Citrus Sinensis ID: 048129

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
VIRAATAIYLQSSSHSSSNLSLLYHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW
ccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEEEEEcEEcccccccHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEcccEEEEEEccccEEEEEcc
cccccccEEcccccccccccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHcccccccEEEEEHHHHHHccccHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEcc
VIRAATAIYLqssshsssnlSLLYHFCggsainiseeeskdVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFnretgkitskrvkgeeiqllqpeetILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTEtkdlnedkfdlnageavavyspillsrtrhPDFLIKMLRKISPCVMVIIEVEanhnsqnfeDRFFEVLFHYSASFDCLkvsmarcdpervTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLtldrngqclivgwkgspqlslsvw
VIRAAtaiylqssshsssnLSLLYHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALqerfnretgkitskrvkgeeiqllqpeetiLSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKItavgssskqrMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAvyspillsrtrHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVgwkgspqlslsvw
VIRAATAIYlqssshsssnlsllYHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW
*******************LSLLYHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAV************KRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKG*********
**RAATA**************************************HLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITS**************ETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW
VIRAATAIYLQSSSHSSSNLSLLYHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAV***********GKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW
***********************YHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW
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VIRAATAIYLQSSSHSSSNLSLLYHFCGGSAINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q9C8Y3511 DELLA protein RGL1 OS=Ara yes no 0.878 0.708 0.297 3e-45
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.868 0.654 0.294 1e-44
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.871 0.608 0.284 2e-42
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.856 0.657 0.278 2e-40
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.864 0.614 0.290 3e-40
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.864 0.621 0.290 5e-40
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.890 0.582 0.283 2e-39
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.871 0.686 0.286 4e-39
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.861 0.666 0.289 6e-39
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.871 0.610 0.266 7e-39
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 195/387 (50%), Gaps = 25/387 (6%)

Query: 31  AINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVK 90
           ++ + + +   V LVH L+ CAE +       A  L+ H    +S    ++ +V  YF +
Sbjct: 139 SVVVLDSQETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAE 198

Query: 91  ALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAI 150
            L  R  R   +        +++ L    +T+       +  Y+   + +   F   QAI
Sbjct: 199 GLARRIYRIYPR--------DDVALSSFSDTLQ------IHFYESCPYLKFAHFTANQAI 244

Query: 151 IERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKR 210
           +E  A+A+++H+IDL +  G     L+QALA R   P +  ++T +G S    ++E G +
Sbjct: 245 LEVFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDF-RLTGIGYSLTD-IQEVGWK 302

Query: 211 LAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAG-EAVAVYSPILLSRT-RHP---DFL 265
           L   A T  + F FK + +    DL  +  D+  G E+VAV S   L R   HP   D  
Sbjct: 303 LGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVFELHRLLAHPGSIDKF 362

Query: 266 IKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEE 325
           +  ++ I P +M ++E EANHN   F DRF E L +YS+ FD L+   ++   +RV   E
Sbjct: 363 LSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQ---DRV-MSE 418

Query: 326 MYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFA 385
           ++LG+ I N++A EGE+R+ RH  ++ WR  F   G     + +++  QA +++  +A A
Sbjct: 419 LFLGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGA 478

Query: 386 SYLTLDRNGQCLIVGWKGSPQLSLSVW 412
               ++ N  CL++GW+  P ++ S W
Sbjct: 479 DGYNVEENEGCLLLGWQTRPLIATSAW 505
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
224111944446 GRAS family transcription factor [Populu 0.995 0.919 0.543 1e-118
224111950 561 GRAS family transcription factor [Populu 0.992 0.729 0.505 1e-112
224111952 588 GRAS family transcription factor [Populu 0.995 0.697 0.497 1e-110
224111946489 GRAS family transcription factor [Populu 0.987 0.832 0.495 1e-109
255556352454 DELLA protein GAI1, putative [Ricinus co 0.997 0.905 0.496 1e-108
255556358 562 DELLA protein RGL1, putative [Ricinus co 0.985 0.722 0.504 1e-107
255564942 594 DELLA protein GAI1, putative [Ricinus co 0.983 0.681 0.489 1e-107
359479949 616 PREDICTED: DELLA protein GAI1-like [Viti 1.0 0.668 0.490 1e-105
297743985 582 unnamed protein product [Vitis vinifera] 1.0 0.707 0.490 1e-105
224127929 594 GRAS family transcription factor [Populu 0.987 0.685 0.463 1e-104
>gi|224111944|ref|XP_002316030.1| GRAS family transcription factor [Populus trichocarpa] gi|222865070|gb|EEF02201.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/418 (54%), Positives = 294/418 (70%), Gaps = 8/418 (1%)

