Citrus Sinensis ID: 048139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEcccccccEEcEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccHHHcccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEccccccccEEEEEEEEEEccccEEEEEEEEccccccccccEEEEEEHHHHHHcccccccEEcccccc
Coil and Loop (DISEMBL)
msisgiqglpleITVVGCynlddkewisrqdpyvcleygsskyrtktctdggknptfqeKFVLPLIEGLRELNVVVWNshtltpdefigsgRIQLHKALSQgfddaawplqtktg
Flexible Loop (DISEMBL)
msisgiqglpleITVVGCYNLDDKEWISRQDPYVCLEYGSSKYrtktctdggknpTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSqgfddaawplqtktg
Low Complexity Region (SEG)
MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG
Disordered region (IsUnstruct)
*****IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW*******
Disordered Region (DISOPRED)
******Q***LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK**
Disordered Region (DISEMBL)
MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG
Disordered Region (DISPRO)
****GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAA*PL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q0JBH9	144	Elicitor-responsive prote	no	no	0.834	0.666	0.268	4e-07
Q25AG5	144	Elicitor-responsive prote	N/A	no	0.834	0.666	0.268	4e-07
Q0JHU5	159	Elicitor-responsive prote	no	no	0.921	0.666	0.264	3e-06
A2WWV5	159	Elicitor-responsive prote	N/A	no	0.921	0.666	0.264	3e-06
Q9C8S6	147	C2 domain-containing prot	no	no	0.8	0.625	0.260	7e-06
Q8L7A4	385	Probable ADP-ribosylation	no	no	0.782	0.233	0.271	0.0002
Q8K0T7	2210	Protein unc-13 homolog C	yes	no	0.756	0.039	0.344	0.0002
Q8NB66	2214	Protein unc-13 homolog C	yes	no	0.756	0.039	0.344	0.0003
Q62770	2204	Protein unc-13 homolog C	yes	no	0.756	0.039	0.344	0.0003
A2RUW1	274	Toll-interacting protein	no	no	0.843	0.354	0.275	0.0005

>sp|Q0JBH9|ERG3_ORYSJ Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 6   IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL 65
           +QG  LE+ +VG   L++ +++   DPY  L+  S + ++   +  G +P + E F+  +
Sbjct: 2   VQG-TLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 66  IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
                EL + + +S + T D+F+G   I L    ++G
Sbjct: 61  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEG 97

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q25AG5|ERG3_ORYSI Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica GN=ERG3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 6   IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL 65
           +QG  LE+ +VG   L++ +++   DPY  L+  S + ++   +  G +P + E F+  +
Sbjct: 2   VQG-TLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60

Query: 66  IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
                EL + + +S + T D+F+G   I L    ++G
Sbjct: 61  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEG 97

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JHU5|ERG1_ORYSJ Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEW---ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTF 57
           M+ SG+    LE+ +V    L   ++   I + DPYV ++Y S + ++    D GKNP++
Sbjct: 1   MAGSGV----LEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSW 56

Query: 58  QEKFVLPL----IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL 110
            E F   +      G  +L + + +  T + D+F+G   I +   +S G +   W +
Sbjct: 57  NEVFKFQINSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEM 113

May play a role in plant defense signaling. Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WWV5|ERG1_ORYSI Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica GN=ERG1 PE=2 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEW---ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTF 57
           M+ SG+    LE+ +V    L   ++   I + DPYV ++Y S + ++    D GKNP++
Sbjct: 1   MAGSGV----LEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSW 56

Query: 58  QEKFVLPL----IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL 110
            E F   +      G  +L + + +  T + D+F+G   I +   +S G +   W +
Sbjct: 57  NEVFKFQINSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEM 113

May play a role in plant defense signaling. Isoform 2 binds to phospholipids in a Ca(2+)-dependent manner in response to pathogen elicitors.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9C8S6|Y1322_ARATH C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana GN=At1g63220 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           LE+ +V    L+D ++++  DPYV L   +   ++      G  P + E F+  + EG  
Sbjct: 6   LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
           EL   +++    T D+ +G   I L     +G
Sbjct: 66  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 97

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           +++ VV   NL  ++ ++  DPYV L  G    +T+   +   NP + E  +L + E + 
Sbjct: 231 IKVNVVKGTNLAVRDVMT-SDPYVILALGQQSVKTRVIKNN-LNPVWNETLMLSIPEPMP 288

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
            L V+V++  T + D+F+G   I +   +S  
Sbjct: 289 PLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAA 320

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 11   LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
            + ITVV    L  K+     DPYV ++ G +K RTKT   G  NP + EKF         
Sbjct: 1218 ITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIF-GNLNPVWDEKFFFECHNSTD 1276

Query: 71   ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103
             + V VW+      D+ I S   Q  K  S  F
Sbjct: 1277 RIKVRVWDE-----DDDIKSRVKQHFKKESDDF 1304

May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses.

Mus musculus (taxid: 10090)

>sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 11   LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
            + ITVV    L  K+     DPYV ++ G +K RTKT   G  NP + EKF         
Sbjct: 1222 ITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIF-GNLNPVWDEKFYFECHNSTD 1280

Query: 71   ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103
             + V VW+      D+ I S   Q  K  S  F
Sbjct: 1281 RIKVRVWDE-----DDDIKSRVKQHFKKESDDF 1308

May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses.

Homo sapiens (taxid: 9606)

>sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 11   LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
            + ITVV    L  K+     DPYV ++ G +K RTKT   G  NP + EKF         
Sbjct: 1212 ITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIF-GNLNPVWDEKFYFECHNSTD 1270

Query: 71   ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF 103
             + V VW+      D+ I S   Q  K  S  F
Sbjct: 1271 RIKVRVWDE-----DDDIKSRVKQHFKKESDDF 1298

May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses.

Rattus norvegicus (taxid: 10116)

>sp|A2RUW1|TOLIP_RAT Toll-interacting protein OS=Rattus norvegicus GN=Tollip PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           L ITVV    L     ++R DPY  L  G + Y T T  +G KNP + +     +  G+ 
Sbjct: 55  LSITVVQA-KLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVD 113

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
              + +++    + D+ I    I + ++L QG  +  W
Sbjct: 114 SFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEW 151

Component of the signaling pathway of IL-1 and Toll-like receptors. Inhibits cell activation by microbial products. Recruits IRAK1 to the IL-1 receptor complex. Inhibits IRAK1 phosphorylation and kinase activity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
224067252	250	predicted protein [Populus trichocarpa]	1.0	0.46	0.791	1e-51
356497514	260	PREDICTED: uncharacterized protein LOC10	0.991	0.438	0.807	3e-51
356537593	258	PREDICTED: uncharacterized protein LOC10	0.991	0.441	0.807	2e-50
255538204	247	protein binding protein, putative [Ricin	1.0	0.465	0.791	7e-50
358343839	279	Elicitor-responsive protein [Medicago tr	1.0	0.412	0.756	2e-49
225428883	247	PREDICTED: uncharacterized protein LOC10	1.0	0.465	0.808	4e-49
225458705	298	PREDICTED: uncharacterized protein LOC10	1.0	0.385	0.782	2e-48
224056180	240	predicted protein [Populus trichocarpa]	1.0	0.479	0.773	6e-48
239835409	238	hypothetical protein [Nicotiana benthami	0.982	0.474	0.787	9e-48
358343853	247	Unc-13-like protein [Medicago truncatula	0.991	0.461	0.745	7e-47

>gi|224067252|ref|XP_002302431.1| predicted protein [Populus trichocarpa] gi|222844157|gb|EEE81704.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 106/115 (92%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEK 60
           M+I GIQG PLE+TVV CYNL+DKEWISRQDPYV +EYG++KYRTKTCTDGG+NP FQEK
Sbjct: 1   MAICGIQGFPLEVTVVACYNLEDKEWISRQDPYVSVEYGNTKYRTKTCTDGGRNPVFQEK 60

Query: 61  FVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           F+  L+EGLREL+VVVWNSHTL+ DE IG+GRIQLHKALSQGFDDA+WP+Q+KTG
Sbjct: 61  FIFTLVEGLRELSVVVWNSHTLSADEHIGTGRIQLHKALSQGFDDASWPIQSKTG 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497514|ref|XP_003517605.1| PREDICTED: uncharacterized protein LOC100778230 [Glycine max]

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 104/114 (91%)

Query: 2   SISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKF 61
           SI+GIQG PLE+TVV C  L D EWISRQDPYVC+EYGS+K+RT+TCTDGGKNP FQEKF
Sbjct: 3   SITGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKF 62

Query: 62  VLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           + PLIEGLRELNV+VWNS+TLT D+FIGSG+IQLHK LSQGFDD+AWPLQTKTG
Sbjct: 63  IFPLIEGLRELNVLVWNSNTLTLDDFIGSGKIQLHKVLSQGFDDSAWPLQTKTG 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537593|ref|XP_003537311.1| PREDICTED: uncharacterized protein LOC100776879 [Glycine max]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 104/114 (91%)

Query: 2   SISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKF 61
           SI+GIQG PLE+TVV C  L D EWISRQDPYVC+EYGS+K+RT+TCTDGGKNP FQEKF
Sbjct: 3   SITGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKF 62

Query: 62  VLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           + PLIEGLRELNV+VWNS+TLT D+FIGSG+IQLHK LSQGFDD+AWPLQTKTG
Sbjct: 63  IFPLIEGLRELNVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKTG 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538204|ref|XP_002510167.1| protein binding protein, putative [Ricinus communis] gi|223550868|gb|EEF52354.1| protein binding protein, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 102/115 (88%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEK 60
           MSI G+QGLPLE+TVVGC NLDDKEW+SRQDPYV LEYG +KYRTKTCTDGG+NPTFQEK
Sbjct: 1   MSIFGVQGLPLEVTVVGCCNLDDKEWLSRQDPYVSLEYGGAKYRTKTCTDGGRNPTFQEK 60

Query: 61  FVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           F+  LIEGLRELNV VWN+ TL+ DE IGSGRIQL K LSQG+DDA+WPLQ+K G
Sbjct: 61  FIFTLIEGLRELNVTVWNNRTLSADEQIGSGRIQLQKVLSQGYDDASWPLQSKAG 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343839|ref|XP_003636003.1| Elicitor-responsive protein [Medicago truncatula] gi|355501938|gb|AES83141.1| Elicitor-responsive protein [Medicago truncatula] gi|388520725|gb|AFK48424.1| unknown [Medicago truncatula]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 104/115 (90%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEK 60
           M +SGIQG PLE+TVV C  L D EWISRQDPYVC+EY S+K+RT+TCTDGGKNP FQEK
Sbjct: 1   MMMSGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCIEYASTKFRTRTCTDGGKNPVFQEK 60

Query: 61  FVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           F+LPLIEGLRE+NVVVWNS+T++ D+FIG+G++QLHK LSQGFDD++WPLQTKTG
Sbjct: 61  FILPLIEGLREINVVVWNSNTVSFDDFIGTGKVQLHKVLSQGFDDSSWPLQTKTG 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428883|ref|XP_002285315.1| PREDICTED: uncharacterized protein LOC100241815 [Vitis vinifera] gi|296090460|emb|CBI40279.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (503), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 102/115 (88%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEK 60
           MSISGIQG  LE+TVVGC  L D EWISRQDPYVCLEYGS+K+RT+TCTDGGKNPTFQEK
Sbjct: 1   MSISGIQGQLLEVTVVGCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEK 60

Query: 61  FVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           FV  LIEGLRE+N VVWNS+TLT D+FIGSG+IQL K LSQG+DD AWPLQTKTG
Sbjct: 61  FVFTLIEGLREVNAVVWNSNTLTYDDFIGSGKIQLQKVLSQGYDDTAWPLQTKTG 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458705|ref|XP_002283001.1| PREDICTED: uncharacterized protein LOC100252428 [Vitis vinifera] gi|302142274|emb|CBI19477.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 102/115 (88%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEK 60
           MSISGIQG  LE+TVVGC NL D EWISRQDPYVCLEYG+ +++TKTCTDGGKNP+FQEK
Sbjct: 1   MSISGIQGHSLEVTVVGCSNLRDTEWISRQDPYVCLEYGNFRHQTKTCTDGGKNPSFQEK 60

Query: 61  FVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           F+  LIEGLRELNVVVWNS+TLT D+FIGSG+IQLHK LSQG+DD AWP+Q K G
Sbjct: 61  FICTLIEGLRELNVVVWNSNTLTADDFIGSGKIQLHKVLSQGYDDTAWPIQGKYG 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056180|ref|XP_002298742.1| predicted protein [Populus trichocarpa] gi|118486205|gb|ABK94945.1| unknown [Populus trichocarpa] gi|222846000|gb|EEE83547.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 101/115 (87%)

Query: 1   MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEK 60
           MS+SGIQG  LE+TVVGC  L D EWISRQDPYVC+EYGS+K+RT+TCTDGGKNPTFQEK
Sbjct: 1   MSVSGIQGHLLEVTVVGCTKLKDTEWISRQDPYVCVEYGSNKFRTRTCTDGGKNPTFQEK 60

Query: 61  FVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           F+  LIEGLRE+ V VWNS+TLT D+FIGSG+IQLHK LSQGFDD  WPLQ+KTG
Sbjct: 61  FMFTLIEGLREIGVAVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDTTWPLQSKTG 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239835409|dbj|BAH78126.1| hypothetical protein [Nicotiana benthamiana]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 101/113 (89%)

Query: 3   ISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFV 62
           ISGIQG  LE+TVV C  L D EWISRQDPYVCLEYGS+K+RT+TCTDGGKNPTFQEKFV
Sbjct: 4   ISGIQGQLLEVTVVSCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEKFV 63

Query: 63  LPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
             LIEGLRE+NVVVWNS+T++ D+FIGSG+IQLHK LSQG+DD AWP+QTKTG
Sbjct: 64  FTLIEGLREINVVVWNSNTISYDDFIGSGKIQLHKVLSQGYDDTAWPIQTKTG 116

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343853|ref|XP_003636010.1| Unc-13-like protein [Medicago truncatula] gi|217072348|gb|ACJ84534.1| unknown [Medicago truncatula] gi|355501945|gb|AES83148.1| Unc-13-like protein [Medicago truncatula]

 Score =  190 bits (483), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 99/114 (86%)

Query: 2   SISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKF 61
           +I+GIQG PLE+TVV C  L D EWISRQDPYVCLEY ++K+RTKTCTDGGKNP FQEKF
Sbjct: 6   TIAGIQGQPLEVTVVCCSKLKDTEWISRQDPYVCLEYATNKFRTKTCTDGGKNPVFQEKF 65

Query: 62  VLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           V  LIEGLRE+NV VWN +T+T D+FIG+G++QLHK LSQGFDD+AWPLQTK G
Sbjct: 66  VFSLIEGLREINVAVWNYNTVTSDDFIGTGKVQLHKVLSQGFDDSAWPLQTKNG 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2124321	247	AT4G34150 "AT4G34150" [Arabido	0.982	0.457	0.654	7e-38
TAIR|locus:2038461	147	AT1G63220 "AT1G63220" [Arabido	0.8	0.625	0.260	2.3e-07
TAIR|locus:2099946	156	AT3G55470 "AT3G55470" [Arabido	0.895	0.660	0.275	1.3e-06
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.782	0.233	0.290	1.5e-05
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	0.739	0.515	0.295	3e-05
MGI|MGI:1891808	274	Tollip "toll interacting prote	0.843	0.354	0.275	6e-05
RGD|1304676	274	Tollip "toll interacting prote	0.843	0.354	0.275	6e-05
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.921	0.189	0.278	6.9e-05
UNIPROTKB|Q3B8H2	269	tollip-a "Toll-interacting pro	0.930	0.397	0.254	9.6e-05
UNIPROTKB|Q6DFR0	269	tollip "Toll-interacting prote	0.930	0.397	0.254	9.6e-05

TAIR|locus:2124321 AT4G34150 "AT4G34150" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 74/113 (65%), Positives = 87/113 (76%)

Query:     3 ISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFV 62
             ++GIQG  LE+TVVGC  L D EW SRQDPYV LEYG   +RT+TCTDGGKN  FQEKF+
Sbjct:     4 MAGIQGQILEVTVVGCQKLKDTEWFSRQDPYVVLEYGGRSHRTRTCTDGGKNAVFQEKFI 63

Query:    63 LPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
               LIEGLR+L V VWNS+TL+ D+FIG+  IQL K LSQ +DD  W LQ+KTG
Sbjct:    64 FTLIEGLRDLKVAVWNSNTLSTDDFIGNATIQLQKVLSQEYDDCTWTLQSKTG 116

GO:0009409 "response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2038461 AT1G63220 "AT1G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query:    11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
             LE+ +V    L+D ++++  DPYV L   +   ++      G  P + E F+  + EG  
Sbjct:     6 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query:    71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
             EL   +++    T D+ +G   I L     +G
Sbjct:    66 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 97

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099946 AT3G55470 "AT3G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 30/109 (27%), Positives = 55/109 (50%)

Query:    11 LEITVVGCYNLDDKEWISRQDPYVCLEY-GSSKYRTKTCTDGGKNPTFQEKFV----LPL 65
             LE++++    L   +++ + DPYV ++Y G ++  +    DGG+NPT+ +K       P 
Sbjct:     6 LEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKEDGGRNPTWNDKLKWRAEFPG 65

Query:    66 IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ-TK 113
                  +L V V +  T + D+FIG   + + + L  G +     L+ TK
Sbjct:    66 SGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELRPTK 114

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/93 (29%), Positives = 48/93 (51%)

Query:     8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
             GL +++ VV   NL  ++ +   DPYV L  G    +T+   +   NP + E  +L + E
Sbjct:   229 GL-IKVNVVKGTNLAVRD-VMTSDPYVILALGQQSVKTRVIKNN-LNPVWNETLMLSIPE 285

Query:    68 GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALS 100
              +  L V+V++  T + D+F+G   I +   +S
Sbjct:   286 PMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVS 318

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 26/88 (29%), Positives = 45/88 (51%)

Query:     8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
             GL L I V    NL  ++ +S  DP+V +  GS K +T+   +   NP + E+  L L  
Sbjct:     6 GL-LRIRVKRGINLAQRDTLS-SDPFVVITMGSQKLKTRV-VENNCNPEWNEELTLALRH 62

Query:    68 GLRELNVVVWNSHTLTPDEFIGSGRIQL 95
                 +N++V++  T T  + +G  +I +
Sbjct:    63 PDEPVNLIVYDKDTFTSHDKMGDAKIDI 90

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1891808 Tollip "toll interacting protein" [Mus musculus (taxid:10090)]

 Score = 101 (40.6 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 27/98 (27%), Positives = 45/98 (45%)

Query:    11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
             L ITVV    L     ++R DPY  L  G + Y T T  +G KNP + +     +  G+ 
Sbjct:    55 LSITVVQA-KLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVD 113

Query:    71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
                + +++    + D+ I    I + ++L QG  +  W
Sbjct:   114 SFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEW 151

GO:0005150 "interleukin-1, Type I receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0016310 "phosphorylation" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032183 "SUMO binding" evidence=ISO

GO:0033235 "positive regulation of protein sumoylation" evidence=ISO

GO:0035325 "Toll-like receptor binding" evidence=ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|1304676 Tollip "toll interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 101 (40.6 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 27/98 (27%), Positives = 45/98 (45%)

Query:    11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
             L ITVV    L     ++R DPY  L  G + Y T T  +G KNP + +     +  G+ 
Sbjct:    55 LSITVVQA-KLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVD 113

Query:    71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
                + +++    + D+ I    I + ++L QG  +  W
Sbjct:   114 SFYLEIFDERAFSMDDRIAWTHITIPESLKQGQVEDEW 151

GO:0005150 "interleukin-1, Type I receptor binding" evidence=IPI

GO:0006954 "inflammatory response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA;ISO

GO:0016310 "phosphorylation" evidence=ISO;ISS

GO:0016604 "nuclear body" evidence=IDA

GO:0019900 "kinase binding" evidence=IEA;ISO

GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IPI

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0032183 "SUMO binding" evidence=IPI

GO:0033235 "positive regulation of protein sumoylation" evidence=IDA

GO:0035325 "Toll-like receptor binding" evidence=IEA;ISO

GO:0045087 "innate immune response" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 32/115 (27%), Positives = 61/115 (53%)

Query:     6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKT-CTDGGKNPTFQEKFVLP 64
             ++G+ L +TV+    +  ++ + + DPYV L    S  ++KT   +   NP + + F   
Sbjct:   433 VRGV-LSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFV 491

Query:    65 LIEGLRELNVV-VWNSHTLTPDEFIGSGRIQLHKAL-SQGFDDAAW-PL-QTKTG 115
             + +GL ++ V+ VW+  T   D +IG   + L + +  + + D  W PL ++KTG
Sbjct:   492 VEDGLHDMLVLEVWDHDTFGKD-YIGRCILTLTRVIMEEEYKD--WYPLDESKTG 543

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q3B8H2 tollip-a "Toll-interacting protein A" [Xenopus laevis (taxid:8355)]

 Score = 99 (39.9 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 28/110 (25%), Positives = 48/110 (43%)

Query:     1 MSISGIQGLP--LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQ 58
             +  SG+ G    L ITVV    L     ++R DPY  +  G + Y T T  +G KNP + 
Sbjct:    43 LQYSGVMGTMGRLSITVVQA-KLAKNYGMTRMDPYCRIRLGYAVYETPTAHNGAKNPRWN 101

Query:    59 EKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
             +     +  G+    + +++    + D+ I    I + + L +G     W
Sbjct:   102 KVIQCTIPPGVDSFYLEIFDERAFSMDDRIAWTHITIPETLKEGKHVDEW 151

GO:0016310 "phosphorylation" evidence=ISS

UNIPROTKB|Q6DFR0 tollip "Toll-interacting protein" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 99 (39.9 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 28/110 (25%), Positives = 48/110 (43%)

Query:     1 MSISGIQGLP--LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQ 58
             +  SG+ G    L ITVV    L     ++R DPY  +  G + Y T T  +G KNP + 
Sbjct:    43 LQYSGVMGTMGRLSITVVQA-KLAKNYGMTRMDPYCRIRLGYAVYETPTAHNGAKNPRWN 101

Query:    59 EKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
             +     +  G+    + +++    + D+ I    I + + L +G     W
Sbjct:   102 KVIQCTIPPGVDSFYLEIFDERAFSMDDRIAWTHITIPETLKEGKHVDEW 151

GO:0016310 "phosphorylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II001127 hypothetical protein (250 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
cd00030	102	cd00030, C2, C2 domain	6e-18
pfam00168	85	pfam00168, C2, C2 domain	4e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	9e-15
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	7e-11
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	4e-10
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	4e-09
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	9e-09
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	7e-08
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	1e-06
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	1e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-05
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	3e-05
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	9e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-04
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-04
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	4e-04
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-04
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-04
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	8e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	0.002
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	0.002

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 72.1 bits (177), Expect = 6e-18
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGL 69
           L +TV+   NL  K+   + DPYV +  G   K++TK   +   NP + E F  P+++  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT-LNPVWNETFEFPVLDPE 59

Query: 70  -RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
              L V VW+    + D+F+G   I L + L  G +   W
Sbjct: 60  SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 64.6 bits (158), Expect = 4e-15
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 11 LEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLI- 66
          L +TV+   NL  K+   + DPYV +  G       +TK       NP + E F   +  
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVV-KNTLNPVWNETFTFEVTL 59

Query: 67 EGLRELNVVVWNSHTLTPDEFIG 89
            L EL + V++      D+FIG
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIG 82

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 64.0 bits (156), Expect = 9e-15
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
           L + ++   NL  K+   + DPYV +        K +TK   +   NP + E F   +  
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTL-NPVWNETFEFEVPP 60

Query: 68  -GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDD 105
             L EL + V++      D+FIG   I L   L  G  +
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 54.6 bits (132), Expect = 7e-11
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFV----LPLI 66
           LE+ ++    L D +++ + DPYV ++  + + ++K     G+NP + EKF      P  
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62

Query: 67  EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
            G  +L + + +    + D+FIG   I L     +G
Sbjct: 63  GGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLE-YGSSKYRTKTCTDGGKNPTFQEKFVLPL---- 65
           LEIT++   +L +     +   Y  +    S K  T    DGG NPT+ E    PL    
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61

Query: 66  -IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAA 107
             +G   L + V+       D+ IG  R+ L K L  G   A 
Sbjct: 62  LQQGRLALTIEVYCERPSLGDKLIGEVRVPL-KDLLDGASPAG 103

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 52.9 bits (128), Expect = 4e-10
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 12/91 (13%)

Query: 9  LPLEITVVGCYNLDDKEWISRQ--DPYVCLE-YG-----SSKYRTKTCTDGGKNPTFQEK 60
          L L I ++    L   +       DPYV +E +G     S+K++TK   + G NP + E 
Sbjct: 2  LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61

Query: 61 FVLPLIEGLRELNVVVW--NSHTLTPDEFIG 89
          F   +     EL  + +         D+F+G
Sbjct: 62 FEFDVTVP--ELAFLRFVVYDEDSGDDDFLG 90

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           L ITVV    L     ++R DPY  +  G + Y T T  +G KNP + +     L EG+ 
Sbjct: 4   LSITVVQA-KLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVD 62

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFD-DAAWPLQTKTG 115
            + + +++    T DE I    I + +++  G   D  + L  K G
Sbjct: 63  SIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQG 108

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 49.2 bits (118), Expect = 9e-09
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GL 69
           L + V+   NL +K  + +QDPY  L  G    +TKT   GG++P + E+    + E   
Sbjct: 3   LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62

Query: 70  RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113
             L V V++     PD  IG   + L  AL +G  D  + L  K
Sbjct: 63  PILKVAVFDDDKRKPD-LIGDTEVDLSPALKEGEFDDWYELTLK 105

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 46.9 bits (112), Expect = 7e-08
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 31 DPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNSHTLTPDEFIG 89
          DPYV    G+ KY++K C+    NP + E+F L L  +  + L + VW+  T   DEFIG
Sbjct: 22 DPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80

Query: 90 SGRIQL 95
             I L
Sbjct: 81 RCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 11  LEITVVGCYNLDDKEWISRQ-DPYV---CLEYGSSKYRTKTCTD-GGKNPTFQEKFVLPL 65
           LEIT+  C NL   +   ++  PYV    L   S   + KT    G  NP F E     +
Sbjct: 17  LEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVV 76

Query: 66  IEGL---RELNVVVWNSHTLTPDEFIGSGRIQL-----HKALSQGFD 104
              L   R+L V VW+S TL    F+G   I L         SQ F 
Sbjct: 77  EADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 10  PLEITVVGCYNLDDKEWISRQDPYVCLEY-GSSKYRTKTCTDGGKNPTFQEKFVLPLIEG 68
            L+ITV     L       + DPYV +   G    +T+       NP + E F + L+  
Sbjct: 3   QLQITVE-SAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTV-LVTP 59

Query: 69  LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ 101
              L   VW+ HTL  D  +G   + L   L  
Sbjct: 60  QSTLEFKVWSHHTLKADVLLGEASLDLSDILKN 92

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           + ITVV    L  K+     DPYV ++ G +K RTKT      NP + EKF         
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKT-IPQNLNPVWNEKFHFECHNSSD 61

Query: 71  ELNVVVWNSH-----------TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114
            + V VW+             T   D+F+G   I++ + LS G  D  + L+ +T
Sbjct: 62  RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEV-RTLS-GEMDVWYNLEKRT 114

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 11  LEITVVGCYNL---DDKEWISRQDPYV--CL---EYGSSKYRTKTCTDGGKNPTFQE--K 60
           LE+ +  C NL   D+K+   R +PYV   L   +   SK +T        NP F E  K
Sbjct: 16  LEVHIKECRNLAYADEKK--KRSNPYVKVYLLPDKSKQSKRKTSVKK-NTTNPVFNETLK 72

Query: 61  FVLP--LIEGLRELNVVVWNSHTLTPDEFIGSGRIQL 95
           + +    +E  R L + VW+      + F+G   I L
Sbjct: 73  YHISKSQLET-RTLQLSVWHHDRFGRNTFLGEVEIPL 108

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 31  DPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPLIEG--LRELNVVVWNSHTLT 83
           DPYV L+        +K +TKT      NP + E F   L      R L++ VW+    T
Sbjct: 35  DPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93

Query: 84  PDEFIGS 90
            ++F+GS
Sbjct: 94  RNDFMGS 100

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 13 ITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLREL 72
          + V     L  ++     DPYV ++      R+    D   +P F  + +    +    +
Sbjct: 7  VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPI 65

Query: 73 NVVVWNSHTLTPDEFIGSGRIQ 94
           + VWNS+ L  DEF+G   + 
Sbjct: 66 KIQVWNSNLLC-DEFLGQATLS 86

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 31  DPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL---IEGLRELNVVVWNSHTLTPDEF 87
           D    + +   K +T+   +   NP + E F  PL    +    L +VV +   +  +  
Sbjct: 16  DRIAKVTFRGVKKKTRVLENEL-NPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL 74

Query: 88  IGSGRIQLHKALSQGFDDAAWPL 110
           IGS  + L   +S+G  +   PL
Sbjct: 75  IGSATVSLQDLVSEGLLEVTEPL 97

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 31  DPYVCLEYGSSKYRTKTCTDGGKNPTFQEKF--VLPLIEGLRELNVVVWNSHTLTPDEFI 88
           DPYV +  G+  +++K   +   NP + E +  V+  + G  EL + +++      D+F+
Sbjct: 29  DPYVIVRVGAQTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQ-ELEIELFDEDP-DKDDFL 85

Query: 89  GSGRIQLHKALSQGFDDAAWPLQ 111
           G   I L     +GF D   PL+
Sbjct: 86  GRLSIDLGSVEKKGFIDEWLPLE 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 31 DPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVW-NSHTLT-----P 84
          D Y   +YG    RT+T  D   NP + E++  P+ +    L V V+ NS +       P
Sbjct: 25 DAYCVAKYGPKWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQP 83

Query: 85 DEFIGSGRIQL 95
          D  IG  RI+L
Sbjct: 84 DVLIGKVRIRL 94

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 11 LEITVVGCYNLDDKEWIS-----RQDPYVCLEY-GSSKYRTKTCTDGGK---NPTFQEKF 61
          L + V+   NL      S     + DP+V     G   ++TKT     K   NP + E F
Sbjct: 1  LTVDVISAENL-----PSADRNGKSDPFVKFYLNGEKVFKTKTI----KKTLNPVWNESF 51

Query: 62 VLPLIEGLR-ELNVVVWNSHTLTPDEFIGSGRIQL 95
           +P+   +R  L V V++      D+ +GS  I L
Sbjct: 52 EVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDL 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 15 VVGCYNLDDKEWISRQDPYVCLEYGSSKYRTK-TCTDGGKNPTFQEKF----VLPLIEGL 69
          VV   NL  K+   + DPY+ ++ G  K   +        NP F + F     LP   G 
Sbjct: 6  VVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP---GN 62

Query: 70 RELNVVVWNSHTLTPDEFIGSGRIQL 95
            L + V +   L  D+ IG   I L
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYGSSKYRTK--TCTDGGKNPTFQEKFVLPL- 65
           L + V+   NL   +     DPYV   L  G  K + K  +   G  NP F E F   + 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 66  IEGLRELNVV--VWNSHTLTPDEFIGSGRI 93
            E L E+++V  V +  ++  +E IG   +
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 31  DPYVCLEY------GSSKYRTKTCTDGGKNPTFQEKFV---LPL--IEGLRELNVVVWNS 79
           DPYV   Y       ++K +TK      +NPTF E  V   LP+  ++  R L V VW+ 
Sbjct: 34  DPYVKT-YLLPDPQKTTKRKTKVVRKT-RNPTFNEMLVYDGLPVEDLQQ-RVLQVSVWSH 90

