Q Consensus        85 ~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~~~~G~~~  135 (251)
                      ..|+|.-.|+-.+++.++.-++..+...++++|-+++..|.|++.+++..+
T Consensus       271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v  321 (346)
T KOG4510|consen  271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV  321 (346)
T ss_pred             HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence            999999999999999999999999999999999999999999875555444

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.06  Score=45.84  Aligned_cols=196  Identities=14%  Similarity=0.066  Sum_probs=119.5

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccc--hhHHHH
Q 048127           30 SKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQN--SIPAVT  107 (251)
Q Consensus        30 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~--~~Pv~~  107 (251)
                      +|....+..-+.+.+.-.....  .++.. ...++.+..+...++.+. ....+.+.+++|.+=-.-.+-=+  +.|  +
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~--~~k~~-~~~~apl~~y~~is~tn~-~s~~~~yeaLKyvSyPtq~LaKscKmIP--V  123 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLK--WWKKE-LSGVAPLYKYSLISFTNT-LSSWCGYEALKYVSYPTQTLAKSCKMIP--V  123 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh--ccccc-CCCCCchhHHhHHHHHhh-cchHHHHHHHHhccchHHHHHHHhhhhH--H
Confidence            4666666666666665533322  22221 222333556777788874 78899999999997333333222  466  4


Q ss_pred             HHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCCcCCCchHHHHHHHHHHHHHHHHHHHHhH
Q 048127          108 FVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSSSKSQNWTWGCIFLFGHCISWAGWMVLQA  186 (251)
Q Consensus       108 ~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~~~  186 (251)
                      ++...++.|+|.+.++-+... --.|+.+     ....++..+      ....+.++...|..++...-+.=++-+..|+
T Consensus       124 mlmg~Lvy~~ky~~~eYl~~~LIs~Gvsi-----F~l~~~s~s------~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd  192 (327)
T KOG1581|consen  124 MLMGTLVYGRKYSSFEYLVAFLISLGVSI-----FSLFPNSDS------SSKSGRENSPIGILLLFGYLLFDGFTNATQD  192 (327)
T ss_pred             HHHHHHHhcCccCcHHHHHHHHHHhheee-----EEEecCCCC------ccccCCCCchHhHHHHHHHHHHHhhHHhHHH
Confidence            578899999999999876554 5556665     332221000      0112234567899999999888889999999


Q ss_pred             hhhhhcC-chhHHHHHHHHHHHHHHHHHHhheeCC--cccceeccCchHHHHHHHHHHh
Q 048127          187 PLLKKHP-AKLTLTSFTCFFRLIQFLAIAAFVETD--INRWKIQSGEELFTIFYAGIVA  242 (251)
Q Consensus       187 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ylgi~~  242 (251)
                      +..+++. ++..++++..+++++.-.......+..  +..+.-..++.+.-++-++.++
T Consensus       193 ~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~g  251 (327)
T KOG1581|consen  193 SLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCG  251 (327)
T ss_pred             HHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhh
Confidence            9988764 478888999999988887663322211  1111111224455666666654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.74  E-value=0.029  Score=47.44  Aligned_cols=115  Identities=12%  Similarity=0.110  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 048127            8 LALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE--RAPLTFSLLVQFFFLAILGITANQRFYL   85 (251)
Q Consensus         8 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~~~~~~~~   85 (251)
                      +..++.||..+..=|..   ++|+.+=...-...-.+.-+....+.+...  ....+.+++..+...|.+. ..+..++.
T Consensus       154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~  229 (293)
T COG2962         154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence            45678888888887765   377777766666666655554444433221  1112445566677888885 68999999


Q ss_pred             HhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccce
Q 048127           86 LGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDG  126 (251)
Q Consensus        86 ~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g  126 (251)
                      .|-+..|-+.-++++|..|....+++.++++|+++.-+..+
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~  270 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT  270 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999888655

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.64  E-value=0.0052  Score=44.90  Aligned_cols=108  Identities=14%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048127            8 LALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLG   87 (251)
Q Consensus         8 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~   87 (251)
                      ++++++||.+.++.|.+.+. .++..-.. |..--...     .+        .+++    +..-=.++ -.....|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--------~n~~----y~ipf~lN-q~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--------LNPK----YIIPFLLN-QSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--------HhHH----HHHHHHHH-HHHHHHHHHH
Confidence            45789999999999999765 55544431 32111111     00        0111    12222233 3567788999