Query: 1   VIRAATAIYLQSSSHSSSNLSLLYHFCGG--SAINISEEESKDVELVHLLILCAEKIGSQ 58
           V+R A A ++Q S     +LSLL HF  G  +    S +E KD+EL  LL+  A+KI +Q
Sbjct: 12  VMRVARARFIQISCQQHIDLSLLNHFFDGHVAQFGSSGKEIKDMELALLLLASADKIENQ 71

Query: 59  QFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQP 118
           QFD AS  L+ C   SSK GNSV+RVVHYF KAL ER  R+ G +T   ++ +  QLL P
Sbjct: 72  QFDNASKSLNLCGFLSSKRGNSVQRVVHYFAKALGERIERKIGVVTLTGMESKG-QLLHP 130

Query: 119 EETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQ 178
           EET ++L PAL+AC     + Q + FAG QA++ER+ SAK++H IDLAIRSG HCIVLMQ
Sbjct: 131 EETTVTLNPALIACSLRQPYSQVSQFAGIQAVVERLTSAKKVHFIDLAIRSGGHCIVLMQ 190

Query: 179 ALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNED 238
           ALA R E PVELLKITAVG++S+Q+MEE G +L+ FAET +LPFSFK + +   KDL ED
Sbjct: 191 ALANRHESPVELLKITAVGTTSEQKMEEAGVKLSCFAETLSLPFSFKAITIENIKDLKED 250

Query: 239 KFDLNAGEAVAVYSPILLSRTR-HP---DFLIKMLRKISPCVMVIIEVEANHNSQNFEDR 294
            F+L+ GE VA++S I+L   + HP   + L+ +LR ++P VMVI E EANH    F DR
Sbjct: 251 MFELSDGEVVAIFSRIMLRTIKPHPGCMESLLGVLRNLNPRVMVITEFEANHCLPIFIDR 310

Query: 295 FFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWR 354
           F E LF YSA +DCL+ +M  CDP R+T E   LGQ IR+I+A E ++R+F+H+KID WR
Sbjct: 311 FLEALFFYSAFYDCLEFNMDPCDPYRMTLEAC-LGQEIRDIVAAEDDKRMFQHLKIDGWR 369

Query: 355 KFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW 412
             F + GMVE ELSTSS +QAELV++NFA  +  TLDRNG+CLI GW+G+P LS+S W
Sbjct: 370 ANFAKLGMVEEELSTSSFYQAELVLQNFASGNLCTLDRNGKCLITGWRGTPILSVSAW 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111950|ref|XP_002316033.1| GRAS family transcription factor [Populus trichocarpa] gi|222865073|gb|EEF02204.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111952|ref|XP_002316034.1| GRAS family transcription factor [Populus trichocarpa] gi|222865074|gb|EEF02205.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111946|ref|XP_002316031.1| GRAS family transcription factor [Populus trichocarpa] gi|222865071|gb|EEF02202.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556352|ref|XP_002519210.1| DELLA protein GAI1, putative [Ricinus communis] gi|223541525|gb|EEF43074.1| DELLA protein GAI1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255556358|ref|XP_002519213.1| DELLA protein RGL1, putative [Ricinus communis] gi|223541528|gb|EEF43077.1| DELLA protein RGL1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255564942|ref|XP_002523464.1| DELLA protein GAI1, putative [Ricinus communis] gi|223537292|gb|EEF38923.1| DELLA protein GAI1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359479949|ref|XP_002270640.2| PREDICTED: DELLA protein GAI1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743985|emb|CBI36955.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127929|ref|XP_002329212.1| GRAS family transcription factor [Populus trichocarpa] gi|222870993|gb|EEF08124.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.878 0.708 0.299 8.1e-44
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.895 0.674 0.295 1.7e-43
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.871 0.686 0.291 3.9e-37
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.881 0.472 0.298 7.6e-37
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.861 0.666 0.287 1.3e-36
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.388 0.331 0.316 1.7e-36
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.876 0.614 0.293 2e-36
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.871 0.886 0.310 3.5e-36
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.635 0.588 0.300 2.4e-35
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.907 0.613 0.270 1e-34
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 116/387 (29%), Positives = 196/387 (50%)