Query: 80  HTLTPDEFIGSGRIQLHK 97
            +L  +EF+G   I L K
Sbjct: 91  DSLVENEFLGGVCIPLKK 108

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 29/105 (27%)

Query: 31  DPYVCLEY-GSSKYRT-------KTCTDGGKNPTFQEKFVLPLIEG-------------- 68
           DP+  +    SSK  T       KT      NP F E F   L  G              
Sbjct: 20  DPFARVTLNYSSKTDTKRTKVKKKTN-----NPRFDEAFYFELTIGFSYEKKSFKVEEED 74

Query: 69  --LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ 111
               EL V +W++  ++ D+F+G  RI L      G   A + LQ
Sbjct: 75  LEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.95
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.94
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.93
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.92
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.92
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.92
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.92
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.91
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.91
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.91
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.91
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.91
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.91
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.91
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.9
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.9
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.9
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.9
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.9
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.9
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.9
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.9
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.9
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.9
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.9
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.9
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.9
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.89
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.89
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.89
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.89
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.89
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.89
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.89
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.89
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.89
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.89
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.88
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.88
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.88
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.88
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.88
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.88
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.88
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.88
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.88
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.87
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.87
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.87
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.87
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.87
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.87
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.87
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.87
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.86
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.86
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.86
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.86
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.86
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.86
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.85
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.85
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.85
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.85
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.85
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.84
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.84
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.84
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.84
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.83
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.83
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.83
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.82
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.82
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.81
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.81
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.81
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.81
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.81
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.81
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.8
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.8
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.8
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.8
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.79
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.79
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.79
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.79
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.77
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.77
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.76
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.75
PLN03008	868	Phospholipase D delta	99.74
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.73
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.72
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.68
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.68
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.66
PLN02223	537	phosphoinositide phospholipase C	99.55
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.55
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.55
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.52
PLN02270	808	phospholipase D alpha	99.49
PLN02952	599	phosphoinositide phospholipase C	99.47
PLN02230	598	phosphoinositide phospholipase C 4	99.45
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.43
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.43
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.42
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.42
PLN02222	581	phosphoinositide phospholipase C 2	99.4
PLN02228	567	Phosphoinositide phospholipase C	99.35
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.31
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.26
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.24
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.11
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.04
PLN02352	758	phospholipase D epsilon	98.98
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.97
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.88
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.88
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.74
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.53
PLN02964	644	phosphatidylserine decarboxylase	98.41
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.41
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.19
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.16
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.13
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	98.07
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	98.04
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.84
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.8
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.76
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.45
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.31
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.21
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.19
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.1
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.92
PF15627	156	CEP76-C2: CEP76 C2 domain	96.86
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	96.76
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.48
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.41
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.87
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.63
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	95.12
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	95.06
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.66
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.64
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.45
KOG1327	529	consensus Copine [Signal transduction mechanisms]	94.25
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	93.98
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	92.68
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	92.28
KOG0694	694	consensus Serine/threonine protein kinase [Signal	86.6

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.95  E-value=9e-27  Score=135.51  Aligned_cols=106  Identities=26%  Similarity=0.390  Sum_probs=93.0

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      .|+|+|+|++|+++++.+ .+.+||||++.++..+++|+++.+++.||.|||+|.|.+.+....|.|+|||++.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            378999999999998777 7899999999999999999998765899999999999997666789999999999999999


Q ss_pred             eEEEEEEcc-hhhccCeeeeEEecccCC
Q 048139           88 IGSGRIQLH-KALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        88 lG~~~v~l~-~l~~~~~~~~~~~L~~~~  114 (115)
                      ||.+.+++. .+..+.....|++|.+++
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~  107 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQ  107 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCcc
Confidence            999999996 455555578888998754

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.94  E-value=4.9e-25  Score=129.48  Aligned_cols=103  Identities=23%  Similarity=0.317  Sum_probs=90.7

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC------CCceEEEEEEeCCCCCC
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE------GLRELNVVVWNSHTLTP   84 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~------~~~~L~~~v~~~~~~~~   84 (115)
                      |+|+|++|++|+..+..+.+||||++.++..+++|+++.+ +.||.|||.|.|.+..      ....|.++|||++..++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            5799999999998888888999999999999999999887 8999999999999854      46789999999998888


Q ss_pred             CceeEEEEEEcchhh--ccCeeeeEEecccCC
Q 048139           85 DEFIGSGRIQLHKAL--SQGFDDAAWPLQTKT  114 (115)
Q Consensus        85 ~~~lG~~~v~l~~l~--~~~~~~~~~~L~~~~  114 (115)
                      +++||++.+++.++.  .+.....||+|.++.
T Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~  111 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP  111 (126)
T ss_pred             CceeEEEEEEHHHhhccCCCcccEEEECcCCC
Confidence            999999999999987  445567888997654

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.93  E-value=4.9e-25  Score=129.00  Aligned_cols=104  Identities=28%  Similarity=0.470  Sum_probs=92.7

Q ss_pred             eEEEEEeeecC---CCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC---
Q 048139           10 PLEITVVGCYN---LDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT---   83 (115)
Q Consensus        10 ~l~v~i~~a~~---l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~---   83 (115)
                      .|+|+|++|++   |+..+..|.+||||.+.++.++.+|+++.+ +.||.|||+|.|.+......|.|+|||++..+   
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~   79 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKE   79 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCccccc
Confidence            38999999999   777888899999999999999999999987 99999999999999655568999999998763   


Q ss_pred             ---CCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           84 ---PDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        84 ---~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                         +|++||++.+++..+..+.....||+|.+.+
T Consensus        80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~  113 (126)
T cd08379          80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN  113 (126)
T ss_pred             cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC
Confidence               8999999999999998888888899998643

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.92  E-value=2.2e-24  Score=128.98  Aligned_cols=98  Identities=28%  Similarity=0.455  Sum_probs=90.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      .-|.|+|.|.+|.+|...+..+++||||.+.+++++.+|+++.+ +.||+|||.|.|.+......|+++|||++.++.||
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD   82 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDD   82 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecC-CCCCcccceEEEEecCCCceEEEEEEeCCCCCccc
Confidence            46889999999999998888789999999999999999999876 99999999999999888899999999999999999


Q ss_pred             eeEEEEEEcchhhccCeee
Q 048139           87 FIGSGRIQLHKALSQGFDD  105 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~  105 (115)
                      ++|.+++++.+++..+...
T Consensus        83 ~mG~A~I~l~p~~~~~~~~  101 (168)
T KOG1030|consen   83 FMGEATIPLKPLLEAQKMD  101 (168)
T ss_pred             ccceeeeccHHHHHHhhhh
Confidence            9999999999998865544

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.92  E-value=1.8e-23  Score=122.06  Aligned_cols=104  Identities=27%  Similarity=0.444  Sum_probs=93.0

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      .|+|+|++|++|+..+..+.+||||++.+.+ ..++|+++.+ +.||.|+|.|.|.+......|.|+|||++..+++++|
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i   79 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM   79 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence            3789999999999888888999999999986 6889999887 9999999999999865567899999999988899999


Q ss_pred             EEEEEEcchhhccCeeeeEEecccCC
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      |++.+++.++..++....|++|.++.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~~~  105 (121)
T cd04042          80 GSAFVDLSTLELNKPTEVKLKLEDPN  105 (121)
T ss_pred             EEEEEEHHHcCCCCCeEEEEECCCCC
Confidence            99999999999888888899997654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.92  E-value=2.2e-23  Score=120.81  Aligned_cols=105  Identities=30%  Similarity=0.485  Sum_probs=93.5

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC-CceEEEEEEeCCCCCCCcee
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG-LRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~L~~~v~~~~~~~~~~~l   88 (115)
                      .|+|+|++|++|+..+..+.+|||+++.+.+..++|+++.+ +.||.|+|.|.|.+... ...|.++|||++..+++++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence            47899999999998888888999999999999999999887 99999999999998543 67899999999988889999


Q ss_pred             EEEEEEcchhhccCeeeeEEecccCCC
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |++.+++.++..++....|++|.+..|
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~~G  106 (116)
T cd08376          80 GRCEIDLSALPREQTHSLELELEDGEG  106 (116)
T ss_pred             EEEEEeHHHCCCCCceEEEEEccCCCc
Confidence            999999999988777888889876543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.92  E-value=1.2e-23  Score=122.25  Aligned_cols=103  Identities=29%  Similarity=0.452  Sum_probs=90.1

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCce
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~   87 (115)
                      |.|+|+|++|++|+..+..+.+||||++.++...++|+++.+++.||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            57999999999999988889999999999998889999875547899999999999954 4578999999998765 889


Q ss_pred             eEEEEEEcchhhccCeeeeEEeccc
Q 048139           88 IGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        88 lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      ||++.+++.++..++...+|++|..
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~  104 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTL  104 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEecc
Confidence            9999999999987666678888864

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.91  E-value=2.4e-23  Score=120.92  Aligned_cols=102  Identities=22%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----C--eEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEe
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG-----S--SKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWN   78 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~--~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~   78 (115)
                      +|+|+|++|++|+..+ .|.+|||+++++.     .  .+++|++..+ +.||.|||.|.|.+..    ....|.|+|||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence            5899999999998876 4889999999973     1  3568888865 9999999999999953    23468999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ++..+++++||++.+++..+..++....|++|..+
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            98777899999999999999988887888888653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.91  E-value=1.2e-23  Score=122.96  Aligned_cols=101  Identities=32%  Similarity=0.362  Sum_probs=88.8

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-c---CCCceEEEEEEe
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-I---EGLRELNVVVWN   78 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~---~~~~~L~~~v~~   78 (115)
                      .+.|.|.|++|++|+..+ .+.+||||++.+.     ..+++|+++++ +.||.|||+|.|.+ +   .....|.++|||
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            578999999999999888 7889999999985     34788999887 99999999999987 3   245789999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeEEec
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL  110 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L  110 (115)
                      ++..+++++||++.+++.++...+....||+|
T Consensus        90 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          90 HDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            99888899999999999999877767788887

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.91  E-value=4.8e-23  Score=121.02  Aligned_cols=100  Identities=22%  Similarity=0.407  Sum_probs=88.8

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEEC--CeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYG--SSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      |.|+|++|++|+.  ..+.+||||++.+.  ...++|+++.+ +.||.|+|.|.|.+......|.|+|||++..+++++|
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence            5799999999987  67889999999997  35789999887 8999999999999976667899999999988889999


Q ss_pred             EEEEEEcchhhccCeeeeEEecccC
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      |++.+++.++........||+|.++
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~  102 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGR  102 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCC
Confidence            9999999999887777788899765

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.91  E-value=4.9e-23  Score=123.14  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=91.1

Q ss_pred             cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEE-eC
Q 048139            7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVW-NS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~-~~   79 (115)
                      ..+.|.|+|++|++|+..+ ..+.+|||+++++..     .+++|+++++ +.||.|||+|.|.+......|.++|| ++
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V~~d~  105 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVIVWGDY  105 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence            4578999999999998754 567899999999842     3789999876 99999999999999767789999999 57


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +...++++||++.++|+.+...+....||+|.+..
T Consensus       106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            77778999999999999986666677899998753

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.91  E-value=6.4e-23  Score=117.00  Aligned_cols=99  Identities=24%  Similarity=0.337  Sum_probs=87.4

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCceeE
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIG   89 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG   89 (115)
                      |.|+|++|++|+..+..+.+||||++.+++..++|+++.+ +.+|.|||.|.|.+.. ....|.|+|||++.   +++||
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            7899999999998887888999999999999999999876 9999999999999964 45789999999874   78999


Q ss_pred             EEEEEcchhhccC--eeeeEEecccC
Q 048139           90 SGRIQLHKALSQG--FDDAAWPLQTK  113 (115)
Q Consensus        90 ~~~v~l~~l~~~~--~~~~~~~L~~~  113 (115)
                      ++.+++.++...+  ...+||+|.++
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCCC
Confidence            9999999998754  46788898754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.91  E-value=9.9e-23  Score=119.36  Aligned_cols=105  Identities=23%  Similarity=0.473  Sum_probs=93.2

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC----CceEEEEEEeCCCCCC
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG----LRELNVVVWNSHTLTP   84 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~L~~~v~~~~~~~~   84 (115)
                      |.|+|+|++|++|+..+..+.+|||+++.+....++|++..+++.+|.|||.|.|.+...    ...|.|+|||.+..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            579999999999998888889999999999988889988764489999999999999654    5789999999988888


Q ss_pred             CceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           85 DEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        85 ~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +++||++.+++.++..++....|+.|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999998888888888764

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=9.1e-23  Score=122.89  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=90.4

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      .|.|+|++|++|+..+..|.+||||++.++...++|++..+++.||.|||.|.|.+.. ....|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            3889999999999999889999999999999999999986546999999999999853 456899999999887789999


Q ss_pred             EEEEEEcchhhcc----CeeeeEEecccCC
Q 048139           89 GSGRIQLHKALSQ----GFDDAAWPLQTKT  114 (115)
Q Consensus        89 G~~~v~l~~l~~~----~~~~~~~~L~~~~  114 (115)
                      |++.++++++...    ....+||+|.+..
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~  110 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPG  110 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence            9999999998653    2356788998653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.90  E-value=1.4e-22  Score=117.84  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=84.0

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      +.|.|+|++|++|+..+   ..+||+.+.+++.+.+|++.++  .||.|||.|.|.+......|.|+|||++.. .|+++
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l   75 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV   75 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence            57999999999997654   4589999999999999998764  499999999999976666799999999854 89999


Q ss_pred             EEEEEEcchhhccCee--eeEEeccc
Q 048139           89 GSGRIQLHKALSQGFD--DAAWPLQT  112 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~--~~~~~L~~  112 (115)
                      |++.++|.++..+...  .+||+|.+
T Consensus        76 G~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          76 GTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEEEhHHcccCCCCCCCccEecCh
Confidence            9999999999876554  67888864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.90  E-value=2.4e-22  Score=117.55  Aligned_cols=102  Identities=21%  Similarity=0.363  Sum_probs=90.8

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      .|+|+|++|++|+..+..+.+||||.+.+++..++|+++.+ +.||.|+|+|.|.+.. ....|.|+|||++..+++++|
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            38999999999998887888999999999988999999887 9999999999999854 356899999999988889999


Q ss_pred             EEEEEEcchhhccCeeeeEEeccc
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      |++.+++.++...+....|+.|.+
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          80 GKVVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEEEHHHcccCCCCCCEEECCC
Confidence            999999999987666778888875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.90  E-value=1.9e-22  Score=118.59  Aligned_cols=104  Identities=22%  Similarity=0.455  Sum_probs=91.3

Q ss_pred             ceEEEEEeeecCCCCCCC--CCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCC
Q 048139            9 LPLEITVVGCYNLDDKEW--ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPD   85 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~   85 (115)
                      |.|.|+|++|++|+..+.  .+.+||||.+.++...++|+++.+ +.+|.|+|.|.|.+.. ....|.|+|||++..+++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            679999999999998877  788999999999999999999887 9999999999999964 567999999999988889


Q ss_pred             ceeEEEEEEcchhhc---cCeeeeEEecccC
Q 048139           86 EFIGSGRIQLHKALS---QGFDDAAWPLQTK  113 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~---~~~~~~~~~L~~~  113 (115)
                      ++||++.+++.++..   .+....|+.|.++
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~  110 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKST  110 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCc
Confidence            999999999999973   3445678888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=1.1e-22  Score=119.66  Aligned_cols=103  Identities=26%  Similarity=0.357  Sum_probs=88.7

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC----CceEEEEEEeCCCCC-C
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG----LRELNVVVWNSHTLT-P   84 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~----~~~L~~~v~~~~~~~-~   84 (115)
                      +|.|+|++|++|+..+..+.+||||++.+...+++|+++.+ +.||.|||.|.|.+...    ...|.|+|||.+..+ +
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            58999999999998888888999999999999999999886 99999999999998532    357999999988776 7


Q ss_pred             CceeEEEEEEcchhhc-cCeeeeEEecccC
Q 048139           85 DEFIGSGRIQLHKALS-QGFDDAAWPLQTK  113 (115)
Q Consensus        85 ~~~lG~~~v~l~~l~~-~~~~~~~~~L~~~  113 (115)
                      +++||++.+++.++.. +....+||+|..+
T Consensus        80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~  109 (127)
T cd04022          80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKR  109 (127)
T ss_pred             CCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence            8999999999999974 4455678888754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.90  E-value=1.2e-22  Score=116.76  Aligned_cols=101  Identities=23%  Similarity=0.366  Sum_probs=88.3

Q ss_pred             EEEEEeeecCCCCCCC-CCCCCcEEEEEECCeEEEEEEecCCCCCCee-ceeEEEeecCC---CceEEEEEEeCCCCCCC
Q 048139           11 LEITVVGCYNLDDKEW-ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTF-QEKFVLPLIEG---LRELNVVVWNSHTLTPD   85 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w-~e~~~~~~~~~---~~~L~~~v~~~~~~~~~   85 (115)
                      |.|+|++|++|+..+. .+.+|||+++.++...++|+++.+ +.+|.| +|.|.|.+...   ...|.|+|||++..+++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~   79 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN   79 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence            5799999999988763 677899999999999999999887 999999 99999998542   36899999999988889


Q ss_pred             ceeEEEEEEcchhhcc---CeeeeEEeccc
Q 048139           86 EFIGSGRIQLHKALSQ---GFDDAAWPLQT  112 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~~---~~~~~~~~L~~  112 (115)
                      ++||++.+++.++...   .....||+|.+
T Consensus        80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            9999999999999883   45678998865

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.90  E-value=8.2e-23  Score=122.65  Aligned_cols=102  Identities=29%  Similarity=0.388  Sum_probs=87.0

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeec------------C----C
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLI------------E----G   68 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~------------~----~   68 (115)
                      +|.|+|++|++|+.  ..|.+||||++.+..     .+++|+++.+ +.||.|||.|.|.+.            +    .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence            48999999999987  467899999999965     5788999887 999999999999983            1    1


Q ss_pred             CceEEEEEEeCCCCCCCceeEEEEEEcchhhcc-CeeeeEEecccCC
Q 048139           69 LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ-GFDDAAWPLQTKT  114 (115)
Q Consensus        69 ~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~-~~~~~~~~L~~~~  114 (115)
                      ...|.|+||+++..++++|||++.+++..+... +....||+|.++.
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            257899999999888899999999999999876 5677899997764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.90  E-value=2.1e-22  Score=117.93  Aligned_cols=105  Identities=23%  Similarity=0.316  Sum_probs=91.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.   ...++|+++++ +.+|.|+|.|.|.+..   ....|.++|||++
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            357899999999999988888889999999984   34788999887 9999999999999853   2468999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      ..+++++||++.+++.++..++....|+.|++
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~  124 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQS  124 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence            88889999999999999987777888989864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.90  E-value=3.2e-22  Score=117.33  Aligned_cols=104  Identities=24%  Similarity=0.373  Sum_probs=89.2

Q ss_pred             cCceEEEEEeeecCCCCCCC-CCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEW-ISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|.|++|++|+..+. .+.+|||+++.+.     ..+++|+++++ +.||.|||+|.|.+..   ....|.|+||
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            46789999999999987654 4779999999884     23678998876 9999999999999853   3467999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      |++..+++++||++.+++..+...+....|++|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            9998889999999999999998887788898884

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.90  E-value=3.3e-22  Score=114.49  Aligned_cols=93  Identities=15%  Similarity=0.333  Sum_probs=81.1

Q ss_pred             ceEEEEEeeecCCCCCCCC----CCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeCCCC
Q 048139            9 LPLEITVVGCYNLDDKEWI----SRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNSHTL   82 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~----~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~~~~   82 (115)
                      |.|.|+|++|++|+..+..    +.+|||+++.++...++|+++.+ +.||.|||.|.|.+.+  ....|.|+|||++..
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            6899999999999986543    24799999999988999999987 9999999999999843  335799999999988


Q ss_pred             CCCceeEEEEEEcchhhccC
Q 048139           83 TPDEFIGSGRIQLHKALSQG  102 (115)
Q Consensus        83 ~~~~~lG~~~v~l~~l~~~~  102 (115)
                      +++++||++.++|+++..+.
T Consensus        80 ~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          80 SFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCCcceEEEEEEHHHHHhhC
Confidence            99999999999999997743

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.90  E-value=1.4e-22  Score=118.86  Aligned_cols=106  Identities=26%  Similarity=0.402  Sum_probs=91.6

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCC-----CceEEEEEEeCCCCC
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEG-----LRELNVVVWNSHTLT   83 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~L~~~v~~~~~~~   83 (115)
                      +|+|+|++|++|+..+..+.+||||.+.+.. .+++|+++.+++.+|.|||.|.|.+...     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            5899999999999888888999999999987 7889998765589999999999999554     578999999998878


Q ss_pred             CCceeEEEEEEcchhhccCee-----eeEEecccCCC
Q 048139           84 PDEFIGSGRIQLHKALSQGFD-----DAAWPLQTKTG  115 (115)
Q Consensus        84 ~~~~lG~~~v~l~~l~~~~~~-----~~~~~L~~~~~  115 (115)
                      .+++||++.+++.++..+...     ..||.|..+.|
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g  117 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG  117 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence            899999999999999886553     56888876554

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.90  E-value=1.9e-22  Score=116.11  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=81.1

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ...+.|+|+|++|++|+   ..+.+|||+++.+..    .+++|++.++ +.||.|||+|.|.++.   ....|.++|||
T Consensus        11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d   86 (118)
T cd08677          11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRC   86 (118)
T ss_pred             CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence            35689999999999998   346689999999853    4778998886 9999999999999853   35679999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeE
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAA  107 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~  107 (115)
                      ++.++++++||++.+++.++.......+|
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W  115 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSMMLGAAQW  115 (118)
T ss_pred             CCCCCCCceEEEEEEccccccCCccccch
Confidence            99999999999999999987443333333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.90  E-value=1.7e-22  Score=118.52  Aligned_cols=104  Identities=26%  Similarity=0.370  Sum_probs=88.7

Q ss_pred             cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+.. +.+|||+++.+.     ..+++|+++++ +.||.|||+|.|.+..   ....|.++||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            346899999999999988865 789999999984     23578999887 9999999999999843   3468999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      |++..+++++||++.++|.++...+....||+|+
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9998889999999999999997666667788874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.90  E-value=6e-22  Score=115.57  Aligned_cols=102  Identities=25%  Similarity=0.328  Sum_probs=89.0

Q ss_pred             EEEEEeeecCCCCCC-CCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139           11 LEITVVGCYNLDDKE-WISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        11 l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      |.|+|.+|++|+... ..+.+||||.+.+... .++|+++.+ +.||.|||+|.|.+......|.|.|||++..+++++|
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i   80 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI   80 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence            789999999998753 4567899999999754 689999887 9999999999999976668999999999988899999


Q ss_pred             EEEEEEcchhhccCeeeeEEecccC
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      |++.++++++...+....||+|.+.
T Consensus        81 G~~~i~l~~l~~~~~~~~w~~L~~~  105 (121)
T cd08401          81 GKVAIKKEDLHKYYGKDTWFPLQPV  105 (121)
T ss_pred             EEEEEEHHHccCCCCcEeeEEEEcc
Confidence            9999999999877777888898763

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.89  E-value=5e-22  Score=115.75  Aligned_cols=103  Identities=20%  Similarity=0.305  Sum_probs=90.0

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      |.|.|+|++|++|++.+..+.+|||+++.+.+ ..++|+++.+ +.+|.|+|.|.|.+......|.|+|||++..+++++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence            57999999999999988888999999999975 5688888776 999999999999986666799999999998888999


Q ss_pred             eEEEEEEcchhhccCeeeeEEecccC
Q 048139           88 IGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        88 lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ||++.+++.++... ....||.|.+.
T Consensus        80 IG~~~~~l~~l~~~-~~~~~~~~~~~  104 (120)
T cd04045          80 LGSVEINVSDLIKK-NEDGKYVEYDD  104 (120)
T ss_pred             eeEEEEeHHHhhCC-CCCceEEecCC
Confidence            99999999999876 55778866554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.89  E-value=6.4e-22  Score=115.32  Aligned_cols=102  Identities=26%  Similarity=0.440  Sum_probs=90.0

Q ss_pred             ceEEEEEeeecCCCCCCC------CCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCC
Q 048139            9 LPLEITVVGCYNLDDKEW------ISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHT   81 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~------~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~   81 (115)
                      |.|+|+|++|++|+..+.      .+.+||||++.++...++|+++.+ +.+|.|+|.|.|.+.. ....|.++|||++.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            579999999999987654      357899999999999999999887 9999999999999853 56789999999987


Q ss_pred             CCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           82 LTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        82 ~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      . ++++||++.+++.++..++....|++|.+
T Consensus        80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  109 (121)
T cd08391          80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLED  109 (121)
T ss_pred             C-CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence            7 88999999999999988887788999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.89  E-value=7.9e-22  Score=117.15  Aligned_cols=93  Identities=23%  Similarity=0.377  Sum_probs=84.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPD   85 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~   85 (115)
                      ..|.|.|+|++|++|+..+..+.+||||++.++...++|+++.+ +.||.|||.|.|.+.. ....|.|+|||++..+++
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCC-CCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            34799999999999998888899999999999999999999887 9999999999999854 456899999999988889


Q ss_pred             ceeEEEEEEcchhhc
Q 048139           86 EFIGSGRIQLHKALS  100 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~  100 (115)
                      ++||++.+++.++..
T Consensus        92 ~~lG~~~i~l~~l~~  106 (136)
T cd08375          92 DFLGRTEIRVADILK  106 (136)
T ss_pred             CeeEEEEEEHHHhcc
Confidence            999999999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.89  E-value=1.1e-21  Score=114.12  Aligned_cols=102  Identities=23%  Similarity=0.348  Sum_probs=89.5

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      |.|+|+|++|++|+..+..+.+|||+.+.+....++|+++.+ +.||.|+|+|.|.+......|.|+|||++..+++++|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL   79 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecC-CcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence            579999999999998888888999999999988899999887 9999999999999866567899999999887889999


Q ss_pred             EEEEEEcchhhccCeeeeEEecccC
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      |++.+++.++..+  ...|+.|.++
T Consensus        80 G~~~~~l~~~~~~--~~~~~~l~~~  102 (119)
T cd08377          80 GKVAIPLLSIKNG--ERKWYALKDK  102 (119)
T ss_pred             eEEEEEHHHCCCC--CceEEECccc
Confidence            9999999998654  2467787654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.89  E-value=1.1e-21  Score=114.53  Aligned_cols=102  Identities=25%  Similarity=0.306  Sum_probs=88.8

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeE
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIG   89 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG   89 (115)
                      |.|+|++|++|+..+..+.+||||++.+.+. ..+|+++.+ +.||.|||.|.|.+......|.|+|||++..++++++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG   80 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG   80 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence            7899999999999998899999999999765 469999887 99999999999999766679999999999888999999


Q ss_pred             EEEEEcchhhccCe-eeeEEecccC
Q 048139           90 SGRIQLHKALSQGF-DDAAWPLQTK  113 (115)
Q Consensus        90 ~~~v~l~~l~~~~~-~~~~~~L~~~  113 (115)
                      ++.+++.++...+. ...|++|.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~W~~L~~~  105 (121)
T cd04054          81 KVSLTREVISAHPRGIDGWMNLTEV  105 (121)
T ss_pred             EEEEcHHHhccCCCCCCcEEECeee
Confidence            99999998876433 5667788653

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.89  E-value=1.3e-21  Score=118.92  Aligned_cols=107  Identities=19%  Similarity=0.302  Sum_probs=90.5

Q ss_pred             ccCceEEEEEeeecCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEEEEecCCCCC
Q 048139            6 IQGLPLEITVVGCYNLDDKE------------------------------WISRQDPYVCLEYGSSK-YRTKTCTDGGKN   54 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~------------------------------~~~~~~p~~~~~~~~~~-~~t~~~~~~~~~   54 (115)
                      +..|+|.|+|.+|++|++.+                              ..+.+||||.+.+++.. .+|+++.+ +.|
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~n   82 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SEN   82 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCC
Confidence            45789999999999999865                              24557999999998654 69999887 899


Q ss_pred             CeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           55 PTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        55 P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      |.|||+|.|.+......|.|+|||++..+ +++||++.+++.++..++....|++|.+.+
T Consensus        83 P~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~  141 (158)
T cd04015          83 PVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN  141 (158)
T ss_pred             CccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC
Confidence            99999999998655678999999998764 579999999999998877778899987643

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.89  E-value=7.6e-22  Score=115.59  Aligned_cols=105  Identities=22%  Similarity=0.317  Sum_probs=90.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.   ...++|+++++ +.||.|||.|.|.+..   ....|.|+|||++
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            567899999999999988888889999999884   34678998876 9999999999999853   2468999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      ..+++++||++.+++.++..+....+|+.|.+
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~~  124 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES  124 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEccC
Confidence            88889999999999999877666778888753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.89  E-value=6.5e-22  Score=115.15  Aligned_cols=101  Identities=23%  Similarity=0.299  Sum_probs=88.4

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCc
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~   86 (115)
                      |.|+|++|++|+..+..+.+||||++.+.   ...++|+++.+ +.||.|||+|.|.+.. ....|.|+|||++.. +++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            78999999999988878889999999985   35789999887 9999999999999854 345799999999977 889


Q ss_pred             eeEEEEEEcchhhccCeeeeEEecccC
Q 048139           87 FIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +||++.+++.++..+.....|++|.++
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~  106 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ  106 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence            999999999999887778888998764

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.89  E-value=3.9e-22  Score=116.05  Aligned_cols=102  Identities=23%  Similarity=0.323  Sum_probs=86.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+..     .+++|+++++ +.+|.|||+|.|.+..  ....|.++||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~   87 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLLVTVWNK   87 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence            5689999999999998887 77899999999852     3678998876 9999999999999843  235688999998


Q ss_pred             CCCC-CCceeEEEEEEcchhhccCeeeeEEec
Q 048139           80 HTLT-PDEFIGSGRIQLHKALSQGFDDAAWPL  110 (115)
Q Consensus        80 ~~~~-~~~~lG~~~v~l~~l~~~~~~~~~~~L  110 (115)
                      +... ++++||.+.+++.++..++...+||.|
T Consensus        88 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          88 LSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            8765 478999999999999876667888876

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.89  E-value=7.7e-22  Score=116.81  Aligned_cols=103  Identities=23%  Similarity=0.372  Sum_probs=88.7

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-------EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-------KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL   82 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-------~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~   82 (115)
                      .|+|+|++|++|+..+..+.+|||+++.+...       .++|+++.+ +.+|.|||+|.|.+......|.++|||++..
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEEEECCCC
Confidence            48999999999999888889999999998643       578988876 9999999999999976567899999999988


Q ss_pred             CCCceeEEEEEEcchhhccCe------eeeEEecccC
Q 048139           83 TPDEFIGSGRIQLHKALSQGF------DDAAWPLQTK  113 (115)
Q Consensus        83 ~~~~~lG~~~v~l~~l~~~~~------~~~~~~L~~~  113 (115)
                      +++++||++.+++.++.....      ...||+|.++
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~  116 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR  116 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence            889999999999999987543      3478888754

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.88  E-value=8.9e-22  Score=115.81  Aligned_cols=103  Identities=30%  Similarity=0.347  Sum_probs=86.7

Q ss_pred             cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+.. +.+||||++.+.     ..+++|+++++ +.||.|||+|.|.+..   ....|.+.||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            357899999999999988764 889999999985     23778999876 9999999999999854   3578999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccC---eeeeEEec
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQG---FDDAAWPL  110 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~---~~~~~~~L  110 (115)
                      +.+..+++++||++.++|.++....   ....||+|
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            9998889999999999999985532   44578887

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.88  E-value=1.3e-21  Score=114.94  Aligned_cols=104  Identities=30%  Similarity=0.328  Sum_probs=89.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.     ...++|+++++ +.||.|||+|.|.+..   ....|.+.||+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            357899999999999998888889999999985     45789999887 9999999999999843   24689999999