Q ss_pred             hhccChhhhhhcc-chhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           88 LYYASPTFASAMQ-NSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        88 l~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      +...+-+.+.-+. ++.=++|++.++++.+|..+++++.|+. -..|+.+
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            9999999988885 6788899999999988888999999988 8888765

Many members are annotated as potential transmembrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.58  E-value=0.017  Score=49.85  Aligned_cols=132  Identities=11%  Similarity=0.067  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHHHH--hhhccC-CC---CCHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVAL-NIGVSKVAYPVHRNIIALILLSPFAYV--LEKKER-AP---LTFSLLVQFFFLAIL   75 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~-~~---~~~~~~~~~~~~g~l   75 (251)
                      +++.++.+.++-|...+..+... +++.++.+..++-..++.+...+....  .+..+. .+   ..+..+..+....+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            46678888899999999987776 446899999999999999988777666  221110 00   111233444455555


Q ss_pred             HHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           76 GITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        76 ~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      + ...+.+.+.-.+..++...+++..+--+.+.+++..+++++++..+|.|+. .+.|..+
T Consensus       235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence            5 356667777889999999999999999999999999999999999999998 8877776

; GO: 0055085 transmembrane transport

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.57  E-value=0.0075  Score=45.90  Aligned_cols=125  Identities=10%  Similarity=0.004  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 048127            6 ALLALQFCFVGFHIVSRVALNIGV-SKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFY   84 (251)
Q Consensus         6 ~ll~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~   84 (251)
                      ..+.+...-+....+.-...++ . +|....+.-+..+.+.+..+....+++..++.++..+ +...-|++|. ..-.+.
T Consensus         5 la~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~-~~V~~~   81 (138)
T PF04657_consen    5 LALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGV-FFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHH-HHHHHH
Confidence            3444555555555554333334 4 5999999999999999988888765543222222222 3455788874 677788


Q ss_pred             HHhhhccChhhhhhccch-hHHHHHHHHHH----hhcccccccccceeE-EEEeE
Q 048127           85 LLGLYYASPTFASAMQNS-IPAVTFVMASS----LRLEQVNNGRRDGFA-KVLGT  133 (251)
Q Consensus        85 ~~~l~~~~a~~a~~l~~~-~Pv~~~ll~~l----~~~e~i~~~~~~g~~-~~~G~  133 (251)
                      ....+...++.+..+.-+ .-+...+++.+    ..|+|++.+|.+|.. .++|+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv  136 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGV  136 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHH
Confidence            888999998888877554 56666667764    457788889988876 55554

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.51  E-value=0.038  Score=46.71  Aligned_cols=116  Identities=15%  Similarity=0.063  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQ   81 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~   81 (251)
                      |..+.++++.+.+.....+.|..  + +||....+=....-.+.-+.+..+. +++  ..+++.+++ ...|++ ....+
T Consensus       138 kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~~~n-il~G~~-w~ign  209 (269)
T PF06800_consen  138 KGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKSWKN-ILTGLI-WGIGN  209 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccchHHh-hHHHHH-HHHHH
Confidence            46778888888888888888873  3 7887776644433333333333322 221  223333443 445665 35788


Q ss_pred             HHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccc
Q 048127           82 RFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRD  125 (251)
Q Consensus        82 ~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~  125 (251)
                      .+++.+.+....+.+=.+..+.+++..+-+.+++||+-++|++.
T Consensus       210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~  253 (269)
T PF06800_consen  210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI  253 (269)
T ss_pred             HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH
Confidence            89999999999999999999999999999999999998888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.36  E-value=0.0055  Score=43.29  Aligned_cols=54  Identities=13%  Similarity=0.028  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhccccccccccee
Q 048127           74 ILGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGF  127 (251)
Q Consensus        74 ~l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~  127 (251)
                      +.+....+.++..++++.|.+.+ ++...+..+.+.+.+.+++||++|.+++.|+
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi   90 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGI   90 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhe
Confidence            33455788899999999999999 5567789999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=95.89  E-value=0.0059  Score=44.67  Aligned_cols=70  Identities=21%  Similarity=0.372  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHhhhhheee
Q 048127          176 ISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIVLSL  249 (251)
Q Consensus       176 ~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~t~~~~~l  249 (251)
                      ++||.+.+..|+..++. |+...+++++..+.+ .++.....+... .... ..+.+....+.+++++.+++.+
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP-FKNL-SPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC-ChhhhhhhhHhhccceehHHHH
Confidence            47899999999999886 689999999999998 666666654321 1111 1245777888888877776654