Query:    31 AINISEEESKDVELVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVK 90
             ++ + + +   V LVH L+ CAE +       A  L+ H    +S    ++ +V  YF +
Sbjct:   139 SVVVLDSQETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAE 198

Query:    91 ALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAI 150
              L  R  R    I  +    +++ L    +T+       +  Y+   + +   F   QAI
Sbjct:   199 GLARRIYR----IYPR----DDVALSSFSDTLQ------IHFYESCPYLKFAHFTANQAI 244

Query:   151 IERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKR 210
             +E  A+A+++H+IDL +  G     L+QALA R   P +  ++T +G S    ++E G +
Sbjct:   245 LEVFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDF-RLTGIGYSLTD-IQEVGWK 302

Query:   211 LAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAG-EAVAVYSPILLSRT-RHP---DFL 265
             L   A T  + F FK + +    DL  +  D+  G E+VAV S   L R   HP   D  
Sbjct:   303 LGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVFELHRLLAHPGSIDKF 362

Query:   266 IKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEE 325
             +  ++ I P +M ++E EANHN   F DRF E L +YS+ FD L+   ++   +RV   E
Sbjct:   363 LSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQ---DRV-MSE 418

Query:   326 MYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFA 385
             ++LG+ I N++A EGE+R+ RH  ++ WR  F   G     + +++  QA +++  +A A
Sbjct:   419 LFLGRQILNLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGA 478

Query:   386 SYLTLDRNGQCLIVGWKGSPQLSLSVW 412
                 ++ N  CL++GW+  P ++ S W
Sbjct:   479 DGYNVEENEGCLLLGWQTRPLIATSAW 505
GO:0005634 "nucleus" evidence=ISM;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IMP
GO:0009651 "response to salt stress" evidence=IGI
GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA
GO:0048444 "floral organ morphogenesis" evidence=RCA
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS79
GRAS family transcription factor (446 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 4e-81
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  253 bits (649), Expect = 4e-81
 Identities = 128/379 (33%), Positives = 194/379 (51%), Gaps = 18/379 (4%)

Query: 44  LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKI 103
           LVHLL+ CAE + S     A  +L      +S  G+ ++R+  YF +AL  R  R +G  
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLAR-SGSS 59

Query: 104 TSKRVKGEEIQLLQPEETILSLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLI 163
               +           E + + +         S + +   F   QAI+E     +R+H+I
Sbjct: 60  IYSALPPSPSTPSDSVEVLAAYK-LFYEV---SPYLKFGHFTANQAILEAFEGEERVHII 115

Query: 164 DLAIRSGSHCIVLMQALATRQECPVELLKITAVGS---SSKQRMEETGKRLAYFAETWNL 220
           D  I  G     L+QALA+R   P   L+IT +GS   SS + +EETG RLA FA++  +
Sbjct: 116 DFDIGQGLQWPSLIQALASRPGGP-PHLRITGIGSPQFSSAEELEETGDRLAQFADSLGV 174

Query: 221 PFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSR-------TRHPDFLIKMLRKIS 273
           PF F  ++    +DL+ +  D+  GEA+AV     L R          P FL ++++ ++
Sbjct: 175 PFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFL-RLVKSLN 233

Query: 274 PCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIR 333
           P V+ ++E EANHNS  F  RF E L +YSA FD L+ ++ R   ER   E   LG+ I 
Sbjct: 234 PKVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIV 293

Query: 334 NIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRN 393
           N++A EG ER+ RH     WR+   R G     LS  ++ QA+L+++ +    Y   + N
Sbjct: 294 NVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDN 353