Q ss_pred             CCCC--CCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           79 SHTL--TPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        79 ~~~~--~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      .+..  +++++||++.+++.++..++....||+|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            8864  67899999999999998777778898874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.88  E-value=2.7e-21  Score=113.18  Aligned_cols=102  Identities=17%  Similarity=0.288  Sum_probs=86.9

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEEC-CeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCC--Cc
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG-SSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTP--DE   86 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~--~~   86 (115)
                      .|+|+|++|++|+..+..+.+||||++.+. ...++|+++.+ +.||.|||.|.|.+.. ...|.++|||++..++  ++
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCc
Confidence            489999999999998888899999999996 67889999886 9999999999999965 5789999999987765  57


Q ss_pred             eeEEEEEEcchhhccCe-eeeEEecccC
Q 048139           87 FIGSGRIQLHKALSQGF-DDAAWPLQTK  113 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~-~~~~~~L~~~  113 (115)
                      +||++.+++.++..... ...|++|...
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~  106 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKL  106 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecC
Confidence            99999999999976543 3567777443

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.88  E-value=2e-21  Score=111.86  Aligned_cols=91  Identities=22%  Similarity=0.426  Sum_probs=80.4

Q ss_pred             ceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEeCC
Q 048139            9 LPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWNSH   80 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~~~   80 (115)
                      |.|+|+|++|++|+..+.. +.+||||++.+.   ...++|+++++ +.||.|+|.|.|.+..    ....|.++|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            6899999999999988877 889999999884   34689999887 9999999999998743    3468999999999


Q ss_pred             CCCCCceeEEEEEEcchhhc
Q 048139           81 TLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~  100 (115)
                      ..+++++||++.+++.++..
T Consensus        80 ~~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          80 RFTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             CCCCCCcceEEEEEHHHHhc
Confidence            88889999999999999985

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=2e-21  Score=113.89  Aligned_cols=103  Identities=30%  Similarity=0.389  Sum_probs=86.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+..     .+++|+++++ +.+|.|+|+|.|.+..    ....|.|+||
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            4578999999999999888888899999999853     5778998887 9999999999998632    3568999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      |++..+++++||++.+++.+... .....||+|.
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence            99988889999999999998433 3346788873

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.88  E-value=1.4e-21  Score=113.97  Aligned_cols=98  Identities=24%  Similarity=0.371  Sum_probs=84.8

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCceeE
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIG   89 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG   89 (115)
                      |.|+|++|++|+..    .+||||++.+.....+|+++++ +.||.|||+|.|.+.. ....|.++|||++.. ++++||
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG   75 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG   75 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence            78999999999876    6799999999988999999887 9999999999999854 567899999999866 788999


Q ss_pred             EEEEEcchhhccC-----eeeeEEecccCC
Q 048139           90 SGRIQLHKALSQG-----FDDAAWPLQTKT  114 (115)
Q Consensus        90 ~~~v~l~~l~~~~-----~~~~~~~L~~~~  114 (115)
                      ++.++++++...+     ....||+|.++.
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~  105 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKK  105 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence            9999999987643     245788998765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.88  E-value=3.9e-21  Score=112.69  Aligned_cols=105  Identities=21%  Similarity=0.256  Sum_probs=89.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.   ....+|+++.+ +.+|.|||+|.|...+    ....|.++|||+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            457899999999999988888889999999883   45789999887 9999999999997522    345799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      +..+++++||++.+++.++...+....|+.|.+
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            988889999999999999987767778888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.88  E-value=3.7e-21  Score=115.78  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             eEEEEEeeecCCCCCCCCC--------------CCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee--cCCCceEE
Q 048139           10 PLEITVVGCYNLDDKEWIS--------------RQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL--IEGLRELN   73 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~--------------~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~--~~~~~~L~   73 (115)
                      .|.|+|++|++|+..+..+              .+||||++.+.+.+.+|+++++ +.||.|||+|.|.+  ......|.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcC-CCCCCcceEEEEEeeCCCcCCEEE
Confidence            4789999999999876443              5899999999999999999887 99999999999996  23456899


Q ss_pred             EEEEeCCCCCCCceeEEEEEEcchhhccCe-------eeeEEecccC
Q 048139           74 VVVWNSHTLTPDEFIGSGRIQLHKALSQGF-------DDAAWPLQTK  113 (115)
Q Consensus        74 ~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~-------~~~~~~L~~~  113 (115)
                      |+|||++..++|+++|++.+++.++...+.       ...|+.|.+.
T Consensus        80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~  126 (151)
T cd04018          80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS  126 (151)
T ss_pred             EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence            999999988899999999999999977653       2355566543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.88  E-value=3e-21  Score=112.80  Aligned_cols=103  Identities=25%  Similarity=0.395  Sum_probs=88.2

Q ss_pred             cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+ ..+.+||||++.+.     ..+++|+++++ +.+|.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            4678999999999999877 67789999999874     14678888776 9999999999999854   2468999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEec
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL  110 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L  110 (115)
                      |++..+++++||++.+++.++...+....||+|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999888899999999999999776667788876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.87  E-value=2.3e-21  Score=113.37  Aligned_cols=103  Identities=25%  Similarity=0.287  Sum_probs=86.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC------CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|+||+..+..+.+|||+++.+.      ..+++|++.++ +.||.|||+|.|.+..   ....|.++||
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            457899999999999988777889999999974      23788998876 9999999999999854   4678999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccC-eeeeEEec
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQG-FDDAAWPL  110 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~-~~~~~~~L  110 (115)
                      +++..+++++||.+.++|.++...+ ....||.|
T Consensus        91 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          91 SVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             eCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9998889999999999999995543 34557665

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.87  E-value=7.6e-21  Score=111.92  Aligned_cols=105  Identities=22%  Similarity=0.269  Sum_probs=86.3

Q ss_pred             cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+.. +.+||||++.+.   ..+.+|+++++ +.||.|||+|.|. +..   ....|.++||+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d   92 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLS   92 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence            457899999999999987765 789999999885   44678999887 9999999999994 432   33579999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhcc--CeeeeEEeccc
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQ--GFDDAAWPLQT  112 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~--~~~~~~~~L~~  112 (115)
                      ++..+++++||++.++|.++.-.  +....|.+|++
T Consensus        93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99888999999999999998554  55566767753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.87  E-value=5.3e-21  Score=114.52  Aligned_cols=91  Identities=26%  Similarity=0.486  Sum_probs=83.5

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      |.|.|+|++|++|+..+. +.+|||+++.++...++|+++.+ +.||.|+|+|.|.+......+.|+|||++..++|++|
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~i   79 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSM   79 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcC-CCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEE
Confidence            689999999999987776 78999999999999999999887 9999999999999976678899999999988899999


Q ss_pred             EEEEEEcchhhcc
Q 048139           89 GSGRIQLHKALSQ  101 (115)
Q Consensus        89 G~~~v~l~~l~~~  101 (115)
                      |++.+++.++...
T Consensus        80 G~a~i~l~~l~~~   92 (145)
T cd04038          80 GEAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEEHHHhhhh
Confidence            9999999998764

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.87  E-value=3.1e-21  Score=114.78  Aligned_cols=102  Identities=29%  Similarity=0.469  Sum_probs=89.7

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEEC----CeEEEEEEecCCCCCCeeceeEEEeecC----------------CCc
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYG----SSKYRTKTCTDGGKNPTFQEKFVLPLIE----------------GLR   70 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~~----------------~~~   70 (115)
                      |+|+|++|++|+.. ..+.+|||+++.+.    ...++|+++.+ +.+|.|+|.|.|.+..                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence            57999999999888 77889999999998    67899999887 9999999999999843                245


Q ss_pred             eEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        71 ~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      .|.|+|||++..+++++||++.+++.++...+....||.|.++.
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            89999999998888999999999999998777788899998764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.87  E-value=6.5e-21  Score=111.48  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=85.5

Q ss_pred             ceEEEEEeeecCCCCCCC-CCCCCcEEEEEECC--eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCC
Q 048139            9 LPLEITVVGCYNLDDKEW-ISRQDPYVCLEYGS--SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPD   85 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~   85 (115)
                      |.|+|+|++|++|+.... .+.+||||.+.+..  ..++|+++.+ +.+|.|||.|.|.+......|.|+|||++..+++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            679999999999986553 45689999999987  7899999887 9999999999999876678999999999988889


Q ss_pred             ceeEEEEEEcchhhccCeeeeEE
Q 048139           86 EFIGSGRIQLHKALSQGFDDAAW  108 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~~~~~~~~~  108 (115)
                      ++||++.+++.++..++....++
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~  103 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQENLT  103 (124)
T ss_pred             ceeEEEEEEHHHhccCccccCcc
Confidence            99999999999998876654433

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.87  E-value=8.1e-21  Score=111.03  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=89.4

Q ss_pred             cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+..+ ..+.+|||+++.+.   ....+|+++.+ +.+|.|+|.|.|.+..   ....|.|+|||+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            4578999999999999887 57789999999873   34678888877 9999999999999843   235799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      +..+++++||++.+++.++........|++|.
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            98888999999999999998888778888885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=1.2e-20  Score=111.02  Aligned_cols=102  Identities=31%  Similarity=0.483  Sum_probs=87.0

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC-------
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL-------   82 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~-------   82 (115)
                      .|+|+|++|++|+..+..+.+|||+.+.++...++|+++.+ +.+|.|+|.|.|.+......|.|+|||++..       
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~   80 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ   80 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecC-CCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence            58999999999998888888999999999888899999877 9999999999999855557899999998742       


Q ss_pred             ----CCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           83 ----TPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        83 ----~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                          +.+++||++.+++.++.  +....|+.|.++.
T Consensus        81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~  114 (127)
T cd04027          81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRT  114 (127)
T ss_pred             eccccCCCcceEEEEEhHHcc--CCCCeEEECccCC
Confidence                46889999999999874  3456788887653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.87  E-value=1.3e-20  Score=110.64  Aligned_cols=100  Identities=21%  Similarity=0.336  Sum_probs=86.3

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      ...|+|+|++|++|...+..+.+||||.+.+++..++|+++.+ +.+|.|+|.|.|.+......|.|+|||++.. .+++
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~   79 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF   79 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCC-CCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence            4679999999999998888889999999999999999999886 9999999999998866677899999999866 5899


Q ss_pred             eEEEEEEcchhhccCeeeeEEecc
Q 048139           88 IGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        88 lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      ||.+.+++.++.  +....+|+|.
T Consensus        80 lG~~~~~l~~~~--~~~~~~~~l~  101 (126)
T cd04046          80 LGQATLSADPND--SQTLRTLPLR  101 (126)
T ss_pred             eEEEEEecccCC--CcCceEEEcc
Confidence            999999998754  3344667774

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.86  E-value=1.4e-20  Score=108.29  Aligned_cols=100  Identities=23%  Similarity=0.319  Sum_probs=84.8

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-C----CceEEEEEEeCCCC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-G----LRELNVVVWNSHTL   82 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~----~~~L~~~v~~~~~~   82 (115)
                      ...|+|+|++|++|+    .+.+|||+++.+++.+++|+++.+ +.+|.|+|+|.|.+.. .    ...|.|+|||++..
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            346899999999998    467899999999999999999876 8999999999999732 1    35799999999988


Q ss_pred             CCCceeEEEEEEcchhhcc---CeeeeEEeccc
Q 048139           83 TPDEFIGSGRIQLHKALSQ---GFDDAAWPLQT  112 (115)
Q Consensus        83 ~~~~~lG~~~v~l~~l~~~---~~~~~~~~L~~  112 (115)
                      +++++||++.++++.+..+   +....|++|.+
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            8899999999999999765   33456888865

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.86  E-value=1.7e-20  Score=110.26  Aligned_cols=97  Identities=25%  Similarity=0.375  Sum_probs=85.8

Q ss_pred             EeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCCCCceeEEE
Q 048139           15 VVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLTPDEFIGSG   91 (115)
Q Consensus        15 i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~~~~~lG~~   91 (115)
                      |++|++|+.  ..+.+|||+++.+....++|+++++ +.+|.|+|+|.|.+..   ....|.++|||++..+++++||++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~   78 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA   78 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence            678999987  6778999999999988999999887 8999999999999843   467899999999988889999999


Q ss_pred             EEEcchhhccCeeeeEEecccCC
Q 048139           92 RIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        92 ~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      .+++.++..++....|++|.++.
T Consensus        79 ~~~l~~l~~~~~~~~~~~L~~~~  101 (127)
T cd08373          79 TVSLQDLVSEGLLEVTEPLLDSN  101 (127)
T ss_pred             EEEhhHcccCCceEEEEeCcCCC
Confidence            99999999888888889987554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.86  E-value=3.9e-20  Score=109.45  Aligned_cols=103  Identities=22%  Similarity=0.426  Sum_probs=87.1

Q ss_pred             CceEEEEEeeecCCCCCCCC----------CCCCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCceEEEEE
Q 048139            8 GLPLEITVVGCYNLDDKEWI----------SRQDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVV   76 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~----------~~~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v   76 (115)
                      .|.|+|+|++|++|+..+..          +..||||++.+++.. .+|+++.+ +.+|.|||+|.|.+. ....|.|+|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~-~~~~l~~~v   80 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH-NGRNLELTV   80 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcC-CCCEEEEEE
Confidence            47799999999999877652          568999999998754 68888776 999999999999996 447899999


Q ss_pred             EeCCCCCCCceeEEEEEEcchhhc--cCeeeeEEeccc
Q 048139           77 WNSHTLTPDEFIGSGRIQLHKALS--QGFDDAAWPLQT  112 (115)
Q Consensus        77 ~~~~~~~~~~~lG~~~v~l~~l~~--~~~~~~~~~L~~  112 (115)
                      |+++..++++++|++.++|.++..  .+....|++|.+
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~  118 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP  118 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC
Confidence            999888889999999999999987  455677778863

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.86  E-value=1.9e-20  Score=109.70  Aligned_cols=104  Identities=19%  Similarity=0.256  Sum_probs=87.4

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+..+..+..+||+++.+.   ..+++|++.+  +.||.|||+|.|. +..   ....|.++||++
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~--~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR--GPNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc--CCCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            346899999999999988877888999997763   3577888764  3899999999998 543   457899999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      +..+++++||++.++|+++...+....|++|.+
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            988899999999999999977777778888864

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.86  E-value=1.1e-20  Score=115.24  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=88.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeec-C---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLI-E---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~-~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.     ...++|+++.+ +.||.|||.|.|.+. .   ....|.|+||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            458899999999999988888889999999873     35789999887 999999999999852 2   2357999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      |++..+++++||++.+++.++...+....|+.|.
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            9998888999999999999987766666666664

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.86  E-value=2.3e-20  Score=110.24  Aligned_cols=107  Identities=26%  Similarity=0.354  Sum_probs=91.3

Q ss_pred             cccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC--CceEEEEEE
Q 048139            5 GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--LRELNVVVW   77 (115)
Q Consensus         5 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~L~~~v~   77 (115)
                      +...+.|.|+|++|++|+..+..+.+|||+.+.+.     ...++|+++.+ +.+|.|+|+|.|.+...  ...|.++||
T Consensus         9 ~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~   87 (131)
T cd04026           9 SVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVW   87 (131)
T ss_pred             EECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEE
Confidence            45668999999999999987777889999999985     35789999887 99999999999998543  467999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      |++..+++++||++.+++.++... ....||+|.+.
T Consensus        88 d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~  122 (131)
T cd04026          88 DWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ  122 (131)
T ss_pred             ECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence            998888899999999999999765 56778888664

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.85  E-value=1.7e-20  Score=109.96  Aligned_cols=91  Identities=20%  Similarity=0.319  Sum_probs=80.1

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee-c-CCCceEEEEEEeCCCCCCC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL-I-EGLRELNVVVWNSHTLTPD   85 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~-~-~~~~~L~~~v~~~~~~~~~   85 (115)
                      .+.|+|+|++|++|+. +..+.+|||+++.+.+..++|+++++ +.+|.|||+|.|.. . .....|.|+|||++..+++
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            4799999999999974 56778999999999988999999987 99999999999974 2 3567899999999988899


Q ss_pred             ceeEEEEEEcchhhc
Q 048139           86 EFIGSGRIQLHKALS  100 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~  100 (115)
                      ++||++.+++.....
T Consensus       105 d~IG~~~i~l~~~~~  119 (127)
T cd04032         105 DLLGTCSVVPEAGVH  119 (127)
T ss_pred             CeeEEEEEEecCCce
Confidence            999999999987653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.85  E-value=4.8e-20  Score=106.60  Aligned_cols=103  Identities=24%  Similarity=0.385  Sum_probs=88.9

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      |+|+|++|++|+..+..+.+||||++.+.+ ..++|+++.+ +.+|.|+|+|.|.+.. ....+.|+|||++..+++++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence            578999999999888788899999999864 4578998876 9999999999999854 467899999999988889999


Q ss_pred             EEEEEEcchhhccCeeeeEEecccCC
Q 048139           89 GSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        89 G~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      |++.+++.++..+.....|++|.++.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~~g  105 (115)
T cd04040          80 GSAYIDLSDLEPEETTELTLPLDGQG  105 (115)
T ss_pred             EEEEEEHHHcCCCCcEEEEEECcCCC
Confidence            99999999998876677788887654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.85  E-value=1.2e-19  Score=106.59  Aligned_cols=100  Identities=24%  Similarity=0.361  Sum_probs=84.0

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCc
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~   86 (115)
                      ..|+|+|++|++|+..   +.+||||++.+++. ..+|++ .+ +.||.|||.|.|.+.+ ....+.|.|||++..++++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            4699999999999864   36799999999864 467876 44 8999999999998643 3367899999999888999


Q ss_pred             eeEEEEEEcchhhccCeeeeEEecccC
Q 048139           87 FIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +||++.+++..+..++....|+.|.+.
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~  105 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSA  105 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccC
Confidence            999999999999887777788888754

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=8.9e-21  Score=112.28  Aligned_cols=104  Identities=21%  Similarity=0.331  Sum_probs=84.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.     ...++|+++++ +.+|.|||+|.|.+..   ....|.|+|||
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            468899999999999998888889999999984     24678999886 9999999999999843   24679999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ++..+++++||++.+++..  .+.....|+.++..
T Consensus        90 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~  122 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN  122 (133)
T ss_pred             CCCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence            9988889999999999975  22233455555443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.85  E-value=1.3e-19  Score=106.33  Aligned_cols=103  Identities=22%  Similarity=0.262  Sum_probs=85.8

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECC---eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCC
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTP   84 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~   84 (115)
                      +.|+|+|++|++|+..+..+..|||+.+.+..   ..++|+++.+ +.+|.|||+|.|.+.. ....|.|+|||++..++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~   79 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK   79 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCC
Confidence            35899999999999888888899999998763   3679999876 8999999999999965 45789999999998888


Q ss_pred             CceeEEEEEEcchhhcc---CeeeeEEeccc
Q 048139           85 DEFIGSGRIQLHKALSQ---GFDDAAWPLQT  112 (115)
Q Consensus        85 ~~~lG~~~v~l~~l~~~---~~~~~~~~L~~  112 (115)
                      +++||++.+++.++...   .....|+.|.+
T Consensus        80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~  110 (126)
T cd04043          80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT  110 (126)
T ss_pred             CceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence            99999999999987543   24456778754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.84  E-value=5.4e-20  Score=107.21  Aligned_cols=99  Identities=25%  Similarity=0.452  Sum_probs=83.8

Q ss_pred             EeeecCCCCCCCCCCCCcEEEEEECCe-------EEEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeCCC----C
Q 048139           15 VVGCYNLDDKEWISRQDPYVCLEYGSS-------KYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNSHT----L   82 (115)
Q Consensus        15 i~~a~~l~~~~~~~~~~p~~~~~~~~~-------~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~~~----~   82 (115)
                      .++|++|+..+..+.+|||+++.+...       .++|+++.+ +.||.|+|.|.|.+. +....|.|+|||++.    .
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            467899998888899999999998643       489999887 999999999999863 355689999999986    7


Q ss_pred             CCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           83 TPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        83 ~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +++++||++.+++.++........++.|.+..
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~~  116 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKGGK  116 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccCCC
Confidence            88999999999999999876667788885543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.84  E-value=1.9e-19  Score=106.89  Aligned_cols=103  Identities=16%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC----------CCceEEEEEEeC
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE----------GLRELNVVVWNS   79 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~----------~~~~L~~~v~~~   79 (115)
                      .|+|.|.+|++|+..+..+.+|||+++.+....++|+++.+ +.||.|+|.|.|.+..          ....|.++|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            48899999999999888899999999999999999999887 9999999999997421          124689999999


Q ss_pred             CCCCCCceeEEEEE-Ecchhhc---cCeeeeEEecccC
Q 048139           80 HTLTPDEFIGSGRI-QLHKALS---QGFDDAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v-~l~~l~~---~~~~~~~~~L~~~  113 (115)
                      +..+++++||++.+ ++..+..   .....+|++|...
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~  118 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG  118 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC
Confidence            98888999999986 4444433   2345678788643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.84  E-value=1e-19  Score=109.69  Aligned_cols=99  Identities=25%  Similarity=0.324  Sum_probs=83.8

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEEEEecCCCCCCe
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----------------------------SKYRTKTCTDGGKNPT   56 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----------------------------~~~~t~~~~~~~~~P~   56 (115)
                      .....|.|+|++|++|+..+..|.+||||++.+..                             ..++|+++.+ +.+|.
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~  103 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNPV  103 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCCc
Confidence            45678999999999999999889999999998852                             2367888776 99999


Q ss_pred             eceeEEEeecC-CCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEec
Q 048139           57 FQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL  110 (115)
Q Consensus        57 w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L  110 (115)
                      |||+|.|.+.. ....|.|+|||++    +++||++.++++++... ....||+|
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~d~W~~L  153 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GLDSWFKL  153 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence            99999999854 4578999999987    78999999999999854 35778876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.84  E-value=8.3e-20  Score=108.18  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=81.3

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-------CeEEEEEEecCCCCCCeeceeEEEeecC-----CCceEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-------SSKYRTKTCTDGGKNPTFQEKFVLPLIE-----GLRELNV   74 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-------~~~~~t~~~~~~~~~P~w~e~~~~~~~~-----~~~~L~~   74 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.       ...++|+++++ +.+|.|||.|.|.+..     ....|.|
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence            346899999999999988888889999999985       34789999887 9999999999999843     2468999


Q ss_pred             EEEeCCCCCCCceeEEEEEEcchhhc
Q 048139           75 VVWNSHTLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        75 ~v~~~~~~~~~~~lG~~~v~l~~l~~  100 (115)
                      +|||++..+++++||++.+++.++..
T Consensus        93 ~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 TVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            99999988889999999999999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.83  E-value=2.8e-20  Score=110.11  Aligned_cols=105  Identities=19%  Similarity=0.188  Sum_probs=86.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+..     ..++|+++.+ +.+|.|+|+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            3578999999999999888788899999998853     2668888876 89999999999998543   4789999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      .+..+++++||++.+++.+  .+.....|+.|.+.+
T Consensus        91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            9887889999999999999  444456677776654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.83  E-value=4.6e-20  Score=109.62  Aligned_cols=103  Identities=22%  Similarity=0.208  Sum_probs=82.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+..     .+++|+++++ +.||.|+|+|.|.+..   ....|.|+|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            3578999999999999888888999999998842     2567888776 9999999999999843   34578999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      ++..+++++||++.+++..  .......|+.|..
T Consensus        92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            9988899999999999988  2222344445543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.83  E-value=4.8e-19  Score=103.74  Aligned_cols=90  Identities=28%  Similarity=0.403  Sum_probs=78.3

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE--EEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeCCCCCCCc
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK--YRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~~~~~~~~   86 (115)
                      .|+|.|++|++|+..+..+.+|||+++.++...  .+|+++.+ +.+|.|||.|.|.+. +....|.|+|||++..++++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence            478999999999998888899999999998654  56777776 999999999999874 44578999999999888999


Q ss_pred             eeEEEEEEcchhhc
Q 048139           87 FIGSGRIQLHKALS  100 (115)
Q Consensus        87 ~lG~~~v~l~~l~~  100 (115)
                      +||++.+++.+..-
T Consensus        80 ~iG~~~i~l~~~~~   93 (124)
T cd04037          80 LIGETVIDLEDRFF   93 (124)
T ss_pred             eeEEEEEeeccccc
Confidence            99999999987753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.82  E-value=8.8e-20  Score=108.35  Aligned_cols=90  Identities=20%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             cCceEEEEEeeecCCCCCCC--CCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEW--ISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVV   76 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v   76 (115)
                      ..+.|.|.|++|+||+..+.  .+.+||||++.+..     .+++|++.++ +.||+|||.|.|.++.   ....|.|+|
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEE
Confidence            46789999999999998763  34589999999853     2668888876 9999999999999954   356799999


Q ss_pred             EeCCCCCCCceeEEEEEEcch
Q 048139           77 WNSHTLTPDEFIGSGRIQLHK   97 (115)
Q Consensus        77 ~~~~~~~~~~~lG~~~v~l~~   97 (115)
                      ||++..+++++||++.+++..
T Consensus        92 ~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          92 LNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             EeCCCCcCcceeceEEecCcC
Confidence            999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.82  E-value=6.7e-20  Score=108.93  Aligned_cols=91  Identities=20%  Similarity=0.288  Sum_probs=77.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.     ...++|+++++ +.+|.|||.|.|.+..   ....|.|+|||
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            357899999999999988888899999999873     23578888876 9999999999999842   24579999999


Q ss_pred             CCCCCCCceeEEEEEEcchh
Q 048139           79 SHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l   98 (115)
                      ++..+++++||++.+++...
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCCcEeEEEEECCccC
Confidence            99888899999999998875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.81  E-value=1.1e-19  Score=107.92  Aligned_cols=89  Identities=25%  Similarity=0.202  Sum_probs=76.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     .+.+|++.++ +.||.|||+|.|.++.   ....|.|+||+
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            3568999999999999888788899999999842     2567888776 9999999999999853   45789999999


Q ss_pred             CCCCCCCceeEEEEEEcc
Q 048139           79 SHTLTPDEFIGSGRIQLH   96 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~   96 (115)
                      ++..+++++||++.+...
T Consensus        92 ~d~~~~~~~iG~v~lg~~  109 (136)
T cd08406          92 STEDGKTPNVGHVIIGPA  109 (136)
T ss_pred             CCCCCCCCeeEEEEECCC
Confidence            998889999999999765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.81  E-value=9.1e-20  Score=108.36  Aligned_cols=90  Identities=20%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.  .   ..++|+++++ +.+|.|+|+|.|.+...   ...|.|+|||
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            457899999999999988888889999999984  2   3567888776 99999999999998532   3479999999


Q ss_pred             CCCCCCCceeEEEEEEcch
Q 048139           79 SHTLTPDEFIGSGRIQLHK   97 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~   97 (115)
                      ++..+++++||++.+++..
T Consensus        92 ~~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             CCCCCCCceeEEEEECCcc
Confidence            9988899999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.81  E-value=1.9e-19  Score=106.78  Aligned_cols=89  Identities=24%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|+|+|++|++|+..+..+.+|||+++.+.     ...++|+++++ +.+|.|+|.|.|.+..   ....|.|+|||
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            457899999999999998888999999999874     13678888766 9999999999999843   23469999999


Q ss_pred             CCCCCCCceeEEEEEEcc
Q 048139           79 SHTLTPDEFIGSGRIQLH   96 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~   96 (115)
                      ++..+++++||++.+++.
T Consensus        91 ~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          91 YDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCCCCCceeEEEEECCC
Confidence            998889999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.5e-20  Score=125.89  Aligned_cols=106  Identities=27%  Similarity=0.343  Sum_probs=93.4

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEe
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWN   78 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~   78 (115)
                      +....|+|+|..|+||-+.+.+|.+|||+++.+-     ..+++|++++. +.||.|||+|.|.+.+  ..+.|.|+|||
T Consensus       177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWD  255 (683)
T KOG0696|consen  177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWD  255 (683)
T ss_pred             ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEec
Confidence            4567899999999999999999999999999984     35889999987 9999999999999943  56889999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ++..++++|+|...+.+++|++. ..+.||.|++.
T Consensus       256 WDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsq  289 (683)
T KOG0696|consen  256 WDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQ  289 (683)
T ss_pred             ccccccccccceecccHHHHhhc-chhhHHHHhhh
Confidence            99999999999999999999874 46788887764

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.81  E-value=2.3e-18  Score=100.67  Aligned_cols=99  Identities=26%  Similarity=0.374  Sum_probs=81.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-cC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-IE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.     ...++|+++.+ +.+|.|++.|.|.. ..   ....|.++||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            357899999999999988878889999999873     24789999887 89999999999963 32   2468999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeE
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAA  107 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~  107 (115)
                      |++.. .+++||++.+++.++..++...-+
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~  120 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFN  120 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEee
Confidence            99877 889999999999999876544433

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.81  E-value=3.4e-18  Score=102.14  Aligned_cols=101  Identities=18%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC----
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT----   83 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~----   83 (115)
                      ..|.|.|.+|++|+...     ++||.+.+++.. .+|++..+ +.+|.|+|.|.|...+....|.|.||..+...    
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            46899999999998643     799999999887 49999887 89999999999997655678999998654321    


Q ss_pred             CCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           84 PDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        84 ~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      ++++||.+.||+..+..+.....||+|.+.+|
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~  116 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKG  116 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeecCCC
Confidence            57899999999999998777889999887653

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.80  E-value=3.6e-18  Score=100.35  Aligned_cols=102  Identities=29%  Similarity=0.450  Sum_probs=82.2

Q ss_pred             eEEEEEeeecCCCCCC--CCCCCCcEEEEEEC------CeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCC
Q 048139           10 PLEITVVGCYNLDDKE--WISRQDPYVCLEYG------SSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSH   80 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~   80 (115)
                      .|+|+|++|++|+..+  ..+..+||+.+.+.      ..+++|+++.+.+.+|.|+|+|.|.+.. ....|.++|||.+
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999877  57789999999983      4568999877634599999999999853 3457899999998


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      .. +++++|++.+++.++.. +  ..++.|.++.|
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~-g--~~~~~l~~~~~  113 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQ-G--YRHVPLLDSKG  113 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcC-c--eEEEEecCCCC
Confidence            77 88999999999999844 2  34567766543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.80  E-value=3.5e-19  Score=105.75  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=80.5

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.  .   ..++|+++++ +.||.|||+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            457899999999999998888899999999873  1   3578888776 9999999999999843   23469999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCe-eeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGF-DDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~-~~~~~~L~~~  113 (115)
                      ++..+++++||++.+....  .++. ..+|..|.+.
T Consensus        91 ~d~~~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~~  124 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYS--SGPSETNHWRRMLNS  124 (135)
T ss_pred             CCCCCCCcEEEEEEEcCcc--CCchHHHHHHHHHhC
Confidence            9988899999998865432  2222 3444455443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.80  E-value=3.3e-19  Score=106.06  Aligned_cols=91  Identities=15%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+ .+.+|||+++.+..     .+++|++.++ +.||.|||.|.|.++.   ....|.|+||+
T Consensus        13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            3578999999999999887 77799999998752     3668888776 9999999999999843   34689999999


Q ss_pred             CCCCCCCceeEEEEEEcchhh
Q 048139           79 SHTLTPDEFIGSGRIQLHKAL   99 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~   99 (115)
                      .+..+++++||++.+......
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~  111 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYA  111 (137)
T ss_pred             CCCCCCcceEEEEEECCcccC
Confidence            998889999999999865443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.80  E-value=5.5e-18  Score=99.38  Aligned_cols=90  Identities=27%  Similarity=0.454  Sum_probs=78.3

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      ..|.|+|.+|+ +......+.+||||.+.+++. .++|+++.+ +.+|.|+|.|.|.+.. ...|.|+|||++..+.+++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~   78 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVL   78 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcE
Confidence            46899999998 555555788999999999876 899999876 9999999999999864 4689999999998888999


Q ss_pred             eEEEEEEcchhhcc
Q 048139           88 IGSGRIQLHKALSQ  101 (115)
Q Consensus        88 lG~~~v~l~~l~~~  101 (115)
                      ||++.+++.++...
T Consensus        79 iG~~~i~l~~l~~~   92 (125)
T cd04021          79 LGEASLDLSDILKN   92 (125)
T ss_pred             EEEEEEEHHHhHhh
Confidence            99999999999764

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=2.4e-18  Score=102.46  Aligned_cols=91  Identities=24%  Similarity=0.291  Sum_probs=78.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|+||+..+..+.+|||+++.+..      .+++|++.++ +.||.|||+|.|.+..   ....|.|+||
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            4588999999999999888888899999998841      2568998876 9999999999999953   4468999999


Q ss_pred             eCCCCCCCceeEEEEEEcchh
Q 048139           78 NSHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l   98 (115)
                      +.+..+++++||++.+++...
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCC
Confidence            999888999999999987643

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.79  E-value=8.3e-18  Score=101.41  Aligned_cols=100  Identities=22%  Similarity=0.346  Sum_probs=79.9

Q ss_pred             EEEEEeeecC--CCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC---------CceEEE
Q 048139           11 LEITVVGCYN--LDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---------LRELNV   74 (115)
Q Consensus        11 l~v~i~~a~~--l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---------~~~L~~   74 (115)
                      ..++|..|++  ++.....+..|||+++.+.     ..+++|+++++ +.||.|||+|.|.+...         ...|.+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            4566666666  5566666779999999872     35899999887 99999999999999432         357999


Q ss_pred             EEEeCCCC-CCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           75 VVWNSHTL-TPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        75 ~v~~~~~~-~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      +|||++.+ .+|++||++.++|..+........+++|+
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~  120 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM  120 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence            99999865 46999999999999997766666677776

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.79  E-value=1.1e-18  Score=134.73  Aligned_cols=106  Identities=17%  Similarity=0.279  Sum_probs=92.8

Q ss_pred             cccccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeec--CCCceEEEEEEeC
Q 048139            3 ISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLI--EGLRELNVVVWNS   79 (115)
Q Consensus         3 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~--~~~~~L~~~v~~~   79 (115)
                      .|....|.|.|+|++|++|.  +..+.+||||++.+++. +.+|+++++ +.||.|||.|.|.+.  +....|+++|||+
T Consensus      1974 ~~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200       1974 LLQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred             HHhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCCCCceEEEEEec
Confidence            35667899999999999997  55788999999999954 889999987 999999999998874  3446799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      +.+++| .+|++.+++.++..++....||+|..
T Consensus      2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200       2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred             CccCCC-CCceEEEEHHHHhcCceeeeeeecCc
Confidence            988555 89999999999999999999999984

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.79  E-value=1.8e-17  Score=98.36  Aligned_cols=100  Identities=21%  Similarity=0.357  Sum_probs=80.3

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEEC-------------CeEEEEEEecCCCCCCee-ceeEEEeecCCCceEEEE
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG-------------SSKYRTKTCTDGGKNPTF-QEKFVLPLIEGLRELNVV   75 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-------------~~~~~t~~~~~~~~~P~w-~e~~~~~~~~~~~~L~~~   75 (115)
                      ...|++++|++|+ .+..+.+|||+++.+.             ...++|+++.+ +.||.| ||.|.|.+.. ...|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~-~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP-TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC-CCEEEEE
Confidence            3578999999998 6778999999999884             13689999887 999999 9999999854 3689999


Q ss_pred             EEeCCCCCC---CceeEEEEEEcchhhccCe---eeeEEeccc
Q 048139           76 VWNSHTLTP---DEFIGSGRIQLHKALSQGF---DDAAWPLQT  112 (115)
Q Consensus        76 v~~~~~~~~---~~~lG~~~v~l~~l~~~~~---~~~~~~L~~  112 (115)
                      |||+...++   +++||++.+++.++..++.   ...++.|..
T Consensus        79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k  121 (137)
T cd08691          79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGR  121 (137)
T ss_pred             EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCc
Confidence            999764433   6899999999999987543   334566653

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.77  E-value=2.3e-17  Score=95.54  Aligned_cols=97  Identities=26%  Similarity=0.294  Sum_probs=75.2

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCCCCc
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~~~~   86 (115)
                      |.|+|++|++|+..   +.+||||.+.+.+. .++|++..+  .+|.|||+|.|.+..   ....|.+.+|+.+....+.
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            78999999999866   68899999999864 578888764  899999999999965   3456888889887665566


Q ss_pred             eeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           87 FIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      ++|.+.  +..+..++....|++|.+++
T Consensus        77 ~~g~v~--l~~~~~~~~~~~w~~L~~~~  102 (117)
T cd08383          77 VIGKVA--LSKLDLGQGKDEWFPLTPVD  102 (117)
T ss_pred             EEEEEE--ecCcCCCCcceeEEECccCC
Confidence            666655  44444456667888998754

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.77  E-value=1.8e-17  Score=95.33  Aligned_cols=81  Identities=26%  Similarity=0.491  Sum_probs=67.8

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeC------
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNS------   79 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~------   79 (115)
                      |.|+|.+|++|+     +..||||.+.+..     ...+|+++.+ +.||.|||+|.|.+.. ...|.+.|||+      
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence            679999999995     4589999998852     4689999987 9999999999999964 67999999998      


Q ss_pred             -CCCCCCceeEEEEEEcchh
Q 048139           80 -HTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        80 -~~~~~~~~lG~~~v~l~~l   98 (115)
                       +..+.|+++|.+.+.|+.-
T Consensus        74 ~d~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          74 LDGEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             ccccCcccEEEEEEEEECHH
Confidence             3457899998888887643

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.76  E-value=1.1e-17  Score=98.57  Aligned_cols=91  Identities=11%  Similarity=0.181  Sum_probs=74.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCC-CCeeceeEEEeecC--CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGK-NPTFQEKFVLPLIE--GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~-~P~w~e~~~~~~~~--~~~~L~~~v~~   78 (115)
                      ..+.|+|.|++|++|+.....+..|||+++.+.     ..+++|++.++ +. +|.|||.|.|.+..  ....|.|++||
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d   90 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLYS   90 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEEe
Confidence            467899999999999976545567899999874     24778888776 64 69999999999954  23467889999


Q ss_pred             CCCCCCCceeEEEEEEcchh
Q 048139           79 SHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l   98 (115)
                      ++..+++++||++.+..+..
T Consensus        91 ~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          91 RSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCCcCCceEEEEEECCccC
Confidence            99888999999999998763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.75  E-value=7.6e-17  Score=92.54  Aligned_cols=87  Identities=23%  Similarity=0.408  Sum_probs=72.9

Q ss_pred             EEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeec---C--CCceEEEEEEeCCC
Q 048139           13 ITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLI---E--GLRELNVVVWNSHT   81 (115)
Q Consensus        13 v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~---~--~~~~L~~~v~~~~~   81 (115)
                      +-.++|++|+..+..+.+|||+++.+..      ..++|+++++ +.+|.|+ .|.|...   .  ....|.|+|||++.
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            3456789999999899999999998753      2589999887 9999999 6887752   1  25789999999998


Q ss_pred             CCCCceeEEEEEEcchhhcc
Q 048139           82 LTPDEFIGSGRIQLHKALSQ  101 (115)
Q Consensus        82 ~~~~~~lG~~~v~l~~l~~~  101 (115)
                      .+++++||++.+++.++...
T Consensus        82 ~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          82 SGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhcC
Confidence            88999999999999999853

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03008 Phospholipase D delta

Probab=99.74  E-value=4e-17  Score=117.81  Aligned_cols=108  Identities=19%  Similarity=0.342  Sum_probs=90.0

Q ss_pred             ccCceEEEEEeeecCCCCCCC------------------------------------------CCCCCcEEEEEECCe-E
Q 048139            6 IQGLPLEITVVGCYNLDDKEW------------------------------------------ISRQDPYVCLEYGSS-K   42 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~------------------------------------------~~~~~p~~~~~~~~~-~   42 (115)
                      +..|+|+++|.+|++|++.+.                                          .+.+|||+.+.++.. .
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv   90 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL   90 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce
Confidence            357899999999999874110                                          234699999999865 5


Q ss_pred             EEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           43 YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        43 ~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      .+|+++.+ +.||.|||+|.|.+......|.|+|||++.++ +++||++.+|+.++..+.....|++|...+|
T Consensus        91 ~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~  161 (868)
T PLN03008         91 ARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG  161 (868)
T ss_pred             eeEEeCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC
Confidence            68999877 89999999999999666679999999999886 5899999999999988878888988877653

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.73  E-value=1.3e-16  Score=91.73  Aligned_cols=86  Identities=20%  Similarity=0.295  Sum_probs=71.8

Q ss_pred             CCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCceeEEEEEEcchhhcc-
Q 048139           25 EWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ-  101 (115)
Q Consensus        25 ~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~-  101 (115)
                      ...|.+||||.+.+++. .++|+++.+ +.||.|||.|.|.+.+ ....|.|+|||++.. ++++||.+.++|.++... 
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~   85 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT   85 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence            35678999999999864 678888776 9999999999999854 457799999999987 899999999999999654 


Q ss_pred             CeeeeEEeccc
Q 048139          102 GFDDAAWPLQT  112 (115)
Q Consensus       102 ~~~~~~~~L~~  112 (115)
                      +....||+|.+
T Consensus        86 ~~~~~w~~L~~   96 (111)
T cd04052          86 SVGQQWFPLSG   96 (111)
T ss_pred             hccceeEECCC
Confidence            44567888864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.72  E-value=1e-16  Score=87.45  Aligned_cols=81  Identities=33%  Similarity=0.605  Sum_probs=71.0

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECC---eEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEEEEeCCCCCCCc
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      |+|+|.+|++|+..+..+..+||+.+.+..   ..++|++..+ +.+|.|++.|.|.+ .+....|.|+||+.+..++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~   79 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE   79 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence            789999999999877778899999999976   6799999887 89999999999997 344556999999999888899


Q ss_pred             eeEEEE
Q 048139           87 FIGSGR   92 (115)
Q Consensus        87 ~lG~~~   92 (115)
                      +||++.
T Consensus        80 ~iG~~~   85 (85)
T PF00168_consen   80 LIGEVK   85 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999973

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=8.2e-16  Score=105.83  Aligned_cols=106  Identities=23%  Similarity=0.261  Sum_probs=89.3

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeec---CCCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLI---EGLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~---~~~~~L~~~v~~~~   80 (115)
                      ....|.|+|++|.+|+..+..|..|||+++++.   ..+.+|++.++ +.||.|||+|.|.+.   -....|.++|||++
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d  243 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD  243 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence            456799999999999988855678999999986   35889999886 999999999999973   24678999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      .+++++++|++.++|..+........|.+|...
T Consensus       244 rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~  276 (421)
T KOG1028|consen  244 RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS  276 (421)
T ss_pred             CcccccEEEEEEecCccccccccceeeeccccc
Confidence            999999999999998888665555556677653

>cd00030 C2 C2 domain

Probab=99.68  E-value=2.5e-15  Score=83.69  Aligned_cols=99  Identities=32%  Similarity=0.598  Sum_probs=83.4

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCCCcee
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      |.|.|++|+++.........+||+.+.+.. ..++|++..+ +.+|.|++.|.|.+.. ....|.+++|+....+.++++
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence            468999999998766667789999999987 8889998876 8899999999999965 567899999999877778899


Q ss_pred             EEEEEEcchhh-ccCeeeeEEec
Q 048139           89 GSGRIQLHKAL-SQGFDDAAWPL  110 (115)
Q Consensus        89 G~~~v~l~~l~-~~~~~~~~~~L  110 (115)
                      |++.+++..+. .......|++|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999998 55555566554

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.66  E-value=5.7e-15  Score=82.46  Aligned_cols=92  Identities=29%  Similarity=0.502  Sum_probs=78.5

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCe---EEEEEEecCCCCCCeeceeEEEeecCC-CceEEEEEEeCCCCCCC
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSS---KYRTKTCTDGGKNPTFQEKFVLPLIEG-LRELNVVVWNSHTLTPD   85 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~-~~~L~~~v~~~~~~~~~   85 (115)
                      .|.|.|..|+++......+..+||+.+.+...   ..+|+.+.+ +.+|.|++.|.|.+... ...|.++||+....+.+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~   79 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD   79 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence            37899999999987766567899999999764   789998876 77999999999999654 78999999999877778


Q ss_pred             ceeEEEEEEcchhhccC
Q 048139           86 EFIGSGRIQLHKALSQG  102 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~~~  102 (115)
                      .++|.+.+++.++..+.
T Consensus        80 ~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       80 DFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             ceeEEEEEEHHHcccCc
Confidence            99999999999886654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.55  E-value=1.5e-13  Score=95.89  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=79.6

Q ss_pred             CceEEEEEeeecCCCCC-----CCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEEE
Q 048139            8 GLPLEITVVGCYNLDDK-----EWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVV   76 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~-----~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v   76 (115)
                      ..+|.|+|+.|++++..     .....+|||+++.+.+     ..++|.+.. .+.||.|||+|.|.+ .+...-|.|+|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~n-Ng~nPvWne~F~F~i~~PELAlLrf~V  486 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKN-NEWKPTWGEEFTFPLTYPDLALISFEV  486 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCC-CCcCceecceeEEEEEccCceEEEEEE
Confidence            35799999999987511     2234579999999853     356776554 499999999999998 45566789999


Q ss_pred             EeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           77 WNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        77 ~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      +|++...+++|+|++.+|+..+..+ .  .+.+|.+++|
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~~Lr~G-y--R~VpL~~~~g  522 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVSELIEG-I--RAVPLYDERG  522 (537)
T ss_pred             EecCCCCCCcEEEEEecchHHhcCC-c--eeEeccCCCc
Confidence            9999778899999999999998763 2  3346666654

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.55  E-value=1.4e-13  Score=81.03  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=75.6

Q ss_pred             EEEEEeeecCCCC--CCCCCC--CCcEEEEEECC---eEEEEEEecCCCCC--CeeceeEEEeecC--------------
Q 048139           11 LEITVVGCYNLDD--KEWISR--QDPYVCLEYGS---SKYRTKTCTDGGKN--PTFQEKFVLPLIE--------------   67 (115)
Q Consensus        11 l~v~i~~a~~l~~--~~~~~~--~~p~~~~~~~~---~~~~t~~~~~~~~~--P~w~e~~~~~~~~--------------   67 (115)
                      |+|.|-+|++++.  ....|.  .|||++..+..   .+++|.++.+ +.+  |.||+.|.|.+.-              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            7899999999653  334554  89999999863   5799999887 888  9999999988722              


Q ss_pred             ----------CCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCe
Q 048139           68 ----------GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF  103 (115)
Q Consensus        68 ----------~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~  103 (115)
                                ....|.++|||.+.+++|+++|++.+++..+..+..
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                      136789999999999999999999999998876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=7.7e-15  Score=103.72  Aligned_cols=102  Identities=27%  Similarity=0.461  Sum_probs=88.6

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC------
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL------   82 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~------   82 (115)
                      .+++++|++|++|.-.+..|++|||+...++..+.+|+++-. ..||.|+|.|+|++++....++++|||.++.      
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~-~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQ-ELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhh-ccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            478899999999998999999999999999999999999886 9999999999999998888999999997642      


Q ss_pred             -----CCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           83 -----TPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        83 -----~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                           ..|+|+|+..+.+..+.  |..+.||.|..+
T Consensus       374 qkl~resddflgqtvievrtls--gemdvwynlekr  407 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKR  407 (1283)
T ss_pred             HHhhhcccccccceeEEEEecc--cchhhhcchhhc
Confidence                 35889999999887764  466788877543

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.52  E-value=1.8e-13  Score=97.68  Aligned_cols=103  Identities=23%  Similarity=0.375  Sum_probs=81.6

Q ss_pred             eEEEEEeeecCCCCCCCC----CCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeC
Q 048139           10 PLEITVVGCYNLDDKEWI----SRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNS   79 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~----~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~   79 (115)
                      +|.|.|..++++.+....    ...+||+.+.+.+     ...+|+++.+.+.+|.|+|+|.|.+. +...-|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            799999999976543322    2368999888753     47899976666999999999999994 5667789999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      +..++|+|+|+..+|+..|.. |.  ...+|.++.|
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~-Gy--RhVpL~~~~G  729 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQ-GY--RHVPLLSREG  729 (746)
T ss_pred             CCCCcccccceeeccHHHhhC-ce--eeeeecCCCC
Confidence            999999999999999999865 33  2346666655

>PLN02270 phospholipase D alpha

Probab=99.49  E-value=1.2e-12  Score=94.96  Aligned_cols=109  Identities=16%  Similarity=0.153  Sum_probs=90.8

Q ss_pred             ccCceEEEEEeeecCCCCCC------------------CCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeec
Q 048139            6 IQGLPLEITVVGCYNLDDKE------------------WISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLI   66 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~------------------~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~   66 (115)
                      +..|+|+++|.+|++|++.+                  ..+.++||+.+.+.+. ..+|+++.+...||.|+|+|++.+.
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence            67899999999999998521                  1134699999999865 6699998764569999999999996


Q ss_pred             CCCceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           67 EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        67 ~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      .....+.|.|.|.+.++ ..+||.+.+|..++..+.....|++|.+.+|
T Consensus        85 h~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~  132 (808)
T PLN02270         85 HMASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDK  132 (808)
T ss_pred             cCcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCC
Confidence            66689999999988775 4599999999999999888899998887654

>PLN02952 phosphoinositide phospholipase C

Probab=99.47  E-value=1.6e-12  Score=92.31  Aligned_cols=104  Identities=23%  Similarity=0.245  Sum_probs=81.2

Q ss_pred             CceEEEEEeeecCCCCC------CCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeec-CCCceEEEE
Q 048139            8 GLPLEITVVGCYNLDDK------EWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVV   75 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~   75 (115)
                      ..+|.|.|+.|++++..      +....+|||+++.+.     ..+++|+++.+ +.||.|+|+|.|.+. +...-|.|+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PELAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPELALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCCccEEEEE
Confidence            46799999999887531      112235899999875     34778999887 799999999999984 445678999


Q ss_pred             EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |||++..+.++|+|++.+|+..|..+-   .+.+|.++.|
T Consensus       548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G  584 (599)
T PLN02952        548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKG  584 (599)
T ss_pred             EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCC
Confidence            999988788999999999999997643   3668877665

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.45  E-value=2.4e-12  Score=91.38  Aligned_cols=104  Identities=22%  Similarity=0.255  Sum_probs=80.0

Q ss_pred             CceEEEEEeeecCCCCC------CCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEE
Q 048139            8 GLPLEITVVGCYNLDDK------EWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVV   75 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~   75 (115)
                      ..+|.|+|+.+++++..      +.....|||+++.+.     ..+.+|++..+ +.||.|+|+|.|.+ .+...-|+|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~  546 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE  546 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence            46899999999986421      112347999999884     23578887665 89999999999998 4556788999


Q ss_pred             EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |+|++...+++|+|+..+|+..|..+ ..  ..+|.++.|
T Consensus       547 V~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR--~V~L~~~~G  583 (598)
T PLN02230        547 VHEHDINEKDDFGGQTCLPVSEIRQG-IH--AVPLFNRKG  583 (598)
T ss_pred             EEECCCCCCCCEEEEEEcchHHhhCc-cc--eEeccCCCc
Confidence            99999878899999999999999763 32  346666654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.43  E-value=2.1e-12  Score=72.52  Aligned_cols=84  Identities=23%  Similarity=0.379  Sum_probs=70.4

Q ss_pred             EEEEEeeecCCCCCC---CCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139           11 LEITVVGCYNLDDKE---WISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus        11 l~v~i~~a~~l~~~~---~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      |.|+|..|+++...+   +.+.++||+.+.++.. +.+|++    +.||.|||.|.|.+. ...++.+.|||... ...-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceec
Confidence            578999999998877   5677899999999866 788876    579999999999995 56899999999863 3445


Q ss_pred             eeEEEEEEcchhhc
Q 048139           87 FIGSGRIQLHKALS  100 (115)
Q Consensus        87 ~lG~~~v~l~~l~~  100 (115)
                      .+|..-+.+++|..
T Consensus        75 Pi~llW~~~sdi~E   88 (109)
T cd08689          75 PVGLLWLRLSDIAE   88 (109)
T ss_pred             ceeeehhhHHHHHH
Confidence            78999999998865

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.43  E-value=5.5e-13  Score=94.54  Aligned_cols=104  Identities=23%  Similarity=0.292  Sum_probs=93.1

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      .-|.|.|.+|+||+..+..|..||||.+.+.. ...+|.++.+ +..|-|+|+|.|.++..-..|.|.|||.+ +++|+.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~   82 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI   82 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence            45899999999999998889999999999985 5789999887 99999999999999888889999999999 999999


Q ss_pred             eEEEEEEcchhhccCeeeeEEecccCC
Q 048139           88 IGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        88 lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      ||.+.+.-.+|......+.||.|...+
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~VD  109 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQPVD  109 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceeccccC
Confidence            999999999998877667788887643

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.42  E-value=1.3e-12  Score=96.77  Aligned_cols=106  Identities=23%  Similarity=0.310  Sum_probs=90.4

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCC
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLT   83 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~   83 (115)
                      ...|-|+|.+..|.+|+..+..+..||||.+.+... .++|+++++ +.||.|||++..++.. ....+.+.|+|++...
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccccceEEEEEeecccCC
Confidence            357889999999999999988888999999999865 899999887 9999999999999964 4567899999999888


Q ss_pred             CCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           84 PDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        84 ~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      +++.||.+.++|+.+..++.....-+|.+
T Consensus      1116 knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038        1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred             CccccccccccHhhcCcCCccceeeeccC
Confidence            99999999999999877665544445543

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2.5e-12  Score=88.77  Aligned_cols=89  Identities=27%  Similarity=0.381  Sum_probs=74.8

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNS   79 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~   79 (115)
                      .+.|+|.|++|++|+..+..+..||||++.+.     ..+++|.+.++ +.||.|||+|.|.++.   ....|.|+|||+
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            58999999999999998888889999999874     23666777665 9999999999998853   235789999999


Q ss_pred             CCCCCCceeEEEEEEcch
Q 048139           80 HTLTPDEFIGSGRIQLHK   97 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~   97 (115)
                      +.++++++||.+.+....
T Consensus       376 d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccccccceeeEEEecCCC
Confidence            999999999998887654

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.40  E-value=1.1e-11  Score=87.94  Aligned_cols=104  Identities=23%  Similarity=0.298  Sum_probs=79.1

Q ss_pred             CceEEEEEeeecCCC----CCC--CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-cCCCceEEEE
Q 048139            8 GLPLEITVVGCYNLD----DKE--WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVV   75 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~----~~~--~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~   75 (115)
                      ..+|.|+|+.+++++    ...  .....|||+++.+.     ..+.+|+++.+ +.+|.|+|+|.|.+ .+...-|+|.
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeLAllRf~  529 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPELALLRLE  529 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCceeEEEEE
Confidence            357999999998753    111  12346899999885     34678999887 68999999999998 4456778999


Q ss_pred             EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |+|++....++|+|+..+|+..|..+ ..  ..+|.++.|
T Consensus       530 V~d~D~~~~ddfigq~~lPv~~Lr~G-yR--~V~L~~~~g  566 (581)
T PLN02222        530 VHEYDMSEKDDFGGQTCLPVWELSQG-IR--AFPLHSRKG  566 (581)
T ss_pred             EEECCCCCCCcEEEEEEcchhhhhCc-cc--eEEccCCCc
Confidence            99998777899999999999998763 32  336666554

>PLN02228 Phosphoinositide phospholipase C

Probab=99.35  E-value=3.3e-11  Score=85.28  Aligned_cols=103  Identities=24%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             ceEEEEEeeecCCCC----CC--CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCee-ceeEEEeec-CCCceEEEE
Q 048139            9 LPLEITVVGCYNLDD----KE--WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTF-QEKFVLPLI-EGLRELNVV   75 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~----~~--~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w-~e~~~~~~~-~~~~~L~~~   75 (115)
                      .+|.|+|+.|++|+.    ..  .....|||+.+.+.     ..+++|+++.+ +.+|.| +|.|.|.+. +...-|+|.
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCceeEEEEE
Confidence            479999999988731    11  12337899999874     34678998776 789999 999999984 456678999


Q ss_pred             EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |+|++..+.++|+|++.+|+..|.. |..  ..+|.+..|
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~-GYR--~VpL~~~~G  546 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKS-GVR--AVRLHDRAG  546 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhC-Cee--EEEccCCCC
Confidence            9999877789999999999999965 333  336666554

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.31  E-value=2.1e-11  Score=90.56  Aligned_cols=100  Identities=18%  Similarity=0.310  Sum_probs=85.6

Q ss_pred             cccCceEEEEEeeecCCCCCC--CCCCCCcEEEEEECC-eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCC
Q 048139            5 GIQGLPLEITVVGCYNLDDKE--WISRQDPYVCLEYGS-SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHT   81 (115)
Q Consensus         5 ~~~~~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~   81 (115)
                      +..-|+|.|+|.+|+++...+  ..+..|||+.+.+.. ...+|++.++ +.||+|||+|...+..-...|.+++||.+.
T Consensus       432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecccCCceeEEEEeccc
Confidence            356789999999999998877  567789999998753 3558898877 999999999999997777899999999888


Q ss_pred             CCCCceeEEEEEEcchhhccCeee
Q 048139           82 LTPDEFIGSGRIQLHKALSQGFDD  105 (115)
Q Consensus        82 ~~~~~~lG~~~v~l~~l~~~~~~~  105 (115)
                      ...|+.+|.+.++|..+...+...
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~  534 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKK  534 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccc
Confidence            889999999999999987765543

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.26  E-value=8.9e-11  Score=85.04  Aligned_cols=94  Identities=23%  Similarity=0.390  Sum_probs=75.6

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeec-eeEEEee-cCCCceEEEEEEe
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQ-EKFVLPL-IEGLRELNVVVWN   78 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~-e~~~~~~-~~~~~~L~~~v~~   78 (115)
                      +.+-+|.|.|+.|++|+.. .-+...||+.+.+.     ..+++|.++..++.||+|+ |.|+|++ .+...-|++.|++
T Consensus      1062 l~p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred             ccceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence            4566889999999999844 34456799999874     3455555544459999999 9999999 4566789999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhc
Q 048139           79 SHTLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~  100 (115)
                      .+.++...|||++.+|+..+..
T Consensus      1141 eDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             ccccCCcceeeeeecchhhhhc
Confidence            9988888899999999998865

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=7.3e-11  Score=84.04  Aligned_cols=110  Identities=22%  Similarity=0.240  Sum_probs=90.8

Q ss_pred             CccccccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeeceeEEEeec----CCC
Q 048139            1 MSISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEKFVLPLI----EGL   69 (115)
Q Consensus         1 ~~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~~~~~~~----~~~   69 (115)
                      +.++++..++++|.|+.|++|+.. ..|...||+.+.+.+       .++.|+.-.+ +..|.+||+|+|-+.    ++.
T Consensus      1117 fthpgtgehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~ 1194 (1283)
T KOG1011|consen 1117 FTHPGTGEHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEH 1194 (1283)
T ss_pred             ecCCCCCcceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCce
Confidence            468899999999999999999743 456678999887742       3566776555 889999999999983    345


Q ss_pred             ceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           70 RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        70 ~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      -+|.++|.|+.....|+.+|.+.++|.++..+|+...|++|..
T Consensus      1195 YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1195 YELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             EEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            6789999999877778899999999999999999999998854

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.11  E-value=3.2e-10  Score=80.05  Aligned_cols=104  Identities=14%  Similarity=0.255  Sum_probs=86.5

Q ss_pred             CceEEEEEeeecCCCCCCCCC-CCCcEEEEEECCeEEEEEEecCCCCCCeec-eeEEEeecC---CCceEEEEEEeCCCC
Q 048139            8 GLPLEITVVGCYNLDDKEWIS-RQDPYVCLEYGSSKYRTKTCTDGGKNPTFQ-EKFVLPLIE---GLRELNVVVWNSHTL   82 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~-~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~-e~~~~~~~~---~~~~L~~~v~~~~~~   82 (115)
                      +|+|-|.|..|++|+..+..+ ..|.|+.+.+.+..++|.+..+ +.||.|| +.|.|+++.   .++.|.+++.|++.-
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            688999999999999887654 3689999999999999999876 9999999 679999953   357899999999988


Q ss_pred             CCCceeEEEEEEcchhhccC----------eeeeEEeccc
Q 048139           83 TPDEFIGSGRIQLHKALSQG----------FDDAAWPLQT  112 (115)
Q Consensus        83 ~~~~~lG~~~v~l~~l~~~~----------~~~~~~~L~~  112 (115)
                      +.++-||.+.++++++....          ....||++.+
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifd  120 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFD  120 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecce
Confidence            88999999999999885432          2345777654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.04  E-value=7.8e-11  Score=84.49  Aligned_cols=93  Identities=20%  Similarity=0.305  Sum_probs=79.6

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeeceeEEEeecCC-----CceEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEKFVLPLIEG-----LRELNV   74 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~~~~~~~~~-----~~~L~~   74 (115)
                      ..++|.|-|+.|+++-+.+.+|.+|||+++.+..       ..++|+++.. +.||+|+|.|.|.+++.     ..-+.|
T Consensus       945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEE
Confidence            3456778889999999999999999999999863       3789999887 99999999999999532     456899


Q ss_pred             EEEeCCCCCCCceeEEEEEEcchhhc
Q 048139           75 VVWNSHTLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        75 ~v~~~~~~~~~~~lG~~~v~l~~l~~  100 (115)
                      +|+|++-...++|-|++.+.|.++..
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCCCC
Confidence            99999999999999999998887743

>PLN02352 phospholipase D epsilon

Probab=98.98  E-value=9.5e-09  Score=74.86  Aligned_cols=101  Identities=16%  Similarity=0.241  Sum_probs=76.8

Q ss_pred             ccCceEEEEEeeecCCCCCC----CCCC-CCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCC-ceEEEEEEe
Q 048139            6 IQGLPLEITVVGCYNLDDKE----WISR-QDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGL-RELNVVVWN   78 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~----~~~~-~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~-~~L~~~v~~   78 (115)
                      ...|+|+++|.+|.-+....    ..+. .+||+.+.+... ..+|   .+ ..||.|+|+|++.+.... ..+.|.|.|
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeecCCcEEEEEec
Confidence            56799999999997443221    1111 389999999865 4466   44 669999999999995444 689999988


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCe-eeeEEecccCCC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGF-DDAAWPLQTKTG  115 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~-~~~~~~L~~~~~  115 (115)
                      .     ..+||.+.+|..++..++. .+.|++|.+.+|
T Consensus        83 ~-----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~  115 (758)
T PLN02352         83 K-----CSILGRFHIQAHQIVTEASFINGFFPLIMENG  115 (758)
T ss_pred             C-----CeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence            2     5699999999999998756 788998887654

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.97  E-value=1.2e-09  Score=78.02  Aligned_cols=87  Identities=23%  Similarity=0.396  Sum_probs=69.4

Q ss_pred             CCCCCcEEEEEECCe----EEEEEEecCCCCCCeeceeEEEeecCC----------------CceEEEEEEeC-CCCCCC
Q 048139           27 ISRQDPYVCLEYGSS----KYRTKTCTDGGKNPTFQEKFVLPLIEG----------------LRELNVVVWNS-HTLTPD   85 (115)
Q Consensus        27 ~~~~~p~~~~~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~~~~----------------~~~L~~~v~~~-~~~~~~   85 (115)
                      .+.+|||+.+...+.    ..+|++.++ +.+|.|+|.|.|.+..+                ...+++++|+. +....+
T Consensus       148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~  226 (800)
T KOG2059|consen  148 NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIND  226 (800)
T ss_pred             CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhh
Confidence            345899999987643    358888776 99999999999998432                35688899994 455568


Q ss_pred             ceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           86 EFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      .|+|++.+++..+........||.|.+++
T Consensus       227 ~FlGevrv~v~~~~~~s~p~~W~~Lqp~~  255 (800)
T KOG2059|consen  227 VFLGEVRVPVDVLRQKSSPAAWYYLQPRP  255 (800)
T ss_pred             hhceeEEeehhhhhhccCccceEEEecCC
Confidence            99999999999998766778899988764

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.88  E-value=1.2e-09  Score=80.41  Aligned_cols=90  Identities=27%  Similarity=0.366  Sum_probs=77.2

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE--EEEEEecCCCCCCeeceeEEEee-cCCCceEEEEEEeCCCCCC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK--YRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVVWNSHTLTP   84 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v~~~~~~~~   84 (115)
                      ...++|++++|.+|.+.+..|.+|||+++.++...  -+...+.+ +.||+|++.|.+.. -+....|.++|||++..++
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~  690 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ  690 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence            34677999999999999999999999999998776  44455666 99999999998887 3456789999999999999


Q ss_pred             CceeEEEEEEcchh
Q 048139           85 DEFIGSGRIQLHKA   98 (115)
Q Consensus        85 ~~~lG~~~v~l~~l   98 (115)
                      |+.+|+..++++.-
T Consensus       691 d~~iget~iDLEnR  704 (1105)
T KOG1326|consen  691 DEKIGETTIDLENR  704 (1105)
T ss_pred             cchhhceehhhhhc
Confidence            99999999998764

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.88  E-value=2.6e-09  Score=80.00  Aligned_cols=105  Identities=29%  Similarity=0.227  Sum_probs=85.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee-c---CCCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL-I---EGLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~-~---~~~~~L~~~v~   77 (115)
                      ..++|.|-|..|++|+-...-..+||||++++.     ..+.+|++.++ +.+|.|||...... +   ..+++|.++||
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeeee
Confidence            468899999999999766555568999999985     24788999887 99999999988773 2   13578999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      .......+.++|.+.++|..+........||.|..
T Consensus      1601 s~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            99888888899999999998876656668888754

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.74  E-value=9e-10  Score=79.20  Aligned_cols=104  Identities=20%  Similarity=0.356  Sum_probs=77.2

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-------------------------------EEEEEEecCCCCCCee
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-------------------------------KYRTKTCTDGGKNPTF   57 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-------------------------------~~~t~~~~~~~~~P~w   57 (115)
                      -.+.|.+..|.++-.++..|.+|||+.+.+...                               .+-|.+.+ .+.||.|
T Consensus       114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW  192 (1103)
T KOG1328|consen  114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKW  192 (1103)
T ss_pred             HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcch
Confidence            345566778888888888899999998865200                               12334444 4999999


Q ss_pred             ceeEEEeecC-CCceEEEEEEeCCC---------------------------------CCC---CceeEEEEEEcchhhc
Q 048139           58 QEKFVLPLIE-GLRELNVVVWNSHT---------------------------------LTP---DEFIGSGRIQLHKALS  100 (115)
Q Consensus        58 ~e~~~~~~~~-~~~~L~~~v~~~~~---------------------------------~~~---~~~lG~~~v~l~~l~~  100 (115)
                      +|.|.|.+.. ....+++-|||++.                                 .+.   |+|+|++.+|+.++..
T Consensus       193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~  272 (1103)
T KOG1328|consen  193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP  272 (1103)
T ss_pred             hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence            9999999954 45689999999653                                 122   7899999999999976


Q ss_pred             cCeeeeEEecccCC
Q 048139          101 QGFDDAAWPLQTKT  114 (115)
Q Consensus       101 ~~~~~~~~~L~~~~  114 (115)
                      .| .++||.|.++.
T Consensus       273 ~G-ld~WFkLepRS  285 (1103)
T KOG1328|consen  273 DG-LDQWFKLEPRS  285 (1103)
T ss_pred             ch-HHHHhccCccc
Confidence            54 47788887764

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.53  E-value=9.2e-07  Score=51.61  Aligned_cols=99  Identities=20%  Similarity=0.362  Sum_probs=69.6

Q ss_pred             EEEEEeeecCCCCC-----------C-CCC-CCCcEEEEEEC----CeEEEEEEecCCCCCCeeceeEEEeec-----C-
Q 048139           11 LEITVVGCYNLDDK-----------E-WIS-RQDPYVCLEYG----SSKYRTKTCTDGGKNPTFQEKFVLPLI-----E-   67 (115)
Q Consensus        11 l~v~i~~a~~l~~~-----------~-~~~-~~~p~~~~~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~-----~-   67 (115)
                      |.|.|.+|.+|+-.           + ..+ ..++|+.+.+.    ....+|+++.+ +.-|.|+.++.|.++     + 
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence            35677777777521           1 111 25789999853    56788998887 999999999988862     1 


Q ss_pred             C----------CceEEEEEEeCCCC----------CCCceeEEEEEEcchhhccCe-eeeEEec
Q 048139           68 G----------LRELNVVVWNSHTL----------TPDEFIGSGRIQLHKALSQGF-DDAAWPL  110 (115)
Q Consensus        68 ~----------~~~L~~~v~~~~~~----------~~~~~lG~~~v~l~~l~~~~~-~~~~~~L  110 (115)
                      +          ..++.++||.....          .+|-+||.+.+|+.+|+.... ...||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1          25788999986432          234488999999999988654 4567764

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=98.41  E-value=8e-07  Score=64.39  Aligned_cols=88  Identities=20%  Similarity=0.388  Sum_probs=70.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCc-EEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDP-YVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLTP   84 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p-~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~~   84 (115)
                      -.|.+.++++.|+ +      ...|+ |+.++++.+.++|...++ +.+|+||+...|.+.+ +..-.++.|||.+.+++
T Consensus        52 ~~~~~~~~~~~~~-~------~~~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  123 (644)
T PLN02964         52 FSGIALLTLVGAE-M------KFKDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK  123 (644)
T ss_pred             ccCeEEEEeehhh-h------ccCCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence            3577888888874 2      12467 567778899999999887 9999999999999844 33346899999999999


Q ss_pred             CceeEEEEEEcchhhccC
Q 048139           85 DEFIGSGRIQLHKALSQG  102 (115)
Q Consensus        85 ~~~lG~~~v~l~~l~~~~  102 (115)
                      ++++|.+.+++.++..++
T Consensus       124 n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        124 NTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             HHhhhheeecHhhccHHH
Confidence            999999999888776654

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=7.6e-07  Score=59.18  Aligned_cols=87  Identities=22%  Similarity=0.344  Sum_probs=70.7

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEE
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVW   77 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~   77 (115)
                      ....-+.|+++++..|.-.+..+-+|||+...+.     ..+++|.+.++ +.+|.|+++|.+.+.++   ...+.|.+|
T Consensus       230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~kv~lsvg  308 (362)
T KOG1013|consen  230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKKVALSVG  308 (362)
T ss_pred             cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcceEEEeec
Confidence            4556788999999999988889999999999875     23677777666 99999999999999654   357889999


Q ss_pred             eCCCCCCCceeEEEEE
Q 048139           78 NSHTLTPDEFIGSGRI   93 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v   93 (115)
                      |++..+..+++|-...
T Consensus       309 d~~~G~s~d~~GG~~~  324 (362)
T KOG1013|consen  309 DYDIGKSNDSIGGSML  324 (362)
T ss_pred             ccCCCcCccCCCcccc
Confidence            9987767788877544

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=1.4e-07  Score=62.50  Aligned_cols=93  Identities=28%  Similarity=0.290  Sum_probs=74.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v~   77 (115)
                      ....+.+++.+|.+|++.+..+..|||+++.+..     .+.+|++..+ +.||.|+|......    ......+.+.+.
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vc  169 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVC  169 (362)
T ss_pred             hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeec
Confidence            3456889999999999999999999999998752     3567777766 99999999877664    123467788888


Q ss_pred             eCCCCCCCceeEEEEEEcchhhc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~  100 (115)
                      |.+.+...+++|+..+++..+..
T Consensus       170 dn~~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  170 DNDKKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             cCcccccccCcccchhhhhccCh
Confidence            98888888999999988776643

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.16  E-value=1.2e-05  Score=56.77  Aligned_cols=83  Identities=24%  Similarity=0.435  Sum_probs=66.5

Q ss_pred             eeecCCCCCCCCCCCCcEEEEEEC------CeEEEEEEecCCCCCCeeceeEEEee-----cCCCceEEEEEEeCCCCCC
Q 048139           16 VGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKTCTDGGKNPTFQEKFVLPL-----IEGLRELNVVVWNSHTLTP   84 (115)
Q Consensus        16 ~~a~~l~~~~~~~~~~p~~~~~~~------~~~~~t~~~~~~~~~P~w~e~~~~~~-----~~~~~~L~~~v~~~~~~~~   84 (115)
                      .+|.+|.+++.+++.+||..+.-.      ...++|.+.++ +.+|.|.+ |....     .+....+.+.+||++..++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            567888888999999999777542      23678888887 99999976 55453     2346788999999998889


Q ss_pred             CceeEEEEEEcchhhc
Q 048139           85 DEFIGSGRIQLHKALS  100 (115)
Q Consensus        85 ~~~lG~~~v~l~~l~~  100 (115)
                      ++++|++..++..+..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999999988865

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.13  E-value=2e-06  Score=58.85  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=78.2

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC--C----------
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE--G----------   68 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~----------   68 (115)
                      .....|++.|+++++++........|.|+.+.+-     ..+.+|.++++ +.+|.|+|.|-+.+..  +          
T Consensus       364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fk  442 (523)
T KOG3837|consen  364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFK  442 (523)
T ss_pred             cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHH
Confidence            3455677888888777644332234567777653     34677888887 9999999999999843  1          


Q ss_pred             CceEEEEEEeCCCC-CCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           69 LRELNVVVWNSHTL-TPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        69 ~~~L~~~v~~~~~~-~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ..-++|+||.+..+ ..|.++|.+.+.+..|...-..+..++|++.
T Consensus       443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG  488 (523)
T KOG3837|consen  443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG  488 (523)
T ss_pred             hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence            24689999998755 4588999999999988776666777777653

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=4e-06  Score=56.69  Aligned_cols=106  Identities=20%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEe-C
Q 048139            7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWN-S   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~-~   79 (115)
                      ..|.++|-|++|++|...... ..+.||+++++..     .+.+|+...+ +.+|-+.....|.-.+...-|.+.+|. +
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~~k~Lq~tv~gdy  345 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPPGKYLQGTVWGDY  345 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCCccEEEEEEeccc
Confidence            467899999999999765432 3578999998852     3677888776 888888787888877777889999987 4


Q ss_pred             CCCCCCceeEEEEEEcchhhccC-eeeeEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQG-FDDAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~-~~~~~~~L~~~  113 (115)
                      ..+.++.|+|.+++-+.+|-... ....||+|.+.
T Consensus       346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            55666789999999999996655 66788888653

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=98.04  E-value=0.00012  Score=49.66  Aligned_cols=99  Identities=12%  Similarity=0.179  Sum_probs=77.0

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeec--------CCCceEEEEEEeCC-C
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLI--------EGLRELNVVVWNSH-T   81 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~--------~~~~~L~~~v~~~~-~   81 (115)
                      +.|.|++|++.+..   .+....+...+.+....|..+.. +..|.|+....++++        .....+++++|..+ .
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            57889999988744   23345778888999999998776 889999999999973        23578999999987 5


Q ss_pred             CCCCceeEEEEEEcchh---hcc--CeeeeEEecccC
Q 048139           82 LTPDEFIGSGRIQLHKA---LSQ--GFDDAAWPLQTK  113 (115)
Q Consensus        82 ~~~~~~lG~~~v~l~~l---~~~--~~~~~~~~L~~~  113 (115)
                      .+..+.+|.+.++|...   ..+  .....||+|++-
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             CCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            56678999999999988   443  345578888775

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.84  E-value=3.7e-05  Score=57.22  Aligned_cols=88  Identities=25%  Similarity=0.467  Sum_probs=68.5

Q ss_pred             cccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeecee-EEEee--cCCCceEEE
Q 048139            5 GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEK-FVLPL--IEGLRELNV   74 (115)
Q Consensus         5 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~-~~~~~--~~~~~~L~~   74 (115)
                      ++-.+++.|+|+++.-|.+.    +...||.+.+.+       ..++|++..+.+.||.|+|+ |.|.-  -+....|.|
T Consensus       699 gvIA~t~sV~VISgqFLSdr----kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi  774 (1189)
T KOG1265|consen  699 GVIAATLSVTVISGQFLSDR----KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI  774 (1189)
T ss_pred             ceEEeeEEEEEEeeeecccc----ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence            44567899999999888654    345798887742       46788887777999999965 77773  567788999


Q ss_pred             EEEeCCCCCCCceeEEEEEEcchhhc
Q 048139           75 VVWNSHTLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        75 ~v~~~~~~~~~~~lG~~~v~l~~l~~  100 (115)
                      .||+.+    ..++|+-.+|+..+..
T Consensus       775 avyeEg----gK~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  775 AVYEEG----GKFIGQRILPVDGLNA  796 (1189)
T ss_pred             eeeccC----CceeeeeccchhcccC
Confidence            999876    4699999999988754

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.80  E-value=7.8e-06  Score=61.09  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=68.5

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEee---c-------CCCceEEEEEEeCC
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL---I-------EGLRELNVVVWNSH   80 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~---~-------~~~~~L~~~v~~~~   80 (115)
                      +++.|.+|+.|.-.+..+.+|||+.+.+.++.+.|-++.+ +.+|+|+.+..|.-   .       .....+.+++||.+
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            4455567777777777778999999999999999999886 99999999988873   1       12356789999999


Q ss_pred             CCCCCceeEEEEEEcchh
Q 048139           81 TLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l   98 (115)
                      ..+.++|+|.......-.
T Consensus       287 r~g~~ef~gr~~~~p~V~  304 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRPYVM  304 (1105)
T ss_pred             hhchHHhhcccccceEEE
Confidence            888999999976654433

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.76  E-value=9.3e-05  Score=40.56  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             EEEeeecCCCCCCCCCC-CCcEEEEEE--CC-eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCCCC
Q 048139           13 ITVVGCYNLDDKEWISR-QDPYVCLEY--GS-SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLTPD   85 (115)
Q Consensus        13 v~i~~a~~l~~~~~~~~-~~p~~~~~~--~~-~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~~~   85 (115)
                      ++++.++++......+. +..|++--+  .. ...+|...+ +..||.|.|+|.|.+.-   ..-.|-++|+.  ...+.
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            67888888865443332 334554433  22 345666544 59999999999999832   34567888887  45678


Q ss_pred             ceeEEEEEEcchhhc
Q 048139           86 EFIGSGRIQLHKALS  100 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~  100 (115)
                      +.+|.+.+.++.+-.
T Consensus        80 e~iG~~sL~l~s~ge   94 (103)
T cd08684          80 RTIGECSLSLRTLST   94 (103)
T ss_pred             ceeeEEEeecccCCH
Confidence            899999999888644

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.45  E-value=0.0026  Score=39.37  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVV   76 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v   76 (115)
                      -...+.|+|..+.++.-  .....+.|+.+.+  ++.    ...|+.... ...+.|+|.+.|.+    -+....|.|.|
T Consensus         6 ~~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti   82 (173)
T cd08693           6 IEEKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAI   82 (173)
T ss_pred             cCCCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEE
Confidence            34678999999988864  1122345665543  333    334444332 46799999999987    24567899999


Q ss_pred             EeCCCCC----------------CCceeEEEEEEcchhh
Q 048139           77 WNSHTLT----------------PDEFIGSGRIQLHKAL   99 (115)
Q Consensus        77 ~~~~~~~----------------~~~~lG~~~v~l~~l~   99 (115)
                      |+.....                .+..+|.+.++|-+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~  121 (173)
T cd08693          83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK  121 (173)
T ss_pred             EEecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence            9865321                2468999999987753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.31  E-value=0.0059  Score=37.29  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEE
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVW   77 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~   77 (115)
                      ...+.|.|+.+.++.-..   ..+.|+.+.+  ++.    ...|+...  ..++.|||.+.|.+.    +....|.|+||
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~   81 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEE
Confidence            467899999998886432   3466776654  333    22343332  357999999999872    45678999999


Q ss_pred             eCCCCC----CCceeEEEEEEcchh
Q 048139           78 NSHTLT----PDEFIGSGRIQLHKA   98 (115)
Q Consensus        78 ~~~~~~----~~~~lG~~~v~l~~l   98 (115)
                      +.....    ....+|.+.++|-+.
T Consensus        82 ~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          82 SVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             EEecccCCCCceEEEEEEEEEEECC
Confidence            865321    224699999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.21  E-value=0.003  Score=38.58  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             CCCcEEEEEEC--Ce----EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEEeCCCCCCCceeEEEEEEcchh
Q 048139           29 RQDPYVCLEYG--SS----KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        29 ~~~p~~~~~~~--~~----~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l   98 (115)
                      ..+.|+.+.+.  +.    ...|....- +..+.|||.+.|++.    +....|.|+||+....++...+|.++++|-+.
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            35667766553  33    234444333 567889999999972    45678999999987555677999999998875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.19  E-value=0.0067  Score=36.79  Aligned_cols=88  Identities=16%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEEEe
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVVWN   78 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v~~   78 (115)
                      ..++|.+....++.... ....+.|+.+.+  ++.    ...|..... +.++.|||.+.|.+    -+....|.+++|+
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~   85 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA   85 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence            46778888777665411 112345555544  332    223333322 36899999999986    2456789999999


Q ss_pred             CCCCC--CCceeEEEEEEcchh
Q 048139           79 SHTLT--PDEFIGSGRIQLHKA   98 (115)
Q Consensus        79 ~~~~~--~~~~lG~~~v~l~~l   98 (115)
                      .....  .+..+|.+.++|-+.
T Consensus        86 ~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          86 VSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             EecCCCCcceEEEEEeEEeEcc
Confidence            76443  467999999998875

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.10  E-value=0.021  Score=33.91  Aligned_cols=99  Identities=17%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCe---EEEEEEecCCCCCCeeceeEEEee----cC-----CCceEEEEEE
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSS---KYRTKTCTDGGKNPTFQEKFVLPL----IE-----GLRELNVVVW   77 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~---~~~t~~~~~~~~~P~w~e~~~~~~----~~-----~~~~L~~~v~   77 (115)
                      .+.+.|....+++.    .....++....+..   ...|.......-.-.|++.|.+.+    ..     ....+.|.|+
T Consensus         8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~   83 (143)
T PF10358_consen    8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF   83 (143)
T ss_pred             EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence            46778888877764    22334666665544   345554443355688999998886    11     2346888888


Q ss_pred             eCCCCCCCceeEEEEEEcchhhcc--CeeeeEEeccc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQ--GFDDAAWPLQT  112 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~--~~~~~~~~L~~  112 (115)
                      .....++...+|.+.+.|.++...  ......++|..
T Consensus        84 ~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~  120 (143)
T PF10358_consen   84 EVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK  120 (143)
T ss_pred             EecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc
Confidence            874333336899999999999885  34445566654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.92  E-value=0.01  Score=36.65  Aligned_cols=92  Identities=16%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEec---CCCCCCeeceeEEEee----cCCCceEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCT---DGGKNPTFQEKFVLPL----IEGLRELN   73 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~---~~~~~P~w~e~~~~~~----~~~~~~L~   73 (115)
                      -...+.|+|..+.+++..-.....+-|+.+.+  +.+    ...|+...   .-...+.|||.+.|.+    -+....|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            34678899999988876543334566776654  333    22333211   1122567999999987    24567899


Q ss_pred             EEEEeCCCCC---------CCceeEEEEEEcchh
Q 048139           74 VVVWNSHTLT---------PDEFIGSGRIQLHKA   98 (115)
Q Consensus        74 ~~v~~~~~~~---------~~~~lG~~~v~l~~l   98 (115)
                      |.+|+.....         .+..+|.+.++|-+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9999865443         356899999998875

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.86  E-value=0.03  Score=34.09  Aligned_cols=94  Identities=19%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             ceEEEEEeeecCCCCC-C-CCCCCCc--EEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCC--------------Cc
Q 048139            9 LPLEITVVGCYNLDDK-E-WISRQDP--YVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG--------------LR   70 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~-~-~~~~~~p--~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------------~~   70 (115)
                      .-|++.|..++-.-+. . ..+..+.  .+-+.+.+++++|+.+.. +.+|.|+|.|.|++...              ..
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~   87 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLSISD   87 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence            4577788776433221 1 0033333  344456799999999886 99999999999998322              24


Q ss_pred             eEEEEEEeCCCCCCCceeEEEEEEcchhhccCe
Q 048139           71 ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF  103 (115)
Q Consensus        71 ~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~  103 (115)
                      .+++-+...+..+...++|...+.=..++..+.
T Consensus        88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~  120 (156)
T PF15627_consen   88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN  120 (156)
T ss_pred             ceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence            677777666655555788887776665555444

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=96.76  E-value=0.015  Score=32.15  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=47.7

Q ss_pred             CCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhhc
Q 048139           29 RQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        29 ~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~  100 (115)
                      ..+..+.+.+.+. ...|.- +. ..+..|++.|.++++. .++|+|+||-.+-   ..+.|...+.|.+...
T Consensus         8 ~~eV~avLklDn~~VgqT~W-k~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~   74 (98)
T cd08687           8 CSEVSAVLKLDNTVVGQTQW-KP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH   74 (98)
T ss_pred             ccceEEEEEEcCeEEeeccc-cc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc
Confidence            3566777877764 445554 22 5688999999999964 4799999988762   4577888888888543

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.48  E-value=0.036  Score=33.08  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=39.2

Q ss_pred             EEEEecCCC-CCCeeceeEEEee----cCCCceEEEEEEeCCCCCCC----ceeEEEEEEcchh
Q 048139           44 RTKTCTDGG-KNPTFQEKFVLPL----IEGLRELNVVVWNSHTLTPD----EFIGSGRIQLHKA   98 (115)
Q Consensus        44 ~t~~~~~~~-~~P~w~e~~~~~~----~~~~~~L~~~v~~~~~~~~~----~~lG~~~v~l~~l   98 (115)
                      .|+.... + ..+.|+|.+.|.+    -+....|.|+||........    ..||.+.+++-+.
T Consensus        23 ~T~~~~~-~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPF-SFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EES-S-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             ecccccc-ccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            5555443 4 6999999999997    24667899999997654444    6999999998887

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.41  E-value=0.066  Score=33.39  Aligned_cols=89  Identities=9%  Similarity=0.044  Sum_probs=53.9

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe---EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEEe
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS---KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVWN   78 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~---~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~~   78 (115)
                      ...++|+|..+.. +..........|+.+.+  +..   ..+|....- +.++.|||.+.|.+.    +....|.|+||+
T Consensus         9 ~~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~   86 (178)
T cd08399           9 DRKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEE
Confidence            4578888888753 32221222234555433  322   224444443 567999999999972    456789999998


Q ss_pred             CCCCC----------------CCceeEEEEEEcchh
Q 048139           79 SHTLT----------------PDEFIGSGRIQLHKA   98 (115)
Q Consensus        79 ~~~~~----------------~~~~lG~~~v~l~~l   98 (115)
                      .....                .+..||-+.+.|-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence            53211                245778888888764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.87  E-value=0.23  Score=31.30  Aligned_cols=55  Identities=18%  Similarity=0.271  Sum_probs=39.5

Q ss_pred             EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCC-C-CceeEEEEEEcch
Q 048139           42 KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLT-P-DEFIGSGRIQLHK   97 (115)
Q Consensus        42 ~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~-~-~~~lG~~~v~l~~   97 (115)
                      .++|-+... ..+|.|+|++.+.++.   ....|.|+++...... + ....|.+.+||.+
T Consensus        54 e~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            567777766 7899999999999853   3456888777643221 1 2578999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.63  E-value=0.17  Score=31.53  Aligned_cols=55  Identities=16%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCC-CC--ceeEEEEEEcch
Q 048139           42 KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLT-PD--EFIGSGRIQLHK   97 (115)
Q Consensus        42 ~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~-~~--~~lG~~~v~l~~   97 (115)
                      .+.|.+... ..+|.|+|+|.+.++.   ....|.|++++...-. ++  ..+|.+.+||.+
T Consensus        60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            455555555 7899999999999853   3457889998865322 12  689999999988

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=95.12  E-value=0.21  Score=28.57  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=39.1

Q ss_pred             EEEEEEC-CeEEEEEEecCCCCCCeeceeEEEeecCC--------CceEEEEEEeCCCCCCCceeEEEEEEcchhhccCe
Q 048139           33 YVCLEYG-SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--------LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF  103 (115)
Q Consensus        33 ~~~~~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~  103 (115)
                      ||.+.+. -+.+.|.++.  +.+|.++-+..+.+...        ...+.++++..- ....+.+|.+++++.++.....
T Consensus         2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~   78 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG   78 (107)
T ss_dssp             EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred             EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence            4444443 4567777765  78999998888887432        368899999866 3357799999999999986432


Q ss_pred             --eeeEEecccC
Q 048139          104 --DDAAWPLQTK  113 (115)
Q Consensus       104 --~~~~~~L~~~  113 (115)
                        ....-.|.+.
T Consensus        79 ~~i~~~~~l~g~   90 (107)
T PF11618_consen   79 ERIHGSATLVGV   90 (107)
T ss_dssp             --EEEEEEE-BS
T ss_pred             ceEEEEEEEecc
Confidence              3344455444

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=95.06  E-value=0.44  Score=29.39  Aligned_cols=69  Identities=12%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             CCcEEEEEECCe-EEEEEEecC-CCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchhh
Q 048139           30 QDPYVCLEYGSS-KYRTKTCTD-GGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKAL   99 (115)
Q Consensus        30 ~~p~~~~~~~~~-~~~t~~~~~-~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~   99 (115)
                      ..-|+++.+.++ ..+|+...- ....-.|++.|.+.+..-.+.|.++||.... ..+.+|+++.+|+-...
T Consensus        37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            456888888765 444444221 1334557888888886666899999999876 57889999999976543

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.66  E-value=0.65  Score=29.45  Aligned_cols=54  Identities=11%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             EEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCC----CCCceeEEEEEEcc
Q 048139           42 KYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTL----TPDEFIGSGRIQLH   96 (115)
Q Consensus        42 ~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~----~~~~~lG~~~v~l~   96 (115)
                      .++|-+... ..+|.|+|++.+.++.   ....|.++++.....    ..+...|.+.+||-
T Consensus        54 e~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            667777555 7799999999999853   356788888774321    12357899999986

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.64  E-value=0.4  Score=26.89  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=41.3

Q ss_pred             EEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEeec----CCCceEEEEEEeCC
Q 048139           11 LEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPLI----EGLRELNVVVWNSH   80 (115)
Q Consensus        11 l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~~----~~~~~L~~~v~~~~   80 (115)
                      +.+.+....+..........+.|+.+.+  ++.    ...|....- ...+.|||.+.|.+.    +....|.+++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5556666555543322222366776654  333    234443332 556899999999872    45678999999864

Outlier of C2 family.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.45  E-value=0.22  Score=33.93  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=54.1

Q ss_pred             cCceEEEEEeeecCCCCCCC-CC-CCCcEEEEEECCe-EEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC
Q 048139            7 QGLPLEITVVGCYNLDDKEW-IS-RQDPYVCLEYGSS-KYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT   83 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~-~~-~~~p~~~~~~~~~-~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~   83 (115)
                      ..|.|.+.+..+++|+-... .| ..+-||++....+ +-+|.+... ...-.|.|.|...+-+ .+.+.+-||.+..-.
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccC-CCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            34788899999999975433 22 2467888877643 556665433 5556788999888753 257888888887666


Q ss_pred             CCcee
Q 048139           84 PDEFI   88 (115)
Q Consensus        84 ~~~~l   88 (115)
                      ++++.
T Consensus       127 RHKLC  131 (442)
T KOG1452|consen  127 RHKLC  131 (442)
T ss_pred             hcccc
Confidence            66653

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=94.25  E-value=0.15  Score=36.84  Aligned_cols=61  Identities=26%  Similarity=0.425  Sum_probs=47.3

Q ss_pred             EEEEEEecCCCCCCeeceeEEEee-cCCCceEEEEEEeCCC----CCCCceeEEEEEEcchhhccCe
Q 048139           42 KYRTKTCTDGGKNPTFQEKFVLPL-IEGLRELNVVVWNSHT----LTPDEFIGSGRIQLHKALSQGF  103 (115)
Q Consensus        42 ~~~t~~~~~~~~~P~w~e~~~~~~-~~~~~~L~~~v~~~~~----~~~~~~lG~~~v~l~~l~~~~~  103 (115)
                      ..+|.++.+ ..+|.|.+.|.+.. .+..+.|++++++.+.    ....+|+|++...+.++.....
T Consensus        42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~  107 (529)
T KOG1327|consen   42 VGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG  107 (529)
T ss_pred             ccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence            347777876 89999999888776 4566789999998653    3457799999999998876543

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=93.98  E-value=0.63  Score=28.90  Aligned_cols=53  Identities=17%  Similarity=0.215  Sum_probs=38.4

Q ss_pred             EEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCC-----CCCceeEEEEEEcch
Q 048139           44 RTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTL-----TPDEFIGSGRIQLHK   97 (115)
Q Consensus        44 ~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~-----~~~~~lG~~~v~l~~   97 (115)
                      .+.++.. ..+|.|++++.+.++.   ....|.|++++...-     .....+|.+.+||.+
T Consensus        55 ~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            3344444 4799999999999843   356788999885522     335689999999876

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.68  E-value=1.3  Score=27.79  Aligned_cols=56  Identities=16%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCCC------CCceeEEEEEEcch
Q 048139           41 SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTLT------PDEFIGSGRIQLHK   97 (115)
Q Consensus        41 ~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~~------~~~~lG~~~v~l~~   97 (115)
                      ....|.+... +.+|.|.+++.+.++.   ..-.|.|++++...-.      ....+|.+.+||-+
T Consensus        54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            3556666665 7899999999999843   3457888888743211      13578999999764

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.28  E-value=1.8  Score=27.26  Aligned_cols=56  Identities=14%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCCCC---------CCCceeEEEEEEcch
Q 048139           41 SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSHTL---------TPDEFIGSGRIQLHK   97 (115)
Q Consensus        41 ~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~~~---------~~~~~lG~~~v~l~~   97 (115)
                      ....|.+... +.+|.|.|++.+.++.   ..-.|.|++++....         .....+|.+.+||..
T Consensus        56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            3566677666 7899999999998843   345788998885421         123578999999876

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=86.60  E-value=0.18  Score=37.44  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=40.7

Q ss_pred             CCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCceeEEEEEEcchh
Q 048139           30 QDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        30 ~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l   98 (115)
                      .+||+.+.+..........+..+..|.|+++|+..+..+ ..+.+.++.......+.+..++.+..+++
T Consensus        28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~   95 (694)
T KOG0694|consen   28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQ   95 (694)
T ss_pred             hhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence            467877776533222222234488999999999997543 56777787765444444334444433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		4e-07

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           LE+ +V    L+D ++++  DPYV L   +   ++      G  P + E F+  + EG  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
           EL   +++    T D+ +G   I L     +G
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-30
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	5e-16
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-12
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-12
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-11
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-11
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-10
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-10
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-10
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-10
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	6e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-10
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-09
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-09
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-09
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-09
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	4e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	5e-09
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	5e-09
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-09
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	8e-09
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	9e-09
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-06
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-08
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-07
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-08
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	6e-08
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-08
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-07
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-07
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-07
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	8e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-06
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-06
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-06
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	6e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	6e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-05

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  104 bits (261), Expect = 2e-30
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 4   SGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVL 63
           SG  G  LE+ +V    L+D ++++  DPYV L   +   ++      G  P + E F+ 
Sbjct: 6   SGPHGT-LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF 64

Query: 64  PLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
            + EG  EL   +++    T D+ +G   I L     +G          K  
Sbjct: 65  TVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE 116

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 68.8 bits (168), Expect = 5e-16
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           L+ITV+     ++K+      PYV +       +T+ C +   +P +++   +  +  + 
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVI-VTPVS 95

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ 101
           +L+  VW+  TL  D  +G+  + +++ L  
Sbjct: 96  KLHFRVWSHQTLKSDVLLGTAALDIYETLKS 126

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 57.9 bits (140), Expect = 3e-12
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 14/116 (12%)

Query: 11  LEITVVGCYNLDDKEWISRQ-----------DPYVCLEYGSSKYRTKTCTDGGKNPTFQE 59
           L+I +    +L    W  R            DPY+ L    S+           +P + +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 60  KFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFD--DAAWPLQTK 113
           +FV  +  G R++ + V++   +  D+F+ +  IQ  + L  G    +    L+ +
Sbjct: 68  EFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE 122

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 58.1 bits (140), Expect = 4e-12
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 11  LEITVVGCYNLDDKEWISRQ----------DPYVCLEYGSSK-YRTKTCTDGGKNPTFQE 59
           L + +     L    W  R           DPY+ +     +  +T T       PT+ E
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQ-KTNKPTYNE 89

Query: 60  KFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPL 110
           +F   + +G   L + V++   L  D F+ +  +Q  + L        +  
Sbjct: 90  EFCANVTDG-GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEG 139

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 11  LEITVVGCYNL-DDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPL---- 65
           L + V    N+   K      DP V + +   K +TK   D   NP + E     L    
Sbjct: 9   LRVIVESASNIPKTKFGKP--DPIVSVIFKDEKKKTKKV-DNELNPVWNEILEFDLRGIP 65

Query: 66  IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT 112
           ++    L ++V +  T+  ++ IG+  + L            + L +
Sbjct: 66  LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS 112

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 16/117 (13%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           + ITVV    L  K+     DPYV ++ G +K RTKT   G  NP ++E F         
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTI-YGNLNPVWEENFHFECHNSSD 77

Query: 71  ELNVVVWN-----------SHTLTPDEFIGSGRIQLHKALSQGFDDAAW-PLQTKTG 115
            + V V +                 D+F+G   I++ + LS   D   W  L  +T 
Sbjct: 78  RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV-RTLSGEMDV--WYNLDKRTD 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGK--NPTFQEKFVLPLIEG 68
           L++ V+   +L   ++  + DP+  LE G+ + +T T     K  NP + + F  P+ + 
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY---KNLNPEWNKVFTFPIKDI 71

Query: 69  LRELNVVVWNSHTLTPDEFIGSGRIQLHK 97
              L V V++     P +F+G   I L  
Sbjct: 72  HDVLEVTVFDEDGDKPPDFLGKVAIPLLS 100

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 12/111 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKTCTDGGK--NPTFQEKFV 62
           + + V+    L  K+ +   DPYV +          +  +TKT     K  NP + E+ +
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK---KSLNPKWNEEIL 78

Query: 63  LPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113
             +      L   V++ + LT D+F+G   + L+  L         P   K
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYP-LPTENPRLERPYTFK 128

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 12/111 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKTCTDGGK--NPTFQEKFV 62
           + + V+    L  K+ +   DPYV +          +  +TKT     K  NP + E+ +
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK---KSLNPKWNEEIL 66

Query: 63  LPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK 113
             ++     +   V++ + LT D+F+G   + L   L         P   K
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPL-YPLPTENPRMERPYTFK 116

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.0 bits (125), Expect = 6e-10
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCL----EYGSSKYRT----KTCTDGGKNPTFQEKFV 62
           L +T +     +        D YV        GS + +T    +       + T++E  V
Sbjct: 28  LFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQL-----HTTWEEGLV 79

Query: 63  LPL-IEGL--RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW-PLQTKT 114
           LPL  E L    L + +      +     G  R+ L    S     A W  L+T  
Sbjct: 80  LPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL-DGTSVPLGAAQWGELKTSG 134

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 51.9 bits (125), Expect = 6e-10
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 19/117 (16%)

Query: 11  LEITVVGCYNL--DDKEWISRQDPYV--CL---EYGSSKYRTKTCTDGGKNPTFQEKFVL 63
           L I V+   +L  +D    +  +PYV   L    + +SK +TK      +NPTF E  V 
Sbjct: 22  LFIMVMHIKDLVTEDG---ADPNPYVKTYLLPDTHKTSKRKTKISRKT-RNPTFNEMLVY 77

Query: 64  PLI--EGL--RELNVVVWNSHTLTPDEFIGSGRIQLHKA-LSQGFDDAAW-PLQTKT 114
                E L  REL + V ++ +L  + F+G   + L    LS+      W  L   T
Sbjct: 78  SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVK--WYQLTAAT 132

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 52.0 bits (125), Expect = 6e-10
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 26/121 (21%)

Query: 11  LEITVVGCYNL---DDKEWISRQDPYV--CL---EYGSSKYRT----KTCTDGGKNPTFQ 58
           L + V  C+ L   D+ +  S  +PYV   L   +    K +T     T      NP + 
Sbjct: 25  LVVHVKECHQLAYADEAKKRS--NPYVKTYLLPDKSRQGKRKTSIKRDTV-----NPLYD 77

Query: 59  EKFV--LPLIE-GLRELNVVVWNSHTLTPDEFIGSGRIQL-HKALSQGFDDAAW-PLQTK 113
           E     +P      R L   VW+      + F+G   IQ+    L +  D     PL  K
Sbjct: 78  ETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH--CLPLHGK 135

Query: 114 T 114
            
Sbjct: 136 I 136

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 11  LEITVVGCYNL---DDKEWISRQDPYVCL-----EYGSSKYRTKTCTDGGKNPTFQEKFV 62
           LE+ V+   +L      +      PYV +         +K +T+       +P +Q+  V
Sbjct: 32  LEVEVIRARSLTQKPGSKSTP--APYVKVYLLENGACIAKKKTRIARKT-LDPLYQQSLV 88

Query: 63  LPLIEGLRELNVVVWNSH-TLTPDEFIGSGRIQL-HKALSQGFDDAAW-PLQTKT 114
                  + L V+VW  +  +    F+G  +I L    LS       W  L   +
Sbjct: 89  FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG--WYKLFPPS 141

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKT--CTDGGKNPTFQEKFVL 63
           L + V    NL   +     DPYV L+        SK +TKT  C+    NP + E F  
Sbjct: 33  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS---LNPEWNETFRF 89

Query: 64  PLIEGL--RELNVVVWNSHTLTPDEFIGSGRIQLHK 97
            L E    R L+V +W+    + ++F+GS    + +
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV---CLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
           L + ++    L  K++    DP+V    L     K  TK       NP + E F+     
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-LNPHWNETFLFEGFP 86

Query: 68  ----GLRELNVVVWNSHTLTPDEFIGSGRIQL 95
                 R L + V +    + ++ IG   I L
Sbjct: 87  YEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CL---EYGSSKYRTKTCTDGGKNPTFQEKFVLPL 65
           L+ T++    L   +     DPYV   L      S+K RTKT  +  +NP + E      
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT-RNPVWNETLQYHG 89

Query: 66  IE----GLRELNVVVWNSHTLTPDEFIGSGRIQLHK 97
           I       + L + V +      +EFIG  R  L K
Sbjct: 90  ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 50.1 bits (120), Expect = 4e-09
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 29/127 (22%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--------------CLEYGSSKYRT----KTCTDGG 52
           L I ++   NL  ++     DP+V                     K RT    K+     
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSL---- 75

Query: 53  KNPTFQEKFVLPLIE----GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
            NP + +  +   I       + L V VW+    + ++F+G   I L  + S   +   W
Sbjct: 76  -NPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL-SSTSHLDNTPRW 133

Query: 109 -PLQTKT 114
            PL+ +T
Sbjct: 134 YPLKEQT 140

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 49.6 bits (119), Expect = 5e-09
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 11  LEITVVGCYNL---DDKEWISRQDPYV---CLEYGSSKYRTKTCTDGGKNPTFQEKFVLP 64
             + +     L   D++   S  DPY+    L     K +T+       +P F E F   
Sbjct: 24  FVVNIKEARGLPAMDEQSMTS--DPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFY 80

Query: 65  LIE----GLRELNVVVWNSHTLTPDEFIGSGRIQL 95
            I         L+  + +    + D+ IG   I L
Sbjct: 81  GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 49.3 bits (118), Expect = 5e-09
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 11 LEITVVGCYNL---DDKEWISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLP 64
            + V+    +      + +   DPYV L   +   S+ RT+   +   NP + E F   
Sbjct: 5  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NNDINPVWNETFEFI 63

Query: 65 LIE-GLRELNVVVWNSHTLTPDEFIGSGRIQLHK 97
          L       L + + +      DE +G+    +  
Sbjct: 64 LDPNQENVLEITLMD-ANYVMDETLGTATFTVSS 96

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 49.7 bits (119), Expect = 5e-09
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV---CLEYGSSKYRT----KTCTDGGKNPTFQEKFVL 63
           L + ++    L   +     DPYV    L     K+ T    KT      NP F E+F  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL-----NPVFNEQFTF 90

Query: 64  PLIEGL---RELNVVVWNSHTLTPDEFIGSGRIQL 95
            +       + L + V++    +  + IG  ++ +
Sbjct: 91  KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 49.3 bits (118), Expect = 8e-09
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV---CLEYGSSKYRT----KTCTDGGKNPTFQEKFVL 63
           L + ++    L   +     DPYV    L     K+ T    KT      NP F E+F  
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL-----NPVFNEQFTF 98

Query: 64  PLIEGL---RELNVVVWNSHTLTPDEFIGSGRIQL 95
            +       + L + V++    +  + IG  ++ +
Sbjct: 99  KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 133

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 50.6 bits (121), Expect = 9e-09
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVC---LEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
           L + ++    L   +     DPYV    L     K+ TK       NP F E+F   +  
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPY 79

Query: 68  ---GLRELNVVVWNSHTLTPDEFIGSGRIQL 95
                + L + V++    +  + IG  ++ +
Sbjct: 80  SELAGKTLVMAVYDFDRFSKHDIIGEFKVPM 110

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPL 65
           L + ++   NL   +     DPYV   L        K +T        NP + E F   +
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEV 210

Query: 66  -IEGLRE--LNVVVWNSHTLTPDEFIG 89
             E +++  + V V +   +  ++ IG
Sbjct: 211 PFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 23/117 (19%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CL---EYGSSKYRT----KTCTDGGKNPTFQEKF 61
           L +T++G  +L  +E    ++PYV           +K RT    KT       P + + F
Sbjct: 20  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL-----EPKWNQTF 74

Query: 62  VLPLIE----GLRELNVVVWNSHTLTPDE--FIGSGRIQLHKALSQGFDDAAW-PLQ 111
           +   +       R L + +W+   +  +E  F+G   I+L  AL    D+  W  LQ
Sbjct: 75  IYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD--DEPHWYKLQ 129

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV------CLEYGSSKYRTKTCTDGGKNPTFQEKFVLP 64
             I ++   NL        Q   +      C E  +  +RT+          F E F + 
Sbjct: 45  FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS-DTLVFNEVFWVS 103

Query: 65  L-IEGL--RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW 108
           +    L  + L V V  +     +E +G  +I L +    G     W
Sbjct: 104 MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRW 150

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVC---LEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
           L + ++   +L  K+     DPYV    L     K++TK       NP F E F   +  
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPL 80

Query: 68  ---GLRELNVVVWNSHTLTPDEFIGSGRIQ-LHKALSQGFDDAAW 108
                R+L+  V++    +  + IG   +  L +   Q  D   W
Sbjct: 81  AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPL 65
           L +T++   NL   +     DPYV   L        K +T        NPT+ E  V  +
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK-KNTLNPTYNEALVFDV 212

Query: 66  -IEGLRE--LNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFD 104
             E +    L++ V +   +  +E IG  R+    A   G +
Sbjct: 213 APESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE 254

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 11  LEITVVGCYNL--DDKEWISRQDPYV--CL---EYGSSKYRTKTCTDGGKNPTFQEKFVL 63
           L + ++    L           DPYV   L   +      +T+T  D  ++P F E F  
Sbjct: 29  LLLHIIEGKGLISKQP---GTCDPYVKISLIPEDSRLRHQKTQTVPDC-RDPAFHEHFFF 84

Query: 64  PLIEGL--RELNVVVWNSHTLT-PDEFIGSGRIQLHKALSQGFDDAAW-PLQTK 113
           P+ E    + L V VWN  + +     IG     +   L+   + + W  L  +
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 46.9 bits (111), Expect = 6e-08
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGL 69
           L + V        +E   + + YV L+      ++ T    G  P++++ F+  +    
Sbjct: 6  LLCVGVKKAKFDGAQE---KFNTYVTLKVQ--NVKSTTIAVRGSQPSWEQDFMFEINRLD 60

Query: 70 RELNVVVWNSHTLTPDEFIGSGRIQLHK 97
            L V VWN   +  D  +G+  I L  
Sbjct: 61 LGLTVEVWNKGLIW-DTMVGTVWIPLRT 87

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 23/119 (19%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCL-----EYGSSKYRT----KTCTDGGKNPTFQEKF 61
           L +T++G  +L  +E    ++PYV +         +K RT    KT       P + + F
Sbjct: 23  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL-----EPKWNQTF 77

Query: 62  VLPLIE----GLRELNVVVWNSHTLTPDE--FIGSGRIQLHKALSQGFDDAAW-PLQTK 113
           +   +       R L + +W+   +  +E  F+G   I+L  AL    D+  W  LQT 
Sbjct: 78  IYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD--DEPHWYKLQTH 134

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 46.6 bits (111), Expect = 7e-08
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 11  LEITVVGCYNL-------DDKEWISRQDPYVCLEY---GSSKYRTKTCTDGGKNPTFQEK 60
           L + V+   +L         ++ ++  +PYV +       +  +T       + P F+E+
Sbjct: 28  LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR-KTQKPVFEER 86

Query: 61  FVLPL-IEGL--RELNVVVWNSHTLTPDEFIGSGRIQLHKA-LSQGFDDAAW-PLQTKT 114
           +   +       R L + V +    +    IG   + L +  L +G     W  L    
Sbjct: 87  YTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKG--GHWWKALIPSG 143

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 24  KEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEG--LRELNVVVWNSHT 81
            ++ +  D Y+ + +G  ++RT    +   NP + +K     +       L V VW++  
Sbjct: 408 GDYTTATDAYLKVFFGGQEFRTGVVWN-NNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466

Query: 82  LTPDEFIGSGRIQLHK 97
              D+ +GS     H 
Sbjct: 467 GWDDDLLGSCDRSPHS 482

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CL---EYGSSKYRTKTCTDGGKNPTFQEKFV--L 63
           L + V  C NL         DPYV   L   +  S + +T        NP F + F   +
Sbjct: 26  LIVVVHACRNLIAFS-EDGSDPYVRMYLLPDKRRSGRRKTHVSK-KTLNPVFDQSFDFSV 83

Query: 64  PLIE-GLRELNVVVWNSHTLTPDE--FIGSGRIQL-HKALSQGFDDAAW-PLQTKTG 115
            L E   R L+V V NS      +   +G   + L  + L++G+    W  L   +G
Sbjct: 84  SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ--WYDLTEDSG 138

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPL 65
           L + ++   NL   +     DPYV   L        K +T        NP + E F   +
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEV 85

Query: 66  -IEGLRE--LNVVVWNSHTLTPDEFIGS 90
             E +++  + V V +   +  ++ IG 
Sbjct: 86  PFEQIQKVQVVVTVLDYDKIGKNDAIGK 113

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 13/100 (13%)

Query: 5  GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS--KYRTKTCTDGGK---NPTFQE 59
          G + + + +TV+   NL  K++    DP+  +    S   + T T     K   +P + +
Sbjct: 1  GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTV----KNTLDPKWNQ 56

Query: 60 KFVLPLIEGLRELNVVVWNSHTLTPDE---FIGSGRIQLH 96
           + L + +    + + VWN   +   +   F+G  R+  +
Sbjct: 57 HYDLYVGKT-DSITISVWNHKKIHKKQGAGFLGCVRLLSN 95

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 11  LEITVVGCYNLDDKEW---ISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLP 64
             + V+    +    +   +   DPYV L       S+ RT+   +   NP + E F   
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFI 78

Query: 65  LIEGL-RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114
           L       L + + +++ +  DE +G+    +         +  +     T
Sbjct: 79  LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVT 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPL 65
           L + ++ C +L   +     DP+V   L+      +K++T+       NP F E+F   +
Sbjct: 39  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFYDI 97

Query: 66  -IEGL--RELNVVVWNSHTLTPDEFIGSGRIQLH 96
               L  + L++ VW+      +++IG  ++ + 
Sbjct: 98  KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 10  PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGL 69
            L + V        +E   + + YV L+       + T    G  P++++ F+  +    
Sbjct: 15  LLCVGVKKAKFDGAQE---KFNTYVTLKVQ--NVESTTIAVRGSQPSWEQDFMFEINRLD 69

Query: 70  RELNVVVWNSHTLTPDEFIGSGRIQLHKALS 100
             L V VWN   +  D  +G+  I L     
Sbjct: 70  LGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQ 99

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYGS---SKYRTKT--CTDGGKNPTFQEKFV- 62
           + + ++   NL   +     DPYV   L Y      K +T T        NP F E F  
Sbjct: 18  IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN---LNPIFNESFAF 74

Query: 63  -LPLIEGLRE--LNVVVWNSHTLTPDEFIGS 90
            +P  E LRE  + + V +   L+ ++ IG 
Sbjct: 75  DIPT-EKLRETTIIITVMDKDKLSRNDVIGK 104

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV--CLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPL 65
           L + V+   +L   +     DPYV   L +     SK +T        N  F E FV  +
Sbjct: 32  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDI 90

Query: 66  -IEGLRE--LNVVVWNSHTLTPDEFIGS 90
             E L E  +  +V +S   + +E IG 
Sbjct: 91  PCESLEEISVEFLVLDSERGSRNEVIGR 118

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 42.6 bits (99), Expect = 6e-06
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 11  LEITVVGCYNLD--DKEWISRQDPYVCLE-YG----SSKYRTKTCTDGGKNPTFQEKFVL 63
           L + ++    L   +K   S  DP V +E +G    +   +T   T+ G NP +  +F  
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558

Query: 64  PLI-EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
            +    L  +  +V +  + + ++FIG   I    +L QG+      L +K G
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW-NSLKQGY--RHVHLLSKNG 608

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 8   GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
            + L + +     L  +      D    + +    + ++   +      F E F  P+  
Sbjct: 20  HMALIVHLKTVSELRGR-----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVAS 74

Query: 68  GLRE---LNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
            +     L + ++N   +  ++ IG+ R+ L K + +   + +  L     
Sbjct: 75  SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN 125

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEY-GSSKYRTKT--CTDGGKNPTFQEKFVLPLIE 67
           L++ ++       +E   ++  Y  L        RT +   +  G    + E F    + 
Sbjct: 13  LKLWIIEA-----RELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  GLRELNVVVWNSHTLTP----DEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
            +R L + ++             ++G   + +     + F +  +P+   TG
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.93
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.92
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.92
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.91
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.91
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.91
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.91
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.91
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.91
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.91
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.91
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.9
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.9
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.9
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.9
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.9
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.9
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.9
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.9
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.9
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.9
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.89
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.89
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.89
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.89
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.89
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.88
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.88
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.88
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.87
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.87
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.87
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.86
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.85
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.85
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.83
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.83
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.82
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.81
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.79
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.79
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.78
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.78
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.73
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.71
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.67
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.58
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.55
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.55
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.19
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.13
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.64
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.4
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.69
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	94.92
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	92.01
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	91.27

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.93  E-value=3.8e-24  Score=127.80  Aligned_cols=107  Identities=27%  Similarity=0.402  Sum_probs=93.1

Q ss_pred             ccccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCC-
Q 048139            4 SGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTL-   82 (115)
Q Consensus         4 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~-   82 (115)
                      ++...+.|.|+|++|++|+..+..+.+||||.+.++...++|+++.+ +.||.|+|.|.|.+......|.|+|||++.. 
T Consensus        12 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           12 TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG-NLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             ---CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCS-CSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             ccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCC-CCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            45567999999999999999888899999999999999999999887 9999999999999966668899999999875 


Q ss_pred             ----------CCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           83 ----------TPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        83 ----------~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                                +++++||++.+++.++  .+....|++|..+
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~  129 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKR  129 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCS
T ss_pred             cccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccC
Confidence                      7899999999999998  3456778898754

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=5.8e-24  Score=125.89  Aligned_cols=107  Identities=19%  Similarity=0.292  Sum_probs=93.9

Q ss_pred             cccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEeCC
Q 048139            5 GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWNSH   80 (115)
Q Consensus         5 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~~~   80 (115)
                      +-..+.|.|+|++|++|+..+. +.+||||++.+...+++|+++++ +.||.|||.|.|.+..    ....|.|+|||++
T Consensus         3 s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d   80 (140)
T 2dmh_A            3 SGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDN-ELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE   80 (140)
T ss_dssp             SCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCS-CSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred             CCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecC-CCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence            3467899999999999998888 89999999999988999999886 8999999999999843    3578999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEe---cccC
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWP---LQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~---L~~~  113 (115)
                      ..+++++||++.+++.++..++....|+.   |.+.
T Consensus        81 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~  116 (140)
T 2dmh_A           81 TIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE  116 (140)
T ss_dssp             CSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT
T ss_pred             CCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC
Confidence            88899999999999999987777677776   6543

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.92  E-value=7e-24  Score=127.70  Aligned_cols=105  Identities=19%  Similarity=0.301  Sum_probs=90.1

Q ss_pred             ccCceEEEEEeeecCCCCCCC----------CCCCCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCceEEE
Q 048139            6 IQGLPLEITVVGCYNLDDKEW----------ISRQDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNV   74 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~----------~~~~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~   74 (115)
                      ...+.|+|+|++|++|+..+.          .+.+||||++.++... .+|+++.+ +.||.|||+|.|.+.. ...|.|
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~-~~~L~~  103 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD-GGHLEL  103 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE-ECEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC-CCEEEE
Confidence            566899999999999997763          2568999999998765 68998776 9999999999999864 368999


Q ss_pred             EEEeCCCCCCCceeEEEEEEcchhhcc----CeeeeEEeccc
Q 048139           75 VVWNSHTLTPDEFIGSGRIQLHKALSQ----GFDDAAWPLQT  112 (115)
Q Consensus        75 ~v~~~~~~~~~~~lG~~~v~l~~l~~~----~~~~~~~~L~~  112 (115)
                      +|||++..+++++||++.+++.++...    +....|++|.+
T Consensus       104 ~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A          104 AVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS
T ss_pred             EEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC
Confidence            999999888999999999999999865    56778889864

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.91  E-value=1.5e-23  Score=123.41  Aligned_cols=106  Identities=26%  Similarity=0.275  Sum_probs=91.4

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE-----CCeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~-----~~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+. +..+.+||||++.+     ...+++|+++++ +.||.|||+|.|. +..   ....|.|+||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            56899999999999986 66788999999998     356889999887 9999999999999 642   3478999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      |++..+++++||++.+++.++..+.....|++|.++.
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence            9998888999999999999998877778899998753

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.91  E-value=2.4e-24  Score=126.64  Aligned_cols=105  Identities=23%  Similarity=0.394  Sum_probs=93.4

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+....++|+++.+ +.||.|+|+|.|.+......|.|+|||++..++++
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~   89 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-NLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   89 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSS-CSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecC-CCCCccccEEEEEecCCCCEEEEEEEECCCCCCCC
Confidence            56899999999999999888899999999999999999999887 99999999999999766678999999999888899


Q ss_pred             eeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           87 FIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +||++.+++.++..+.  ..|++|.+++
T Consensus        90 ~lG~~~i~l~~l~~~~--~~w~~L~~~~  115 (133)
T 2ep6_A           90 FLGKVAIPLLSIRDGQ--PNCYVLKNKD  115 (133)
T ss_dssp             ECCBCEEEGGGCCSSC--CEECCCBCSC
T ss_pred             eeEEEEEEHHHccCCC--ceEEEeecCC
Confidence            9999999999986533  4677887653

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.91  E-value=8.3e-24  Score=124.65  Aligned_cols=106  Identities=24%  Similarity=0.463  Sum_probs=93.3

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCC
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPD   85 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~   85 (115)
                      ...+.|.|+|++|++|+..+..+.+||||++.+....++|+++.+++.||.|+|+|.|.+......|.|+|||++..+++
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d   86 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED   86 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTT
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCC
Confidence            46689999999999999988888999999999998889999987349999999999999977678999999999988899


Q ss_pred             ceeEEEEEEcchhhccC-eeeeEEecc
Q 048139           86 EFIGSGRIQLHKALSQG-FDDAAWPLQ  111 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~~~-~~~~~~~L~  111 (115)
                      ++||++.+++.++...+ ....||+|.
T Consensus        87 ~~lG~~~i~l~~l~~~~~~~~~w~~L~  113 (136)
T 1wfj_A           87 DAVGEATIPLEPVFVEGSIPPTAYNVV  113 (136)
T ss_dssp             CCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred             ceEEEEEEEHHHhccCCCCCcEEEEee
Confidence            99999999999995544 355677875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.91  E-value=1.2e-23  Score=124.93  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=92.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE---CCeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY---GSSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~---~~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+   ....++|+++++ +.||.|+|+|.|.+..   ....|.|+|||++
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            56789999999999998888888999999998   456899999887 9999999999999842   3478999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      ..+++++||++.++|.++..+.....|++|.+
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            88899999999999999988777788889875

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.91  E-value=2.5e-23  Score=124.80  Aligned_cols=107  Identities=21%  Similarity=0.326  Sum_probs=87.1

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeC
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNS   79 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~   79 (115)
                      ...+.|.|+|++|++|+..+..+.+||||++.+..      ..++|+++.+ +.||.|||.|.|.+......|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQQHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecCCCCEEEEEEEEC
Confidence            45679999999999999888888999999999862      5789999887 9999999999999976667899999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCee------eeEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFD------DAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~------~~~~~L~~~  113 (115)
                      +..+++++||++.+++.++......      ..|+.|.++
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~  135 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR  135 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence            9888999999999999999775532      478898765

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.91  E-value=4.2e-23  Score=123.81  Aligned_cols=106  Identities=21%  Similarity=0.294  Sum_probs=93.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   ...++|+++++ +.||.|||.|.|.+..   ....|.|+|||++
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            467899999999999998888899999999983   56889999887 9999999999999843   3578999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ..+++++||++.+++.++..+.....|++|.+.
T Consensus       119 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            888999999999999999777777888899764

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=5.5e-23  Score=121.87  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=93.4

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC----CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE----GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~----~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   ...++|+++.+ +.||.|||.|.|.+.+    ....|.|+|||+
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            568899999999999998888899999999984   46889999876 9999999999998522    357899999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +..+++++||++.+++.++..+.....|++|.++.
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            98889999999999999998877778888987654

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.90  E-value=5.5e-23  Score=126.01  Aligned_cols=107  Identities=20%  Similarity=0.355  Sum_probs=85.9

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeC
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNS   79 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~   79 (115)
                      -..+.|.|+|++|++|+..+..+.+||||++.+..      ..++|+++++ +.||.|+|.|.|.+......|.|+|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            45689999999999999988889999999999864      5789999886 9999999999999977667999999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCee-e-----eEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFD-D-----AAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~-~-----~~~~L~~~  113 (115)
                      +..+++++||++.++|..+...+.. .     .||.|..+
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~  123 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR  123 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCS
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcccc
Confidence            9888999999999999999876543 1     68888764

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=125.72  Aligned_cols=107  Identities=26%  Similarity=0.356  Sum_probs=92.5

Q ss_pred             cCceEEEEEeeecCCCCCC-CCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+ ..+.+||||++.+.     ..+++|+++++ +.||.|||+|.|.+...   ...|.|+||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            4678999999999999877 57889999999986     34889999887 99999999999998542   457999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      |++..+++++||++.+++.++..+.....|++|.++.
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             ECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            9998888999999999999998877778899998875

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.90  E-value=3.1e-23  Score=120.71  Aligned_cols=103  Identities=17%  Similarity=0.310  Sum_probs=89.8

Q ss_pred             CceEEEEEeeecCCCCC---CCCCCCCcEEEEEECC---eEEEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeCC
Q 048139            8 GLPLEITVVGCYNLDDK---EWISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNSH   80 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~---~~~~~~~p~~~~~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~~   80 (115)
                      .+.|.|+|++|++|+..   +..+.+||||++.+..   ..++|+++++ +.||.|||+|.|.+. +....|.|+|||++
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            57899999999999873   5568899999999974   7899999887 999999999999994 45678999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      .. ++++||++.+++.++..+.....|++|.+
T Consensus        81 ~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T 1rlw_A           81 YV-MDETLGTATFTVSSMKVGEKKEVPFIFNQ  111 (126)
T ss_dssp             SS-CCEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred             CC-CCceeEEEEEEHHHccCCCcEEEEEEcCC
Confidence            76 58899999999999987777778888865

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.90  E-value=2.3e-23  Score=122.87  Aligned_cols=105  Identities=24%  Similarity=0.456  Sum_probs=87.9

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCC-----------CCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCceEE
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISR-----------QDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRELN   73 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~-----------~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~   73 (115)
                      ...+.|.|+|++|++|+..+..++           +||||++.+.... .+|++..+ +.||.|||+|.|.+... ..|.
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~-~~L~   80 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG-RKIE   80 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE-CEEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC-CcCCccCCEEEEEecCC-CEEE
Confidence            456899999999999998765443           8999999998654 57887776 99999999999998654 7899


Q ss_pred             EEEEeCCCCCCCceeEEEEEEcchhhccC--eeeeEEeccc
Q 048139           74 VVVWNSHTLTPDEFIGSGRIQLHKALSQG--FDDAAWPLQT  112 (115)
Q Consensus        74 ~~v~~~~~~~~~~~lG~~~v~l~~l~~~~--~~~~~~~L~~  112 (115)
                      |+|||++..++|++||++.+++.++...+  ....|+.|.+
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~  121 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC
Confidence            99999998889999999999999998753  3366778754

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.90  E-value=8.8e-23  Score=119.77  Aligned_cols=106  Identities=17%  Similarity=0.277  Sum_probs=88.8

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC--eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS--SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT   83 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~--~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~   83 (115)
                      .....|+|+|++|++|+..+..+.+||||++.+..  ..++|+++.+ +.||.|+|.|.|.+.... .|.|+|||++..+
T Consensus         2 ~~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~   79 (132)
T 3pyc_A            2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKTD-SITISVWNHKKIH   79 (132)
T ss_dssp             CSEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSS-CSSCEEEEEEEEEEETTC-CEEEEEEEGGGTT
T ss_pred             CCeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCC-CCCCCccCEEEEEeCCCC-EEEEEEEECCCCC
Confidence            34568999999999999998889999999999974  7899999876 999999999999986543 5999999998776


Q ss_pred             C---CceeEEEEEEcchhhc-cCeeeeEEecccC
Q 048139           84 P---DEFIGSGRIQLHKALS-QGFDDAAWPLQTK  113 (115)
Q Consensus        84 ~---~~~lG~~~v~l~~l~~-~~~~~~~~~L~~~  113 (115)
                      +   +++||++.+++.++.. .....+++.|..+
T Consensus        80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~  113 (132)
T 3pyc_A           80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL  113 (132)
T ss_dssp             SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS
T ss_pred             CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec
Confidence            5   7899999999999844 3334566777655

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=9e-23  Score=121.99  Aligned_cols=105  Identities=28%  Similarity=0.324  Sum_probs=91.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC--CceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--LRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.     ...++|+++++ +.||.|+|+|.|.+...  ...|.|+|||+
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  107 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEIWDW  107 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence            357899999999999998888899999999986     46889999887 99999999999998542  46899999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +..+++++||++.+++.++... ....||+|.+.
T Consensus       108 d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~  140 (149)
T 1a25_A          108 DLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  140 (149)
T ss_dssp             CSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             CCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence            9888899999999999999775 46778898763

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.90  E-value=4.2e-23  Score=126.06  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=92.0

Q ss_pred             cCceEEEEEeeecCCCCCCC-CCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEE-eC
Q 048139            7 QGLPLEITVVGCYNLDDKEW-ISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVW-NS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~-~~   79 (115)
                      ..+.|.|+|++|++|+..+. .+.+||||++.+..     ..++|+++++ +.||.|||+|.|.+......|.|+|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESPQGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence            46789999999999998875 68899999998852     3788999887 99999999999999766789999999 99


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +..+++++||++.+++.++..+....+|++|.+.
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            9888999999999999999876777889999765

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.90  E-value=1.1e-22  Score=122.19  Aligned_cols=107  Identities=23%  Similarity=0.347  Sum_probs=90.4

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEee--cCCCceEEEEEEe
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPL--IEGLRELNVVVWN   78 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~--~~~~~~L~~~v~~   78 (115)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.     ...++|+++++ +.||.|||+|.|.+  ......|.|+|||
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d  101 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQEEDDQKRLLVTVWN  101 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECCGGGTTSEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecccHHhCCEEEEEEEe
Confidence            35688999999999999887 5889999999983     35789999887 99999999999998  3334569999999


Q ss_pred             CCCCCC-CceeEEEEEEcchhhc-cCeeeeEEecccCC
Q 048139           79 SHTLTP-DEFIGSGRIQLHKALS-QGFDDAAWPLQTKT  114 (115)
Q Consensus        79 ~~~~~~-~~~lG~~~v~l~~l~~-~~~~~~~~~L~~~~  114 (115)
                      ++..++ +++||++.+++.++.. ......|+.|.++.
T Consensus       102 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A          102 RASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             CCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred             CCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence            998776 8999999999999985 55677888998754

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=2.7e-23  Score=125.13  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=90.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|.|++|++|+..+..+.+|||+++.+..      .+++|+++++ +.||.|||+|.|.+..   ....|.|+||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            4678999999999999998889999999999854      2799999987 9999999999999853   2468999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhc-cCeeeeEEeccc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALS-QGFDDAAWPLQT  112 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~-~~~~~~~~~L~~  112 (115)
                      |++..+++++||++.+++.++.. ......||.|++
T Consensus       120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            99988899999999999999954 455677888864

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=1e-22  Score=118.93  Aligned_cols=103  Identities=27%  Similarity=0.463  Sum_probs=85.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE-----CCeEEEEEEecCCCCCCeeceeEEEee-cC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPL-IE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~-----~~~~~~t~~~~~~~~~P~w~e~~~~~~-~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+     ....++|+++++ +.||.|||+|.|.+ ..   ....|.|+||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            45789999999999999888888999999998     356899999887 99999999999995 32   3478999999


Q ss_pred             eCCCCCC--CceeEEEEEEcchhhccCeeeeEEecc
Q 048139           78 NSHTLTP--DEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        78 ~~~~~~~--~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      |++..++  +++||++.+++.++...+ ..+||+|.
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9998876  999999999999987765 67788874

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.89  E-value=1.8e-22  Score=119.28  Aligned_cols=107  Identities=15%  Similarity=0.171  Sum_probs=89.7

Q ss_pred             cCceEEEEEeeecCCCCCCCC-CCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWI-SRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+.. +.+||||++.+.   ...++|+++++ +.||.|||+|.|. +..   ....|.|+|||
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            457899999999999988875 789999999985   36899999886 9999999999996 643   34689999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhccCeeeeE-EecccCC
Q 048139           79 SHTLTPDEFIGSGRIQLHKALSQGFDDAA-WPLQTKT  114 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~~~~~~~~-~~L~~~~  114 (115)
                      ++..+++++||++.+++.++........| ++|..+.
T Consensus        99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A           99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            99888999999999999999775444444 4887764

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.89  E-value=1.4e-23  Score=124.54  Aligned_cols=107  Identities=22%  Similarity=0.320  Sum_probs=92.6

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe--------------EEEEEEecCCCCCCeeceeEEEe-ecC---CC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS--------------KYRTKTCTDGGKNPTFQEKFVLP-LIE---GL   69 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~--------------~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~   69 (115)
                      .+.|.|+|++|++|+..+..+.+||||++.+...              .++|+++++ +.||.|||.|.|. +..   ..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHccC
Confidence            5789999999999999988899999999999752              477888876 9999999999997 532   35


Q ss_pred             ceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           70 RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        70 ~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      ..|.|+|||++..+++++||++.+++.++........|++|.++.+
T Consensus        96 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             CEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccCC
Confidence            6899999999988889999999999999987667788999988753

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.89  E-value=9e-23  Score=120.76  Aligned_cols=106  Identities=27%  Similarity=0.460  Sum_probs=91.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE-----CCeEEEEEEecCCCCCCeeceeEEEee-cC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPL-IE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~-----~~~~~~t~~~~~~~~~P~w~e~~~~~~-~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+     ....++|+++++ +.||.|||.|.|.+ ..   ....|.|+||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            35789999999999999888889999999998     356889999887 99999999999995 32   2478999999


Q ss_pred             eCCCCCC--CceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           78 NSHTLTP--DEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        78 ~~~~~~~--~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      |++..++  +++||++.+++.++...+ ...||+|.+++
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~  135 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD  135 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence            9998876  899999999999987655 67888998764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=1.9e-22  Score=119.64  Aligned_cols=106  Identities=24%  Similarity=0.229  Sum_probs=89.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+ +||||++.+.     ...++|+++++ +.||.|||+|.|.+..   ....|.|+|||
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            3678999999999999988888 9999999984     26789999887 9999999999999843   23589999999


Q ss_pred             CCCCCC--CceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           79 SHTLTP--DEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        79 ~~~~~~--~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      ++..+.  +++||++.+++.++........|+.|.+..
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            997653  579999999999987766677888888764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.89  E-value=2.5e-22  Score=119.11  Aligned_cols=105  Identities=26%  Similarity=0.362  Sum_probs=89.3

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEe-ecCC---CceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLP-LIEG---LRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~-~~~~---~~~L~~~v~   77 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     ..++|+++++ +.||.|+|.|.|. +...   ...|.|+||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            4678999999999999988888999999999864     6899999887 9999999999998 5322   368999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      |++..+++++||++.+++.++..++....|++|..
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99988889999999999999987665555557754

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=7.6e-22  Score=120.68  Aligned_cols=105  Identities=19%  Similarity=0.356  Sum_probs=87.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      ..+.|.|+|++|++|+.....+.+||||++.+....++|+++++ +.||.|||+|.|.+.+ ...|.|+|||++..++++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~-tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSS-CSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCC-CCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            56789999999999985444555999999999999999999886 9999999999999964 678999999999888999


Q ss_pred             eeEEEEEEcchhhccC--ee---eeEEecccC
Q 048139           87 FIGSGRIQLHKALSQG--FD---DAAWPLQTK  113 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~--~~---~~~~~L~~~  113 (115)
                      +||++.+++.++....  ..   ..|+.|..+
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~  143 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  143 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence            9999999999997632  11   346677654

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=3.1e-22  Score=119.37  Aligned_cols=106  Identities=16%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             cCceEEEEEeeecCCCCC-CC------CCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEE
Q 048139            7 QGLPLEITVVGCYNLDDK-EW------ISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELN   73 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~-~~------~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~   73 (115)
                      ..+.|.|+|++|++|+.. +.      .+.+||||++.+.   ...++|+++++ +.||.|||+|.|.+..   ....|.
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHhccCEEE
Confidence            467899999999999873 32      3578999999985   45789999886 9999999999999853   235899


Q ss_pred             EEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           74 VVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        74 ~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      |+|||++..+++++||++.+++.++........|+.|.++
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999888899999999999999766555556687765

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=1.1e-21  Score=116.03  Aligned_cols=104  Identities=20%  Similarity=0.131  Sum_probs=87.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC----CeEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++   .+..+.+||||++.+.    ...++|+++++ +.||.|||+|.|.+...   ...|.|+|||+
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            46789999999984   4567889999999983    23678999887 99999999999998542   46899999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +..+++++||++.++|.++........|+.|.+..
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            98889999999999999997656667888987653

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.87  E-value=3.2e-21  Score=113.64  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=79.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+..     ..++|+++.+ +.||.|||+|.|.+...   ...|.|+|||
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSS-CSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccC-CCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            4688999999999999988888999999999863     4788888887 89999999999998543   3679999999


Q ss_pred             CCCCCCCceeEEEEEEcchh
Q 048139           79 SHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l   98 (115)
                      ++..+++++||++.+++.++
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSC
T ss_pred             CCCCCCCcEEEEEEEccccC
Confidence            99888999999999999854

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.87  E-value=5.1e-21  Score=116.19  Aligned_cols=107  Identities=21%  Similarity=0.333  Sum_probs=88.0

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     ..++|+++++ +.||.|||.|.|.+..   ....|.|+|||
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            4678999999999999988888999999999864     6889999887 9999999999999853   24689999999


Q ss_pred             CCCCCCCceeEEEEEEcchhh----------c--cCeeeeEEecccCC
Q 048139           79 SHTLTPDEFIGSGRIQLHKAL----------S--QGFDDAAWPLQTKT  114 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~----------~--~~~~~~~~~L~~~~  114 (115)
                      ++..+++++||++.+++.++.          .  +.....|..|.+++
T Consensus       114 ~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~  161 (166)
T 2cm5_A          114 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNEN  161 (166)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC--
T ss_pred             CCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCcc
Confidence            998889999999999998742          1  23345566776643

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.87  E-value=6.5e-21  Score=114.98  Aligned_cols=106  Identities=19%  Similarity=0.209  Sum_probs=88.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     ..++|+++.+ +.||.|+|+|.|.+...   ...|.|+|||
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            4678999999999999988888999999999852     4788888887 99999999999998432   4579999999


Q ss_pred             CCCCCCCceeEEEEEEcch----------hhc--cCeeeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHK----------ALS--QGFDDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~----------l~~--~~~~~~~~~L~~~  113 (115)
                      ++..+++++||++.+++..          +..  .....+|+.|.+.
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            9988899999999999984          332  2345678888754

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.86  E-value=1.9e-20  Score=112.23  Aligned_cols=90  Identities=21%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--Ce---EEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--SS---KYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~~---~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.  ..   +++|+++++ +.||.|||+|.|.+...   ...|.|+|||
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            457899999999999988888889999999983  32   678999887 99999999999998543   3679999999


Q ss_pred             CCCCCCCceeEEEEEEcch
Q 048139           79 SHTLTPDEFIGSGRIQLHK   97 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~   97 (115)
                      ++..+++++||++.+++..
T Consensus       107 ~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCCcEEEEEEECCCC
Confidence            9988899999999999988

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.85  E-value=6.7e-21  Score=111.76  Aligned_cols=90  Identities=21%  Similarity=0.259  Sum_probs=74.0

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      ..+.|.|+|++|++++.   .+.+||||++.  ....+|+++.+++.||.|||+|.|.+......|.|+|||++ .++|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCC
Confidence            34789999999998852   56789999998  23345555443489999999999999766678999999999 88899


Q ss_pred             eeEEEEEEcchhhccC
Q 048139           87 FIGSGRIQLHKALSQG  102 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~  102 (115)
                      +||++.+++.++...+
T Consensus        77 ~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           77 MVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             EEEEEEEEGGGSCBCS
T ss_pred             eEEEEEEEHHHhhhcC
Confidence            9999999999987654

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=3.8e-20  Score=120.58  Aligned_cols=106  Identities=20%  Similarity=0.275  Sum_probs=92.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   ...++|+++.+ +.||.|||+|.|.+..   ....|.|+|||++
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            568999999999999998888899999999985   35788999887 8999999999999843   3478999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      ..+++++||++.+++.++..+.....|++|.+.
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~  128 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  128 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeecc
Confidence            888899999999999999877777788898764

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.83  E-value=8e-20  Score=127.19  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=92.3

Q ss_pred             cccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCCCCC
Q 048139            5 GIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSHTLT   83 (115)
Q Consensus         5 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~~~~   83 (115)
                      ....+.|.|+|++|++|+..+..|.+||||++.++...++|+++.+ +.||.|+|+|.|.+.. ....|.|+|||++..+
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~-t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~  461 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQD-TLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFS  461 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSS-CSSCEEEEEEEEEESCTTTCEEEEEEEECCSSS
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCC-CCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence            3456789999999999999988899999999999999999999887 9999999999999854 4467999999999988


Q ss_pred             CCceeEEEEEEcchhhccCe----eeeEEecccC
Q 048139           84 PDEFIGSGRIQLHKALSQGF----DDAAWPLQTK  113 (115)
Q Consensus        84 ~~~~lG~~~v~l~~l~~~~~----~~~~~~L~~~  113 (115)
                      ++++||++.+++.++..++.    ...|++|.+.
T Consensus       462 ~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~  495 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV  495 (510)
T ss_dssp             SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS
T ss_pred             CCCceEEEEEEHHHhccccCCCCceeeeecCCCC
Confidence            99999999999999976433    4566777654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.83  E-value=8.9e-20  Score=110.90  Aligned_cols=89  Identities=21%  Similarity=0.244  Sum_probs=74.0

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      .+.|.|+|++|++++   ..+..||||++.  ...++|+++..++.||.|||+|.|.+......|.|+|||++ .++|++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            458999999999874   256789999998  33456666543489999999999999766678999999999 888999


Q ss_pred             eEEEEEEcchhhccC
Q 048139           88 IGSGRIQLHKALSQG  102 (115)
Q Consensus        88 lG~~~v~l~~l~~~~  102 (115)
                      ||++.++|.++...+
T Consensus        87 iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           87 VGTVWIPLRTIRQSN  101 (167)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhcccC
Confidence            999999999987654

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.82  E-value=2.5e-19  Score=105.02  Aligned_cols=100  Identities=16%  Similarity=0.285  Sum_probs=87.2

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeec---CCCceEEEEEEeCCCCCCCc
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLI---EGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~---~~~~~L~~~v~~~~~~~~~~   86 (115)
                      .|+|.|.+|.+|+     ++.|||+++.+.+.+++|+++.+++.||.|||.|.|.+.   .....|.+.|+|++.+++++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr   96 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK   96 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence            4889999999998     578999999999999999999744899999999999983   24678999999999999999


Q ss_pred             eeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           87 FIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +||++.++|.++...+.....-.|.+.+
T Consensus        97 lIG~~~i~Lq~lv~~~~l~l~~~LvD~n  124 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRVEVSDTLIDDN  124 (144)
T ss_dssp             EEEEEEEESHHHHHHSEEEEEEEEECTT
T ss_pred             EEEEEEEEhHHhccCCeEEEeecccCCC
Confidence            9999999999999887666555666654

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.81  E-value=5.6e-19  Score=123.59  Aligned_cols=98  Identities=21%  Similarity=0.370  Sum_probs=85.2

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeec--CCCceEEEEEEeCCCCCCC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLI--EGLRELNVVVWNSHTLTPD   85 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~--~~~~~L~~~v~~~~~~~~~   85 (115)
                      .+.|.|+|++|++|+. +..+.+|||+++.+.+..++|+++++ +.||.|||.|.|.+.  .....|.|+|||++..++|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~-tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWN-NNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCS-CSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecC-CCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            4689999999999998 88899999999999988999999987 999999999999862  3567899999999988899


Q ss_pred             ceeEEEEEEcchhhccCeeeeEEecc
Q 048139           86 EFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        86 ~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      ++||++.++|..    +....|+.|.
T Consensus       471 D~LG~~~~~L~~----g~~~~~~~l~  492 (540)
T 3nsj_A          471 DLLGSCDRSPHS----GFHEVTCELN  492 (540)
T ss_dssp             EEEEEEEECCCS----EEEEEEEECS
T ss_pred             CEEEEEEEEeeC----CcEEEEEEcC
Confidence            999999999873    4455566664

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.79  E-value=8.6e-19  Score=114.97  Aligned_cols=106  Identities=20%  Similarity=0.268  Sum_probs=86.9

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE---CCeEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY---GSSKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~---~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+   +...++|+++++ +.||.|+|+|.|.+...   ...|.|+|||++
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            46789999999999999888889999999998   467889999887 99999999999998432   358999999999


Q ss_pred             CCCCCceeEEEEEE-cchhhc-cCeeeeEEecccC
Q 048139           81 TLTPDEFIGSGRIQ-LHKALS-QGFDDAAWPLQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~-l~~l~~-~~~~~~~~~L~~~  113 (115)
                      ..+++++||++.++ +.++.. ......|+.|...
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~  131 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  131 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccc
Confidence            88899999999996 555544 2234556777543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=4e-18  Score=111.03  Aligned_cols=106  Identities=19%  Similarity=0.213  Sum_probs=86.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|.|++|++|+..+..+.+|||+++.+.  +   .+++|+++++ +.||.|||.|.|.+...   ...|.|+|||
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  226 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLD  226 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence            356899999999999988888899999999984  2   4678888876 99999999999998543   3479999999


Q ss_pred             CCCCCCCceeEEEEEEcchh----------h-c-cCeeeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHKA----------L-S-QGFDDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l----------~-~-~~~~~~~~~L~~~  113 (115)
                      ++..+++++||++.+++..+          . . .....+|+.|.+.
T Consensus       227 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          227 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99888999999999999753          1 2 2345678888764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.78  E-value=6.3e-19  Score=126.79  Aligned_cols=104  Identities=17%  Similarity=0.299  Sum_probs=91.5

Q ss_pred             cCceEEEEEeeecCCCC---CCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDD---KEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~---~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+.   .+..+.+||||++.+.   ..+++|+++++ +.||.|||+|.|.+.. ....|.|+|||+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            46799999999999988   6777889999999997   46899999887 9999999999999954 567899999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      +..+ +++||++.+++.++..+.....|+.|.+
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            9888 9999999999999977666777888864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.78  E-value=5.1e-18  Score=120.64  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=89.5

Q ss_pred             ccCceEEEEEeeecCCCCCCC--CCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEE
Q 048139            6 IQGLPLEITVVGCYNLDDKEW--ISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVW   77 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~   77 (115)
                      ...+.|.|+|++|++|+..+.  .+..||||++.+.+     .+++|+++.+.+.||.|||+|.|.+.. ....|.|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            367899999999999998763  57899999999843     688999988734999999999999853 3468999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |++..+++++||++.+++..+..+   ..+++|.+..|
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g  608 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNG  608 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTS
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCc
Confidence            999888999999999999998653   34778877654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.73  E-value=1.6e-18  Score=113.70  Aligned_cols=92  Identities=24%  Similarity=0.283  Sum_probs=80.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|.|++|++|+..+..+..|||+++.+.     ..+++|+++++ +.||.|||.|.|.+...   ...|.|+|||
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  228 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVD  228 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence            357899999999999988888889999999985     25788998886 99999999999998543   3579999999


Q ss_pred             CCCCCCCceeEEEEEEcchhh
Q 048139           79 SHTLTPDEFIGSGRIQLHKAL   99 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~   99 (115)
                      ++..+++++||.+.+++..+.
T Consensus       229 ~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          229 YDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             CCSSSCCEEEEECCCSSCTTC
T ss_pred             CCCCCCCceEEEEEECCccCC
Confidence            999889999999999998763

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.71  E-value=6.8e-17  Score=115.90  Aligned_cols=105  Identities=29%  Similarity=0.393  Sum_probs=91.3

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE-----CCeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~-----~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~   79 (115)
                      ..+.|.|++.+|++|...+..+..|||+++.+     ...+++|+++++ +.||.|||.|.|.+..  ....|.++|||+
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~~~~~L~v~v~d~  248 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKESDKDRRLSVEIWDW  248 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSS-CSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCcccccccccccccc-ccCCCccceeeeecccCCccceeeeEEeec
Confidence            45789999999999999999999999999998     345789999887 9999999999999843  345799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +..+++++||.+.+++.++...+. ..|+.|.+.
T Consensus       249 d~~~~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~  281 (674)
T 3pfq_A          249 DLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQ  281 (674)
T ss_dssp             CSSSCCEECCBCCCBTTHHHHCCE-EEEEECBCT
T ss_pred             ccccccccccccccchhhhccCCc-ccceeeccc
Confidence            999999999999999999987654 778877654

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.67  E-value=3.4e-18  Score=118.68  Aligned_cols=99  Identities=14%  Similarity=0.232  Sum_probs=13.6

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCe-EEEEEEecCCC---CCCeeceeEEEeecCCCceEEEEEEeC-C--
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSS-KYRTKTCTDGG---KNPTFQEKFVLPLIEGLRELNVVVWNS-H--   80 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~t~~~~~~~---~~P~w~e~~~~~~~~~~~~L~~~v~~~-~--   80 (115)
                      .+.|+|+|++|++|+..+     ||||.+.+++. ..+|+++++ +   .||.|||+|.|.+.+....|.++|||. +  
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPR-SASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EECC---------------------------------------------------CCEECC-------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeC-CCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            468999999999998765     89999998765 568888776 7   999999999999744457899999994 3  


Q ss_pred             -CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           81 -TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        81 -~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                       ..+++++||++.+++.++..+.....||+|.+
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------CCEECC----
T ss_pred             ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence             25689999999999999987777778888854

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.58  E-value=2.1e-14  Score=104.47  Aligned_cols=98  Identities=27%  Similarity=0.495  Sum_probs=78.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-------eEEEEEEecCCCCCCeecee-EEEe-ec-CCCceEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-------SKYRTKTCTDGGKNPTFQEK-FVLP-LI-EGLRELNVVV   76 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-------~~~~t~~~~~~~~~P~w~e~-~~~~-~~-~~~~~L~~~v   76 (115)
                      ..+.|.|+|++|++|+..    ..||||++.+.+       .+++|+++.+++.||.|||+ |.|. +. +....|.|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            357899999999999753    579999999853       57899998865799999998 9998 63 4456899999


Q ss_pred             EeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           77 WNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        77 ~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      ||++    ++++|++.+||..|.. |.  .+.+|.+..|
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~-Gy--R~vpL~~~~g  755 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKP-GY--RHVPLRNESN  755 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCC-EE--EEEEEECTTS
T ss_pred             EecC----CCeeeEEEEEHHHcCC-cc--eEEEEeCCCC
Confidence            9974    7899999999999865 33  3467777654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.55  E-value=2.6e-14  Score=104.55  Aligned_cols=98  Identities=23%  Similarity=0.416  Sum_probs=77.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEEEecCCCCCCeece-eEEEe-e-cCCCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTKTCTDGGKNPTFQE-KFVLP-L-IEGLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~~~~~~~~~P~w~e-~~~~~-~-~~~~~~L~~~v~   77 (115)
                      ....|.|+|++|++|+..    ..||||++.+.+      .+++|+++.+++.||.||| .|.|. + .+....|.|+||
T Consensus       723 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~  798 (885)
T 3ohm_B          723 VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAF  798 (885)
T ss_dssp             CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEE
Confidence            345899999999999753    579999999853      2578999876579999999 69998 6 344568999999


Q ss_pred             eCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           78 NSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        78 ~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |++    ++++|++.+||..|.. |.  .+.+|.+..|
T Consensus       799 D~d----ddfiG~~~lpL~~L~~-Gy--R~vpL~~~~g  829 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRS-GY--HYVCLRNEAN  829 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCC-EE--EEEEEECTTS
T ss_pred             cCC----ccEEeeEEEEHHHcCC-Cc--eEEEecCCCC
Confidence            986    7899999999999864 33  3467776654

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.55  E-value=5.3e-14  Score=102.42  Aligned_cols=99  Identities=27%  Similarity=0.418  Sum_probs=78.0

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC------eEEEEE-EecCCCCCCeece-eEEE-eec-CCCceEEEE
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS------SKYRTK-TCTDGGKNPTFQE-KFVL-PLI-EGLRELNVV   75 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~------~~~~t~-~~~~~~~~P~w~e-~~~~-~~~-~~~~~L~~~   75 (115)
                      ...+.|.|+|++|++|+.    +..||||++.+.+      .+++|+ ++.+++.||.||| .|.| .+. +....|.|+
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            346789999999999985    3689999999842      367899 7776579999999 6999 773 445589999


Q ss_pred             EEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           76 VWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        76 v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      |||++    ++++|++.+|+..+.. |  -.+++|.+..|
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~-G--~r~v~L~~~~g  783 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNS-G--YHHLCLHSESN  783 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCC-E--EEEEEEECTTC
T ss_pred             EEEeC----CCccceEeeehhhcCC-C--cEEEeccCCCC
Confidence            99986    7899999999999864 2  34567766554

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.19  E-value=2.8e-09  Score=60.98  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=70.3

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeE----EEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSK----YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT   83 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~   83 (115)
                      ...|+|.+.++.--.-.......||||.+.+....    .+|-+.+..+..|.|++.|...+.++ +.|.+.|+....  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCCC--
Confidence            45688888765321111112247999999886432    23324455599999999999998755 799999997653  


Q ss_pred             CCceeEEEEEEcchhhc-----cCeeeeEEeccc
Q 048139           84 PDEFIGSGRIQLHKALS-----QGFDDAAWPLQT  112 (115)
Q Consensus        84 ~~~~lG~~~v~l~~l~~-----~~~~~~~~~L~~  112 (115)
                        +|++.+++++.+|..     ++..+.|..|.+
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP  113 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP  113 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence              899999999999984     345566778865

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.13  E-value=3.3e-09  Score=61.46  Aligned_cols=102  Identities=13%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             ccCceEEEEEeeecCCCCCC-CCCCCCcEEEEEECCeE----EEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCC
Q 048139            6 IQGLPLEITVVGCYNLDDKE-WISRQDPYVCLEYGSSK----YRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSH   80 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~----~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~   80 (115)
                      -....|+|.+.+..--+-.. .....||||.+.+....    .+|-+.+..+..|.|++.|...+.++ +.|.|.|+...
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcCC
Confidence            34567889887764322111 12247999999886432    33312233488999999999998754 79999999655


Q ss_pred             CCCCCceeEEEEEEcchhhc-----cCeeeeEEeccc
Q 048139           81 TLTPDEFIGSGRIQLHKALS-----QGFDDAAWPLQT  112 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~-----~~~~~~~~~L~~  112 (115)
                      .    +|++.++|++.+|..     ++..+.|..|.+
T Consensus        86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP  118 (138)
T 2enj_A           86 V----DLISETTVELYSLAERCRKNNGKTEIWLELKP  118 (138)
T ss_dssp             C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS
T ss_pred             C----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence            3    799999999999984     345566778865

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.64  E-value=0.054  Score=33.97  Aligned_cols=93  Identities=12%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             cccccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-------------------CeEEEEEEecCCCCCCeeceeEEE
Q 048139            3 ISGIQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-------------------SSKYRTKTCTDGGKNPTFQEKFVL   63 (115)
Q Consensus         3 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-------------------~~~~~t~~~~~~~~~P~w~e~~~~   63 (115)
                      |++...+.|.|++.++.--... .....+.-+.+.+.                   ...++|.+... ..+|.|+|++.+
T Consensus        21 ~Pgd~RNdLYVtl~~g~F~~~~-k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YH-nk~P~w~EtIKi   98 (220)
T 3l4c_A           21 MPGDVRNDIYVTLVQGDFDKGS-KTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQ-VKQPRWFETVKV   98 (220)
T ss_dssp             -----CEEEEEEEEEEECCCSS-SSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTT-CSSCCCCEEEEE
T ss_pred             cCCCCcccEEEEeeEeEECCCC-CCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEc-CCCCCceEeEEE
Confidence            4556777888998887422211 11122333433331                   12566666655 789999999999


Q ss_pred             eecC---CCceEEEEEEeCCCC----CCCceeEEEEEEcch
Q 048139           64 PLIE---GLRELNVVVWNSHTL----TPDEFIGSGRIQLHK   97 (115)
Q Consensus        64 ~~~~---~~~~L~~~v~~~~~~----~~~~~lG~~~v~l~~   97 (115)
                      .++.   ...-|.|+++....-    ..+..+|.+.+||.+
T Consensus        99 ~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           99 AIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             EECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            9854   345788998765421    223478999999864

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.40  E-value=0.063  Score=31.89  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             ccCceEEEEEeeecCCCCC-CCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecCC--------CceEE
Q 048139            6 IQGLPLEITVVGCYNLDDK-EWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--------LRELN   73 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~-~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~L~   73 (115)
                      ...+.++|.|.++.--+.. ...+..+|...+.+.   -+.+.|.+..  +.+|.+|-+..+.+...        ...+.
T Consensus        15 ~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           15 RGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             SSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            3567888888887421110 112234565544443   4577777765  78999998888887332        25788


Q ss_pred             EEEEeCCCCCCCceeEEEEEEcchhhccCe-eeeEEecccCC
Q 048139           74 VVVWNSHTLTPDEFIGSGRIQLHKALSQGF-DDAAWPLQTKT  114 (115)
Q Consensus        74 ~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~-~~~~~~L~~~~  114 (115)
                      ++++... ....+.+|++.+++.+++..+. .....+|.+..
T Consensus        93 lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~  133 (156)
T 2yrb_A           93 LEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIGTK  133 (156)
T ss_dssp             EEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSS
T ss_pred             EEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCC
Confidence            8888865 3356799999999999986533 44444665544

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.69  E-value=0.14  Score=38.78  Aligned_cols=90  Identities=11%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE--CCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY--GSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVV   76 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v   76 (115)
                      -...+.|+|..+.++...   ...+.|+.+.+  ++.    ...|....- ..+|.|||.+.|.+    -+....|.++|
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLPr~a~L~~ti  290 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLPRMARLCFAL  290 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCCcccEEEEEE
Confidence            346789999999887533   23455666554  332    334444333 66899999999987    25678899999


Q ss_pred             EeCCCC--C----------CCceeEEEEEEcchhhc
Q 048139           77 WNSHTL--T----------PDEFIGSGRIQLHKALS  100 (115)
Q Consensus        77 ~~~~~~--~----------~~~~lG~~~v~l~~l~~  100 (115)
                      |+....  +          .+..+|-+.+++-+...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~  326 (940)
T 2wxf_A          291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKD  326 (940)
T ss_dssp             EEEC----------------CEEEEEEEEESBCTTS
T ss_pred             EEecCCccCccccccccccccceEEEEeeeEECCcC
Confidence            985321  1          24489999999887543

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=94.92  E-value=0.49  Score=36.43  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             ccCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C----eEEEEEEecCCCCCCeeceeEEEee----cCCCceEEEE
Q 048139            6 IQGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S----SKYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVV   75 (115)
Q Consensus         6 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~----~~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~   75 (115)
                      .-...+.|+|..+.++.. ......+.|+.+.+.  +    ....|+...  ..+|.|||.+.|.+    -+....|.++
T Consensus       352 ~~~~~f~v~i~~~~~~n~-~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~--~~~~~Wne~l~f~i~i~dLPr~arL~~t  428 (1091)
T 3hhm_A          352 VINSALRIKILCATYVNV-NIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLNYDIYIPDLPRAARLCLS  428 (1091)
T ss_dssp             GCCSEEEEEEEEESCCCC-CCSSCCCCCEEEEEESSSCSSCCEECCCCCC--TTSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             hCCCCEEEEEEEecCCCC-CccccceEEEEEEEEECCEEccCceeccccC--CCCCCCCeeEEecCccccCChhcEEEEE
Confidence            345678999999877742 222234567777663  2    234444332  45778999999997    2567899999


Q ss_pred             EEeCCCC----CCCceeEEEEEEcchhhc
Q 048139           76 VWNSHTL----TPDEFIGSGRIQLHKALS  100 (115)
Q Consensus        76 v~~~~~~----~~~~~lG~~~v~l~~l~~  100 (115)
                      ||+....    ..+..+|-+.+++-+...
T Consensus       429 l~~~~~~~~~~~~~~~lg~~n~~lfd~~~  457 (1091)
T 3hhm_A          429 ICSVKGRKGAKEEHCPLAWGNINLFDYTD  457 (1091)
T ss_dssp             ECCCCCCC-------CCEEEEEESBCTTC
T ss_pred             EEEecCccCcccccceeEEeeeeeEccCC
Confidence            9986532    124579999999887643

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=91.27  E-value=0.27  Score=37.84  Aligned_cols=89  Identities=11%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEE--EECCe----EEEEEEecCCCCCCeeceeEEEee----cCCCceEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCL--EYGSS----KYRTKTCTDGGKNPTFQEKFVLPL----IEGLRELNVVV   76 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~--~~~~~----~~~t~~~~~~~~~P~w~e~~~~~~----~~~~~~L~~~v   76 (115)
                      -...+.|+|..+.++...   ...+.|+.+  ..++.    ...|....- +.+|.|||.+.|.+    -+....|.++|
T Consensus       351 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~-~~~~~Wnewl~f~i~~~dLPr~a~L~~ti  426 (1092)
T 2y3a_A          351 NNNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISG-KNDHIWNEQLEFDINICDLPRMARLCFAV  426 (1092)
T ss_dssp             CCSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCS-SSCCCCCEEEEEEEESSSCCTTCEEEEEC
T ss_pred             cCCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCCccceeEEeCCccccCChhcEEEEEE
Confidence            346788999988877533   233445443  33433    233433332 56899999999987    24567899999


Q ss_pred             EeCCCC----------------------CCCceeEEEEEEcchhh
Q 048139           77 WNSHTL----------------------TPDEFIGSGRIQLHKAL   99 (115)
Q Consensus        77 ~~~~~~----------------------~~~~~lG~~~v~l~~l~   99 (115)
                      |+....                      ..+..+|-+.+++-+..
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  471 (1092)
T 2y3a_A          427 YAVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFK  471 (1092)
T ss_dssp             CCC------------------------------CCEEEEESBCTT
T ss_pred             EEecCccccccccccccccccccccccccccceeEEEeeeeECCc
Confidence            985210                      11237889999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	6e-20
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	5e-12
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-10
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	7e-10
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-09
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-09
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-07
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-07
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-07
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	9e-06
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-05
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-04
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-04
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-04

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 76.7 bits (188), Expect = 6e-20
 Identities = 25/105 (23%), Positives = 44/105 (41%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           LE+ +V    L+D ++++  DPYV L   +   ++      G  P + E F+  + EG  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
           EL   +++    T D+ +G   I L     +G          K  
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE 116

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (135), Expect = 5e-12
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYV---CLEYGSSKYRTKT-CTDGGKNPTFQEKFVLPLI 66
           L + V    NL   +     DPYV    +    S+ + KT       NP + E F   L 
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76

Query: 67  EGL--RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW-PLQTK 113
           E    R L+V +W+    + ++F+GS    + +    G D   W  L ++
Sbjct: 77  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG--WFKLLSQ 124

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 3e-11
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           L++ V+   +L   ++  + DP+  LE G+ + +T T      NP + + F  P+ +   
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-NLNPEWNKVFTFPIKDIHD 66

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
            L V V++     P +F+G   I L   +  G  +  + L+ K  
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLS-IRDGQPN-CYVLKNKDL 109

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 2e-10
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 11  LEITVVGCYNL--DDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVL 63
           L + ++    L   +K   S  DP V +E       +   +T   T+ G NP +  +F  
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 64  PLI-EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG 115
            +    L  +  +V +  + + ++FIG   I  +   S         L +K G
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN---SLKQGYRHVHLLSKNG 115

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 7e-10
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTD----GGKNPTFQEKFVLPLI 66
           L +T++G  +L  +E    ++PYV + +   +                P + + F+   +
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 67  EGL----RELNVVVWNSHTLTPD--EFIGSGRIQLHKALSQGFDDAAW-PLQ 111
                  R L + +W+   +  +  EF+G   I+L  AL        W  LQ
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH--WYKLQ 125

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 1e-09
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVC---LEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIE 67
           L + ++    L   +     DPYV    L     K+ TK       NP F E+F   +  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPY 94

Query: 68  ---GLRELNVVVWNSHTLTPDEFIGSGRIQLHK-ALSQGFDDAAW-PLQT 112
              G + L + V++    +  + IG  ++ ++        ++  W  LQ+
Sbjct: 95  SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE--WRDLQS 142

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           L+ITV+     ++K+      PYV +       +T+ C +   +P +++   +  +  + 
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVI-VTPVS 65

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQ 101
           +L+  VW+  TL  D  +G+  + +++ L  
Sbjct: 66  KLHFRVWSHQTLKSDVLLGTAALDIYETLKS 96

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 3e-09
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLR 70
           L + V        +E     + YV L+  + K  T      G  P++++ F+  +     
Sbjct: 4   LCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLDL 58

Query: 71  ELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAA-W-PLQTKTG 115
            L V VWN   L  D  +G+  I L        +    W  L ++  
Sbjct: 59  GLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI 104

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (108), Expect = 4e-08
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLE--------------YGSSKYRTKTCTDGGKNPT 56
           L I ++   NL  ++     DP+V +                   K RTK       NP 
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV-QKSLNPE 78

Query: 57  FQEKFVLPLIEGL----RELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW-PLQ 111
           + +  +   I       + L V VW+    + ++F+G   I L    S   +   W PL+
Sbjct: 79  WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS-TSHLDNTPRWYPLK 137

Query: 112 TKT 114
            +T
Sbjct: 138 EQT 140

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 1e-07
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 11  LEITVVGCYNLDDKEWISR-QDPYVCLEY---GSSKYRTKTCTDGGKNPTFQEKFVLPLI 66
             + +     L   +  S   DPY+ +        K +T+       +P F E F    I
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVL-RKTLDPAFDETFTFYGI 82

Query: 67  E----GLRELNVVVWNSHTLTPDEFIGSGRIQLHK 97
                    L+  + +    + D+ IG   I L  
Sbjct: 83  PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 3e-07
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLE-----YGSSKYRTKTCTDGGKNPTFQEKFVLPL 65
           L + V+   +L   +     DPYV +         SK +T        N  F E FV  +
Sbjct: 17  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK-KCTPNAVFNELFVFDI 75

Query: 66  IE---GLRELNVVVWNSHTLTPDEFIGSGRIQLH 96
                    +  +V +S   + +E IG   +   
Sbjct: 76  PCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-07
 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 5/109 (4%)

Query: 11  LEITVVGCYNL---DDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQ--EKFVLPL 65
             + V+    +      + +   DPYV L   ++    K       +      E F   L
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 66  IEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT 114
                 +  +         DE +G+    +         +  +     T
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 113

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 9e-06
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCT----DGGKNPTFQEKFVLPLI 66
           L +T++   NL   +     DPYV     S   R K           NPT+ E  V  + 
Sbjct: 22  LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81

Query: 67  ---EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFD 104
                   L++ V +   +  +E IG  R+    A   G +
Sbjct: 82  PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE 122

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCL-----EYGSSKYRTKTCTDGGKNPTFQEKFVLPL 65
           L + ++ C +L   +     DP+V L         +K++T+       NP F E+F   +
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK-KKTLNPEFNEEFFYDI 75

Query: 66  IE---GLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFD 104
                  + L++ VW+      +++IG  ++    A  +   
Sbjct: 76  KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG-ISAKGERLK 116

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEY----GSSKYRTKTCTDGGKNPTFQEKFVLPLI 66
           L +T +     +        D YV        GS + +T        + T++E  VLPL 
Sbjct: 28  LFVTRLEAVTSNHDGG---CDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLA 83

Query: 67  ---EGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAW-PLQTK 113
                   L + +      +     G  R+ L    S     A W  L+T 
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG-TSVPLGAAQWGELKTS 133

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 11  LEITVVGCYNLDDKEWISRQ-----------DPYVCLEYGSSKYRTKTCTDGGKNPTFQE 59
           L+I +    +L    W  R            DPY+ L    S+           +P + +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 60  KFVLPLIEGLRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQG 102
           +FV  +  G +   + V++   +  D+F+ +  IQ  + L  G
Sbjct: 68  EFVTDVCNGRKIE-LAVFHDAPIGYDDFVANCTIQFEELLQNG 109

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 11  LEITVVGCYNLDDKEWISRQDPYVCLEYGSSK----YRTKTCTDGGKNPTFQEKFVLPLI 66
           L + ++   NL   +     DPYV +    +      +  T      NP + E F   + 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 67  E---GLRELNVVVWNSHTLTPDEFIGSGRIQLH 96
                  ++ V V +   +  ++ IG   +  +
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.93
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.92
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.91
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.9
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.9
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.89
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.89
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.89
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.88
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.87
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.86
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.85
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.85
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.84
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.83
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.82
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.77
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.66
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.62
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.65
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	90.81

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.9e-25  Score=129.67  Aligned_cols=105  Identities=24%  Similarity=0.459  Sum_probs=92.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      ..|.|.|+|++|++|+..+..+.+||||++.++...++|+++.+++.||.|||+|.|.+......|.|+|||++..++|+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~   87 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDD   87 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTC
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCC
Confidence            34799999999999999998999999999999988999998875588999999999999766678999999999888999


Q ss_pred             eeEEEEEEcchhhccCee-eeEEecc
Q 048139           87 FIGSGRIQLHKALSQGFD-DAAWPLQ  111 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~-~~~~~L~  111 (115)
                      +||++.++|.++...+.. ..||.|.
T Consensus        88 ~iG~~~i~L~~l~~~~~~~~~~~~l~  113 (136)
T d1wfja_          88 AVGEATIPLEPVFVEGSIPPTAYNVV  113 (136)
T ss_dssp             CSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred             EEEEEEEEhHHhcccCCcCcEEEEec
Confidence            999999999998776554 5566654

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=129.17  Aligned_cols=104  Identities=23%  Similarity=0.398  Sum_probs=91.0

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCc
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDE   86 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~   86 (115)
                      .-|.|.|+|++|++|+..+..|.+||||++.++..+++|+++.+ +.||.|+|.|.|.+......|.|+|||++..++++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-NLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSS-CSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCC-ceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            34789999999999999988899999999999999999999887 99999999999999766678999999998888899


Q ss_pred             eeEEEEEEcchhhccCeeeeEEecccC
Q 048139           87 FIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        87 ~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +||++.+++.++..+.  ..|+.|..+
T Consensus        83 ~lG~~~i~l~~l~~~~--~~~~~l~~~  107 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQ--PNCYVLKNK  107 (126)
T ss_dssp             ECCBCEEEGGGCCSSC--CEECCCBCS
T ss_pred             eEEEEEEEHHHCCCCC--ceEEEcccc
Confidence            9999999999986543  356666544

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.4e-24  Score=123.68  Aligned_cols=105  Identities=28%  Similarity=0.334  Sum_probs=90.5

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE-----CCeEEEEEEecCCCCCCeeceeEEEeecC--CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY-----GSSKYRTKTCTDGGKNPTFQEKFVLPLIE--GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~-----~~~~~~t~~~~~~~~~P~w~e~~~~~~~~--~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|.+|++|+..+..+.+||||++.+     ...+++|+++.+ +.||.|||.|.|.+..  ....|.|+|||+
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d~   91 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEIWDW   91 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccccCCEEeEEEEec
Confidence            56889999999999999888889999999998     355789999886 9999999999999843  245799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      +..+++++||.+.+++.++..+ ....||+|.+.
T Consensus        92 d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~  124 (132)
T d1a25a_          92 DLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  124 (132)
T ss_dssp             CSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             CCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCC
Confidence            9888999999999999998654 35678899763

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.5e-23  Score=122.29  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEE---CCeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEY---GSSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~---~~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+   ....++|+++++ +.+|.|||.|.|.+..   ....|.|+|||++
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d  110 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence            45789999999999998888888999999998   356788998876 9999999999999832   3568999999999


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEeccc
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQT  112 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~  112 (115)
                      ..+++++||++.++|.++..+.....|+.|.+
T Consensus       111 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            88889999999999999977777788989875

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-22  Score=117.66  Aligned_cols=91  Identities=21%  Similarity=0.422  Sum_probs=81.5

Q ss_pred             CceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCce
Q 048139            8 GLPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEF   87 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~   87 (115)
                      .+.|.|+|++|++++.....+.+||||.+.++...++|+++.+ +.||.|||.|.|.+.+. ..|.|+|||++..++|++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~-~~l~~~V~d~d~~~~d~~   82 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLKSDVL   82 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSS-CSSCEEEEEEEEEECTT-CEEEEEEEECCSSSCCEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEe-cccEEEcceEEEEEEec-ceeEEEEEEccCCCCCce
Confidence            4789999999999998888888999999999999999999876 99999999999999654 689999999999999999


Q ss_pred             eEEEEEEcchhhc
Q 048139           88 IGSGRIQLHKALS  100 (115)
Q Consensus        88 lG~~~v~l~~l~~  100 (115)
                      ||++.++|.++..
T Consensus        83 iG~~~i~L~~l~~   95 (133)
T d2nq3a1          83 LGTAALDIYETLK   95 (133)
T ss_dssp             EEEEEEEHHHHHH
T ss_pred             EEEEEEEHHHhhh
Confidence            9999999999865

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.89  E-value=1.4e-22  Score=118.15  Aligned_cols=107  Identities=21%  Similarity=0.318  Sum_probs=88.5

Q ss_pred             ccccCceEEEEEeeecCCCCCC-----------CCCCCCcEEEEEECCeE-EEEEEecCCCCCCeeceeEEEeecCCCce
Q 048139            4 SGIQGLPLEITVVGCYNLDDKE-----------WISRQDPYVCLEYGSSK-YRTKTCTDGGKNPTFQEKFVLPLIEGLRE   71 (115)
Q Consensus         4 ~~~~~~~l~v~i~~a~~l~~~~-----------~~~~~~p~~~~~~~~~~-~~t~~~~~~~~~P~w~e~~~~~~~~~~~~   71 (115)
                      |....|.|.|+|.+|++|++.+           ..+..||||++.++... .+|++..+ +.+|.|||.|.|.+.+ ...
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~-t~~P~Wne~f~f~v~~-~~~   78 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCN-GRK   78 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE-ECE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcC-CCCccCccEEEEEEec-CCc
Confidence            3456799999999999998753           34568999999998765 56777666 8999999999999964 368


Q ss_pred             EEEEEEeCCCCCCCceeEEEEEEcchhhccCe--eeeEEeccc
Q 048139           72 LNVVVWNSHTLTPDEFIGSGRIQLHKALSQGF--DDAAWPLQT  112 (115)
Q Consensus        72 L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~--~~~~~~L~~  112 (115)
                      |.|+|||++..++|++||.+.+++.++...+.  ...|++|.+
T Consensus        79 l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p  121 (136)
T d1gmia_          79 IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             eEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC
Confidence            99999999988899999999999999977643  456788864

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.8e-22  Score=116.25  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=83.0

Q ss_pred             CceEEEEEeeecCCCC--CCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeec-CCCceEEEEEEeC
Q 048139            8 GLPLEITVVGCYNLDD--KEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLI-EGLRELNVVVWNS   79 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~--~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~-~~~~~L~~~v~~~   79 (115)
                      +..|+|+|++|++|+.  .+..+.+||||++.+.     ..+++|+++++.+.||.|+|+|.|.+. +....|.|+|||+
T Consensus         3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~   82 (131)
T d1qasa2           3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY   82 (131)
T ss_dssp             CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence            4679999999999974  3456678999999983     468888887764679999999999884 3456799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      +..+++++||++.++|..+..+   ..+++|.+..|
T Consensus        83 d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g  115 (131)
T d1qasa2          83 DSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNG  115 (131)
T ss_dssp             CTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTS
T ss_pred             cCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCc
Confidence            9888899999999999998542   34678877654

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.2e-23  Score=117.49  Aligned_cols=104  Identities=17%  Similarity=0.288  Sum_probs=87.9

Q ss_pred             CceEEEEEeeecCCCCCC---CCCCCCcEEEEEECC---eEEEEEEecCCCCCCeeceeEEEeecC-CCceEEEEEEeCC
Q 048139            8 GLPLEITVVGCYNLDDKE---WISRQDPYVCLEYGS---SKYRTKTCTDGGKNPTFQEKFVLPLIE-GLRELNVVVWNSH   80 (115)
Q Consensus         8 ~~~l~v~i~~a~~l~~~~---~~~~~~p~~~~~~~~---~~~~t~~~~~~~~~P~w~e~~~~~~~~-~~~~L~~~v~~~~   80 (115)
                      .+.|+|+|++|++|+...   ..+.+||||++.++.   .+++|+++.+ +.+|.|+|.|.|.+.. ....|.|+|||++
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCcccCcEEEEEEECC
Confidence            478999999999998643   357889999999863   5788998877 9999999999999854 4567999999998


Q ss_pred             CCCCCceeEEEEEEcchhhccCeeeeEEecccC
Q 048139           81 TLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~  113 (115)
                      .. ++++||++.++|.++..+.....||+|.+.
T Consensus        81 ~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~  112 (126)
T d1rlwa_          81 YV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV  112 (126)
T ss_dssp             SS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTT
T ss_pred             CC-CCCeEEEEEEEHHHccCCCeEEEEEEccCC
Confidence            54 688999999999999887778888898654

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=4.3e-24  Score=125.41  Aligned_cols=107  Identities=22%  Similarity=0.301  Sum_probs=90.5

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC--------------eEEEEEEecCCCCCCeeceeEEEee-c---CC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS--------------SKYRTKTCTDGGKNPTFQEKFVLPL-I---EG   68 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~--------------~~~~t~~~~~~~~~P~w~e~~~~~~-~---~~   68 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..              .+++|+++++ +.||.|||.|.|.. .   ..
T Consensus        16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~   94 (142)
T d1rh8a_          16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLM   94 (142)
T ss_dssp             ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHT
T ss_pred             eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeecccccC
Confidence            3578999999999999998889999999999842              1346777776 88999999999984 2   14


Q ss_pred             CceEEEEEEeCCCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           69 LRELNVVVWNSHTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        69 ~~~L~~~v~~~~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      ...|.|+|||++..+++++||++.++|.++........||+|.++.
T Consensus        95 ~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          95 KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             TCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             CCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            5689999999998888999999999999998877778899998874

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.5e-22  Score=115.66  Aligned_cols=106  Identities=21%  Similarity=0.256  Sum_probs=86.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC---CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeCC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG---SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNSH   80 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~---~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~~   80 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+.   ..+++|+++.+ +.+|.|+|+|.|.+..   ....|.|+|||++
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            567899999999999988888899999999984   45789999886 9999999999999843   3457999999999


Q ss_pred             CCCCCceeEEEEEEcchhh-ccCe-eeeEEecccC
Q 048139           81 TLTPDEFIGSGRIQLHKAL-SQGF-DDAAWPLQTK  113 (115)
Q Consensus        81 ~~~~~~~lG~~~v~l~~l~-~~~~-~~~~~~L~~~  113 (115)
                      ..+++++||++.+++.... .... ...|++|.+.
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            8889999999999865443 3332 3458888653

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.4e-21  Score=111.68  Aligned_cols=99  Identities=21%  Similarity=0.257  Sum_probs=83.6

Q ss_pred             ceEEEEEeeecCCCCCCCCCCCCcEEEEEECCeEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCCCCcee
Q 048139            9 LPLEITVVGCYNLDDKEWISRQDPYVCLEYGSSKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLTPDEFI   88 (115)
Q Consensus         9 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~~~~~l   88 (115)
                      +.|.|+|.+|++|...+   ..||||.+.+++.+.+|++.+  +.||.|+|.|.|.+......|.|+|||++.. .|++|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k--~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~l   75 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMV   75 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE--SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec--CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcce
Confidence            57999999999998765   579999999999999999875  4599999999999976678899999999865 68999


Q ss_pred             EEEEEEcchhhccC--eeeeEEecccC
Q 048139           89 GSGRIQLHKALSQG--FDDAAWPLQTK  113 (115)
Q Consensus        89 G~~~v~l~~l~~~~--~~~~~~~L~~~  113 (115)
                      |++.++|+++..++  ...+||.|..+
T Consensus        76 G~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          76 GTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEEehhhccCCCCCCCeeEECCcc
Confidence            99999999997643  34568888653

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-21  Score=111.68  Aligned_cols=104  Identities=20%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEeC
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWNS   79 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~~   79 (115)
                      ..+.|.|+|++|++|+.   .+.+||||++.+.    ...++|+++.+ +.+|.|+|.|.|.+..   ....|.|+|||+
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            46789999999999953   3568999999984    23577888776 9999999999999843   346799999999


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKT  114 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~  114 (115)
                      +..+++++||++.|+|.++........|+.|.++.
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            98889999999999999997666677888998764

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.7e-20  Score=108.60  Aligned_cols=105  Identities=17%  Similarity=0.217  Sum_probs=84.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCC-CCcEEEEEE---CCeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISR-QDPYVCLEY---GSSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~-~~p~~~~~~---~~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+. +||||++.+   ....++|+++++ +.||.|||.|.|. +..   ....|.|+|||
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            45689999999999998776654 699999998   456788999876 9999999999997 432   24579999999


Q ss_pred             CCCCCCCceeEEEEEEcchhhc-cCeeeeEEeccc
Q 048139           79 SHTLTPDEFIGSGRIQLHKALS-QGFDDAAWPLQT  112 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~~-~~~~~~~~~L~~  112 (115)
                      .+..+++++||++.++|.++.. ++....|+.+.+
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            9988899999999999999853 444445555443

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-20  Score=108.47  Aligned_cols=103  Identities=27%  Similarity=0.441  Sum_probs=81.6

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEe-ecC---CCceEEEEEE
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLP-LIE---GLRELNVVVW   77 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~-~~~---~~~~L~~~v~   77 (115)
                      ..+.|.|+|.+|++|+..+..+.+||||++.+.     ..+++|+++++ +.+|.|||.|.|. +..   ....|.|+||
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            457899999999999988888889999999982     34788999886 9999999999997 432   2457999999


Q ss_pred             eCCCC--CCCceeEEEEEEcchhhccCeeeeEEecc
Q 048139           78 NSHTL--TPDEFIGSGRIQLHKALSQGFDDAAWPLQ  111 (115)
Q Consensus        78 ~~~~~--~~~~~lG~~~v~l~~l~~~~~~~~~~~L~  111 (115)
                      |++..  .++++||++.+++.++...+. .+||+|.
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            98865  345699999999999876554 5688884

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.9e-20  Score=107.89  Aligned_cols=90  Identities=22%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+|||+++.+.  .   .+++|+++++ +.+|.|||+|.|.+..   ....|.|+|||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            356899999999999988888889999999983  2   3567888776 8999999999999843   34569999999


Q ss_pred             CCCCCCCceeEEEEEEcch
Q 048139           79 SHTLTPDEFIGSGRIQLHK   97 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~   97 (115)
                      ++..+++++||++.+++..
T Consensus        92 ~~~~~~~~~iG~~~i~l~~  110 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATA  110 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCCCEEEEEEEcchh
Confidence            9988899999999999875

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.1e-19  Score=104.50  Aligned_cols=91  Identities=22%  Similarity=0.408  Sum_probs=78.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC-----CeEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG-----SSKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-----~~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|.+|++|+..+..+.+||||++.+.     ..+++|+++++ +.+|.|||.|.|.+..   ....|.|++|+
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            567899999999999988888889999999973     34678998886 9999999999999843   34679999999


Q ss_pred             CCCCCCCceeEEEEEEcchh
Q 048139           79 SHTLTPDEFIGSGRIQLHKA   98 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l   98 (115)
                      .+..+++++||++.+++..+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCCCEEEEEEeCcccc
Confidence            99888999999999999753

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.5e-19  Score=107.42  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=85.3

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEEC--C---eEEEEEEecCCCCCCeeceeEEEeecCC---CceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYG--S---SKYRTKTCTDGGKNPTFQEKFVLPLIEG---LRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~---~~~~t~~~~~~~~~P~w~e~~~~~~~~~---~~~L~~~v~~   78 (115)
                      ..+.|.|+|.+|++|+..+..+.+||||++.+.  .   ..++|++.++ +.||.|||+|.|.+...   ...|.|+||+
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccC-CCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            357899999999999988888899999999884  2   2457887765 99999999999998532   4579999999


Q ss_pred             CCCCCCCceeEEEEEEcchh----------hc--cCeeeeEEecccC
Q 048139           79 SHTLTPDEFIGSGRIQLHKA----------LS--QGFDDAAWPLQTK  113 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l----------~~--~~~~~~~~~L~~~  113 (115)
                      ++..+++++||++.+++...          ..  .....+|+.|.++
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            99998999999999998652          22  2334578888753

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.4e-20  Score=109.64  Aligned_cols=92  Identities=25%  Similarity=0.298  Sum_probs=78.7

Q ss_pred             cCceEEEEEeeecCCCCCCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecC---CCceEEEEEEe
Q 048139            7 QGLPLEITVVGCYNLDDKEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIE---GLRELNVVVWN   78 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~---~~~~L~~~v~~   78 (115)
                      ..+.|.|+|++|++|+..+..+.+||||++.+..     .+++|+++++ +.+|.|+|.|.|.+..   ....|.|++|+
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            4578999999999999888888899999999852     2578888876 9999999999998843   34579999999


Q ss_pred             CCCCCCCceeEEEEEEcchhh
Q 048139           79 SHTLTPDEFIGSGRIQLHKAL   99 (115)
Q Consensus        79 ~~~~~~~~~lG~~~v~l~~l~   99 (115)
                      ++..+++++||++.+++..+.
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTC
T ss_pred             cCCCCCCcEEEEEEECchHcC
Confidence            998889999999999998763

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.1e-16  Score=87.38  Aligned_cols=95  Identities=27%  Similarity=0.412  Sum_probs=68.9

Q ss_pred             eEEEEEeeecCCCCCCCCCCCCcEEEEEEC------CeEEEEEE-ecCCCCCCeecee-EEE-eec-CCCceEEEEEEeC
Q 048139           10 PLEITVVGCYNLDDKEWISRQDPYVCLEYG------SSKYRTKT-CTDGGKNPTFQEK-FVL-PLI-EGLRELNVVVWNS   79 (115)
Q Consensus        10 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~------~~~~~t~~-~~~~~~~P~w~e~-~~~-~~~-~~~~~L~~~v~~~   79 (115)
                      +|.|+|++|++|+..    ..|||+++.+.      ..+++|++ ..+++.||.|||+ |.+ .+. +....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999754    47999999983      23455554 3344899999976 433 333 3456799999997


Q ss_pred             CCCCCCceeEEEEEEcchhhccCeeeeEEecccCCC
Q 048139           80 HTLTPDEFIGSGRIQLHKALSQGFDDAAWPLQTKTG  115 (115)
Q Consensus        80 ~~~~~~~~lG~~~v~l~~l~~~~~~~~~~~L~~~~~  115 (115)
                      +    ++++|++.+|++.+..+   -++.+|.+..|
T Consensus        78 d----~~~lG~~~ipl~~l~~G---yR~vpL~~~~g  106 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG---YHHLCLHSESN  106 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred             C----CCEEEEEEEEcccCcCC---ceEEEccCCCc
Confidence            5    78999999999988543   34456666554

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=4.1e-15  Score=84.73  Aligned_cols=96  Identities=14%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             eEEEEEeeecCCCC-CCCCCCCCcEEEEEECC-----eEEEEEEecCCCCCCeeceeEEEeecCCCceEEEEEEeCCCCC
Q 048139           10 PLEITVVGCYNLDD-KEWISRQDPYVCLEYGS-----SKYRTKTCTDGGKNPTFQEKFVLPLIEGLRELNVVVWNSHTLT   83 (115)
Q Consensus        10 ~l~v~i~~a~~l~~-~~~~~~~~p~~~~~~~~-----~~~~t~~~~~~~~~P~w~e~~~~~~~~~~~~L~~~v~~~~~~~   83 (115)
                      .|.|.+... ++.. ....+.+||||.+++..     ..++|++.++ +.||.|||+|.|.+.+. ..|.|.|||++   
T Consensus         4 ~~~~~~~~~-~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~~-~~l~i~V~d~d---   77 (123)
T d1bdya_           4 FLRISFNSY-ELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYEG-RVIQIVLMRAA---   77 (123)
T ss_dssp             EEEEEEEEE-ECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCTT-CEEEEEEEEET---
T ss_pred             eEEEEEEEe-ecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEccc-cEEEEEEEEcc---
Confidence            356665543 3333 33345689999999853     2355777665 99999999999999654 68999999975   


Q ss_pred             CCceeEEEEEEcchhhc-----cCeeeeEEeccc
Q 048139           84 PDEFIGSGRIQLHKALS-----QGFDDAAWPLQT  112 (115)
Q Consensus        84 ~~~~lG~~~v~l~~l~~-----~~~~~~~~~L~~  112 (115)
                       ++++|.+.+++..+..     ++....|+.|.+
T Consensus        78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~  110 (123)
T d1bdya_          78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP  110 (123)
T ss_dssp             -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred             -ccccCccEEehhheeeccccCCCcccEEEeCCC
Confidence             6799999999998854     345566778853

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.7  Score=25.57  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             cCceEEEEEeeecCCCCC-CCCCCCCc--EEEEEEC-CeEEEEEEecCCCCCCeeceeEEEeecCC--------CceEEE
Q 048139            7 QGLPLEITVVGCYNLDDK-EWISRQDP--YVCLEYG-SSKYRTKTCTDGGKNPTFQEKFVLPLIEG--------LRELNV   74 (115)
Q Consensus         7 ~~~~l~v~i~~a~~l~~~-~~~~~~~p--~~~~~~~-~~~~~t~~~~~~~~~P~w~e~~~~~~~~~--------~~~L~~   74 (115)
                      ..+.+.+.|.++.--+.. ...+..+|  ||.+.+- ...+.|.+..  +.+|.+|-+..+.+...        ...+.+
T Consensus         8 gEnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~l   85 (142)
T d2yrba1           8 GENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   85 (142)
T ss_dssp             SCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEEE
Confidence            456677777776221111 11223344  6666554 4566677765  78999998888887332        367899


Q ss_pred             EEEeCCCCCCCceeEEEEEEcchhhccCe-eeeEEecccC
Q 048139           75 VVWNSHTLTPDEFIGSGRIQLHKALSQGF-DDAAWPLQTK  113 (115)
Q Consensus        75 ~v~~~~~~~~~~~lG~~~v~l~~l~~~~~-~~~~~~L~~~  113 (115)
                      +++... ......++.+.+.+.++..... ....-.|.++
T Consensus        86 elhqa~-g~~~~tvA~g~i~l~~lLd~~~r~~~s~~l~g~  124 (142)
T d2yrba1          86 EVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIGT  124 (142)
T ss_dssp             EEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBS
T ss_pred             EEEeec-CCCcceeEEEEEEhhHhhCccccccceeEEEcc
Confidence            999866 2345589999999999987532 2333344444