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.83  E-value=0.026  Score=48.75  Aligned_cols=66  Identities=15%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           70 FFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        70 ~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ++.|++-......+.+.++.+.|++..+=+..+.-++..+++..++|||++++.+.|.. .+.|..+
T Consensus        53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l  119 (300)
T PF05653_consen   53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL  119 (300)
T ss_pred             HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence            34455545567788899999999999998989999999999999999999999999988 8888877

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.67  E-value=0.012  Score=47.89  Aligned_cols=154  Identities=16%  Similarity=0.164  Sum_probs=101.9

Q ss_pred             HHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEeeCCccccccccccccCCccccCC
Q 048127           80 NQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQVTHATYLEPEHYMSS  158 (251)
Q Consensus        80 ~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~  158 (251)
                      ..+.---+++|.+...-++.-+++.+.++....++++.|++........ -++....     -...|++...        
T Consensus        81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~v-----a~w~D~q~~~--------  147 (309)
T COG5070          81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVV-----ATWGDQQASA--------  147 (309)
T ss_pred             HHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHH-----hccchhhHHH--------
Confidence            3344567899999999999999999999999999999999887766533 2222222     1111211000        


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHhHhhhh--hcCchhHHHHHHHHHHHHHHHHHHhheeCC-cccceec-cCchHHH
Q 048127          159 SKSQNWTWGCIFLFGHCISWAGWMVLQAPLLK--KHPAKLTLTSFTCFFRLIQFLAIAAFVETD-INRWKIQ-SGEELFT  234 (251)
Q Consensus       159 ~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~~  234 (251)
                      -..+..+.|.+++...++.-|.+....|+..|  +.. ....+++..+.+...++.+.+.+|+. +.+...+ ......+
T Consensus       148 ~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~a  226 (309)
T COG5070         148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMA  226 (309)
T ss_pred             HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHH
Confidence            01123567999999999999999999887654  232 35557899999999999888887652 2222111 1234556


Q ss_pred             HHHHHHHhhhhhe
Q 048127          235 IFYAGIVASGIVL  247 (251)
Q Consensus       235 l~ylgi~~t~~~~  247 (251)
                      +..-|+.+-+++|
T Consensus       227 m~ISgl~svgiSy  239 (309)
T COG5070         227 MFISGLCSVGISY  239 (309)
T ss_pred             HHHHHHHHhhhhh
Confidence            6777777666665

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.39  E-value=0.006  Score=45.17  Aligned_cols=64  Identities=16%  Similarity=0.095  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           72 LAILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        72 ~g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ..+......++++..++++.|.+.|=.+ ....-+.+.+++.++++|+++..+++|+. -++|++.
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~  100 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVL  100 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            3444456788999999999999988554 56888889999999999999999999998 7778776

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.33  E-value=0.0067  Score=43.64  Aligned_cols=63  Identities=19%  Similarity=0.059  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           73 AILGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        73 g~l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .+++...++.++..++|+.|.+.| ++-...--+-+.+.++++++|+.+..+++++. -++|++.
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~  100 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG  100 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence            344456788899999999999888 55577888899999999999999999999987 6666655

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.11  E-value=0.061  Score=39.12  Aligned_cols=61  Identities=13%  Similarity=-0.020  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           75 LGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        75 l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .+...++++...++|+.|.+.+ ++.....-+.+.+.+++++||+++..|+.|+. -+.|++.
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~  105 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM  105 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            3345788899999999999888 44566788888999999999999999999987 6655544

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.02  E-value=0.01  Score=51.37  Aligned_cols=132  Identities=18%  Similarity=0.147  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccHHHHHHHHHHHHHHH-HHHHHhhhccC---C--CCCHHHHHHHHHH
Q 048127            2 KLLMALLALQFCFVGFHIVSRVAL---NIGVSKVAYPVHRNIIALILLS-PFAYVLEKKER---A--PLTFSLLVQFFFL   72 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~~~~k~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~~~~   72 (251)
                      .+.+....+.+..+.--++.|..+   ++..+++....+---++.+.++ |+....+....   .  ..+.+.. .....
T Consensus       163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  241 (316)
T KOG1441|consen  163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILLLN  241 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHHHH
Confidence            345667778888899999999888   3358999999988889999998 88766443222   1  1222222 23334


Q ss_pred             HHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           73 AILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        73 g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .++. .+.+...|..+.+++|-+-++....==.+++..++++++|+++..+..|.. +++|+.+
T Consensus       242 sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~  304 (316)
T KOG1441|consen  242 SVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFL  304 (316)
T ss_pred             HHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHH
Confidence            4444 467888899999999988888877655566677888999999999999998 9999887

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.048  Score=46.79  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           69 FFFLAILGITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        69 ~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .++.|++-.......-|.+..+.|++..+-+..+.-+..++++..++|||++....+|.. +++|..+
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~  133 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT  133 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence            456777777788888999999999999999999999999999999999999999999999 9999998

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=94.93  E-value=0.013  Score=42.73  Aligned_cols=63  Identities=13%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           73 AILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        73 g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      .+.+....+.++..++++.|.+.+=.+ ..+.-+.+.+++++++||+++..++.|+. -++|++.
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~  100 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLV  100 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            444556788889999999999988554 66788888999999999999999999988 7777776

>PRK11431 multidrug efflux system protein; Provisional

Probab=94.89  E-value=0.015  Score=42.07  Aligned_cols=62  Identities=13%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHhhhccChhhh-hhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           74 ILGITANQRFYLLGLYYASPTFA-SAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        74 ~l~~~~~~~~~~~~l~~~~a~~a-~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      +.+...++++...++++.|.+.+ ++-....-+.+.+++.+++||++++.++.|+. -+.|++.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~   99 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIG   99 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence            44456788899999999999888 44566888889999999999999999999987 7777665

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=94.35  E-value=0.14  Score=39.08  Aligned_cols=53  Identities=28%  Similarity=0.302  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhh------cCchhHHHHHHHHHHHHHHHHHHhheeC
Q 048127          167 GCIFLFGHCISWAGWMVLQAPLLKK------HPAKLTLTSFTCFFRLIQFLAIAAFVET  219 (251)
Q Consensus       167 G~ll~l~aa~~~A~~~v~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~  219 (251)
                      |.++++.|.++.|++.++.|+..++      ..++..+..+....+.+.++|.+...|+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~   59 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEG   59 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5678999999999999999998776      2358889999999999999999888765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.24  E-value=0.99  Score=38.24  Aligned_cols=119  Identities=12%  Similarity=0.051  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhcccccccccc-ee---E-EEEeEEeeC
Q 048127           64 SLLVQFFFLAILGITANQRFYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGRRD-GF---A-KVLGTIAKC  137 (251)
Q Consensus        64 ~~~~~~~~~g~l~~~~~~~~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~~~-g~---~-~~~G~~~~g  137 (251)
                      +.+..-+..|++ ..+.|..++.+.++...+++-=+.. ..=+.+.+.+.++++|.-+.++++ |.   + -++|+.+  
T Consensus        43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~l--  119 (269)
T PF06800_consen   43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVIL--  119 (269)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHH--
Confidence            555555566666 5689999999999999888876654 566668889999999988877653 32   2 2333333  


Q ss_pred             CccccccccccccCCccccCC-cCCCchHHHHHHHHHHHHHHHHHHHHhHhhhhhcCchhHHH
Q 048127          138 PPLLHQVTHATYLEPEHYMSS-SKSQNWTWGCIFLFGHCISWAGWMVLQAPLLKKHPAKLTLT  199 (251)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~  199 (251)
                         ....++     +   ++. ++..+..-|....+++.+.|-.|.+..|-  .+. |+....
T Consensus       120 ---ts~~~~-----~---~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~  168 (269)
T PF06800_consen  120 ---TSYQDK-----K---SDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAF  168 (269)
T ss_pred             ---hccccc-----c---ccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhH
Confidence               543331     1   111 11234566899999999999999999543  333 455544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.01  E-value=0.81  Score=40.27  Aligned_cols=163  Identities=13%  Similarity=0.021  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH-HHHHHHHHHH--HHhhhc---cCCCCCHHHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNI-IALILLSPFA--YVLEKK---ERAPLTFSLLVQFFFLAILG   76 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~-~a~l~l~~~~--~~~~~~---~~~~~~~~~~~~~~~~g~l~   76 (251)
                      .++..++++++||+.++-.|.. ++ -| .+.-+.-.. ++.+ +.|+.  ....+.   .....+.+.+..-+..|++ 
T Consensus         8 G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~-   82 (345)
T PRK13499          8 GIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL-   82 (345)
T ss_pred             HHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH-
Confidence            4677888999999999999983 33 22 111111001 1111 11100  000011   0112344555545555666 


Q ss_pred             HHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccc---ccccc----ceeE-EEEeEEeeCCccccc----
Q 048127           77 ITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQV---NNGRR----DGFA-KVLGTIAKCPPLLHQ----  143 (251)
Q Consensus        77 ~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i---~~~~~----~g~~-~~~G~~~~g~~~~~~----  143 (251)
                      ....+..++.+.++...+.+--+ ..+.-+...++..++++|-.   +..+.    .|++ .++|+++     ...    
T Consensus        83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l-----~s~Ag~~  157 (345)
T PRK13499         83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAI-----VGRAGQL  157 (345)
T ss_pred             HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHH-----HHHhhhh
Confidence            46889999999999998888666 45777888888888888754   33332    3344 4455555     332    


Q ss_pred             cccccccCCccccCC-cCCCchHHHHHHHHHHHHHHHHHH
Q 048127          144 VTHATYLEPEHYMSS-SKSQNWTWGCIFLFGHCISWAGWM  182 (251)
Q Consensus       144 ~~~~~~~~~~~~~~~-~~~~~~~~G~ll~l~aa~~~A~~~  182 (251)
                      .+     +.  ..++ .++.+..-|....+++.+.++.|.
T Consensus       158 k~-----~~--~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        158 KE-----RK--MGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             cc-----cc--cccccccccchHhHHHHHHHHHHHHHHHH
Confidence            11     00  0000 123456789999999999999999

>TIGR00803 nst UDP-galactose transporter

Probab=93.74  E-value=0.2  Score=41.05  Aligned_cols=58  Identities=14%  Similarity=-0.046  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           78 TANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        78 ~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ...+.+..+.++|.++..-+....+.++.+.+++.++++|+++..++.|.. .+.|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            456678889999999999999999999999999999999999999999987 7777653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.88  E-value=0.022  Score=47.03  Aligned_cols=164  Identities=15%  Similarity=0.120  Sum_probs=99.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 048127            1 MKLLMALLALQFCFVGFHIVSRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITAN   80 (251)
Q Consensus         1 ~~~~~~ll~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~   80 (251)
                      |..++..++-++.||+...++..-   |=+|.+=..---..|.++-+.++.+ .   .|..+.+.+..-+..|++ ....
T Consensus         1 ~~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~---~p~~T~~~~iv~~isG~~-Ws~G   72 (288)
T COG4975           1 MMDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-V---SPELTLTIFIVGFISGAF-WSFG   72 (288)
T ss_pred             ChhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-e---cCccchhhHHHHHHhhhH-hhhh
Confidence            345677788999999998876432   3355544433334444443433333 1   234455544433444554 4688


Q ss_pred             HHHHHHhhhccChhhhhhccc-hhHHHHHHHHHHhhccccccccc-ce---eE-EEEeEEeeCCccccccccccccCCcc
Q 048127           81 QRFYLLGLYYASPTFASAMQN-SIPAVTFVMASSLRLEQVNNGRR-DG---FA-KVLGTIAKCPPLLHQVTHATYLEPEH  154 (251)
Q Consensus        81 ~~~~~~~l~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~e~i~~~~~-~g---~~-~~~G~~~~g~~~~~~~~~~~~~~~~~  154 (251)
                      |...+.+.++...+++.=+.+ +.-+-+.+++.+.+||-.+..+. +|   ++ -+.|+.+     -...++     +  
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l-----Ts~~~~-----~--  140 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL-----TSKQDR-----N--  140 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE-----eeeecc-----c--
Confidence            899999999999999887755 66677888888999998777764 33   33 4445554     443221     0  


Q ss_pred             ccCCcCCCchHHHHHHHHHHHHHHHHHHHH
Q 048127          155 YMSSSKSQNWTWGCIFLFGHCISWAGWMVL  184 (251)
Q Consensus       155 ~~~~~~~~~~~~G~ll~l~aa~~~A~~~v~  184 (251)
                      ..++++.++.-.|....+.|.++|-.|.+.
T Consensus       141 nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl  170 (288)
T COG4975         141 NKEEENPSNLKKGIVILLISTLGYVGYVVL  170 (288)
T ss_pred             cccccChHhhhhheeeeeeeccceeeeEee
Confidence            001112223456777777788888777776

>PRK13499 rhamnose-proton symporter; Provisional

Probab=90.30  E-value=8.1  Score=34.06  Aligned_cols=117  Identities=12%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHHH-------HHHHHHHhcCCCccHHHHHHHH---HHHHHHHH-HHHHh--hhccCC----C-CCH
Q 048127            2 KLLMALLALQFCFVGFH-------IVSRVALNIGVSKVAYPVHRNI---IALILLSP-FAYVL--EKKERA----P-LTF   63 (251)
Q Consensus         2 ~~~~~ll~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~-~~~~~--~~~~~~----~-~~~   63 (251)
                      |..+.++++.+..+...       +..+.+.+.|.+|.....-.+.   ++..+.-. ++.++  ++++.+    + .++
T Consensus       174 KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~  253 (345)
T PRK13499        174 KGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAK  253 (345)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccc
Confidence            55666777777777666       5666655567888766665555   44444332 22221  112111    1 121


Q ss_pred             HH-HHHHH---HHHHHHHHHHHHHHHHhhhccChhhhhh---cc-chhHHHHHHHHHHhhccccc
Q 048127           64 SL-LVQFF---FLAILGITANQRFYLLGLYYASPTFASA---MQ-NSIPAVTFVMASSLRLEQVN  120 (251)
Q Consensus        64 ~~-~~~~~---~~g~l~~~~~~~~~~~~l~~~~a~~a~~---l~-~~~Pv~~~ll~~l~~~e~i~  120 (251)
                      +. ++++.   ..|++ ....+.++..+-+..+...+..   +. .+.-++..+-+. ++||+=+
T Consensus       254 ~~~~~n~l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~  316 (345)
T PRK13499        254 PLLITNVLLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG  316 (345)
T ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence            11 23322   33333 3466677777777765544444   44 444455555555 6899866

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.04  E-value=0.47  Score=39.18  Aligned_cols=127  Identities=12%  Similarity=0.000  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhcc-C----CCCCHHHHHHHHHHHHHH
Q 048127            5 MALLALQFCFVGFHIVS---RVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKE-R----APLTFSLLVQFFFLAILG   76 (251)
Q Consensus         5 ~~ll~~~~~wg~~~~~~---k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~g~l~   76 (251)
                      +++++..-.-|......   |...+  -+-..+.+.-.+.+.+.+..-.++.+... .    .+.+ ..+..+...++-+
T Consensus       175 lLL~lSL~mDGlTg~~Qdrira~yq--~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP-~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  175 LLLILSLAMDGLTGSIQDRIRASYQ--RTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHP-YVFWDLTLLAIAS  251 (337)
T ss_pred             HHHHHHHHhcccchhHHHHHHHhhc--cCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhcc-HHHHHHHHHHHHH
Confidence            34455555555555543   22222  23445555666666665544333322110 0    0112 2344556667665


Q ss_pred             HHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           77 ITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        77 ~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                       ++.|.+.|.-+.+-+|-..+++..+--+++++.+.++++.+++.+||+|.. .+.|...
T Consensus       252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence             478889999999999999999999999999999999999999999999976 6665555

>COG2510 Predicted membrane protein [Function unknown]

Probab=87.89  E-value=3.3  Score=31.01  Aligned_cols=76  Identities=13%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhcCchhHHHHHHHHHHHHHHHHHHhheeCCcccceeccCchHHHHHHHHHHhhhhh
Q 048127          168 CIFLFGHCISWAGWMVLQAPLLKKHPAKLTLTSFTCFFRLIQFLAIAAFVETDINRWKIQSGEELFTIFYAGIVASGIV  246 (251)
Q Consensus       168 ~ll~l~aa~~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ylgi~~t~~~  246 (251)
                      ..+.+++++++++..++.|--.++. ||...++...+...+.+........+....-.. ..+.|.-+..-|+ +++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGl-a~gls   80 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGL-AGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHH-HHHHH
Confidence            5678999999999999999888876 677878888777777777666655321000011 2355666666663 34444

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=87.53  E-value=2.8  Score=37.11  Aligned_cols=125  Identities=12%  Similarity=0.120  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHHHHHHHHHhhhccCC--CCCH-HHHHHHHHHHHHH
Q 048127            3 LLMALLALQFCFVGFHIVSRVALNI---GVSKVAYPVHRNIIALILLSPFAYVLEKKERA--PLTF-SLLVQFFFLAILG   76 (251)
Q Consensus         3 ~~~~ll~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~-~~~~~~~~~g~l~   76 (251)
                      +.+..+.+++.+|..-+..|.=.++   .+|.-.+-.+--++..+++.|.......-.++  .++. .....+.+.++++
T Consensus       248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~lig  327 (416)
T KOG2765|consen  248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIG  327 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHH
Confidence            4567788999999999998776543   26666666666677777777665553321111  1222 2233356778999


Q ss_pred             HHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE
Q 048127           77 ITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA  128 (251)
Q Consensus        77 ~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~  128 (251)
                      +...-++|..|.-.|++-.+++= .-+.|+ .++...++.++++++..++|..
T Consensus       328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~~~iiGsi  379 (416)
T KOG2765|consen  328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSALYIIGSI  379 (416)
T ss_pred             HHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999988884 446775 5667788888999999998854

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.81  E-value=3.5  Score=35.62  Aligned_cols=131  Identities=13%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHhhhc-----cCC-CCCHHHHHHHHHHHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALNI-GVSKVAYPVHRNIIALILLSPFAYVLEKK-----ERA-PLTFSLLVQFFFLAILG   76 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~g~l~   76 (251)
                      |..+....+.-....+..|...+. +.+-..+.++-.+++.+.+....++.+..     +.+ ..+...+.....-++.+
T Consensus       159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~g  238 (314)
T KOG1444|consen  159 YSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMG  238 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHH
Confidence            445555556666666677777654 36677788899999888888777654421     111 12233445556667776


Q ss_pred             HHHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           77 ITANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        77 ~~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      . .-.++.++..+.+++..-++.....-..+.+...++++++.++....|+. +++|.+.
T Consensus       239 f-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~  297 (314)
T KOG1444|consen  239 F-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVL  297 (314)
T ss_pred             H-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhH
Confidence            4 56678889999999888888775566666666677888999999999998 9988887

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=85.08  E-value=4  Score=34.66  Aligned_cols=167  Identities=11%  Similarity=0.006  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ChhhhhhccchhHHHHHHHH
Q 048127           33 AYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLGLYYA-SPTFASAMQNSIPAVTFVMA  111 (251)
Q Consensus        33 ~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~l~~~-~a~~a~~l~~~~Pv~~~ll~  111 (251)
                      .+++.+|++-+.-=+++.-.... .+++.+.|++.  .....+  ...+.+-.+++++- +...=-++-+-.++.++.++
T Consensus        35 LITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~--i~V~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g  109 (330)
T KOG1583|consen   35 LITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYA--ITVAMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG  109 (330)
T ss_pred             ehHHHHHHHHHHhceeeeccccc-cCCCCchhhhh--eehhee--eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence            55666776655543333211111 13566766653  223333  24556667888873 44444556677899999999


Q ss_pred             HHhhcccccccccceeE-EEEeEEeeCCccccc--cccccccCCccccC---CcCCCchHHHHHHHHHHHHHHHHHHHHh
Q 048127          112 SSLRLEQVNNGRRDGFA-KVLGTIAKCPPLLHQ--VTHATYLEPEHYMS---SSKSQNWTWGCIFLFGHCISWAGWMVLQ  185 (251)
Q Consensus       112 ~l~~~e~i~~~~~~g~~-~~~G~~~~g~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~G~ll~l~aa~~~A~~~v~~  185 (251)
                      +++.++|.+.+|..+.+ --+|+++     -..  +.+... +.+..+.   .+....|..|..+...+-+.-|...+.+
T Consensus       110 ~il~~k~Ys~~Qy~Sv~~iTiGiiI-----cTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyq  183 (330)
T KOG1583|consen  110 WILLGKRYSLRQYSSVLMITIGIII-----CTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQ  183 (330)
T ss_pred             HHhccceeehhhhhhHHhhhhhhee-----EEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 7777777     211  000000 0000111   1122357889999889999999999888


Q ss_pred             HhhhhhcC-chhHHHHHHHHHHHHHH
Q 048127          186 APLLKKHP-AKLTLTSFTCFFRLIQF  210 (251)
Q Consensus       186 ~~~~~~~~-~~~~~~~~~~~~~~l~~  210 (251)
                      .+.-||+. ++....++.=..+-..+
T Consensus       184 E~~Y~kyGKh~~EalFytH~LsLP~F  209 (330)
T KOG1583|consen  184 ETTYQKYGKHWKEALFYTHFLSLPLF  209 (330)
T ss_pred             HHHHHHhcCChHHHHHHHHHhccchH
Confidence            87767764 35666666655544433

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.97  E-value=1.4  Score=33.92  Aligned_cols=124  Identities=10%  Similarity=-0.017  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048127            9 ALQFCFVGFHIV-SRVALNIGVSKVAYPVHRNIIALILLSPFAYVLEKKERAPLTFSLLVQFFFLAILGITANQRFYLLG   87 (251)
Q Consensus         9 ~~~~~wg~~~~~-~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~   87 (251)
                      .+..+-.....+ .|..... =+|....+.-+..+..++..+....+++......++..++.+.-|.+|. .+-......
T Consensus        12 ~aG~~l~~Q~~iN~qL~~~~-~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~vt~s~~l   89 (150)
T COG3238          12 LAGALLPLQAAINGRLARYL-GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFVTSSILL   89 (150)
T ss_pred             HHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhhhhhHHh
Confidence            333443333333 3444333 2699999999999999998888874333221222222233455567764 333333344


Q ss_pred             hhccChhhh-hhccchhHHHHHHHHHH-hh---cccccccccceeE-EEEeEE
Q 048127           88 LYYASPTFA-SAMQNSIPAVTFVMASS-LR---LEQVNNGRRDGFA-KVLGTI  134 (251)
Q Consensus        88 l~~~~a~~a-~~l~~~~Pv~~~ll~~l-~~---~e~i~~~~~~g~~-~~~G~~  134 (251)
                      .....++.. .+...-.-+...+++.+ .+   +++++..++.|++ .++|+.
T Consensus        90 ~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil  142 (150)
T COG3238          90 APRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGIL  142 (150)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHH
Confidence            444444443 33445566666666655 22   4567888888877 666633

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=82.06  E-value=26  Score=30.31  Aligned_cols=129  Identities=9%  Similarity=0.066  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCHHHHHHHHHHHHHHH
Q 048127            4 LMALLALQFCFVGFHIVSRVALN-IGVSKVAYPVHRNIIALILLSPFAYVLEKKERA-----PLTFSLLVQFFFLAILGI   77 (251)
Q Consensus         4 ~~~ll~~~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~~   77 (251)
                      +.++....++-|......+...+ .++++..+.+.-.++.++.=..-... ....++     +..++.++-++.....|.
T Consensus       174 ~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~s~~ga  252 (327)
T KOG1581|consen  174 ILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLYSTCGA  252 (327)
T ss_pred             HHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHHHHhhh
Confidence            45555566666766666555443 35888888887777776664443221 111111     112233334555566653


Q ss_pred             HHHHHHHHHhhhccChhhhhhccchhHHHHHHHHHHhhcccccccccceeE-EEEeEE
Q 048127           78 TANQRFYLLGLYYASPTFASAMQNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTI  134 (251)
Q Consensus        78 ~~~~~~~~~~l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~  134 (251)
                       ..|.+.++-++.=.+-.-+.+..+-=++.++++.+.++.+++..+|.|.. -+.|..
T Consensus       253 -vGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~  309 (327)
T KOG1581|consen  253 -VGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIF  309 (327)
T ss_pred             -hhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHH
Confidence             67777777777766666677778888999999999999999999999988 444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.11
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.95

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.11  E-value=3.1e-06  Score=60.96  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           71 FLAILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ..+.++...++.++..++++.|.+.+..+ ..+.|+.+.+++++++||+++.+++.|+. -+.|+..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~  100 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLI  100 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            45556667888999999999999999887 89999999999999999999999999998 7778776

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.95  E-value=1.3e-06  Score=65.38  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhccChhhhhhc-cchhHHHHHHHHHHhhcccccccccceeE-EEEeEEe
Q 048127           71 FLAILGITANQRFYLLGLYYASPTFASAM-QNSIPAVTFVMASSLRLEQVNNGRRDGFA-KVLGTIA  135 (251)
Q Consensus        71 ~~g~l~~~~~~~~~~~~l~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~e~i~~~~~~g~~-~~~G~~~  135 (251)
                      ..+++...+++.++..++++.+++.+..+ .++.|++++++++++++|+++..+++|+. -++|+.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~l  100 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLI  100 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            45666677899999999999999999888 89999999999999999999999999998 8888877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00