Query: 394 GQCLIVGWKGSPQLSLSVW 412
           G  L++GWKG P ++ S W
Sbjct: 354 G-SLVLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.45
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.72
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.7
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.68
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 93.33
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 92.35
PLN02233261 ubiquinone biosynthesis methyltransferase 91.62
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.17
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 89.01
PRK11207197 tellurite resistance protein TehB; Provisional 89.0
PLN02336475 phosphoethanolamine N-methyltransferase 88.89
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 88.55
PRK12335287 tellurite resistance protein TehB; Provisional 88.26
TIGR03438301 probable methyltransferase. This model represents 87.85
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 87.72
PRK06202232 hypothetical protein; Provisional 87.68
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 87.58
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 87.5
PRK09489342 rsmC 16S ribosomal RNA m2G1207 methyltransferase; 85.72
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 84.28
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 82.22
PLN02585315 magnesium protoporphyrin IX methyltransferase 82.18
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 81.69
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 81.67
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-109  Score=842.74  Aligned_cols=362  Identities=36%  Similarity=0.631  Sum_probs=333.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCCCCchhhHHHHHHHHHHhhhcccCCCcccccccccccccCChHHHHh
Q 048129           44 LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETIL  123 (412)
Q Consensus        44 l~~lLl~cA~Av~~~~~~~A~~lL~~l~~~~s~~G~~~qRla~yF~eAL~~Rl~~~~g~~~~~~~~~~~~~~~~~~~~~~  123 (412)
                      |+|||++||+||++||.+.|+.+|++|++++||+|||+||+|+||++||.+|+.+ +|...+..+...   ..++.. ..
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~-~~~~~~~~~~~~---~~~~~~-~~   75 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSG-SGPGLYSALPPS---SPSPSE-SS   75 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhc-cCcccccCCCCc---cccccc-hH
Confidence            6899999999999999999999999999999999999999999999999999996 333333222211   111111 11


Q ss_pred             hHHHHHHHHHhcCchhhHHHHHhhHHHHhhhhcCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCC---C
Q 048129          124 SLRPALVACYKESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSS---S  200 (412)
Q Consensus       124 ~~~~a~~~~~~~sP~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~---~  200 (412)
                      ....+++.||+.|||+||+|||||||||||++|+++||||||||++|.|||+|||+||.|++||| +||||||+++   +
T Consensus        76 ~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~~  154 (374)
T PF03514_consen   76 EQLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPP-SLRITGIGPPNSGS  154 (374)
T ss_pred             HHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCCc
Confidence            23458899999999999999999999999999999999999999999999999999999999998 7999999983   5


Q ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCccccccCCCCceEEEeecccc--------CCCCchHHHHHHHHhc
Q 048129          201 KQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILL--------SRTRHPDFLIKMLRKI  272 (412)
Q Consensus       201 ~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L--------~~~~~~~~~L~~vr~L  272 (412)
                      .+.+++||+||.+||+++||||||++|.+.++++++++++++++||+|||||+++|        ...++++.||+.||+|
T Consensus       155 ~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L  234 (374)
T PF03514_consen  155 ADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSL  234 (374)
T ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhc
Confidence            77899999999999999999999999767899999999999999999999999999        2245799999999999


Q ss_pred             CCCEEEEEeecCcCCCCchHHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhHHHHHhHhhccccccccccchhH
Q 048129          273 SPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDA  352 (412)
Q Consensus       273 ~P~vvvl~E~ea~~n~~~F~~RF~eaL~~YsalFdsLda~~~~~~~~R~~iE~~~lg~eI~niVa~eG~~R~eR~e~~~~  352 (412)
                      +|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++
T Consensus       235 ~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~  314 (374)
T PF03514_consen  235 NPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQ  314 (374)
T ss_pred             CCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeeecCCcchHHHHHHHHHHcCCCCceEEEecCCEEEEeECCceeEEEecC
Q 048129          353 WRKFFHRFGMVEAELSTSSLFQAELVIKNFAFASYLTLDRNGQCLIVGWKGSPQLSLSVW  412 (412)
Q Consensus       353 W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~~~~~~~~~~~~l~L~Wk~~pL~~~SaW  412 (412)
                      |+.||.+|||+++|+|++++.||+.|+++|+ +++|++++++|||+||||++||+++|||
T Consensus       315 W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaW  373 (374)
T PF03514_consen  315 WRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAW  373 (374)
T ss_pred             HHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCc
Confidence            9999999999999999999999999999998 6779999999999999999999999999

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 57/424 (13%), Positives = 112/424 (26%), Gaps = 150/424 (35%)

Query: 18  SNLSLLYHFCGGSA-INISEEESKDVELVHLLILC--AEKIGSQQFDRASTLLDHCENFS 74
            +  +          +N+    S +  L  L  L    +   + + D +S +     +  
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-- 229

Query: 75  SKIGNSVERVVHYFVKALQERFNRETGKITSKRVKGEEIQLLQPEETILSLRPALVACYK 134
                            +Q    R                       +L  +P     Y+
Sbjct: 230 -----------------IQAELRR-----------------------LLKSKP-----YE 244

Query: 135 ESSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKIT 194
                   L      ++  V +AK  +  +L       C +L   L TR +   + L   
Sbjct: 245 NC------LL-----VLLNVQNAKAWNAFNL------SCKIL---LTTRFKQVTDFLS-- 282

Query: 195 AVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPI 254
              +++   ++     L    E  +L            K L+    DL   E +   +P 
Sbjct: 283 -AATTTHISLDHHSMTL-TPDEVKSL-LL---------KYLDCRPQDL-PREVLTT-NPR 328

Query: 255 LLS--------------RTRHPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRF-F--- 296
            LS                +H +   K+   I   + V+   E     + F+    F   
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPS 384

Query: 297 --------EVLFHYSASFD-------CLKVSMARCDPERVTFEEMYLGQHIRNIIATEGE 341
                    +++      D         K S+    P+  T        ++   +  + E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLE--LKVKLE 440

Query: 342 ERIFRHMK-IDAWRK-----------------FFHRFG--MVEAELS-TSSLFQAELVIK 380
                H   +D +                   F+   G  +   E     +LF   +V  
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFL 498

Query: 381 NFAF 384
           +F F
Sbjct: 499 DFRF 502

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.58
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.15
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 94.89
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.7
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 94.67
1vl5_A260 Unknown conserved protein BH2331; putative methylt 94.65
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.56
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.56
3dp7_A363 SAM-dependent methyltransferase; structural genomi 94.36
3hnr_A220 Probable methyltransferase BT9727_4108; structural 94.07
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.93
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.86
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 93.5
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 93.46
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 92.84
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.84
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.74
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 92.51
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 92.43
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.36
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 92.32
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 92.09
3m70_A286 Tellurite resistance protein TEHB homolog; structu 91.73
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 91.69
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 91.42
3f4k_A257 Putative methyltransferase; structural genomics, P 91.17
1xxl_A239 YCGJ protein; structural genomics, protein structu 90.85
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 90.41
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 90.38
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 90.3
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 90.27
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 89.74
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 89.25
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 88.79
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 88.68
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 88.56
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 88.55
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 88.44
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 88.18
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 88.12
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 87.79
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 87.09
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 86.97
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 86.43
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 86.4
3ocj_A305 Putative exported protein; structural genomics, PS 85.94
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 85.75
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 85.33
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 84.99
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 84.89
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 84.8
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 84.28
1wzn_A252 SAM-dependent methyltransferase; structural genomi 84.23
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 83.82
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 83.43
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 82.71
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 82.62
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 82.33
3lcc_A235 Putative methyl chloride transferase; halide methy 80.4
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 80.24
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.58  E-value=0.0011  Score=62.95  Aligned_cols=109  Identities=13%  Similarity=0.189  Sum_probs=66.5

Q ss_pred             CeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHHHHHHhcCCcEEEEEeecCCCCCCcc
Q 048129          158 KRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLAYFAETWNLPFSFKIVLVTETKDLNE  237 (412)
Q Consensus       158 ~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~~fA~~lgv~Fef~~v~~~~~e~l~~  237 (412)
                      ..-+|+|+|.|.|.    +...|+.+-+. | ..+||||+. +...++.+.+++.++-  .+.+++|..   .+..++. 
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~~~-~-~~~v~gvD~-s~~ml~~A~~~~~~~~--~~~~v~~~~---~D~~~~~-  136 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNIHH-D-NCKIIAIDN-SPAMIERCRRHIDAYK--APTPVDVIE---GDIRDIA-  136 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTCCS-S-SCEEEEEES-CHHHHHHHHHHHHTSC--CSSCEEEEE---SCTTTCC-
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhcCC-C-CCEEEEEEC-CHHHHHHHHHHHHhhc--cCceEEEee---ccccccc-
Confidence            34579999999884    45566766433 3 489999997 6666777776654322  223445433   3344433 


Q ss_pred             ccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE-eec
Q 048129          238 DKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII-EVE  283 (412)
Q Consensus       238 ~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~-E~e  283 (412)
                          ..+-..++.|+.++.-.+..+..+|+.| |.|+|.-..++ |.-
T Consensus       137 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          137 ----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             ----CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ----ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence                2233566666655543344556778777 77999876554 543
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.35
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.57
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.13
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 95.88
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.89
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 93.52
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 92.96
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 92.32
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 92.31
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 92.0
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 91.76
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 91.69
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 91.5
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 90.32
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 90.17
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 89.59
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 88.69
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 88.32
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 85.92
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 85.62
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 83.33
d1dusa_194 Hypothetical protein MJ0882 {Archaeon Methanococcu 81.75
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.0081  Score=52.72  Aligned_cols=125  Identities=12%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             cCchhhHHHHHhhHHHHhhhh--cCCeeEEEecccCCccchHHHHHHHHhCCCCCCceEEEEEecCCChHHHHHHHHHHH
Q 048129          135 ESSFYQATLFAGTQAIIERVA--SAKRIHLIDLAIRSGSHCIVLMQALATRQECPVELLKITAVGSSSKQRMEETGKRLA  212 (412)
Q Consensus       135 ~sP~~~fa~~taNqaIleA~~--g~~~vHIID~~i~~G~QWp~LiqaLa~R~~gpp~~LrIT~I~~~~~~~l~~tg~rL~  212 (412)
                      ..|++..-    ++.|.+-++  -...-||+|+|.|.|.    +...|+.... .| ..++|||+. +...++.+.+++.
T Consensus        18 ~iP~Y~~~----~~~i~~~~~~~~~~~~~vLDlGCGtG~----~~~~l~~~~~-~~-~~~v~giD~-S~~ml~~A~~~~~   86 (225)
T d1im8a_          18 SVPGYSNI----ITAIGMLAERFVTADSNVYDLGCSRGA----ATLSARRNIN-QP-NVKIIGIDN-SQPMVERCRQHIA   86 (225)
T ss_dssp             HSTTHHHH----HHHHHHHHHHHCCTTCEEEEESCTTCH----HHHHHHHTCC-CS-SCEEEEECS-CHHHHHHHHHHHH
T ss_pred             cCCCHHHH----HHHHHHHHHHhcCCCCEEEEeccchhh----HHHHHHHhhc-CC-CCceEEeCC-CHHHHHHHHHHhH
Confidence            34765543    344433332  2345689999999884    3345554432 23 589999987 6677777766664


Q ss_pred             HHHHhcCCcEEEEEeecCCCCCCccccccCCCCceEEEeeccccCCCCchHHHHHHH-HhcCCCEEEEE
Q 048129          213 YFAETWNLPFSFKIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTRHPDFLIKML-RKISPCVMVII  280 (412)
Q Consensus       213 ~fA~~lgv~Fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~L~~~~~~~~~L~~v-r~L~P~vvvl~  280 (412)
                          ..+....++.+. .+..++..     .....++.+..++.-.+.....+|+.| |.|+|.-.++.
T Consensus        87 ----~~~~~~~~~~~~-~d~~~~~~-----~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_          87 ----AYHSEIPVEILC-NDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             ----TSCCSSCEEEEC-SCTTTCCC-----CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----hhcccchhhhcc-chhhcccc-----ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence                444444455443 22222221     122334434444333444556778877 78999986665
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure