Citrus Sinensis ID: 048153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEMII
Secondary Structure (PSIPRED)
cEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHccccccccccccccccccccccEEEEEEcccEEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccHEEEccccccccccccccccHHHHccccccEEEEcccccccccccHHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEccHHHcccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mildlsynrlngsipdlVDGLSQLSHLILAHNNLEGKVPVQLCRlnqlqlldlsnnnlhglippcfdnttlhesysngsslkpfetsflVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKlichispqignltrIQTLnlshndligtipstfsnlkhIESLDLSynqlngkiplqlvELNTLAVFSVAHnnlsgkipewTAQFATfsessyegnhflcglplpicrspvtmlkasttnkemii
Flexible Loop (DISEMBL)
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYsngsslkpfetSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTmlkasttnkemii
Low Complexity Region (SEG)
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVqlcrlnqlqlldlsnnnlHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEMII
Disordered region (IsUnstruct)
****LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTM************
Disordered Region (DISOPRED)
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHES*******KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL***********************
Disordered Region (DISEMBL)
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKAS********
Disordered Region (DISPRO)
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEMII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.848	0.213	0.384	8e-28
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.949	0.213	0.322	2e-27
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.926	0.204	0.339	5e-27
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.914	0.194	0.334	9e-27
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.914	0.194	0.330	2e-26
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.805	0.205	0.355	4e-25
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.918	0.197	0.313	6e-25
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.832	0.206	0.342	2e-24
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.972	0.199	0.323	5e-24
Q6XAT2	967	LRR receptor-like serine/	no	no	0.836	0.222	0.343	3e-23

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 117/229 (51%), Gaps = 11/229 (4%)

Query: 13  SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFD--NTT 70
           S+P L      L  LI+A   L G VP  L     LQLLDLS N L G IPP     N+ 
Sbjct: 418 SVPSLQ--FKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSL 475

Query: 71  LHESYSNGSSLKPFETSFLVKNIYIYREKKILE------IFEFTTKNIAYTYQGRVVSYL 124
            +   SN + +     S       + +E  + E       F+    N       +  S+ 
Sbjct: 476 FYLDLSNNTFIGEIPHSLTSLQSLVSKENAVEEPSPDFPFFKKKNTNAGGLQYNQPSSFP 535

Query: 125 SGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG 184
             +DLS N L   I P+ G+L ++  LNL +N+L G IP+  S +  +E LDLS+N L+G
Sbjct: 536 PMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSG 595

Query: 185 KIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233
            IP  LV+L+ L+ FSVA+N LSG IP    QF TF  SS+EGN  LCG
Sbjct: 596 NIPPSLVKLSFLSTFSVAYNKLSGPIPT-GVQFQTFPNSSFEGNQGLCG 643

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.
Daucus carota (taxid: 4039)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 23/267 (8%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           +  + NRL G +P     LS+L+ L L +NN  G++P +L +   L  LDL+ N+L G I
Sbjct: 476 VSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEI 535

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNI-------------YIYREKKILEIFEFTT 109
           PP        ++ S    L    T   V+N+                R +++L+I    +
Sbjct: 536 PPRLGRQPGSKALS---GLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKS 592

Query: 110 KNIAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP 163
            +    Y G ++S  +       LDLS N+L   I  +IG +  +Q L LSHN L G IP
Sbjct: 593 CDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIP 652

Query: 164 STFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSES 223
            T   LK++   D S N+L G+IP     L+ L    +++N L+G IP+   Q +T   +
Sbjct: 653 FTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPAT 711

Query: 224 SYEGNHFLCGLPLPICRSPVTMLKAST 250
            Y  N  LCG+PLP C++    L A T
Sbjct: 712 QYANNPGLCGVPLPECKNGNNQLPAGT 738

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 127/265 (47%), Gaps = 27/265 (10%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           + LS NRL G IP  +  LS+L+ L L +N+L G VP QL     L  LDL++NNL G +
Sbjct: 504 ISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDL 563

Query: 63  PP--------CFDNTTLHESYS-----NGSSLKPFETSFLVKNIYIYREKKILEIFEFTT 109
           P             +   + ++      G+  +        + I   R +++  +     
Sbjct: 564 PGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPA 623

Query: 110 KNIAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP 163
             I   Y G  +   S        D+S N +   I P  GN+  +Q LNL HN + GTIP
Sbjct: 624 TRI---YSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIP 680

Query: 164 STFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSES 223
            +F  LK I  LDLS+N L G +P  L  L+ L+   V++NNL+G IP +  Q  TF  S
Sbjct: 681 DSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVS 739

Query: 224 SYEGNHFLCGLPLPIC----RSPVT 244
            Y  N  LCG+PL  C    R P+T
Sbjct: 740 RYANNSGLCGVPLRPCGSAPRRPIT 764

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  120 bits (301), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 132/278 (47%), Gaps = 43/278 (15%)

Query: 5   LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP 64
           L +N L G IP  +   ++L+ + L++N L G++P  L RL+ L +L L NN++ G IP 
Sbjct: 506 LDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPA 565

Query: 65  CFDNT------TLHESYSNGSSLKPF-------ETSFLVKNIYIY--------------- 96
              N        L+ ++ NGS   P          + L    Y+Y               
Sbjct: 566 ELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNL 625

Query: 97  ------REKKILEIFEFTTKNIAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGN 144
                 R++++  I      N    Y+G      +       LDLS NKL   I  ++G 
Sbjct: 626 LEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGA 685

Query: 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN 204
           +  +  LNL HNDL G IP     LK++  LDLSYN+ NG IP  L  L  L    +++N
Sbjct: 686 MYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNN 745

Query: 205 NLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRS 241
           NLSG IPE +A F TF +  +  N+ LCG PLPI C S
Sbjct: 746 NLSGMIPE-SAPFDTFPDYRF-ANNSLCGYPLPIPCSS 781

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 43/278 (15%)

Query: 5   LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP 64
           L +N L G IP  +   ++L+ + L++N L G++P  L RL+ L +L L NN++ G IP 
Sbjct: 506 LDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPA 565

Query: 65  CFDNT------TLHESYSNGSSLKPF-------ETSFLVKNIYIY--------------- 96
              N        L+ ++ NGS   P          + L    Y+Y               
Sbjct: 566 ELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNL 625

Query: 97  ------REKKILEIFEFTTKNIAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGN 144
                 R++++  I      N    Y+G      +       LDLS NKL   I  ++G 
Sbjct: 626 LEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGA 685

Query: 145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN 204
           +  +  LNL HNDL G IP     LK++  LDLSYN+ NG IP  L  L  L    +++N
Sbjct: 686 MYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNN 745

Query: 205 NLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRS 241
           NLSG IPE +A F TF +  +  N+ LCG PLP+ C S
Sbjct: 746 NLSGMIPE-SAPFDTFPDYRF-ANNSLCGYPLPLPCSS 781

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  115 bits (287), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 9   RLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN 68
           RL GS+P  +   ++L  L L+ N L G +P  +     L  LDLSNN+  G IP     
Sbjct: 426 RLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIP----- 480

Query: 69  TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLD 128
                      SL   E S   +NI +         F    ++       ++  +   ++
Sbjct: 481 ----------KSLTKLE-SLTSRNISVNEPSPDFPFFMKRNESARALQYNQIFGFPPTIE 529

Query: 129 LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL 188
           L  N L   I  + GNL ++   +L  N L G+IPS+ S +  +E+LDLS N+L+G IP+
Sbjct: 530 LGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPV 589

Query: 189 QLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233
            L +L+ L+ FSVA+NNLSG IP    QF TF  SS+E NH LCG
Sbjct: 590 SLQQLSFLSKFSVAYNNLSGVIPS-GGQFQTFPNSSFESNH-LCG 632

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           + LS NRL G IP  +  L  L+ L L++N+  G +P +L     L  LDL+ N  +G I
Sbjct: 517 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 576

Query: 63  PPCF--DNTTLHESYSNGSSLKPFETSFLVK------NIYIYREKKILEIFEFTTKN--- 111
           P      +  +  ++  G      +   + K      N+  ++  +  ++   +T+N   
Sbjct: 577 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 636

Query: 112 -IAYTYQGRVVSYLSG------LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS 164
             +  Y G              LD+S N L  +I  +IG++  +  LNL HND+ G+IP 
Sbjct: 637 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 696

Query: 165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESS 224
              +L+ +  LDLS N+L+G+IP  +  L  L    +++NNLSG IPE   QF TF  + 
Sbjct: 697 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAK 755

Query: 225 YEGNHFLCGLPLPIC 239
           +  N  LCG PLP C
Sbjct: 756 FLNNPGLCGYPLPRC 770

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 126/251 (50%), Gaps = 37/251 (14%)

Query: 5   LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP 64
           LS N +   IP+ V G   L+ L L +  L G++P  L    +L++LDLS N+ +G IP 
Sbjct: 409 LSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPH 468

Query: 65  C-----------FDNTTLHESYS------------NGSSLKPFETSFLVKNIYIYREKKI 101
                       F N TL  +              NG++ +  ++S +   +Y+ R K  
Sbjct: 469 WIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIP--LYVKRNK-- 524

Query: 102 LEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT 161
                 ++  + Y    +V  +   + L+ N+L   I P+IG L  +  L+LS N+  GT
Sbjct: 525 ------SSNGLPYN---QVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGT 575

Query: 162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS 221
           IP + S L ++E LDLSYN L G IPL    L  L+ FSVA+N L+G IP    QF +F 
Sbjct: 576 IPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPS-GGQFYSFP 634

Query: 222 ESSYEGNHFLC 232
            SS+EGN  LC
Sbjct: 635 HSSFEGNLGLC 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 28/278 (10%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L  N+  G IP     +S+LS L ++ N+L G +PV+L    +L  +DL+NN L G+I
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 63  P------PCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKIL------EIFEFTTK 110
           P      P      L  +   GS   P E   L   + ++ +   L      EI      
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGS--LPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQAL 722

Query: 111 NIAYTYQGRV----------VSYLSGLDLSCNKLICHISPQIGNLTRIQT-LNLSHNDLI 159
           N     + ++          +S L  L LS N L   I  +IG L  +Q+ L+LS+N+  
Sbjct: 723 NALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFT 782

Query: 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFAT 219
           G IPST S L  +ESLDLS+NQL G++P Q+ ++ +L   ++++NNL GK+ +   QF+ 
Sbjct: 783 GRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSR 839

Query: 220 FSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEMII 257
           +   ++ GN  LCG PL  C    +  + S + K ++I
Sbjct: 840 WQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVI 877

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 128/256 (50%), Gaps = 41/256 (16%)

Query: 8   NRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP---- 63
           N+L G IP  +  +S+LS+L L  N L GK+P +L +L QL  L+L+NNNL GLIP    
Sbjct: 322 NKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNIS 381

Query: 64  --PCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                +   +H ++ +G+   P E   L    Y       L +   + K       G ++
Sbjct: 382 SCAALNQFNVHGNFLSGAV--PLEFRNLGSLTY-------LNLSSNSFKGKIPAELGHII 432

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN- 180
           + L  LDLS N     I   +G+L  +  LNLS N L GT+P+ F NL+ I+ +D+S+N 
Sbjct: 433 N-LDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNF 491

Query: 181 -----------------------QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQF 217
                                  +++GKIP QL    +LA  +++ NNLSG IP     F
Sbjct: 492 LAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPP-MKNF 550

Query: 218 ATFSESSYEGNHFLCG 233
             FS +S+ GN FLCG
Sbjct: 551 TRFSPASFFGNPFLCG 566

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
224070714	572	predicted protein [Populus trichocarpa]	0.918	0.412	0.525	9e-62
224134609	676	predicted protein [Populus trichocarpa]	0.918	0.349	0.513	5e-59
224112233	976	leucine rich repeat family protein with	0.918	0.241	0.505	6e-59
224112253	580	predicted protein [Populus trichocarpa]	0.910	0.403	0.501	2e-58
224134597	947	predicted protein [Populus trichocarpa]	0.918	0.249	0.513	3e-58
224106948	658	predicted protein [Populus trichocarpa]	0.918	0.358	0.501	6e-58
224112245	876	predicted protein [Populus trichocarpa]	0.902	0.264	0.507	1e-57
224073382	1309	predicted protein [Populus trichocarpa]	0.918	0.180	0.523	1e-56
224142721	926	predicted protein [Populus trichocarpa]	0.918	0.254	0.501	1e-56
224106950	863	predicted protein [Populus trichocarpa]	0.918	0.273	0.490	2e-56

>gi|224070714|ref|XP_002303210.1| predicted protein [Populus trichocarpa] gi|222840642|gb|EEE78189.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/253 (52%), Positives = 170/253 (67%), Gaps = 17/253 (6%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L GSIP  +D LS L  L+L++NNLEG++P+QLCRL+QL L+DLS+N+L G I
Sbjct: 268 LDLSHNNLTGSIPKWIDKLSNLRFLLLSYNNLEGEIPIQLCRLDQLTLIDLSHNHLSGNI 327

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                        S   S  PF   +   + Y Y      + FEFTTKN++ +Y+G ++ 
Sbjct: 328 ------------LSWMISSHPFPQQY---DSYDYLSSS-QQSFEFTTKNVSLSYRGSIIQ 371

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           Y +G+D SCN  I  I P+IGNL+ I+ LNLSHN L G IP TFSNLK IESLDLSYN+L
Sbjct: 372 YFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKL 431

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-ICRS 241
           +G+IP +L EL +L  FSVAHNNLSGK P   AQFATF ES Y+ N FLCG PLP IC +
Sbjct: 432 DGEIPPRLTELFSLEFFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGA 491

Query: 242 PVTMLKASTTNKE 254
            +  +  ++TN E
Sbjct: 492 AMPPMTPTSTNNE 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134609|ref|XP_002327446.1| predicted protein [Populus trichocarpa] gi|222836000|gb|EEE74421.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L GSIP  +D LS L  L+L++NNLEG++P++LCRL+QL L+DLS+N+L G I
Sbjct: 375 LDLSHNNLTGSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHLSGNI 434

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                        S   S  PF   +   + Y Y      + FEFTTKN++ +Y+G ++ 
Sbjct: 435 ------------LSWMISSHPFPQEY---DSYDYLSSS-QQSFEFTTKNVSLSYRGNIIQ 478

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           Y +G+D SCN  I  I P+IGNL+ I+ LNLSHN L G IP TFSNLK IESLDLSYN+L
Sbjct: 479 YFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKL 538

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-ICRS 241
           +G+IP QL+EL +L  FSVAHNNLSGK     AQF+TF ES Y+ N FLCG PLP +C +
Sbjct: 539 DGEIPPQLIELFSLEFFSVAHNNLSGKTLARVAQFSTFEESCYKDNPFLCGEPLPKMCGA 598

Query: 242 --PVTMLKASTTNKE 254
             P++    ST N++
Sbjct: 599 AMPLSPTPTSTNNED 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 129/255 (50%), Positives = 169/255 (66%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L G IP+ +D LS L  L+L++NNLEG++P+ L RL+QL L+DLS+N+L G I
Sbjct: 664 LDLSHNDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIHLYRLDQLTLIDLSHNHLSGNI 723

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                +T                 +F V+N Y        + FEFTTKN++ +Y+G ++ 
Sbjct: 724 LSWMISTY----------------NFPVENTYYDSLSSSQQSFEFTTKNVSLSYRGNIIW 767

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           Y  G+D SCN     I P+IGNL+ ++ LNLSHN+L G IP TFSNLK IESLDLSYN+L
Sbjct: 768 YFIGIDFSCNNFTGQIPPEIGNLSMLKVLNLSHNNLTGPIPPTFSNLKEIESLDLSYNKL 827

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-ICRS 241
           +G+IP +L+EL +L VFSVAHNNLSGK P   AQFATF ES Y+ N FLCG PLP IC +
Sbjct: 828 DGEIPPRLIELFSLEVFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGA 887

Query: 242 --PVTMLKASTTNKE 254
             P +    ST N++
Sbjct: 888 AMPPSPTPTSTNNED 902

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112253|ref|XP_002332817.1| predicted protein [Populus trichocarpa] gi|222833211|gb|EEE71688.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 171/261 (65%), Gaps = 27/261 (10%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           + LDLS+N L GSIP  +D LS L  L+L+ NNLEG++P++LCRL+QL L+DLS+N+L G
Sbjct: 266 LALDLSHNNLTGSIPKWIDRLSNLRFLLLSSNNLEGEIPIRLCRLDQLTLIDLSHNHLSG 325

Query: 61  LIPPCFDNT----TLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
            I     +T      ++SY + SS +                    + FEFTTKN++ +Y
Sbjct: 326 NILSWMISTHPFPQQYDSYDDLSSSQ--------------------QSFEFTTKNVSLSY 365

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
           +G ++ Y +G+D SCN  I  I P+IGNL+ I+ LNLSHN L G IP TFSNLK IESLD
Sbjct: 366 RGSIIQYFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLD 425

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP- 235
           LSYN+L+G+IP QL+EL  L  FSVAHNNLSGK     AQFATF ES Y+ N FLCG P 
Sbjct: 426 LSYNKLDGEIPPQLIELFFLEFFSVAHNNLSGKTLARVAQFATFEESCYKDNPFLCGEPL 485

Query: 236 LPICRS--PVTMLKASTTNKE 254
           L IC +  P + +  ST N++
Sbjct: 486 LKICGTTMPPSPMPTSTNNED 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/255 (51%), Positives = 169/255 (66%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L GSIP  +D LS L  L+L++NNLEG++P++LCRL+QL L+DLS+N+  G I
Sbjct: 645 LDLSHNNLTGSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSGNI 704

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                        S   S  PF   +   N Y+   +   + FEFTTKN++ +Y+G ++ 
Sbjct: 705 ------------LSWMISSHPFPQQY-DSNDYLSSSQ---QSFEFTTKNVSLSYRGSIIQ 748

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           Y +G+D SCN  I  I P+IGNL+ I+ LNLSHN L G IP TFSNLK IESLDLSYN+L
Sbjct: 749 YFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKL 808

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP-LPICRS 241
           +G+IP QL+EL  L  FSVAHNNLSGK     AQFATF ES Y+ N FLCG P L IC +
Sbjct: 809 DGEIPPQLIELFFLEFFSVAHNNLSGKTLARVAQFATFEESCYKDNPFLCGEPLLKICGT 868

Query: 242 --PVTMLKASTTNKE 254
             P + +  ST N++
Sbjct: 869 TMPPSPMPTSTNNED 883

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 128/255 (50%), Positives = 167/255 (65%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L G IP+ +  LS L  L+L++NNLEG++P++LCRL+QL ++DLS+N L G I
Sbjct: 353 LDLSHNDLTGRIPEWIGRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNI 412

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                        S   S  PF   +   +     ++     FEFTTKN++  Y+G ++ 
Sbjct: 413 ------------LSWMISTHPFPFQYNSHDSMFSSQQS----FEFTTKNVSLPYKGSIIQ 456

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           YL G+D SCN    +I P+IGNL++I+ LNLSHN L G IP TF NLK IESLDLSYN+L
Sbjct: 457 YLIGIDFSCNNFTGNIPPEIGNLSKIKALNLSHNSLTGPIPPTFWNLKEIESLDLSYNKL 516

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-ICRS 241
           +G+IP +L EL +L VFSVAHNNLSGK P   AQFATF ES Y+ N FLCG PLP IC +
Sbjct: 517 DGEIPPRLTELFSLEVFSVAHNNLSGKTPARVAQFATFDESCYKDNPFLCGEPLPKICAA 576

Query: 242 --PVTMLKASTTNKE 254
             P +    ST N++
Sbjct: 577 VMPPSSTPTSTNNED 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/252 (50%), Positives = 170/252 (67%), Gaps = 20/252 (7%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           + LDLS+N L G+IP+ +  LS+L +L+L++N LEG++P+QLC+L+ L L+DLS+N+L G
Sbjct: 590 LTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSG 649

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
            I  C             +SL PF  S L     +   ++ LE   FTTKN++  Y+G +
Sbjct: 650 NILSCM------------TSLAPF--SALTDATIVETSQQYLE---FTTKNVSLIYRGSI 692

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
           V   SG+D SCN     I P+I NL++I+ LNLSHN LIG IP TFS LK IESLDLS+N
Sbjct: 693 VKLFSGIDFSCNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHN 752

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-IC 239
           +L+G+IP QL EL +L +FSVAHNNLSGK P   AQFATF ES Y+ N FLCG PLP IC
Sbjct: 753 KLDGEIPPQLTELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKIC 812

Query: 240 RSPVTMLKASTT 251
            +  +ML + T+
Sbjct: 813 GA--SMLPSPTS 822

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/254 (52%), Positives = 164/254 (64%), Gaps = 18/254 (7%)

Query: 1    MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            + +DL  N   GSIP+ V  LS LS L+L  N+L+G++PVQLC L QL +LD+S N L G
Sbjct: 965  VTMDLRDNSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSG 1024

Query: 61   LIPPCFDNTTLHESYSN-----GSSLKP--FETSF-------LVKNIYI----YREKKIL 102
             +P C +N T  ES        G  L P   E ++        V +IY     Y      
Sbjct: 1025 PLPSCLENLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTE 1084

Query: 103  EIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI 162
            E+ EFTTKN+ Y Y+G+++SY+SG+DLS N  +  I P+ GNL+ I +LNLSHN+L G+I
Sbjct: 1085 EVIEFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSI 1144

Query: 163  PSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSE 222
            P+TFSNLK IESLDLSYN  NG IP QL E+ TL VFSVAHNNLSGK PE   QF TF E
Sbjct: 1145 PATFSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDE 1204

Query: 223  SSYEGNHFLCGLPL 236
            S YEGN FLCG PL
Sbjct: 1205 SCYEGNPFLCGPPL 1218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/255 (50%), Positives = 166/255 (65%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L G IP  +D LS L  L+L++NNLEG++P+QL RL+QL L+DLS+N+L G I
Sbjct: 621 LDLSHNNLTGRIPKWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLSHNHLSGNI 680

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                +T                 +F V++ Y        + FEFTTKN++ +Y+G ++ 
Sbjct: 681 LSWMISTH----------------NFPVESTYFDFLAISHQSFEFTTKNVSLSYRGDIIW 724

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           Y  G+D SCN     I P+IGNL+ I+ LNLSHN L G IP TFSNLK IESLDLSYN+L
Sbjct: 725 YFKGIDFSCNNFTGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKL 784

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-ICRS 241
           +G+IP +L EL +L VFSVAHNNLSG  P   AQFATF E+ Y+ N FLCG PLP IC +
Sbjct: 785 DGEIPPRLTELFSLEVFSVAHNNLSGNTPVRVAQFATFEENCYKDNPFLCGEPLPKICGA 844

Query: 242 PV--TMLKASTTNKE 254
            +  +    ST NK+
Sbjct: 845 AMSPSPTPTSTNNKD 859

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/255 (49%), Positives = 164/255 (64%), Gaps = 19/255 (7%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS+N L G IP+ +D LS L  L+L++NNLEG++P++LCRL+QL ++DLS+N L G I
Sbjct: 589 LDLSHNDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNI 648

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                +T             PF   +       Y      + FEFT KN+++ Y+G ++ 
Sbjct: 649 LSWMIST------------HPFPIQYNSH----YSMFSSQQSFEFTIKNVSFPYKGSIIQ 692

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           YL+G+D SCN     I P+IGNL +I+ LNLSHN L G I STFSNLK IESLDLSYN+L
Sbjct: 693 YLTGIDFSCNNFTGEIPPEIGNLNKIKALNLSHNSLTGPIQSTFSNLKEIESLDLSYNKL 752

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL-PICRS 241
           +G+IP +L+EL +L  FSV HNNLSGK P   AQFATF ES Y+ N FLCG PL  IC +
Sbjct: 753 DGEIPPRLIELFSLEFFSVTHNNLSGKTPARVAQFATFEESCYKDNLFLCGEPLTKICGA 812

Query: 242 --PVTMLKASTTNKE 254
             P +    S  N++
Sbjct: 813 AMPSSSTPTSRNNED 827

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.929	0.239	0.376	8.4e-38
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.898	0.236	0.417	2e-37
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.906	0.241	0.378	5.9e-32
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.859	0.236	0.402	6.5e-31
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.501	0.144	0.515	6.8e-31
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.552	0.131	0.472	5.8e-30
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.583	0.187	0.452	6.3e-30
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.583	0.165	0.446	7e-30
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.494	0.157	0.488	4e-27
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.463	0.177	0.483	2e-25

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 8.4e-38, Sum P(2) = 8.4e-38
 Identities = 96/255 (37%), Positives = 140/255 (54%)

Query:     1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHG 60
             ++LDL  NRL+G++P+ ++    +S L+L  NN  G++P                   +G
Sbjct:   646 IVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNG 704

Query:    61 LIPPCFDNTTL-----HESYSN------GSSLKP--FETSFLVKNIYIYREKKILEIFEF 107
              IP C  NT+       +SY        G++  P  FE+  ++    +  E       EF
Sbjct:   705 SIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEF 764

Query:   108 TTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167
              TK+    Y G  +  L G+DLS N+L   I  ++G L  ++ LNLSHN+L G I  +FS
Sbjct:   765 ATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFS 824

Query:   168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEG 227
              LK++ESLDLS+N+L G IPLQL ++ +LAVF+V++NNLSG +P+   QF TF   SY G
Sbjct:   825 GLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFG 883

Query:   228 NHFLCGLPLPI-CRS 241
             N  LCG  + I C S
Sbjct:   884 NPLLCGKSIDISCAS 898

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 2.0e-37, P = 2.0e-37
 Identities = 104/249 (41%), Positives = 143/249 (57%)

Query:     2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHGL 61
             ILDL  N+L+GSIP  V+   ++  L+L  NNL G +P                   +G+
Sbjct:   650 ILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGV 708

Query:    62 IPPCFDN--TTLHESY---------SNGSSLKP--FETSFLVKNIYIYREKK--ILEIFE 106
             IPPC ++  T L E           S G SL+   + ++FLV    +Y +    I+EI E
Sbjct:   709 IPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEI-E 767

Query:   107 FTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTF 166
             F  K    ++ G  + Y+ GLDLS N+L   I  ++G+L++++ LNLS N L  +IP+ F
Sbjct:   768 FAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANF 827

Query:   167 SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE 226
             S LK IESLDLSYN L G IP QL  L +LAVF+V+ NNLSG IP+   QF TF+++SY 
Sbjct:   828 SKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYL 886

Query:   227 GNHFLCGLP 235
             GN  LCG P
Sbjct:   887 GNPLLCGTP 895

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 5.9e-32, P = 5.9e-32
 Identities = 90/238 (37%), Positives = 125/238 (52%)

Query:     2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VXXXXXXXXXXXXXXXXXXHG 60
             IL L  N   G IP  + GLS +  L L++N L G +P                     G
Sbjct:   655 ILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFG 714

Query:    61 LIPPC--FDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI-FEFTTKNIAYTYQ 117
             +  P   F+  +LH+ +S+  +   +  S L  +      K   +   EF TK+    Y 
Sbjct:   715 ISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYM 774

Query:   118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
             G  +  L G+DLS N+L   I  + G L  ++ LNLSHN+L G IP + S+++ +ES DL
Sbjct:   775 GGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDL 834

Query:   178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235
             S+N+L G+IP QL EL +L+VF V+HNNLSG IP+   QF TF   SY GN  LCG P
Sbjct:   835 SFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGR-QFNTFDAESYFGNRLLCGQP 891

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 6.5e-31, P = 6.5e-31
 Identities = 97/241 (40%), Positives = 130/241 (53%)

Query:     2 ILDLSYNRLNGSIP-DLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHG 60
             IL L  N L GSIP +L D LS +  L L+ N L G +P                     
Sbjct:   631 ILLLKGNNLTGSIPRELCD-LSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALN-- 687

Query:    61 LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR- 119
              IPP F  T+L         ++ ++++FLV  I + R        +F  K    +Y GR 
Sbjct:   688 -IPPSFLQTSLE--------MELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRS 738

Query:   120 -----VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
                  ++  + G+DLS N+L   I  ++G+L +++TLNLSHN L+G+IPS+FS L  +ES
Sbjct:   739 EFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVES 798

Query:   175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL 234
             LDLS+N L G IP  L  L +LAVF V+ NNLSG IP+   QF TF E SY GN  LCG 
Sbjct:   799 LDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLCGP 857

Query:   235 P 235
             P
Sbjct:   858 P 858

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 67/130 (51%), Positives = 89/130 (68%)

Query:   106 EFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPST 165
             EF  K     Y    ++ + GLDLS N+L  +I  ++G+L R+++LNLS N L G+IP +
Sbjct:   686 EFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGS 745

Query:   166 FSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSY 225
             FSNL+ IESLDLS+N+L+G IP QL  L +L VF+V++NNLSG IP+   QF TF E SY
Sbjct:   746 FSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSY 804

Query:   226 EGNHFLCGLP 235
              GN  LCG P
Sbjct:   805 LGNFLLCGSP 814

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query:    90 VKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQ 149
             V+N Y   + K   + +F TK+    YQG ++ Y+ GLDLS N+L   I  +IG+L  I+
Sbjct:   855 VRNGY---QPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIR 911

Query:   150 TLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGK 209
             +LNLS N L G+IP + S LK +ESLDLS N+L+G IP  L +LN+L   ++++NNLSG+
Sbjct:   912 SLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGE 971

Query:   210 IPEWTAQFATFSESSYEGNHFLCGLP 235
             IP +     TF E SY GN  LCGLP
Sbjct:   972 IP-FKGHLVTFDERSYIGNAHLCGLP 996

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
 Identities = 71/157 (45%), Positives = 95/157 (60%)

Query:    93 IYIYREKKILEIFEFTTKNIAYT----YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRI 148
             IY+   K    I+E  T ++ Y      QG+V+++ S +D S NKL   I   IG L  +
Sbjct:   560 IYMGDYKNAYYIYE-DTMDLQYKGLFMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKEL 618

Query:   149 QTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
               LNLS+N   G IP + +N+  +ESLDLS NQL+G IP +L  L+ LA  SVAHN L G
Sbjct:   619 IALNLSNNAFTGHIPMSLANVTELESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKG 678

Query:   209 KIPEWTAQFATFSESSYEGNHFLCGLPLP-ICRSPVT 244
             +IP+   QF+  +ESS+EGN  LCGLPL   C +P T
Sbjct:   679 EIPQGP-QFSGQAESSFEGNVGLCGLPLQGSCVAPPT 714

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.0e-30, Sum P(2) = 7.0e-30
 Identities = 71/159 (44%), Positives = 102/159 (64%)

Query:    84 FETSFLVKNIYI-YREKKILEIFEFTTKNIAYTYQGR------VVSYLSGLDLSCNKLIC 136
             ++++F+V+N  + Y     +++ +F TK    +Y G        ++ + GLDLS N+L  
Sbjct:   675 YKSTFVVENFRLDYSNYFEIDV-KFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSG 733

Query:   137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL 196
              I  ++G+L +++ LNLSHN L   IP +FS L+ IESLDLSYN L G IP QL  L +L
Sbjct:   734 VIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSL 793

Query:   197 AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235
             A+F+V++NNLSG IP+   QF TF E+SY GN  LCG P
Sbjct:   794 AIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPP 831

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
 Identities = 63/129 (48%), Positives = 81/129 (62%)

Query:   117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
             QG+V++  + +D S NKL   I   IG L  +  LNLS+N   G IP + +N+  +ESLD
Sbjct:   597 QGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLD 656

Query:   177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
             LS NQL+G IP  L  L+ LA  SVAHN L G+IP+ T Q    S+SS+EGN  LCGLPL
Sbjct:   657 LSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGT-QITGQSKSSFEGNAGLCGLPL 715

Query:   237 P-ICRSPVT 244
                C +P T
Sbjct:   716 QGSCFAPPT 724

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
 Identities = 58/120 (48%), Positives = 77/120 (64%)

Query:   117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
             Q RV++  S +D S N L  +I   IG L  +  LNLS+N   G IP + +NLK ++SLD
Sbjct:   484 QARVLTSYSAIDFSRNLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQSLD 543

Query:   177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
             +S NQL+G IP  L +L+ LA  SV+HN L G+IP+ T Q     +SS+EGN  LCGLPL
Sbjct:   544 MSRNQLSGTIPNGLKQLSFLAYISVSHNQLKGEIPQGT-QITGQLKSSFEGNVGLCGLPL 602

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030160 hypothetical protein (573 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.5 bits (240), Expect = 1e-22
 Identities = 86/269 (31%), Positives = 127/269 (47%), Gaps = 38/269 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE------------------------GK 37
           +LDLS N L G IP+ +     L  LIL  N+LE                        G+
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 38  VPVQLCRLNQLQLLDLSNNNLHGLI-PPCFDNTTLHE-SYSNGSSLKPFETSFLVKNIYI 95
           +P +  +L  +  LD+SNNNL G I    +D  +L   S +          SF  K +  
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL-- 477

Query: 96  YREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH 155
             E   L   +F+    A   +   +S L  L LS NKL   I  ++ +  ++ +L+LSH
Sbjct: 478 --ENLDLSRNQFSG---AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 156 NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTA 215
           N L G IP++FS +  +  LDLS NQL+G+IP  L  + +L   +++HN+L G +P  T 
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TG 591

Query: 216 QFATFSESSYEGNHFLCG----LPLPICR 240
            F   + S+  GN  LCG      LP C+
Sbjct: 592 AFLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 1e-21
 Identities = 80/255 (31%), Positives = 112/255 (43%), Gaps = 37/255 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS N L+G IP+ +   S L  L L  N L GK+P  L  L  L+ L L++N L G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 63  PPCFDNTT----LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
           P           ++  Y+N S   P+E                                G
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEI-------------------------------G 233

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
            + S L+ LDL  N L   I   +GNL  +Q L L  N L G IP +  +L+ + SLDLS
Sbjct: 234 GLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238
            N L+G+IP  +++L  L +  +  NN +GKIP                N F   +P  +
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 239 C-RSPVTMLKASTTN 252
              + +T+L  ST N
Sbjct: 353 GKHNNLTVLDLSTNN 367

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.1 bits (226), Expect = 9e-21
 Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 28/211 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L+ N+L G IP  +  +  L  + L +NNL G++P ++  L  L  LDL  NNL G 
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           IP    N            LK  +  FL +N           IF                
Sbjct: 252 IPSSLGN------------LKNLQYLFLYQNKLSGPIPP--SIFSLQK------------ 285

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  LDLS N L   I   +  L  ++ L+L  N+  G IP   ++L  ++ L L  N+
Sbjct: 286 --LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            +G+IP  L + N L V  ++ NNL+G+IPE
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.1 bits (221), Expect = 4e-20
 Identities = 78/251 (31%), Positives = 117/251 (46%), Gaps = 25/251 (9%)

Query: 2   ILDLSYNRLNGSIPDLVDGLS-QLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            ++LS N+L+G IPD +   S  L +L L++NN  G +P     +  L+ LDLSNN L G
Sbjct: 97  TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSG 154

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFET--SFLVKNIYIYREK-KILEIFEFTTKNIAYTYQ 117
            IP             + SSLK  +   + LV  I         LE     +  +     
Sbjct: 155 EIP---------NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV---- 201

Query: 118 GRVVSYLSGLD------LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
           G++   L  +       L  N L   I  +IG LT +  L+L +N+L G IPS+  NLK+
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 172 IESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL 231
           ++ L L  N+L+G IP  +  L  L    ++ N+LSG+IPE   Q           N+F 
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 232 CGLPLPICRSP 242
             +P+ +   P
Sbjct: 322 GKIPVALTSLP 332

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 6e-20
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRL-NQLQLLDLSNNNLHGL 61
           +DLS   ++G I   +  L  +  + L++N L G +P  +    + L+ L+LSNNN  G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           IP                S+   ET  L  N  +   +   +I  F              
Sbjct: 134 IP--------------RGSIPNLETLDLSNN--MLSGEIPNDIGSF-------------- 163

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           S L  LDL  N L+  I   + NLT ++ L L+ N L+G IP     +K ++ + L YN 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
           L+G+IP ++  L +L    + +NNL+G IP
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.1 bits (213), Expect = 4e-19
 Identities = 69/211 (32%), Positives = 94/211 (44%), Gaps = 12/211 (5%)

Query: 5   LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP 64
           L YN L+G IP  + GL+ L+HL L +NNL G +P  L  L  LQ L L  N L G IPP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 65  C-FDNTTLHESYSNGSSLKPFETSFLVKNI-YIYREKKILEIFEFTTKNIAYTYQGRVVS 122
             F    L        SL     + L   I  +  + + LEI    + N        + S
Sbjct: 279 SIFSLQKL-------ISLD-LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 123 Y--LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L L  NK    I   +G    +  L+LS N+L G IP    +  ++  L L  N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
            L G+IP  L    +L    +  N+ SG++P
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 8/122 (6%)

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           ++ GL L    L   I   I  L  +Q++NLS N + G IP +  ++  +E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTA----QFATFSESSYEGNHFLCGLP-LP 237
           NG IP  L +L +L + ++  N+LSG++P          A+F   ++  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIPGLR 535

Query: 238 IC 239
            C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 123 YLSGLDLSCNKLICHISPQIGNLT-RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           Y+  ++LS N+L   I   I   +  ++ LNLS+N+  G+IP     + ++E+LDLS N 
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNM 151

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235
           L+G+IP  +   ++L V  +  N L GKIP       +    +   N  +  +P
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 28/64 (43%), Positives = 36/64 (56%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           M L LS N+L+G IPD +    +L  L L+HN L G++P     +  L  LDLS N L G
Sbjct: 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561

Query: 61  LIPP 64
            IP 
Sbjct: 562 EIPK 565

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L    L G IP+ +  L  L  + L+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 63  PPCFDN-TTLHESYSNGSSL 81
           P      T+L     NG+SL
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           ++LS N + G+IP  +  ++ L  L L++N+  G +P  L +L  L++L+L+ N+L G +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 63  PPCFDNTTLHESYSN 77
           P       LH +  N
Sbjct: 507 PAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQL 42
           +LDLSYN  NGSIP+ +  L+ L  L L  N+L G+VP  L
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 144 NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVEL-NTLAVFSVA 202
           N +R+ +++LS  ++ G I S    L +I++++LS NQL+G IP  +    ++L   +++
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 203 HNNLSGKIP 211
           +NN +G IP
Sbjct: 127 NNNFTGSIP 135

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 58/148 (39%)

Query: 17  LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYS 76
            +DGL       L +  L G +P  + +L  LQ ++LS N++ G IPP   +        
Sbjct: 419 FIDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-------- 464

Query: 77  NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
                                                       ++ L  LDLS N    
Sbjct: 465 --------------------------------------------ITSLEVLDLSYNSFNG 480

Query: 137 HISPQIGNLTRIQTLNLSHNDLIGTIPS 164
            I   +G LT ++ LNL+ N L G +P+
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 25/58 (43%), Positives = 27/58 (46%)

Query: 1  MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNL 58
            LDLS NRL         GL  L  L L+ NNL    P     L  L+ LDLS NNL
Sbjct: 3  KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 127 LDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           LDLS N+L   I       L  ++ L+LS N+L    P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNL 206
            +++L+LS+N L       F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 19/193 (9%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDL  N +    P +    S L  L L+ N +E  +P  L  L  L+ LDLS N+L  L
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL 178

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKN----IYIYREKKILEIFEFTTKNIAYTYQ 117
                + + L+    +G+ +        + +    + +     I  +   +         
Sbjct: 179 PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNL------- 231

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 LSGL+LS NKL       IGNL+ ++TL+LS+N    +  S+  +L ++  LDL
Sbjct: 232 ----KNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNN--QISSISSLGSLTNLRELDL 284

Query: 178 SYNQLNGKIPLQL 190
           S N L+  +PL  
Sbjct: 285 SGNSLSNALPLIA 297

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
PLN03150	623	hypothetical protein; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
PLN03150	623	hypothetical protein; Provisional	99.19
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.77
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.42
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.82
smart00370	26	LRR Leucine-rich repeats, outliers.	93.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.92
smart00370	26	LRR Leucine-rich repeats, outliers.	92.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.97
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	90.73
KOG4308	478	consensus LRR-containing protein [Function unknown	89.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.15
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.64
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.7

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=2.6e-25  Score=206.00  Aligned_cols=243  Identities=30%  Similarity=0.393  Sum_probs=123.2

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~   80 (257)
                      +|+|++|.+.+..|..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.... +..+....+.
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            445555555545555555555555555555555555555555555555555555555544444333222 2233333222


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      +...       ....+..+..++.+++..+.+.....  ...+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       224 l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        224 LSGE-------IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             cCCc-------CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            2210       01111223334444444443321111  11244556666666655555555555556666666666665


Q ss_pred             ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153          159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI  238 (257)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  238 (257)
                      .+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++++|.+.+..|..+
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence            55555555555666666666666655555555556666666666666655556555556666666666666555555544


Q ss_pred             cc-CcccccccccC
Q 048153          239 CR-SPVTMLKASTT  251 (257)
Q Consensus       239 ~~-~~l~~l~~~~~  251 (257)
                      |. ..++.|+++.|
T Consensus       377 ~~~~~L~~L~l~~n  390 (968)
T PLN00113        377 CSSGNLFKLILFSN  390 (968)
T ss_pred             hCcCCCCEEECcCC
Confidence            43 34444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=3.4e-24  Score=198.64  Aligned_cols=253  Identities=27%  Similarity=0.355  Sum_probs=161.2

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      +.|+|++|++.+..|..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+... .+..+....+
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            467788888877777778888888888888888777777777788888888888887776666544332 2333333333


Q ss_pred             CCCCCcchhh-----------------hhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCC
Q 048153           80 SLKPFETSFL-----------------VKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISP  140 (257)
Q Consensus        80 ~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~  140 (257)
                      .+.......+                 .........+..++.+.+..+.+.....  ...+++|+.|++++|.+.+..|.
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            3221100000                 0001112233344444444444322111  11245677777777777666666


Q ss_pred             CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCC
Q 048153          141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATF  220 (257)
Q Consensus       141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L  220 (257)
                      ++..+++|+.+++++|.+.+..|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+.+.+|..+..+++|
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence            66666777777777777766677777777777777777777777777777777777777777777777777766677777


Q ss_pred             CeeccccCcccccCCCCCccCcccccccccCCc
Q 048153          221 SESSYEGNHFLCGLPLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       221 ~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~  253 (257)
                      +.+++++|.+.+..|.......++.|+++.|..
T Consensus       455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l  487 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF  487 (968)
T ss_pred             cEEECcCceeeeecCcccccccceEEECcCCcc
Confidence            777777777776666655556666677666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.2e-25  Score=184.32  Aligned_cols=256  Identities=19%  Similarity=0.181  Sum_probs=177.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecc--------------------
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG--------------------   60 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------   60 (257)
                      +.||+++|+++++.++.|.++++|+.+++..|.++ .+|..-....+++.|++.+|.++.                    
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            36999999999988899999999999999999888 566533333345555555555543                    


Q ss_pred             ----cCCCCCcC-CcccccccCCCCCCCCcchhhhh-----------------hhhhhhcccchhhcccccccccccccc
Q 048153           61 ----LIPPCFDN-TTLHESYSNGSSLKPFETSFLVK-----------------NIYIYREKKILEIFEFTTKNIAYTYQG  118 (257)
Q Consensus        61 ----~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~  118 (257)
                          +....|.. ..+..+....+.++.+....+..                 ....+..+++|+.+++..+.+......
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence                33333322 33455555555554433322221                 134456667777888877776655322


Q ss_pred             --ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCC
Q 048153          119 --RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL  196 (257)
Q Consensus       119 --~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  196 (257)
                        ..+++|+.+.+..|.+.......|..+.++++|+++.|.++.....++.++++|+.|++++|+|..+.++.....++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence              336777888888888876667777888888888888888887777777788888888888888877777777777888


Q ss_pred             CEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCccccC
Q 048153          197 AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKEMII  257 (257)
Q Consensus       197 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~  257 (257)
                      +.|+|+.|+++...+.++..+..|++|+++.|.+.---...+ |-.+|..||++.|...|+|
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            888888888887777777777778888888887654322233 6677777877777766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=4.6e-24  Score=176.65  Aligned_cols=253  Identities=20%  Similarity=0.167  Sum_probs=154.0

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~~~   79 (257)
                      |+|||+.|.|+.+...+|..-.++++|++++|+++......|..+.+|.+|.++.|+++.+++..|.. ..+..+....+
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            34566666666544455555556666666666666555555666666666666666666555555542 23444444444


Q ss_pred             CCCCCcchhhhhh-----------------hhhhhcccchhhccccccccccc--cccccccccceEEcccCccccccCC
Q 048153           80 SLKPFETSFLVKN-----------------IYIYREKKILEIFEFTTKNIAYT--YQGRVVSYLSGLDLSCNKLICHISP  140 (257)
Q Consensus        80 ~l~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~L~~L~ls~n~~~~~~~~  140 (257)
                      .+....+..+...                 ...+-...+++.++++.+.+...  .....++.|++|++|+|.+..+.++
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            4433322221100                 00111222444455554443322  2223366777788888887777777


Q ss_pred             CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC---Chhhhhc
Q 048153          141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI---PEWTAQF  217 (257)
Q Consensus       141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~~  217 (257)
                      .+..+++|+.|+++.|.++...+.+|..+..|++|++++|++....-..|..+.+|+.|||++|.+...+   ...+..+
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            7777778888888888887777777777778888888888777555566777788888888888876432   2345567


Q ss_pred             cCCCeeccccCcccccCCCCCc--cCcccccccccCCcc
Q 048153          218 ATFSESSYEGNHFLCGLPLPIC--RSPVTMLKASTTNKE  254 (257)
Q Consensus       218 ~~L~~l~l~~n~~~~~~~~~~~--~~~l~~l~~~~~~~~  254 (257)
                      ++|+.|.+.||.+. .+|..-.  .+.|+.||+.+|-.-
T Consensus       392 ~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             hhhhheeecCceee-ecchhhhccCcccceecCCCCcce
Confidence            88888888888743 3554442  378888888777543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=7.9e-22  Score=156.42  Aligned_cols=237  Identities=19%  Similarity=0.209  Sum_probs=164.1

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccC-ceecccCCCCCcCCc-ccccccCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSN-NNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      .++|..|+|+.+.+.+|+.+++|+.|||++|.++.+-|++|.+++++..|.+++ |+|+.++.+.|..+. +..+..+-+
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence            478999999988899999999999999999999999999999999999887776 999988888887654 222222222


Q ss_pred             CCCCCcchhhhhh----------------hh-hhhcccchhhccccccc-------------------------------
Q 048153           80 SLKPFETSFLVKN----------------IY-IYREKKILEIFEFTTKN-------------------------------  111 (257)
Q Consensus        80 ~l~~~~~~~~~~~----------------~~-~~~~~~~l~~~~~~~~~-------------------------------  111 (257)
                      .+..+....+...                -+ .+..+...+.+-...+.                               
T Consensus       151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r  230 (498)
T KOG4237|consen  151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR  230 (498)
T ss_pred             hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence            2221111100000                00 00000011111111110                               


Q ss_pred             -----cccccccccccccceE--Ec-ccCccccccC-CCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153          112 -----IAYTYQGRVVSYLSGL--DL-SCNKLICHIS-PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL  182 (257)
Q Consensus       112 -----~~~~~~~~~~~~L~~L--~l-s~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  182 (257)
                           +..........+++.+  .+ +.+....+-| ..|..+++|++|++++|+++.+.+.+|.+..+++.|.+..|++
T Consensus       231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l  310 (498)
T KOG4237|consen  231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL  310 (498)
T ss_pred             HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence                 0000000111111111  11 1111222222 3578899999999999999999999999999999999999999


Q ss_pred             cccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153          183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI  238 (257)
Q Consensus       183 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  238 (257)
                      .......|.++..|++|+|.+|+++...|..+..+.+|.+|++-+|||.|.|-.-+
T Consensus       311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence            86667788999999999999999998889999999999999999999999987544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=1.1e-21  Score=164.39  Aligned_cols=247  Identities=26%  Similarity=0.324  Sum_probs=138.9

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL   81 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l   81 (257)
                      +|||+.|++. ..|..+...+++-.|++++|.+..+..+-|..+..|-+||+++|++..++|+.-....+..+..+.+.+
T Consensus       107 ~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  107 ILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            4667777766 566666666777777777777763333344566666677777777666555543322233333332222


Q ss_pred             CCCcchhh------------------hhhhhhhhcccchhhcccccccccccccc-ccccccceEEcccCccccccCCCc
Q 048153           82 KPFETSFL------------------VKNIYIYREKKILEIFEFTTKNIAYTYQG-RVVSYLSGLDLSCNKLICHISPQI  142 (257)
Q Consensus        82 ~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~  142 (257)
                      ..+.--..                  .........+.++.-++++.+.+...+.+ ..+++|+.|.+|+|.++ .+....
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~  264 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE  264 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccH
Confidence            11111000                  00111222333444555555554443333 12455666666666665 333344


Q ss_pred             CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc-CChhhhcCCCCCEEEccCCcccCCCChhhhhccCCC
Q 048153          143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK-IPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS  221 (257)
Q Consensus       143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  221 (257)
                      ..+.+|++|++++|+++ ..|+++..++.|+.|.+.+|+++-. +|..++.+.+|+.+..++|.++ .+|+++..|+.|+
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence            44556666666666666 5666666666666666666665421 4556666666667766666666 7777777777777


Q ss_pred             eeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153          222 ESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK  253 (257)
Q Consensus       222 ~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~  253 (257)
                      .|.++.|.+.. .|..+ ..+.++.||+..|..
T Consensus       343 kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  343 KLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             Hhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence            77777777554 56555 557777777766654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.78  E-value=4.1e-21  Score=152.87  Aligned_cols=238  Identities=21%  Similarity=0.339  Sum_probs=151.5

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL   81 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l   81 (257)
                      +|++.+|+++ ..|.+++.+..+..++.++|++. .+|..++.++++..++.++|.+....++......+..+....+++
T Consensus        72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i  149 (565)
T KOG0472|consen   72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQI  149 (565)
T ss_pred             EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccccc
Confidence            3555555555 44555555555566666666555 455555666666666666666655555555555555555555555


Q ss_pred             CCCcchhhhhhhhhhhcccchhhcccccccccccccc-ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                      ..++.....        ...+..+....+.+...... ..++.|++++...|.++ .+|+.++++.+|..|++.+|++. 
T Consensus       150 ~slp~~~~~--------~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-  219 (565)
T KOG0472|consen  150 SSLPEDMVN--------LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-  219 (565)
T ss_pred             ccCchHHHH--------HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence            555443321        11222222333322221111 11566888888888776 66677888888888888888888 


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhh-hcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQL-VELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC  239 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  239 (257)
                      ..| .|+++..|+.|+++.|+++ .+|... .+++++..||++.|+++ +.|.++.-+.+|.++|+++|.+.. .|...-
T Consensus       220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLg  295 (565)
T KOG0472|consen  220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLG  295 (565)
T ss_pred             cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccc
Confidence            455 7788888888888888887 555444 47888888888888887 788887778888888888888665 565555


Q ss_pred             cCcccccccccCCccc
Q 048153          240 RSPVTMLKASTTNKEM  255 (257)
Q Consensus       240 ~~~l~~l~~~~~~~~~  255 (257)
                      +.-++.|-+-+|..+.
T Consensus       296 nlhL~~L~leGNPlrT  311 (565)
T KOG0472|consen  296 NLHLKFLALEGNPLRT  311 (565)
T ss_pred             cceeeehhhcCCchHH
Confidence            5567777666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=6.1e-21  Score=135.63  Aligned_cols=173  Identities=27%  Similarity=0.428  Sum_probs=115.3

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK   82 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~   82 (257)
                      |-|++|+++ .+|..++.+.+|+.|++.+|+++ ..|..++.+++|++|++..|++. ..|..|+.              
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs--------------  100 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS--------------  100 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC--------------
Confidence            456666666 44555666677777777777766 56666666777777777666664 33443333              


Q ss_pred             CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccc-cccCCCcCCCCCcCEEeccCCccccC
Q 048153           83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLI-CHISPQIGNLTRIQTLNLSHNDLIGT  161 (257)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~  161 (257)
                                                            ++.|+.|++++|.+. ..+|..|-.+..|+.|+++.|.++ .
T Consensus       101 --------------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~  141 (264)
T KOG0617|consen  101 --------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-I  141 (264)
T ss_pred             --------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-c
Confidence                                                  566777777777765 345666777777777778887777 6


Q ss_pred             CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc---CCCeeccccCccccc
Q 048153          162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA---TFSESSYEGNHFLCG  233 (257)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~L~~l~l~~n~~~~~  233 (257)
                      .|..++.+++|+.|.++.|.+- .+|..++.+..|+.|.+.+|+++ -+|.+++++.   +=..+.+..|||...
T Consensus       142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            6667777777888888877776 67777777777788888888777 5555555442   223455666776653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=5.7e-20  Score=154.14  Aligned_cols=224  Identities=26%  Similarity=0.325  Sum_probs=171.7

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC---c--------
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT---T--------   70 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~--------   70 (257)
                      +|+|++|+|..+..+.|.++.-|-+||+++|++. .+|+....+..|++|.+++|++...--..+..+   .        
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            6899999999766678889999999999999998 788889999999999999998742211111111   1        


Q ss_pred             ---------------ccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccc-cccccccceEEcccCcc
Q 048153           71 ---------------LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ-GRVVSYLSGLDLSCNKL  134 (257)
Q Consensus        71 ---------------l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~ls~n~~  134 (257)
                                     +..++.+.+.+..++..        .-.+..+.-++++.+.+..... .....+|++|.+|.|.+
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec--------ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC--------LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCCCcchHH--------HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence                           11222222333322222        2233445556666666544322 23367899999999999


Q ss_pred             ccccCCCcCCCCCcCEEeccCCccc-cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChh
Q 048153          135 ICHISPQIGNLTRIQTLNLSHNDLI-GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW  213 (257)
Q Consensus       135 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  213 (257)
                      + .+|+.++.+++|+.|.+..|+++ .-+|.-++.+..|+.+..++|.+. ..|..++++..|+.|.|+.|++- .+|++
T Consensus       281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea  357 (1255)
T KOG0444|consen  281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA  357 (1255)
T ss_pred             c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence            8 88999999999999999999865 246778899999999999999998 89999999999999999999998 88999


Q ss_pred             hhhccCCCeeccccCcccccCCCC
Q 048153          214 TAQFATFSESSYEGNHFLCGLPLP  237 (257)
Q Consensus       214 ~~~~~~L~~l~l~~n~~~~~~~~~  237 (257)
                      +.-++.|..|+++.||-+--.|-+
T Consensus       358 IHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  358 IHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             hhhcCCcceeeccCCcCccCCCCc
Confidence            999999999999999877654543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=1.1e-20  Score=150.50  Aligned_cols=238  Identities=25%  Similarity=0.282  Sum_probs=187.3

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL   81 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l   81 (257)
                      .++++.|.+.. ..+.+.++..+.++.+.+|++. ..|++++.+..++.+++++|++...+++......+..+..+.+.+
T Consensus        49 ~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~  126 (565)
T KOG0472|consen   49 KLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL  126 (565)
T ss_pred             hhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence            36788999984 4556889999999999999998 688889999999999999999988777777777777777777776


Q ss_pred             CCCcchhhhhhhhhhhcccchhhcccccccccccccc-ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                      ..++..+..-        -.++.+....+.+...+.+ ..+..+..+++.+|++....|.... |+.|++++...|.++ 
T Consensus       127 ~el~~~i~~~--------~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  127 KELPDSIGRL--------LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-  196 (565)
T ss_pred             eecCchHHHH--------hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence            6655544321        1222333333333333222 2255688889999999855554444 999999999999999 


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChh-hhhccCCCeeccccCcccccCCCCCc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW-TAQFATFSESSYEGNHFLCGLPLPIC  239 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~  239 (257)
                      ..|+.++++.+|..|+++.|+++ ..| .|.++..|+.|.+..|.++ .+|.+ ..+++++..+|+++|+ +.+.|..+|
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c  272 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC  272 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc-cccCchHHH
Confidence            78889999999999999999998 777 6888999999999999999 66655 4589999999999999 667899999


Q ss_pred             cC-cccccccccCCccc
Q 048153          240 RS-PVTMLKASTTNKEM  255 (257)
Q Consensus       240 ~~-~l~~l~~~~~~~~~  255 (257)
                      .- ++..||+|.|+...
T Consensus       273 lLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISS  289 (565)
T ss_pred             HhhhhhhhcccCCcccc
Confidence            84 59999999998653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=9.3e-19  Score=152.02  Aligned_cols=224  Identities=26%  Similarity=0.333  Sum_probs=141.0

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +++|++.|+++ -+|+.+..+.+|+.+...+|++. ..|..+..+.+|+.|.+.+|.+..+++..-....+..++...+.
T Consensus       244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            36788888888 45677888888888888888886 67777777777888888888876554433334446667777777


Q ss_pred             CCCCcchhhhhhhhhhh------------------cccchhhccccccccccc--cccccccccceEEcccCccccccCC
Q 048153           81 LKPFETSFLVKNIYIYR------------------EKKILEIFEFTTKNIAYT--YQGRVVSYLSGLDLSCNKLICHISP  140 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~--~~~~~~~~L~~L~ls~n~~~~~~~~  140 (257)
                      +..++...+........                  ....+..+++..|.+...  ......++|+.|++++|.+.+....
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence            77776633322211111                  111233333333333221  2223356677777777777655555


Q ss_pred             CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCC-CChhhhhccC
Q 048153          141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGK-IPEWTAQFAT  219 (257)
Q Consensus       141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~  219 (257)
                      .+.++..|+.|++++|+++ ..|+.+..++.|++|....|++. ..| .+..++.|+.+|++.|+++.. +|... .-++
T Consensus       402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~  477 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPN  477 (1081)
T ss_pred             HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcc
Confidence            6667777777777777777 45677777777777777777776 556 566677777777777777642 22222 1267


Q ss_pred             CCeeccccCcc
Q 048153          220 FSESSYEGNHF  230 (257)
Q Consensus       220 L~~l~l~~n~~  230 (257)
                      |+.||++||.+
T Consensus       478 LkyLdlSGN~~  488 (1081)
T KOG0618|consen  478 LKYLDLSGNTR  488 (1081)
T ss_pred             cceeeccCCcc
Confidence            77777777775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.6e-18  Score=123.34  Aligned_cols=161  Identities=25%  Similarity=0.448  Sum_probs=140.4

Q ss_pred             ccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhh
Q 048153           18 VDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR   97 (257)
Q Consensus        18 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~   97 (257)
                      +-.+.+.+.|-+++|+++ ..|+.+..+.+|+.|++.+|.++..+++.. .                             
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~is-s-----------------------------   77 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSIS-S-----------------------------   77 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhh-h-----------------------------
Confidence            345677888999999998 677788999999999999999986544321 1                             


Q ss_pred             cccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc-cCCCccccCccCCCEEE
Q 048153           98 EKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI-GTIPSTFSNLKHIESLD  176 (257)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~  176 (257)
                                             +++|+.|.+.-|++. ..|..|..++.|+.|++++|.+. ...|..|..+..|+.|.
T Consensus        78 -----------------------l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   78 -----------------------LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             -----------------------chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence                                   677899999999887 88999999999999999999876 46788899999999999


Q ss_pred             ccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       177 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +++|.+. .+|..++.+.+|+.|.++.|.+. ..|.+++.+..|+++.+++|.+.--.|
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence            9999999 88999999999999999999999 889999999999999999998665433

>PLN03210 Resistant to P

Probab=99.65  E-value=3.8e-15  Score=139.81  Aligned_cols=246  Identities=21%  Similarity=0.254  Sum_probs=153.4

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC-
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS-   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~-   79 (257)
                      ++|+|+++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|..-...|.......+..+....+ 
T Consensus       637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            4688887764445664 78889999999998766667888888888999999987643233343332222322222211 


Q ss_pred             CCCCCcchh-------hh----hhhhhhhcccchhhccccccc---cc----c--ccccccccccceEEcccCccccccC
Q 048153           80 SLKPFETSF-------LV----KNIYIYREKKILEIFEFTTKN---IA----Y--TYQGRVVSYLSGLDLSCNKLICHIS  139 (257)
Q Consensus        80 ~l~~~~~~~-------~~----~~~~~~~~~~~l~~~~~~~~~---~~----~--~~~~~~~~~L~~L~ls~n~~~~~~~  139 (257)
                      .+..++...       ..    ........+..+..+.+....   +.    .  ......+++|++|++++|.....+|
T Consensus       716 ~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP  795 (1153)
T PLN03210        716 RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP  795 (1153)
T ss_pred             CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence            111111000       00    000000011222222221110   00    0  0011124679999999988777788


Q ss_pred             CCcCCCCCcCEEeccCCc-cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc
Q 048153          140 PQIGNLTRIQTLNLSHND-LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA  218 (257)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  218 (257)
                      ..+..+++|+.|++++|. +. ..|... .+++|+.|++++|..-..+|..   ..+|+.|++++|.+. .+|.++..++
T Consensus       796 ~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~  869 (1153)
T PLN03210        796 SSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFS  869 (1153)
T ss_pred             hhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCC
Confidence            889999999999999885 54 556554 6788999999988543344443   367889999999887 7788888899


Q ss_pred             CCCeeccccCcccccCCCCCcc-CcccccccccCCc
Q 048153          219 TFSESSYEGNHFLCGLPLPICR-SPVTMLKASTTNK  253 (257)
Q Consensus       219 ~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~~~~~~~  253 (257)
                      +|+.|++++|+-+..+|..... ..++.++++++..
T Consensus       870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            9999999988777777766533 6666777776653

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=1.3e-15  Score=135.21  Aligned_cols=118  Identities=22%  Similarity=0.355  Sum_probs=62.1

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA  202 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  202 (257)
                      .|++|++++|.++. +|..+  .++|+.|++++|.++. .|..+.  ++|+.|++++|+++ .+|..+  .++|+.|+++
T Consensus       305 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs  375 (754)
T PRK15370        305 GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVS  375 (754)
T ss_pred             hHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECC
Confidence            34444444444442 22222  1356666666666653 333332  46666677666666 445433  2466677777


Q ss_pred             CCcccCCCChhhhhccCCCeeccccCcccccCCCCC--c---cCcccccccccCCc
Q 048153          203 HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI--C---RSPVTMLKASTTNK  253 (257)
Q Consensus       203 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~---~~~l~~l~~~~~~~  253 (257)
                      +|++. .+|..+.  ..|+.|++++|.+. .+|..+  |   .+.+..+++.+|..
T Consensus       376 ~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        376 RNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            77666 3444332  25666667776654 345433  1   14556666666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=5.2e-15  Score=131.03  Aligned_cols=101  Identities=24%  Similarity=0.279  Sum_probs=64.2

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA  202 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  202 (257)
                      +|+.|++++|.+.. +|..   ..+|+.|++++|.+++ .|..   .++|+.|++++|+++ .+|..   ..+|+.|+++
T Consensus       363 ~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls  430 (788)
T PRK15387        363 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY  430 (788)
T ss_pred             ccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence            44444444444442 2221   2356777777777764 3322   246777778887777 35543   2456778888


Q ss_pred             CCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          203 HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       203 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +|++. .+|..+..+++|+.+++++|++.+..|.
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            88887 6777777888888888888888766544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=1e-14  Score=129.19  Aligned_cols=226  Identities=20%  Similarity=0.219  Sum_probs=111.6

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL   81 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l   81 (257)
                      .|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.   ..++|++|++++|.++.++ ...  ..+..+....+.+
T Consensus       205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP-~lp--~sL~~L~Ls~N~L  274 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP-VLP--PGLLELSIFSNPL  274 (788)
T ss_pred             EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCccc-Ccc--cccceeeccCCch
Confidence            5788888888 5666554  47888888888887 3443   2467888888888887543 221  1222333333333


Q ss_pred             CCCcchhh---------hhhhhhhhcccchhhcccccccccccccc------------------ccccccceEEcccCcc
Q 048153           82 KPFETSFL---------VKNIYIYREKKILEIFEFTTKNIAYTYQG------------------RVVSYLSGLDLSCNKL  134 (257)
Q Consensus        82 ~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------~~~~~L~~L~ls~n~~  134 (257)
                      ..++....         ............|+.++++.|.+......                  ..+..|++|++++|.+
T Consensus       275 ~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~L  354 (788)
T PRK15387        275 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQL  354 (788)
T ss_pred             hhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCcc
Confidence            32221000         00000000011233333333322221110                  0112344444444444


Q ss_pred             ccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhh
Q 048153          135 ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWT  214 (257)
Q Consensus       135 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  214 (257)
                      ++ +|..   ..+|+.|++++|.++. .|..   ...|+.|++++|+++ .+|..   .++|+.|++++|.+. .+|.. 
T Consensus       355 s~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l-  420 (788)
T PRK15387        355 AS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML-  420 (788)
T ss_pred             CC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc-
Confidence            32 2211   1233444444444442 2211   135666666666666 33432   245677777777766 34543 


Q ss_pred             hhccCCCeeccccCcccccCCCCCcc-CcccccccccCCcc
Q 048153          215 AQFATFSESSYEGNHFLCGLPLPICR-SPVTMLKASTTNKE  254 (257)
Q Consensus       215 ~~~~~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~~~~~~~~  254 (257)
                        ..+|+.|++++|.+. .+|..++. ..++.+++++|+..
T Consensus       421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence              235677777777754 56766553 67778888887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=7e-15  Score=130.64  Aligned_cols=203  Identities=24%  Similarity=0.340  Sum_probs=126.1

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhC-------------------CCCCCeeeccCceecccC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-------------------LNQLQLLDLSNNNLHGLI   62 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------l~~L~~L~l~~n~l~~~~   62 (257)
                      .|+|++|+++ .+|..+.  .+|++|++++|.++ .+|..+..                   ..+|+.|++++|+++.+ 
T Consensus       203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L-  277 (754)
T PRK15370        203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCL-  277 (754)
T ss_pred             EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-
Confidence            5677777777 3443332  35666666666665 33433321                   02455555555555432 


Q ss_pred             CCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCc
Q 048153           63 PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQI  142 (257)
Q Consensus        63 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~  142 (257)
                      |..+. ..+..+..+.+.+..++...          ...+..+++..+.+.... ....++|++|++++|.+++ +|..+
T Consensus       278 P~~l~-~sL~~L~Ls~N~Lt~LP~~l----------p~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~Lt~-LP~~l  344 (754)
T PRK15370        278 PENLP-EELRYLSVYDNSIRTLPAHL----------PSGITHLNVQSNSLTALP-ETLPPGLKTLEAGENALTS-LPASL  344 (754)
T ss_pred             ccccC-CCCcEEECCCCccccCcccc----------hhhHHHHHhcCCccccCC-ccccccceeccccCCcccc-CChhh
Confidence            22111 12333333444444332211          013444555555544332 2235789999999999985 55555


Q ss_pred             CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh----cc
Q 048153          143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ----FA  218 (257)
Q Consensus       143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~----~~  218 (257)
                      .  ++|+.|++++|.++ ..|..+.  +.|+.|++++|+++ .+|..+.  ..|+.|++++|++. .+|..+..    ++
T Consensus       345 ~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~  415 (754)
T PRK15370        345 P--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGP  415 (754)
T ss_pred             c--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCC
Confidence            3  68999999999998 4565553  68999999999999 5666554  37999999999998 66655443    47


Q ss_pred             CCCeeccccCccc
Q 048153          219 TFSESSYEGNHFL  231 (257)
Q Consensus       219 ~L~~l~l~~n~~~  231 (257)
                      .+..+++.+|++.
T Consensus       416 ~l~~L~L~~Npls  428 (754)
T PRK15370        416 QPTRIIVEYNPFS  428 (754)
T ss_pred             CccEEEeeCCCcc
Confidence            8899999999975

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=3.8e-17  Score=142.17  Aligned_cols=222  Identities=23%  Similarity=0.277  Sum_probs=155.4

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc--ccccccCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT--LHESYSNGS   79 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l~~~~~~~~   79 (257)
                      .++..+|+++ .+|..+..+.+|++|.+.+|.+++ +|+...++++|++|++..|.+...++..+....  +..+..+.+
T Consensus       268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n  345 (1081)
T KOG0618|consen  268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN  345 (1081)
T ss_pred             EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence            4667778886 677777788888888888888884 555566788888888888888755443332211  111111111


Q ss_pred             CCCC-----------------Ccchhhhhhhhhhhcccchhhcccccccccccccccc--ccccceEEcccCccccccCC
Q 048153           80 SLKP-----------------FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV--VSYLSGLDLSCNKLICHISP  140 (257)
Q Consensus        80 ~l~~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~L~~L~ls~n~~~~~~~~  140 (257)
                      .+..                 .++......+..+..+.+|+++.++.|.+..++....  +..|++|++|||+++ .+|+
T Consensus       346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~  424 (1081)
T KOG0618|consen  346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD  424 (1081)
T ss_pred             cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence            1111                 1122222335556677788999999887766554433  678999999999998 7778


Q ss_pred             CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCC
Q 048153          141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATF  220 (257)
Q Consensus       141 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L  220 (257)
                      .+..++.|++|....|.+. ..| .+..++.|+.+|++.|+++..........++|++||++||.-.......+..+.++
T Consensus       425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l  502 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSL  502 (1081)
T ss_pred             HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhh
Confidence            9999999999999999999 566 77889999999999999984332222233899999999998543555566667777


Q ss_pred             CeeccccC
Q 048153          221 SESSYEGN  228 (257)
Q Consensus       221 ~~l~l~~n  228 (257)
                      ...++.-|
T Consensus       503 ~~~~i~~~  510 (1081)
T KOG0618|consen  503 SQMDITLN  510 (1081)
T ss_pred             hheecccC
Confidence            76666655

>PLN03210 Resistant to P

Probab=99.58  E-value=3e-14  Score=133.84  Aligned_cols=236  Identities=19%  Similarity=0.162  Sum_probs=145.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC-
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS-   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~-   79 (257)
                      +.|++.++.+. .+|..| ...+|+.|++.++++. .++..+..+++|+.++++++...+..|.......+..+....+ 
T Consensus       592 r~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        592 RLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS  668 (1153)
T ss_pred             EEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence            35777777777 567666 4688999999999887 5667778888999999987654344454322233444443322 


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      .+..++.        ....+..|+.+++..+ .+...+....+++|++|++++|......|..   ..+|+.|++++|.+
T Consensus       669 ~L~~lp~--------si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i  737 (1153)
T PLN03210        669 SLVELPS--------SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI  737 (1153)
T ss_pred             Cccccch--------hhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence            1222221        1233445555555543 3333333334788999999998755455543   45789999999987


Q ss_pred             ccCCCcccc------------------------------CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC
Q 048153          159 IGTIPSTFS------------------------------NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG  208 (257)
Q Consensus       159 ~~~~~~~~~------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  208 (257)
                      +. .|..+.                              ..++|+.|++++|.....+|..++++++|+.|++++|...+
T Consensus       738 ~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        738 EE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             cc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            74 343221                              12356666666665544566667777777777777765444


Q ss_pred             CCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          209 KIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       209 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      .+|..+ .+++|+.|++++|..+..+|..  ...+++|++++|..+
T Consensus       817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        817 TLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE  859 (1153)
T ss_pred             eeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc
Confidence            556554 5667777777777666555543  245677777776543

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=6.4e-16  Score=126.27  Aligned_cols=249  Identities=21%  Similarity=0.189  Sum_probs=152.0

Q ss_pred             CEEEccccccccc----CCccccCcccCcEeeCcCCcccc------cCChhhhCCCCCCeeeccCceecccCCCCCcC--
Q 048153            1 MILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLEG------KVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN--   68 (257)
Q Consensus         1 ~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--   68 (257)
                      +.|+++++.++..    ++..+...+.+++++++++.+..      ..+..+..+++|+.|++++|.+....+..+..  
T Consensus        26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~  105 (319)
T cd00116          26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL  105 (319)
T ss_pred             cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence            3677888887422    44455666778888888877652      23345666778888888888775433222211  


Q ss_pred             --CcccccccCCCCCCCCcchhhhhhhhhhhcc-cchhhcccccccccccc------ccccccccceEEcccCccccc--
Q 048153           69 --TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTY------QGRVVSYLSGLDLSCNKLICH--  137 (257)
Q Consensus        69 --~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~------~~~~~~~L~~L~ls~n~~~~~--  137 (257)
                        ..+..+....+.+.......   ........ ..++.+++..+.+....      .......|++|++++|.+++.  
T Consensus       106 ~~~~L~~L~ls~~~~~~~~~~~---l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         106 RSSSLQELKLNNNGLGDRGLRL---LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             ccCcccEEEeeCCccchHHHHH---HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence              11333444333333211111   11222233 45666666666544210      111245799999999988732  


Q ss_pred             --cCCCcCCCCCcCEEeccCCccccCC----CccccCccCCCEEEccCCcccccCChhhhc-----CCCCCEEEccCCcc
Q 048153          138 --ISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHIESLDLSYNQLNGKIPLQLVE-----LNTLAVFSVAHNNL  206 (257)
Q Consensus       138 --~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l  206 (257)
                        ++..+..+++|++|++++|.+++..    ...+..+++|+.|++++|.+++.....+..     .+.|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              2334555678999999999887443    334556788999999999988533333322     37999999999988


Q ss_pred             cC----CCChhhhhccCCCeeccccCccccc----CC-CCCcc-CcccccccccCC
Q 048153          207 SG----KIPEWTAQFATFSESSYEGNHFLCG----LP-LPICR-SPVTMLKASTTN  252 (257)
Q Consensus       207 ~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~-~~~~~-~~l~~l~~~~~~  252 (257)
                      .+    .+...+..+++|+.+++++|++...    .. ...|. ..++++++.++.
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            73    2234455567899999999988754    22 11255 678888877653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=1.2e-15  Score=124.66  Aligned_cols=249  Identities=20%  Similarity=0.162  Sum_probs=159.1

Q ss_pred             EEEccccccc-ccCCccccCcccCcEeeCcCCccccc----CChhhhCCCCCCeeeccCceecccC------CCCCc-CC
Q 048153            2 ILDLSYNRLN-GSIPDLVDGLSQLSHLILAHNNLEGK----VPVQLCRLNQLQLLDLSNNNLHGLI------PPCFD-NT   69 (257)
Q Consensus         2 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~-~~   69 (257)
                      .|+|..+.++ ......|..+.+|++++++++.++..    ++..+...+.+++++++++.+.+..      +..+. ..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            5889899988 44556778888999999999998532    4455667788999999998875311      11111 12


Q ss_pred             cccccccCCCCCCCCcchhhhhhhhhhhcccchhhcccccccccccc------ccccc-cccceEEcccCcccc----cc
Q 048153           70 TLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY------QGRVV-SYLSGLDLSCNKLIC----HI  138 (257)
Q Consensus        70 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~-~~L~~L~ls~n~~~~----~~  138 (257)
                      .+..+....+.+.......+..   .... ..++.+.+..+.+....      ..... ++|+.|++++|.+++    ..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~---l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLES---LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHH---Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            2444444444443211111111   1111 33666666655443211      11123 789999999999873    23


Q ss_pred             CCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCCC
Q 048153          139 SPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGKI  210 (257)
Q Consensus       139 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~  210 (257)
                      +..+..+.+|++|++++|.+++.    .+..+...++|+.|++++|.+.+..    +..+..+++|++|++++|.+.+..
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            34566778899999999998842    2333455579999999999887433    334556789999999999988644


Q ss_pred             Chhhhh-----ccCCCeeccccCcccccCCC----CC-ccCcccccccccCCcc
Q 048153          211 PEWTAQ-----FATFSESSYEGNHFLCGLPL----PI-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       211 ~~~~~~-----~~~L~~l~l~~n~~~~~~~~----~~-~~~~l~~l~~~~~~~~  254 (257)
                      ...+..     .+.|+.+++++|.+...-..    .. ..+.++.++++.|+-.
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            443332     27999999999987521111    11 2278899999988653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=8.2e-16  Score=122.58  Aligned_cols=207  Identities=22%  Similarity=0.196  Sum_probs=135.3

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCccc-------
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLH-------   72 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-------   72 (257)
                      |+|||+.|+|+.+-|.+|.+++.+..|.+-+ |+++...-..|.++..++.|.+..|++..+..+.+..+...       
T Consensus        94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen   94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence            6799999999999999999999988876665 88886555556666656655555555543333332222211       


Q ss_pred             ------------------cccc------CCCCCCCC---------cchhhhh-hhhhh--hccc------chhh---c--
Q 048153           73 ------------------ESYS------NGSSLKPF---------ETSFLVK-NIYIY--REKK------ILEI---F--  105 (257)
Q Consensus        73 ------------------~~~~------~~~~l~~~---------~~~~~~~-~~~~~--~~~~------~l~~---~--  105 (257)
                                        .+..      ...++...         ..++... ..+..  ...+      .+..   +  
T Consensus       174 n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s  253 (498)
T KOG4237|consen  174 NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS  253 (498)
T ss_pred             hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence                              0000      01111100         0000000 00000  0000      0000   0  


Q ss_pred             -ccccccccccccc---ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCc
Q 048153          106 -EFTTKNIAYTYQG---RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ  181 (257)
Q Consensus       106 -~~~~~~~~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  181 (257)
                       ...........+.   ..+++|+.|++++|.++.+-+.+|.+...++.|.+..|++..+....|.++..|++|++.+|+
T Consensus       254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence             0001111111111   337889999999999999999999999999999999999998888899999999999999999


Q ss_pred             ccccCChhhhcCCCCCEEEccCCccc
Q 048153          182 LNGKIPLQLVELNTLAVFSVAHNNLS  207 (257)
Q Consensus       182 l~~~~~~~~~~~~~L~~L~L~~n~l~  207 (257)
                      |+...|.+|.....|.+|.|-+|.+-
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eEEEecccccccceeeeeehccCccc
Confidence            99888999999999999999988765

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=1.6e-13  Score=121.11  Aligned_cols=119  Identities=34%  Similarity=0.598  Sum_probs=108.7

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA  202 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  202 (257)
                      .++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCChhhhhc-cCCCeeccccCcccccCCC-CCccC
Q 048153          203 HNNLSGKIPEWTAQF-ATFSESSYEGNHFLCGLPL-PICRS  241 (257)
Q Consensus       203 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~-~~~~~  241 (257)
                      +|++.+.+|..+... .++..+++.+|+.+|.+|. ..|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~  539 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP  539 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence            999999999988764 5778999999999998875 33754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=2e-14  Score=119.69  Aligned_cols=176  Identities=29%  Similarity=0.502  Sum_probs=121.2

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL   81 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l   81 (257)
                      ..||+.|++. .+|..+..+..|+.+.+.+|.+. .+|..++.+..|++++++.|.++.. |..++.+.+..+....+.+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lpLkvli~sNNkl  155 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLPLKVLIVSNNKL  155 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCcceeEEEecCcc
Confidence            3577788887 67777777778888888888777 6777788888888888888888643 4444444444444433433


Q ss_pred             CCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153           82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT  161 (257)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  161 (257)
                      +.++..+                             + ...+|.+|+.+.|.+. .+|..+.++..|+.|.+..|.+. .
T Consensus       156 ~~lp~~i-----------------------------g-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~  203 (722)
T KOG0532|consen  156 TSLPEEI-----------------------------G-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-D  203 (722)
T ss_pred             ccCCccc-----------------------------c-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-h
Confidence            3332211                             1 2556777778888777 55667777788888888888777 4


Q ss_pred             CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhh
Q 048153          162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTA  215 (257)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  215 (257)
                      .|..+.. -.|..||++.|+++ .+|-.|.++..|++|-|.+|.++ .+|..+.
T Consensus       204 lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  204 LPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             CCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence            5556554 35777888888887 67777888888888888888887 6666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=1.5e-12  Score=95.71  Aligned_cols=125  Identities=22%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             ccccceEEcccCccccccCCCcC-CCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhh-hcCCCCCE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIG-NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL-VELNTLAV  198 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~  198 (257)
                      ...+++|++.+|.++.+ . .+. .+.+|+.|++++|.++.+  +.+..++.|++|++++|+++. +...+ ..+|+|++
T Consensus        18 ~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence            44688999999999843 2 444 578899999999999954  357788999999999999984 44444 46899999


Q ss_pred             EEccCCcccCCC-ChhhhhccCCCeeccccCcccccCCCCC----ccCccccccccc
Q 048153          199 FSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGLPLPI----CRSPVTMLKAST  250 (257)
Q Consensus       199 L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~l~~l~~~~  250 (257)
                      |++++|++.+.- -..++.+++|+.|++.+||+....-...    ..++++.||...
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999998533 3567789999999999999764321111    448888887643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=8.5e-12  Score=105.03  Aligned_cols=107  Identities=33%  Similarity=0.547  Sum_probs=52.3

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      .+.|+.|++++|.++ .+|........|+.+.+++|.+. ..+..+.....+..+.+.+|++. ..+..++.++.++.|+
T Consensus       185 ~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~  261 (394)
T COG4886         185 LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD  261 (394)
T ss_pred             hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence            344555555555555 33332233344555555555322 23334444455555555555554 2344445555555555


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLC  232 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  232 (257)
                      +++|.+.. ++. ++...+++.+++++|.+..
T Consensus       262 ~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         262 LSNNQISS-ISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccccccc-ccc-ccccCccCEEeccCccccc
Confidence            55555552 222 4445555555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=1.1e-12  Score=109.50  Aligned_cols=166  Identities=25%  Similarity=0.372  Sum_probs=124.6

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK   82 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~   82 (257)
                      +.|..|.+. .+|..+.++..|++++++.|+++ ..|..++.+| |+.|.+++|+++..++..-....+..++.+.+.+.
T Consensus       103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh
Confidence            456778888 78889999999999999999998 7888888875 99999999999865554433333444444444433


Q ss_pred             CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153           83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI  162 (257)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  162 (257)
                      .++...                              -.+.+|+.|.+..|.+. .+|+.+. .-.|..||++.|++. .+
T Consensus       180 slpsql------------------------------~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  180 SLPSQL------------------------------GYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             hchHHh------------------------------hhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence            322211                              11566888889999988 5566666 556899999999999 68


Q ss_pred             CccccCccCCCEEEccCCcccccCChhhhc---CCCCCEEEccCCc
Q 048153          163 PSTFSNLKHIESLDLSYNQLNGKIPLQLVE---LNTLAVFSVAHNN  205 (257)
Q Consensus       163 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~L~~n~  205 (257)
                      |-.|..|.+|++|-|.+|-+. ..|..++.   ..=.++|+.+.|+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            889999999999999999998 66666533   3445677777774

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=9.5e-13  Score=103.69  Aligned_cols=229  Identities=21%  Similarity=0.246  Sum_probs=159.1

Q ss_pred             EEEcccccccc----cCCccccCcccCcEeeCcCC---cccccCCh-------hhhCCCCCCeeeccCceecccCCCCC-
Q 048153            2 ILDLSYNRLNG----SIPDLVDGLSQLSHLILAHN---NLEGKVPV-------QLCRLNQLQLLDLSNNNLHGLIPPCF-   66 (257)
Q Consensus         2 ~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n---~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~-   66 (257)
                      .++|++|.+..    .+...++..++|+..++++-   ++...+|.       ++...|+|+++++++|-+....+..+ 
T Consensus        34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~  113 (382)
T KOG1909|consen   34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE  113 (382)
T ss_pred             EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence            58888988872    23445667778888877763   23333443       34567789999999998854433332 


Q ss_pred             ----cCCcccccccCCCCCCCCcchhhhhh------hhhhhcccchhhcccccccccccccc------ccccccceEEcc
Q 048153           67 ----DNTTLHESYSNGSSLKPFETSFLVKN------IYIYREKKILEIFEFTTKNIAYTYQG------RVVSYLSGLDLS  130 (257)
Q Consensus        67 ----~~~~l~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~L~~L~ls  130 (257)
                          ....+.+++.+.+.+....+....+.      .+....-..++++.+..|++.+....      ...+.|+.+.+.
T Consensus       114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~  193 (382)
T KOG1909|consen  114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS  193 (382)
T ss_pred             HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence                22346677777777777766655542      23333444678888888876654322      235789999999


Q ss_pred             cCcccc----ccCCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhh-----hcCCCCC
Q 048153          131 CNKLIC----HISPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQL-----VELNTLA  197 (257)
Q Consensus       131 ~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~  197 (257)
                      .|.+..    .....+..+++|+.|++..|.++..    ..+++..+++|+.+++++|.++.....++     ...|.|+
T Consensus       194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~  273 (382)
T KOG1909|consen  194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE  273 (382)
T ss_pred             cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence            998752    2334678899999999999998743    44566788999999999999986555444     2368999


Q ss_pred             EEEccCCcccCCC----ChhhhhccCCCeeccccCcc
Q 048153          198 VFSVAHNNLSGKI----PEWTAQFATFSESSYEGNHF  230 (257)
Q Consensus       198 ~L~L~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~  230 (257)
                      ++.+.+|.++..-    ....+..|.|..|++++|.+
T Consensus       274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            9999999998532    23344578999999999997

>PLN03150 hypothetical protein; Provisional

Probab=99.19  E-value=4.1e-11  Score=105.93  Aligned_cols=105  Identities=28%  Similarity=0.467  Sum_probs=93.7

Q ss_pred             cCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecccc
Q 048153          148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEG  227 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~  227 (257)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCcc--CcccccccccCC
Q 048153          228 NHFLCGLPLPICR--SPVTMLKASTTN  252 (257)
Q Consensus       228 n~~~~~~~~~~~~--~~l~~l~~~~~~  252 (257)
                      |.+.+.+|..+..  ..+..+++++|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            9999999976533  233455555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.16  E-value=4.1e-11  Score=72.90  Aligned_cols=59  Identities=37%  Similarity=0.578  Sum_probs=27.4

Q ss_pred             CcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCc
Q 048153          147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN  205 (257)
Q Consensus       147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  205 (257)
                      +|++|++++|.++.+.+.+|..+++|++|++++|+++...+..+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444444444444444443334444444444444444443

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=8.2e-11  Score=86.56  Aligned_cols=121  Identities=22%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             hhccccccccccccccc-cccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccc-cCccCCCEEEccCC
Q 048153          103 EIFEFTTKNIAYTYQGR-VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTF-SNLKHIESLDLSYN  180 (257)
Q Consensus       103 ~~~~~~~~~~~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n  180 (257)
                      +.++...+.+....... .+.+|+.|++++|.++..  +.+..++.|++|++++|.++.+. +.+ ..+++|+.|++++|
T Consensus        22 ~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   22 RELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             --------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred             ccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence            44455555544443332 367899999999999854  36888999999999999999643 334 46899999999999


Q ss_pred             cccccC-ChhhhcCCCCCEEEccCCcccCCCC---hhhhhccCCCeeccc
Q 048153          181 QLNGKI-PLQLVELNTLAVFSVAHNNLSGKIP---EWTAQFATFSESSYE  226 (257)
Q Consensus       181 ~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~  226 (257)
                      +|.... ...+..+++|+.|++.+|.+....-   ..+..+|+|+.||-.
T Consensus        99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            997532 3567889999999999999985422   346678999999754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=4.5e-11  Score=100.67  Aligned_cols=129  Identities=24%  Similarity=0.362  Sum_probs=104.6

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      ++.|+.|++++|.+. ..|......+.|+.|++++|+++ ..|.....+..|+++.+++|... ..+..+..+..+..+.
T Consensus       162 l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~  238 (394)
T COG4886         162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE  238 (394)
T ss_pred             cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccc
Confidence            788999999999998 55544447889999999999999 45555555667999999999655 5677788899999999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      +.+|++. ..+..++.+++++.+++++|.+.. ++.-.....++.|+.+++...
T Consensus       239 l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         239 LSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cCCceee-eccchhccccccceeccccccccc-cccccccCccCEEeccCcccc
Confidence            9999998 557778889999999999998654 444447789999999887553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=7.4e-11  Score=71.75  Aligned_cols=61  Identities=44%  Similarity=0.578  Sum_probs=57.2

Q ss_pred             cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153          122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL  182 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  182 (257)
                      ++|++|++++|.++...+.+|.++++|++|++++|.++.+.+.+|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999988888999999999999999999999999999999999999999975

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.12  E-value=1.1e-12  Score=112.39  Aligned_cols=187  Identities=20%  Similarity=0.222  Sum_probs=127.0

Q ss_pred             ChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCCCCCCcchhhhhh--hhhhhcccchhhccccccccccc
Q 048153           39 PVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSSLKPFETSFLVKN--IYIYREKKILEIFEFTTKNIAYT  115 (257)
Q Consensus        39 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~  115 (257)
                      |-.+..+.+|++|.+.++.+... .+ +... .-.+-....+.+..+...+....  +......+.|...+++.|.+..+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~-~G-L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA-KG-LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh-hh-hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence            55567788999999999988641 11 1110 01112223333333333333222  22233445677777877776655


Q ss_pred             cc-cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCC
Q 048153          116 YQ-GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN  194 (257)
Q Consensus       116 ~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  194 (257)
                      .. ...++.++.|+++.|++....  .+..+++|++||+++|.+..+..-...++ +|+.|.+++|.++. + ..+.++.
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~Lk  254 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLK  254 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh-h-hhHHhhh
Confidence            43 355789999999999998553  77889999999999999995443333444 49999999999983 3 3577889


Q ss_pred             CCCEEEccCCcccCCC-ChhhhhccCCCeeccccCcccc
Q 048153          195 TLAVFSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLC  232 (257)
Q Consensus       195 ~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~  232 (257)
                      +|+.||++.|-+.+.- ..-++.+..|+.|+|.|||+-|
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            9999999999888532 2345567889999999999766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=3.5e-11  Score=93.58  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=100.4

Q ss_pred             hhcccchhhccccccccccccc-cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCE
Q 048153           96 YREKKILEIFEFTTKNIAYTYQ-GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES  174 (257)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  174 (257)
                      ..-.+.+..++++.+.+..... .+..|.++.|++|+|.+..+.  .++.+++|++|++++|.++. ...+-..+.+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence            3444567777777777766543 355788999999999887442  47888899999999998884 3334456778889


Q ss_pred             EEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCeeccccCcccccC
Q 048153          175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGL  234 (257)
Q Consensus       175 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~  234 (257)
                      |.++.|.+..  ...++.+=+|..||+++|+++... -..++.+|.|+.+.+.+||+....
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            9999998863  334666778899999999998432 357888999999999999977643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=4.5e-11  Score=92.99  Aligned_cols=87  Identities=30%  Similarity=0.302  Sum_probs=67.9

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L  199 (257)
                      +++|+.|++|+|.++ ....|-..+.+.++|.+++|.+...  .-+..+-+|..||+++|+|.... ...++++|.|+++
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            777899999999887 4456667788899999999988732  34566678899999999887422 3467889999999


Q ss_pred             EccCCcccCCC
Q 048153          200 SVAHNNLSGKI  210 (257)
Q Consensus       200 ~L~~n~l~~~~  210 (257)
                      .|.+|.+.+.+
T Consensus       405 ~L~~NPl~~~v  415 (490)
T KOG1259|consen  405 RLTGNPLAGSV  415 (490)
T ss_pred             hhcCCCccccc
Confidence            99999998443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.3e-10  Score=94.36  Aligned_cols=112  Identities=20%  Similarity=0.184  Sum_probs=49.0

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC-CccccCccCCCEEEccCCcccccC-Chh-----hhcC
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI-PSTFSNLKHIESLDLSYNQLNGKI-PLQ-----LVEL  193 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~-----~~~~  193 (257)
                      +|+++.|++.+|.....-.....-+..|+.|++++|.+-... ....+.++.|..|+++.|.+...- |+.     ...+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            455555555555311111112223344555555555543211 122344455555555555554321 111     1334


Q ss_pred             CCCCEEEccCCcccCCCC-hhhhhccCCCeeccccCcccc
Q 048153          194 NTLAVFSVAHNNLSGKIP-EWTAQFATFSESSYEGNHFLC  232 (257)
Q Consensus       194 ~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~  232 (257)
                      ++|+.|++..|++.++.. ..+..+++|+.+....|++..
T Consensus       301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            555566666655542211 233344555555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.2e-10  Score=92.17  Aligned_cols=43  Identities=28%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             cccCcccCcEeeCcCCcccccCC--hhhhCCCCCCeeeccCceec
Q 048153           17 LVDGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLDLSNNNLH   59 (257)
Q Consensus        17 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~   59 (257)
                      ....|++++.|+++.|-+..+.+  .....+|+|+.|+++.|++.
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            34455555555555555443222  11234555555566555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.67  E-value=1.7e-09  Score=74.67  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=85.5

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      ..+|...++++|.+....+......+.++++++++|+++ ..|..++.++.|+.++++.|.+. ..|..+..+.++.+|+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            456778889999888554444455668899999999999 57777999999999999999988 7777777788889999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP  237 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  237 (257)
                      ..+|... ++|..+-.-...-.++++.+||.+.++-.
T Consensus       130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence            9999887 66655333333445566778887766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=3e-09  Score=90.07  Aligned_cols=211  Identities=24%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             EcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCC
Q 048153            4 DLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKP   83 (257)
Q Consensus         4 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~   83 (257)
                      .+..|.+.. .-..+..+.+|..+++.+|++.... ..+..+++|++|++++|.|+.+.+-. ....+..+....+.+..
T Consensus        78 ~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen   78 NLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISD  154 (414)
T ss_pred             ccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccchh-hccchhhheeccCcchh
Confidence            355566662 2334667778888888888887332 22566778888888888886543321 11113444444444444


Q ss_pred             Ccchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153           84 FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT  161 (257)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  161 (257)
                      +.....         +..+..+++..+.+.....  ...+..++.+++.+|.+...  .++..+..+..+++..|.++..
T Consensus       155 ~~~~~~---------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  155 ISGLES---------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             ccCCcc---------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence            433322         3344445555554444444  24456666666666665422  2344444455556666665533


Q ss_pred             CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153          162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  231 (257)
                      .+-....+.+|+.+++.+|.+. ..+..+..+..+..+++..|++...-.  +.....+..+...+|++.
T Consensus       224 ~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  224 EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            2211111113777777777776 333455566777777777777763221  224455666666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.60  E-value=4.8e-09  Score=83.12  Aligned_cols=188  Identities=19%  Similarity=0.171  Sum_probs=124.3

Q ss_pred             cccCcccCcEeeCcCCcccccCChhh----hCCCCCCeeeccCceecccCCCC--------------CcCCcccccccCC
Q 048153           17 LVDGLSQLSHLILAHNNLEGKVPVQL----CRLNQLQLLDLSNNNLHGLIPPC--------------FDNTTLHESYSNG   78 (257)
Q Consensus        17 ~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~--------------~~~~~l~~~~~~~   78 (257)
                      .+.++++|++++|++|-+....+..|    .....|++|-+.+|.+...-...              -....+..+....
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            34567788889999888875555444    45667888888888774211111              0112234444444


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhccccccccccccc------cccccccceEEcccCcccc----ccCCCcCCCCCc
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ------GRVVSYLSGLDLSCNKLIC----HISPQIGNLTRI  148 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~L~~L~ls~n~~~~----~~~~~~~~l~~L  148 (257)
                      +.+...........   +.....++.+.+.++.+.....      ....++|+.|++..|.++.    .+...++.+++|
T Consensus       167 Nrlen~ga~~~A~~---~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  167 NRLENGGATALAEA---FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             cccccccHHHHHHH---HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            55544444443333   3333556666666666654332      2458899999999998863    344567888999


Q ss_pred             CEEeccCCccccCCCccc-----cCccCCCEEEccCCccccc----CChhhhcCCCCCEEEccCCccc
Q 048153          149 QTLNLSHNDLIGTIPSTF-----SNLKHIESLDLSYNQLNGK----IPLQLVELNTLAVFSVAHNNLS  207 (257)
Q Consensus       149 ~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~  207 (257)
                      +.|++++|.++.....++     ...+.|+.+.+.+|.++..    +...+...+.|..|+|++|++.
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            999999999986544444     2568999999999998743    2233455799999999999993

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=4.5e-08  Score=89.23  Aligned_cols=65  Identities=28%  Similarity=0.358  Sum_probs=46.4

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCF   66 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   66 (257)
                      ++|||++|.-.+.+|+.++.+.+|++|+++++.+. .+|..++.+..|.+|++..+.-...++...
T Consensus       574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchh
Confidence            46778777766677877888888888888888777 677777777778888777665433344433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=8.4e-09  Score=87.36  Aligned_cols=222  Identities=24%  Similarity=0.205  Sum_probs=148.8

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.|++.+|+|.. +...+..+++|++|++++|.++...+  +..++.|+.|++.+|.+..+. +.-....+.......+.
T Consensus        98 ~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   98 EALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNR  173 (414)
T ss_pred             eeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccCCcch
Confidence            368999999994 44447889999999999999985443  567778999999999997542 22112234444445555


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC--cCEEeccCCcc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR--IQTLNLSHNDL  158 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~--L~~L~l~~n~l  158 (257)
                      +..+...      . ...+..++.+....+.+...........+..+++..|.+...-  .+..+..  |+.+++++|.+
T Consensus       174 i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  174 IVDIEND------E-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             hhhhhhh------h-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcc
Confidence            5444442      1 2344455666666666666555555666666788888876433  2333444  89999999998


Q ss_pred             ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC---CCChh-hhhccCCCeeccccCcccccC
Q 048153          159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG---KIPEW-TAQFATFSESSYEGNHFLCGL  234 (257)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~-~~~~~~L~~l~l~~n~~~~~~  234 (257)
                      .. .+..+.....+..+++..|++...  ..+...+.+..+....|.+..   ..... ....+.++.+.+..|+....-
T Consensus       245 ~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  245 SR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             cc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            83 435666778999999999988742  224445677777788887762   22221 455788999999999887755


Q ss_pred             CCCC
Q 048153          235 PLPI  238 (257)
Q Consensus       235 ~~~~  238 (257)
                      +...
T Consensus       322 ~~~~  325 (414)
T KOG0531|consen  322 SLDL  325 (414)
T ss_pred             cccH
Confidence            5443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=1.1e-08  Score=70.71  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=84.0

Q ss_pred             cccceEEcccCccccccCCC---cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCE
Q 048153          122 SYLSGLDLSCNKLICHISPQ---IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAV  198 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  198 (257)
                      ..+..+++++|.+... ++.   +.....|++.++++|.+....+..-...+.++++++.+|.++ .+|..++.++.|+.
T Consensus        27 kE~h~ldLssc~lm~i-~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYI-ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHH-HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3466778888876532 333   344567888999999999544444445569999999999999 78888999999999


Q ss_pred             EEccCCcccCCCChhhhhccCCCeeccccCcc
Q 048153          199 FSVAHNNLSGKIPEWTAQFATFSESSYEGNHF  230 (257)
Q Consensus       199 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  230 (257)
                      |+++.|.+. ..|..+..+.++..|+..+|..
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            999999998 6677777899999999988864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=8e-09  Score=89.30  Aligned_cols=128  Identities=22%  Similarity=0.273  Sum_probs=100.7

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCCh-hhhcCCCCCEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL-QLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L  199 (257)
                      ...|...++++|.+. ....+++-++.+++|++++|+++..  +.+..+++|++||+++|+++ .+|. .... .+|..|
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L  237 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLL  237 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh-hhheee
Confidence            556888899999987 5567788899999999999999944  38889999999999999998 4554 3333 459999


Q ss_pred             EccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC--ccCcccccccccCCccc
Q 048153          200 SVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI--CRSPVTMLKASTTNKEM  255 (257)
Q Consensus       200 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~l~~~~~~~~~  255 (257)
                      .+++|.++.  ..++.++.+|+.||++.|-+...--..+  ..+.|..|.+.+|...+
T Consensus       238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            999999973  3456789999999999998775322222  44788888888887543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.6e-08  Score=77.67  Aligned_cols=102  Identities=19%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             ccccccceEEcccCcc---ccccCCCcCCCCCcCEEeccCCc-cccCCCccccCccCCCEEEccCCcccccCChhh---h
Q 048153          119 RVVSYLSGLDLSCNKL---ICHISPQIGNLTRIQTLNLSHND-LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL---V  191 (257)
Q Consensus       119 ~~~~~L~~L~ls~n~~---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~  191 (257)
                      ...++|..|.++|+.-   .+.+......+++|.+||+++|. ++.....+|...+.|++|+++.|..  ..|..+   .
T Consensus       283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~  360 (419)
T KOG2120|consen  283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELN  360 (419)
T ss_pred             hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeec
Confidence            3356788888888642   22333345678999999999984 6665556677889999999999974  456544   5


Q ss_pred             cCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153          192 ELNTLAVFSVAHNNLSGKIPEWTAQFATFSE  222 (257)
Q Consensus       192 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  222 (257)
                      ..|.|.+||+.++-=.+........+++|..
T Consensus       361 s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  361 SKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             cCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            6799999999987544332223334566543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.4e-06  Score=48.71  Aligned_cols=36  Identities=36%  Similarity=0.628  Sum_probs=18.1

Q ss_pred             CCCEEEccCCcccccCChhhhcCCCCCEEEccCCccc
Q 048153          171 HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS  207 (257)
Q Consensus       171 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  207 (257)
                      +|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33434555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=1.8e-06  Score=48.25  Aligned_cols=38  Identities=34%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             ccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecc
Q 048153           22 SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG   60 (257)
Q Consensus        22 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~   60 (257)
                      ++|++|++++|+++ .+|+.++.+++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            35667777777776 344456677777777777776653

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.11  E-value=4.2e-06  Score=61.94  Aligned_cols=104  Identities=18%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEEE
Q 048153          122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVFS  200 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~  200 (257)
                      .....+++++|.+. .. +.|++++.|.+|.+++|.|+.+.|..-.-.+.|++|.+.+|.+.... ...+..+|.|+.|.
T Consensus        42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            34555667776664 22 35666777777777777777666665556666777777777665211 23456667777777


Q ss_pred             ccCCcccCCC---ChhhhhccCCCeecccc
Q 048153          201 VAHNNLSGKI---PEWTAQFATFSESSYEG  227 (257)
Q Consensus       201 L~~n~l~~~~---~~~~~~~~~L~~l~l~~  227 (257)
                      +=+|.+...-   -..+..+|+|+.||.+.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777665321   12344566677666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.08  E-value=7e-06  Score=60.81  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=79.0

Q ss_pred             CCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCee
Q 048153          145 LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSES  223 (257)
Q Consensus       145 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l  223 (257)
                      ......+++++|.+.  ..+.|..++.|.+|.+.+|+|+.+.|.--.-+++|+.|.+.+|.+.... ...++.||+|+.|
T Consensus        41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            345789999999988  4456788999999999999999776765556789999999999998532 2457789999999


Q ss_pred             ccccCcccccCCCCC---cc-Ccccccccc
Q 048153          224 SYEGNHFLCGLPLPI---CR-SPVTMLKAS  249 (257)
Q Consensus       224 ~l~~n~~~~~~~~~~---~~-~~l~~l~~~  249 (257)
                      .+-+||..-.--...   |- ++++.||-+
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehh
Confidence            999999764322222   22 666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=7.3e-08  Score=75.24  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             cccceEEcccCc-cccc-cCCCcCCCCCcCEEeccCCccccCCCc-cccCc-cCCCEEEccCCcc--ccc-CChhhhcCC
Q 048153          122 SYLSGLDLSCNK-LICH-ISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNL-KHIESLDLSYNQL--NGK-IPLQLVELN  194 (257)
Q Consensus       122 ~~L~~L~ls~n~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~-~~L~~L~l~~n~l--~~~-~~~~~~~~~  194 (257)
                      .+|+.++++++. ++.. ..-.+..++.|..|+++||.+...... ++... ++|..|++++++-  ... +..-..++|
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence            457777777643 2211 112356677888888888875532222 22222 3777777777641  111 111225678


Q ss_pred             CCCEEEccCCccc-CCCChhhhhccCCCeeccccCcccccCCCCC----ccCcccccccccC
Q 048153          195 TLAVFSVAHNNLS-GKIPEWTAQFATFSESSYEGNHFLCGLPLPI----CRSPVTMLKASTT  251 (257)
Q Consensus       195 ~L~~L~L~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~l~~l~~~~~  251 (257)
                      +|.+|||+.|... .....++.+++.|+.++++.|-..  .|..+    .-++++-||+.++
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            8888888877644 333456667788888887776321  23222    3366666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.95  E-value=6.2e-06  Score=75.58  Aligned_cols=104  Identities=23%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             ccceEEcccCc--cccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          123 YLSGLDLSCNK--LICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       123 ~L~~L~ls~n~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      .|++|-+.+|.  +.....+.|..++.|+.||+++|.=-+..|..++.+-+|+.|+++++.++ .+|..+.++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555543  22222233455555555555554322245555555555555555555555 4555555555555555


Q ss_pred             ccCCcccCCCChhhhhccCCCeecccc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEG  227 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~  227 (257)
                      +..+.-...+|.....+++|+++.+..
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhcccccEEEeec
Confidence            555544433444444455555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=3.3e-06  Score=65.42  Aligned_cols=207  Identities=16%  Similarity=0.164  Sum_probs=104.7

Q ss_pred             EEEccccccccc----CCccccCcccCcEeeCcCCccc---ccC-------ChhhhCCCCCCeeeccCceecccCCCCCc
Q 048153            2 ILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLE---GKV-------PVQLCRLNQLQLLDLSNNNLHGLIPPCFD   67 (257)
Q Consensus         2 ~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~---~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~   67 (257)
                      .+|||+|.|...    +...+++-.+|+..+++.-...   ..+       .+++-.+|+|+..++++|.+....|..+.
T Consensus        34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~  113 (388)
T COG5238          34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG  113 (388)
T ss_pred             EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence            478888887732    2334455566777776653222   122       23456788999999999988665554432


Q ss_pred             -----CCcccccccCCCCCCCCcchhhhhhhhhh------hcccchhhcccccccccccccc------ccccccceEEcc
Q 048153           68 -----NTTLHESYSNGSSLKPFETSFLVKNIYIY------REKKILEIFEFTTKNIAYTYQG------RVVSYLSGLDLS  130 (257)
Q Consensus        68 -----~~~l~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~------~~~~~L~~L~ls  130 (257)
                           ...+..+..+.+.+..+.+.-..+.....      .....++++.+..+.+.+....      .....|+.+.+.
T Consensus       114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~  193 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQ  193 (388)
T ss_pred             HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEee
Confidence                 23356666777777776665554433322      2223455555555443322100      111345555555


Q ss_pred             cCccccc-----cCCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhh------hcCCC
Q 048153          131 CNKLICH-----ISPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQL------VELNT  195 (257)
Q Consensus       131 ~n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~  195 (257)
                      .|.+...     .-..+..+.+|+.|++..|.++..    ..+++..|+.|+.|.+.+|-++......+      ...|+
T Consensus       194 qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~  273 (388)
T COG5238         194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN  273 (388)
T ss_pred             ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence            5554311     001123344566666666655432    22233445555566666555543322221      11355


Q ss_pred             CCEEEccCCcccC
Q 048153          196 LAVFSVAHNNLSG  208 (257)
Q Consensus       196 L~~L~L~~n~l~~  208 (257)
                      |..|...+|...+
T Consensus       274 l~~L~~~Yne~~~  286 (388)
T COG5238         274 LMPLPGDYNERRG  286 (388)
T ss_pred             ccccccchhhhcC
Confidence            5555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=5.9e-06  Score=64.83  Aligned_cols=38  Identities=29%  Similarity=0.276  Sum_probs=18.8

Q ss_pred             ccCcEeeCcCCcccccC--ChhhhCCCCCCeeeccCceec
Q 048153           22 SQLSHLILAHNNLEGKV--PVQLCRLNQLQLLDLSNNNLH   59 (257)
Q Consensus        22 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~   59 (257)
                      .+++.+|+.+|.++.+.  ..-+..+|.|++|++++|.+.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            44555555555555321  222334555555555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.83  E-value=0.00012  Score=51.42  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             CccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceeccc
Q 048153           15 PDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL   61 (257)
Q Consensus        15 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~   61 (257)
                      ...|.++.+|+.+.+.. .+.......|...++|+.+.+.++ +..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i   49 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI   49 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc
Confidence            45677777888877774 455455666777777777776664 4433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=0.00015  Score=60.41  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             cCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCc
Q 048153           19 DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNN   56 (257)
Q Consensus        19 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   56 (257)
                      ..+.+++.|++++|.++ .+| .+.  ++|++|.+.++
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc   82 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENC   82 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCC
Confidence            34567777777777666 344 221  24777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=9.5e-06  Score=63.72  Aligned_cols=195  Identities=18%  Similarity=0.238  Sum_probs=99.2

Q ss_pred             EEEccccccccc--CCccccCcccCcEeeCcCCcccccCChhh-hCCCCCCeeeccCceecccCCCC-CcC-Cccccccc
Q 048153            2 ILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQL-CRLNQLQLLDLSNNNLHGLIPPC-FDN-TTLHESYS   76 (257)
Q Consensus         2 ~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~-~~l~~~~~   76 (257)
                      .+||.+|.|++.  +...+.+||+|+.|+++.|.+... ...+ ....+|++|.+.+..+.-.-... ... +.+.++..
T Consensus        75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm  153 (418)
T KOG2982|consen   75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM  153 (418)
T ss_pred             hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence            489999999943  456778999999999999999732 2233 35668999999888764211111 111 11222222


Q ss_pred             CCCCCCCCcc---hh--hhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccccc-CCCcCCCCCcCE
Q 048153           77 NGSSLKPFET---SF--LVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHI-SPQIGNLTRIQT  150 (257)
Q Consensus        77 ~~~~l~~~~~---~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-~~~~~~l~~L~~  150 (257)
                      +.+++..+..   ..  ......-..........+...+.+     +..++++..+.++.|.+.... ...+...+.+.-
T Consensus       154 S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l-----~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  154 SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL-----SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH-----HhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            2232211100   00  000000111111111111111111     122556666666666554221 123444555556


Q ss_pred             EeccCCccccC-CCccccCccCCCEEEccCCcccccCC----h--hhhcCCCCCEEEcc
Q 048153          151 LNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIP----L--QLVELNTLAVFSVA  202 (257)
Q Consensus       151 L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~--~~~~~~~L~~L~L~  202 (257)
                      |+++.++|..+ ..+++.+++.|.-|.++++-+.+.+-    .  .++++++++.|+=+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            77777776643 24456677777777777776543221    1  23556666666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.66  E-value=1e-05  Score=62.79  Aligned_cols=188  Identities=16%  Similarity=0.107  Sum_probs=121.1

Q ss_pred             cccCcccCcEeeCcCCcccccCChhh----hCCCCCCeeeccCceecccCCCCCc--------------CCcccccccCC
Q 048153           17 LVDGLSQLSHLILAHNNLEGKVPVQL----CRLNQLQLLDLSNNNLHGLIPPCFD--------------NTTLHESYSNG   78 (257)
Q Consensus        17 ~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~--------------~~~l~~~~~~~   78 (257)
                      ++..||+|+..++++|-+....|..+    +.-+.|.+|.+.+|.+...-...++              .+.+..++-..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            45688999999999999987666554    4567899999999987422211111              12233333334


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhccccccccccc-------cccccccccceEEcccCccc----cccCCCcCCCCC
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYT-------YQGRVVSYLSGLDLSCNKLI----CHISPQIGNLTR  147 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~L~~L~ls~n~~~----~~~~~~~~~l~~  147 (257)
                      +++...+...........   ..+..+.+..+.+...       .....+.+|+.|++..|.++    ..+...++.++.
T Consensus       167 NRlengs~~~~a~~l~sh---~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         167 NRLENGSKELSAALLESH---ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             chhccCcHHHHHHHHHhh---cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            444444443333333333   4455566666665543       22344778999999999886    234456778889


Q ss_pred             cCEEeccCCccccCCCccc------cCccCCCEEEccCCcccccC------Chhh-hcCCCCCEEEccCCccc
Q 048153          148 IQTLNLSHNDLIGTIPSTF------SNLKHIESLDLSYNQLNGKI------PLQL-VELNTLAVFSVAHNNLS  207 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~------~~~~-~~~~~L~~L~L~~n~l~  207 (257)
                      |+.|.+..|.++....+++      ...+.|..|...+|.+.+..      +... ..+|-|..|.+.||++.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            9999999999886554443      13478899999999765421      1111 34677778888888887

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.50  E-value=0.00068  Score=47.46  Aligned_cols=60  Identities=13%  Similarity=0.269  Sum_probs=19.8

Q ss_pred             CCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153          140 PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA  202 (257)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  202 (257)
                      ..|..++.++.+.+.. .+.......|..++.++.+++..+ +.......+.+. .++.+.+.
T Consensus        52 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   52 NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            3444444444444433 222233333444444444444333 222223333333 44444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.43  E-value=0.00071  Score=56.51  Aligned_cols=53  Identities=9%  Similarity=0.098  Sum_probs=23.7

Q ss_pred             cchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153          100 KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN  156 (257)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n  156 (257)
                      +.+..+.+..+.+...+  ..+.+|++|.++++.-...+|+.+.  ++|++|.+++|
T Consensus        52 ~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            33444444444333332  2344566666655332223343332  35666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.31  E-value=0.00021  Score=55.16  Aligned_cols=102  Identities=17%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCC--ccccCCCccccCccCCCEEEccCCccccc-CChhhhcCCCCC
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN--DLIGTIPSTFSNLKHIESLDLSYNQLNGK-IPLQLVELNTLA  197 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~  197 (257)
                      ...++.+.+.+..+++.  ..|..+++|++|.++.|  .+++-..-....++.|+++++++|++... -...+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            45677777777776633  36777888999999988  44444444445568899999999988631 112345567788


Q ss_pred             EEEccCCcccCCCC---hhhhhccCCCeec
Q 048153          198 VFSVAHNNLSGKIP---EWTAQFATFSESS  224 (257)
Q Consensus       198 ~L~L~~n~l~~~~~---~~~~~~~~L~~l~  224 (257)
                      .|++..|.....-.   ..+..+++|+.++
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            88888887765222   1233456666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=0.00023  Score=54.96  Aligned_cols=61  Identities=28%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             ccccceEEcccC--ccccccCCCcCCCCCcCEEeccCCccccCCCccc---cCccCCCEEEccCCccc
Q 048153          121 VSYLSGLDLSCN--KLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTF---SNLKHIESLDLSYNQLN  183 (257)
Q Consensus       121 ~~~L~~L~ls~n--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~  183 (257)
                      +++|++|.++.|  +..+-++.....+++|+++++++|++..  +.++   ..+..|.+|++.+|..+
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            455666666666  4443333333444666666666666551  2222   23344556666665544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.15  E-value=0.00017  Score=64.75  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=57.7

Q ss_pred             ccccccceEEcccCccccc-cCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccc-cCChhhhcCCCC
Q 048153          119 RVVSYLSGLDLSCNKLICH-ISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG-KIPLQLVELNTL  196 (257)
Q Consensus       119 ~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L  196 (257)
                      ..+|.|++|.+++-.+... ......++++|..||+++.+++..  ..++.+++|+.|.+++=.+.. .....+-++++|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            4466677777766444211 122334566677777777666633  344555666666666544432 111233456666


Q ss_pred             CEEEccCCcccCCCChhh-------hhccCCCeeccccCcccc
Q 048153          197 AVFSVAHNNLSGKIPEWT-------AQFATFSESSYEGNHFLC  232 (257)
Q Consensus       197 ~~L~L~~n~l~~~~~~~~-------~~~~~L~~l~l~~n~~~~  232 (257)
                      +.||+|..+..+.. ..+       ..+|+|+.||.+++.+..
T Consensus       223 ~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  223 RVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             Ceeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhH
Confidence            66666665544221 111       135666666666655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.12  E-value=0.00014  Score=65.16  Aligned_cols=129  Identities=16%  Similarity=0.138  Sum_probs=90.3

Q ss_pred             ccccceEEcccCccccccCCC----cCCCCCcCEEeccCCccccC-CCccccCccCCCEEEccCCcccccCChhhhcCCC
Q 048153          121 VSYLSGLDLSCNKLICHISPQ----IGNLTRIQTLNLSHNDLIGT-IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNT  195 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  195 (257)
                      -.+|++|+++|...-  ...|    -..+|.|++|.+++-.+... ......+.++|..||++++.++..  ..+.++++
T Consensus       121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            356999999885532  1122    24478999999998765422 233446788999999999999843  67888999


Q ss_pred             CCEEEccCCcccC-CCChhhhhccCCCeeccccCcccccC--CCCC--cc---CcccccccccCCc
Q 048153          196 LAVFSVAHNNLSG-KIPEWTAQFATFSESSYEGNHFLCGL--PLPI--CR---SPVTMLKASTTNK  253 (257)
Q Consensus       196 L~~L~L~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~--~~---~~l~~l~~~~~~~  253 (257)
                      |+.|.+++=.+.. ..-..+-.+.+|+.||++......+.  ..-.  |.   +-|+.||.|+++.
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            9999999988875 33346667899999999987655432  1111  44   5666777776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=2.4e-05  Score=60.93  Aligned_cols=78  Identities=18%  Similarity=0.178  Sum_probs=36.7

Q ss_pred             cCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCeeccc
Q 048153          148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSESSYE  226 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~  226 (257)
                      .++|++-+|.++++  .....|+.|+.|.|+-|+|+..  ..+.++.+|+.|.|+.|.|.+.. ...+.++|+|+.|++.
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            34444445544422  1223455555555555555421  22444555555555555554221 1233445555555555


Q ss_pred             cCc
Q 048153          227 GNH  229 (257)
Q Consensus       227 ~n~  229 (257)
                      .||
T Consensus        97 ENP   99 (388)
T KOG2123|consen   97 ENP   99 (388)
T ss_pred             cCC
Confidence            555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00013  Score=57.04  Aligned_cols=81  Identities=20%  Similarity=0.124  Sum_probs=42.6

Q ss_pred             chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC-CccccCccCCCEEEccC
Q 048153          101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI-PSTFSNLKHIESLDLSY  179 (257)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~  179 (257)
                      +...++++.+++........++.|+.|.+|-|++++.-  .+..|++|+.|+|..|.|.... ...+.++++|++|.+..
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            33445555555555555555666666666666665332  2455666666666666555321 11234555555555555


Q ss_pred             Cccc
Q 048153          180 NQLN  183 (257)
Q Consensus       180 n~l~  183 (257)
                      |--.
T Consensus        98 NPCc  101 (388)
T KOG2123|consen   98 NPCC  101 (388)
T ss_pred             CCcc
Confidence            5433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.90  E-value=0.0036  Score=29.02  Aligned_cols=12  Identities=50%  Similarity=0.484  Sum_probs=6.0

Q ss_pred             CcEeeCcCCccc
Q 048153           24 LSHLILAHNNLE   35 (257)
Q Consensus        24 L~~L~l~~n~l~   35 (257)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            445555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.77  E-value=0.0033  Score=29.16  Aligned_cols=12  Identities=33%  Similarity=0.556  Sum_probs=5.6

Q ss_pred             CCEEEccCCccc
Q 048153          196 LAVFSVAHNNLS  207 (257)
Q Consensus       196 L~~L~L~~n~l~  207 (257)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.0033  Score=46.95  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=59.1

Q ss_pred             CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCc-ccccCChhhh-cCCCCCEEEccCCc-ccCCCChhhhhccC
Q 048153          143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLV-ELNTLAVFSVAHNN-LSGKIPEWTAQFAT  219 (257)
Q Consensus       143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~~~  219 (257)
                      ..-..++.++-+++.|..+.-+.+..++.++.|.+.+|. +.+.-...++ -.++|+.|++++|. |++.-...+..+++
T Consensus        98 ~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen   98 ADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             CCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            334457888888888777777777788888888888874 3322222222 24788888888775 55444566677888


Q ss_pred             CCeeccccCcc
Q 048153          220 FSESSYEGNHF  230 (257)
Q Consensus       220 L~~l~l~~n~~  230 (257)
                      |+.+.+.+-+.
T Consensus       178 Lr~L~l~~l~~  188 (221)
T KOG3864|consen  178 LRRLHLYDLPY  188 (221)
T ss_pred             hHHHHhcCchh
Confidence            88888777543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.82  E-value=0.02  Score=24.64  Aligned_cols=13  Identities=23%  Similarity=0.516  Sum_probs=4.8

Q ss_pred             CCCEEEccCCccc
Q 048153          195 TLAVFSVAHNNLS  207 (257)
Q Consensus       195 ~L~~L~L~~n~l~  207 (257)
                      +|+.|++++|++.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.30  E-value=0.072  Score=25.59  Aligned_cols=14  Identities=36%  Similarity=0.605  Sum_probs=6.3

Q ss_pred             CcCEEeccCCcccc
Q 048153          147 RIQTLNLSHNDLIG  160 (257)
Q Consensus       147 ~L~~L~l~~n~l~~  160 (257)
                      +|+.|++++|.++.
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            34444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.30  E-value=0.072  Score=25.59  Aligned_cols=14  Identities=36%  Similarity=0.605  Sum_probs=6.3

Q ss_pred             CcCEEeccCCcccc
Q 048153          147 RIQTLNLSHNDLIG  160 (257)
Q Consensus       147 ~L~~L~l~~n~l~~  160 (257)
                      +|+.|++++|.++.
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            34444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.92  E-value=0.083  Score=25.36  Aligned_cols=14  Identities=36%  Similarity=0.489  Sum_probs=8.1

Q ss_pred             ccCcEeeCcCCccc
Q 048153           22 SQLSHLILAHNNLE   35 (257)
Q Consensus        22 ~~L~~L~l~~n~l~   35 (257)
                      ++|++|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45556666666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.92  E-value=0.083  Score=25.36  Aligned_cols=14  Identities=36%  Similarity=0.489  Sum_probs=8.1

Q ss_pred             ccCcEeeCcCCccc
Q 048153           22 SQLSHLILAHNNLE   35 (257)
Q Consensus        22 ~~L~~L~l~~n~l~   35 (257)
                      ++|++|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45556666666555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.71  E-value=0.04  Score=47.63  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=14.6

Q ss_pred             cCCCEEEccCCc-ccccCChhhhc-CCCCCEEEccCCc
Q 048153          170 KHIESLDLSYNQ-LNGKIPLQLVE-LNTLAVFSVAHNN  205 (257)
Q Consensus       170 ~~L~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~L~~n~  205 (257)
                      ..|+.++++++. +++.....+.. +++|+.|.+.++.
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            444444444444 33222222221 3444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.31  E-value=0.0032  Score=48.20  Aligned_cols=86  Identities=24%  Similarity=0.334  Sum_probs=51.1

Q ss_pred             CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153          143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSE  222 (257)
Q Consensus       143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  222 (257)
                      ......+.||++.|.+. .....|..+..+..++++.|++. ..|..+.....+.++++..|..+ ..|-+....+.++.
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            33445566666666555 23444555556666666666665 55665655555666666666665 55666666666666


Q ss_pred             eccccCccc
Q 048153          223 SSYEGNHFL  231 (257)
Q Consensus       223 l~l~~n~~~  231 (257)
                      .+..+|++.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            666666643

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.02  E-value=0.035  Score=26.17  Aligned_cols=13  Identities=54%  Similarity=0.830  Sum_probs=5.2

Q ss_pred             CCCEEEccCCccc
Q 048153          171 HIESLDLSYNQLN  183 (257)
Q Consensus       171 ~L~~L~l~~n~l~  183 (257)
                      +|++|++++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.97  E-value=0.059  Score=46.58  Aligned_cols=110  Identities=16%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             ccccccceEEcccC-cccccc----CCCcCCCCCcCEEeccCCc-cccCCCccccC-ccCCCEEEccCCc-ccccCChhh
Q 048153          119 RVVSYLSGLDLSCN-KLICHI----SPQIGNLTRIQTLNLSHND-LIGTIPSTFSN-LKHIESLDLSYNQ-LNGKIPLQL  190 (257)
Q Consensus       119 ~~~~~L~~L~ls~n-~~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~~~~  190 (257)
                      ...+.|+.|+++++ ......    ......+.+|+.++++++. ++...-..+.. ++.|+.|.+.++. +++.....+
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            34678999999873 211111    1234556889999999988 77655555543 7899999988887 665444433


Q ss_pred             -hcCCCCCEEEccCCcccCC--CChhhhhccCCCeeccccC
Q 048153          191 -VELNTLAVFSVAHNNLSGK--IPEWTAQFATFSESSYEGN  228 (257)
Q Consensus       191 -~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~l~l~~n  228 (257)
                       ..++.|++|+++++.....  +......+++++.+.+.+.
T Consensus       291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence             5678899999999887522  3333445777776655444

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=90.73  E-value=0.13  Score=44.48  Aligned_cols=68  Identities=22%  Similarity=0.125  Sum_probs=35.4

Q ss_pred             CccCCCEEEccCCcccccC--ChhhhcCCCCCEEEccCCcccCCCChhhhh--ccCCCeeccccCcccccCC
Q 048153          168 NLKHIESLDLSYNQLNGKI--PLQLVELNTLAVFSVAHNNLSGKIPEWTAQ--FATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       168 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--~~~L~~l~l~~n~~~~~~~  235 (257)
                      ..+.+..+++++|++....  ...-...|.|+.|+|++|...-....++..  ...|+++.+.|||+...+.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~  287 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS  287 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence            3456666777777664321  111233577777777777222112222222  3456777777777655433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.13  E-value=0.0028  Score=54.57  Aligned_cols=90  Identities=23%  Similarity=0.232  Sum_probs=55.3

Q ss_pred             CCCCcCEEeccCCccccCC----CccccCccC-CCEEEccCCcccccC----ChhhhcC-CCCCEEEccCCcccCCCC--
Q 048153          144 NLTRIQTLNLSHNDLIGTI----PSTFSNLKH-IESLDLSYNQLNGKI----PLQLVEL-NTLAVFSVAHNNLSGKIP--  211 (257)
Q Consensus       144 ~l~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~L~~n~l~~~~~--  211 (257)
                      ....+++|.+++|.++...    ...+...++ +..+++..|++.+..    ...+... +.+++++++.|.+.+.-.  
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            4667788888887766321    122333344 566888888776431    1223333 566888888888875433  


Q ss_pred             --hhhhhccCCCeeccccCccccc
Q 048153          212 --EWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       212 --~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                        ..+..++.++++.++.|++..+
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCccccH
Confidence              3344567888888888876643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.01  E-value=0.04  Score=41.33  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=58.4

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCCc-cccCCCcccc-CccCCCEEEccCC-cccccCChhhhcCCCCCEE
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND-LIGTIPSTFS-NLKHIESLDLSYN-QLNGKIPLQLVELNTLAVF  199 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L  199 (257)
                      .++.++-++..+.++--+.+..++.++.|.+.+|+ +...--+-++ ..++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            47778888877765544566777888888888875 4432222222 3469999999988 4886667778888999988


Q ss_pred             EccCCc
Q 048153          200 SVAHNN  205 (257)
Q Consensus       200 ~L~~n~  205 (257)
                      .+.+=.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            887643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.15  E-value=0.0087  Score=45.89  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      ....+.||++.|.+- .+...|+-++.+..++++.|.+. ..|..+.....+..+++..|..+ ..|.++...++++.++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            455677888888875 44556777888999999999888 67777777788888888888887 7888888899999999


Q ss_pred             ccCCcccC
Q 048153          201 VAHNNLSG  208 (257)
Q Consensus       201 L~~n~l~~  208 (257)
                      +.+|.+..
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            99988663

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.64  E-value=0.83  Score=22.00  Aligned_cols=13  Identities=38%  Similarity=0.611  Sum_probs=7.0

Q ss_pred             CCCEEEccCCccc
Q 048153          171 HIESLDLSYNQLN  183 (257)
Q Consensus       171 ~L~~L~l~~n~l~  183 (257)
                      +|+.|++++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            4555555555555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.70  E-value=1.1  Score=21.56  Aligned_cols=15  Identities=40%  Similarity=0.592  Sum_probs=9.9

Q ss_pred             CCCCeeeccCceecc
Q 048153           46 NQLQLLDLSNNNLHG   60 (257)
Q Consensus        46 ~~L~~L~l~~n~l~~   60 (257)
                      .+|+.|+++.|+|+.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            466777777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-22
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VXXXXXXXXXXXXXXXXXXHG 60
           +L++S N+  G IP L   L  L +L LA N   G++P                    +G
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI-FEFTTKNIAYTYQGR 119
            +PP F + +L ES +   S   F     +  +   R  K+L++ F   +  +  +    
Sbjct: 309 AVPPFFGSCSLLESLA--LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 120 VVSYLSGLDLSCNKL-------ICH-------------------ISPQIGNLTRIQTLNL 153
             S L+ LDLS N         +C                    I P + N + + +L+L
Sbjct: 367 SASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           S N L GTIPS+  +L  +  L L  N L G+IP +L+ + TL    +  N+L+G+IP  
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 214 TAQFATFSESSYEGNHFLCGLPLPICR 240
            +     +  S   N     +P  I R
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGR 512

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           S L  L LS N L   I   +G+L++++ L L  N L G IP     +K +E+L L +N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP--LPIC 239
           L G+IP  L     L   S+++N L+G+IP+W  +    +      N F   +P  L  C
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 240 RS 241
           RS
Sbjct: 538 RS 539

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VXXXXXXXXXXXXXXXXXXHG 60
           +L++S N+  G IP L   L  L +L LA N   G++P                    +G
Sbjct: 248 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI-FEFTTKNIAYTYQGR 119
            +PP F + +L ES +   S   F     +  +   R  K+L++ F   +  +  +    
Sbjct: 306 AVPPFFGSCSLLESLA--LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 120 VVSYLSGLDLSCNKL-------ICH-------------------ISPQIGNLTRIQTLNL 153
             S L+ LDLS N         +C                    I P + N + + +L+L
Sbjct: 364 SASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           S N L GTIPS+  +L  +  L L  N L G+IP +L+ + TL    +  N+L+G+IP  
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 214 TAQFATFSESSYEGNHFLCGLPLPICR 240
            +     +  S   N     +P  I R
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGR 509

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           S L  L LS N L   I   +G+L++++ L L  N L G IP     +K +E+L L +N 
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP--LPIC 239
           L G+IP  L     L   S+++N L+G+IP+W  +    +      N F   +P  L  C
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 240 RS 241
           RS
Sbjct: 535 RS 536

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 48/253 (18%)
Query: 8   NRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVXXXXXXXXXXXXXXXXXXHGLIPPCFD 67
           N L G IP  +  L+QL +L + H N+ G +P                    G +PP   
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 68  N------TTLHESYSNGSSLKPFET-SFLVKNIYIYREKKILEIFE-FTTKNIAYTYQGR 119
           +       T   +  +G+    + + S L  ++ I R +   +I   F   N+A+    R
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 120 VV-----SYLSGLDLSCNKLICHISP--------QIGNLTRIQTLNLSHNDLIGTIPSTF 166
            +     S L G D +  K+  H++         ++G    +  L+L +N + GT+P   
Sbjct: 207 NMLEGDASVLFGSDKNTQKI--HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 167 SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE 226
           + LK + SL++S+N L G+IP                                F  S+Y 
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-------------------------QGGNLQRFDVSAYA 299
Query: 227 GNHFLCGLPLPIC 239
            N  LCG PLP C
Sbjct: 300 NNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 146 TRIQTLNLSHNDLIG-------TIPSTFSNLKHIESLDLS-YNQLNGKIPLQLVELNTLA 197
           T  QT  +++ DL G        IPS+ +NL ++  L +   N L G IP  + +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 198 VFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSP 242
              + H N+SG IP++ +Q  T     +  N     LP  I   P
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 124 LSGLDLSCNKLICH--ISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           L  LDLS N +      S Q+ NL+ +QTLNLSHN+ +G     F     +E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 182 LNGKIPLQLVE-LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233
           L+   P    + L+ L V ++ +  L        A        + +GNHF  G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  194 bits (495), Expect = 2e-57
 Identities = 69/238 (28%), Positives = 105/238 (44%), Gaps = 7/238 (2%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           IL LS N  +G+IP  +     L  L L  N   G +P  + +        ++ N + G 
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGK 573

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                 N  + +      +L  F      + +     +    I                 
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEF-QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN- 631

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             +  LD+S N L  +I  +IG++  +  LNL HND+ G+IP    +L+ +  LDLS N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC 239
           L+G+IP  +  L  L    +++NNLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 6e-35
 Identities = 62/217 (28%), Positives = 88/217 (40%), Gaps = 33/217 (15%)

Query: 2   ILDLSYNRLNGSIPDLVDG-LSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            L L+ N+  G IPD + G    L+ L L+ N+  G VP      + L+ L LS+NN  G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSF--LVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
            +P         ++      LK  + SF      +          +   +          
Sbjct: 333 ELPM--------DTLLKMRGLKVLDLSFNEFSGELP-------ESLTNLSAS-------- 369

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGN--LTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                L  LDLS N     I P +       +Q L L +N   G IP T SN   + SL 
Sbjct: 370 -----LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           LS+N L+G IP  L  L+ L    +  N L G+IP+ 
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 8e-35
 Identities = 53/211 (25%), Positives = 76/211 (36%), Gaps = 52/211 (24%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L  N   G IP  +   S+L  L L+ N L G +P  L  L++L+ L L  N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
           P                +L+                                        
Sbjct: 459 PQEL---------MYVKTLE---------------------------------------- 469

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
               L L  N L   I   + N T +  ++LS+N L G IP     L+++  L LS N  
Sbjct: 470 ---TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           +G IP +L +  +L    +  N  +G IP  
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (328), Expect = 2e-34
 Identities = 66/220 (30%), Positives = 97/220 (44%), Gaps = 40/220 (18%)

Query: 2   ILDLSYNRLNGSIP-DLVDGLSQLSHLILAHNNLEGKVPVQLCRL-NQLQLLDLSNNNLH 59
            L LS N  +G +P D +  +  L  L L+ N   G++P  L  L   L  LDLS+NN  
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           G I P              ++L+     +L  N              FT         G+
Sbjct: 382 GPILPNLCQNPK-------NTLQEL---YLQNN-------------GFT---------GK 409

Query: 120 V------VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
           +       S L  L LS N L   I   +G+L++++ L L  N L G IP     +K +E
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 174 SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           +L L +N L G+IP  L     L   S+++N L+G+IP+W
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (320), Expect = 2e-33
 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 32/214 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LD+S N  +  IP L D  S L HL ++ N L G     +    +L+LL++S+N   G 
Sbjct: 204 FLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           IPP               SL+          + +   K   EI +F +            
Sbjct: 263 IPP-----------LPLKSLQ---------YLSLAENKFTGEIPDFLSGAC--------- 293

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP-STFSNLKHIESLDLSYN 180
             L+GLDLS N     + P  G+ + +++L LS N+  G +P  T   ++ ++ LDLS+N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 181 QLNGKIPLQLVELNT-LAVFSVAHNNLSGKIPEW 213
           + +G++P  L  L+  L    ++ NN SG I   
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (316), Expect = 6e-33
 Identities = 60/245 (24%), Positives = 91/245 (37%), Gaps = 56/245 (22%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L LS+N L+G+IP  +  LS+L  L L  N LEG++P +L  +  L+ L L  N+L G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           IP    N T                                                   
Sbjct: 482 IPSGLSNCT--------------------------------------------------- 490

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L+ + LS N+L   I   IG L  +  L LS+N   G IP+   + + +  LDL+ N 
Sbjct: 491 -NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRS 241
            NG IP  + + +      +A N ++GK   +        E    GN            +
Sbjct: 550 FNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 242 PVTML 246
            ++  
Sbjct: 606 RLSTR 610

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (305), Expect = 2e-31
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 42/251 (16%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +S N+++G +   V     L  L ++ NN    +P  L   + LQ LD+S N L G  
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                        S  + LK          + I   + +  I     K+           
Sbjct: 240 SRAI---------STCTELK---------LLNISSNQFVGPIPPLPLKS----------- 270

Query: 123 YLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
            L  L L+ NK    I   + G    +  L+LS N   G +P  F +   +ESL LS N 
Sbjct: 271 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 182 LNGKIPLQ-LVELNTLAVFSVAHNNLSGKIPEWTAQFATFSES----SYEGNHFLCGLPL 236
            +G++P+  L+++  L V  ++ N  SG++PE        S S        N+F   +  
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILP 386

Query: 237 PICRSPVTMLK 247
            +C++P   L+
Sbjct: 387 NLCQNPKNTLQ 397

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (305), Expect = 2e-31
 Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 37/216 (17%)

Query: 3   LDLSYNRLNGSIPDLVD--GLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLH 59
           LDLS N L+G +  L      S L  L ++ N L+    V    +LN L++LDLS N++ 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSF--LVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
           G     +              LK    S   +  ++         ++             
Sbjct: 165 GANVVGW------VLSDGCGELKHLAISGNKISGDV---------DVSRCVN-------- 201

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 L  LD+S N     I P +G+ + +Q L++S N L G      S    ++ L++
Sbjct: 202 ------LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           S NQ  G IP     L +L   S+A N  +G+IP++
Sbjct: 255 SSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDF 288

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (297), Expect = 2e-30
 Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 30/213 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLDLSNNNLHG 60
           L LS + +NGS+       + L+ L L+ N+L G V     L   + L+ L++S+N L  
Sbjct: 82  LFLSNSHINGSVSGFK-CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                             +SL+            +      L     +  N+        
Sbjct: 141 PGKV--------SGGLKLNSLE-----------VLD-----LSANSISGANVVGWVLSDG 176

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L +S NK+   +   +     ++ L++S N+    IP    +   ++ LD+S N
Sbjct: 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           +L+G     +     L + +++ N   G IP  
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 5e-29
 Identities = 48/236 (20%), Positives = 73/236 (30%), Gaps = 58/236 (24%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L  N L G IP  +  +  L  LIL  N+L G++P  L     L  + LSNN L G 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           IP                +L                                        
Sbjct: 506 IPKWI---------GRLENLA--------------------------------------- 517

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
                L LS N    +I  ++G+   +  L+L+ N   GTIP+         S  ++ N 
Sbjct: 518 ----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANF 569

Query: 182 LNGKIPLQLVELNTLAVFSVAHN--NLSGKIPEWTAQFATFSESSYEGNHFLCGLP 235
           + GK  + +           A N     G   E   + +T +  +     +     
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 5e-29
 Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 61/216 (28%)

Query: 2   ILDLSYNRLNGSIPD---LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNL 58
           +LDLS N ++G+      L DG  +L HL ++ N + G V   + R   L+ LD+S+NN 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212

Query: 59  HGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
              IP             + S+L+                                    
Sbjct: 213 STGIP----------FLGDCSALQ------------------------------------ 226

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
               +L    +S NKL    S  I   T ++ LN+S N  +G IP     LK ++ L L+
Sbjct: 227 ----HLD---ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLA 277

Query: 179 YNQLNGKIPLQLV-ELNTLAVFSVAHNNLSGKIPEW 213
            N+  G+IP  L    +TL    ++ N+  G +P +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (269), Expect = 1e-26
 Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 47/223 (21%)

Query: 3   LDLSYNRLN---GSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
           +DLS   LN    ++   +  L+ L  L L+++++ G V         L  LDLS N+L 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS 113

Query: 60  GLIPPCFDN------TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA 113
           G +              L+ S +             + +                     
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS--------------------- 152

Query: 114 YTYQGRVVSYLSGLDLSCNKLICHISPQI---GNLTRIQTLNLSHNDLIGTIPSTFSNLK 170
                     L  LDLS N +                ++ L +S N + G +    S   
Sbjct: 153 ----------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200

Query: 171 HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           ++E LD+S N  +  IP  L + + L    ++ N LSG     
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA 242

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 22  SQLSHLILAHNNLE---GKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHE---SY 75
            +++ + L+   L      V   L  L  L+ L LSN++++G +     + +L     S 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 76  SNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLI 135
           ++ S      TS                                  S L  L++S N L 
Sbjct: 110 NSLSGPVTTLTSL------------------------------GSCSGLKFLNVSSNTLD 139

Query: 136 CHIS-PQIGNLTRIQTLNLSHNDLIGTIPSTF---SNLKHIESLDLSYNQLNGKIPLQLV 191
                     L  ++ L+LS N + G     +        ++ L +S N+++G + +   
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS-- 197

Query: 192 ELNTLAVFSVAHNNLSGKIPE 212
               L    V+ NN S  IP 
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 144 NLTRIQTLNLSHNDL---IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200
              ++ +++LS   L      + S+  +L  +ESL LS + +NG +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 201 VAHNNLSGKIPEW 213
           ++ N+LSG +   
Sbjct: 107 LSRNSLSGPVTTL 119

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHN--NLEGKVPVQLCRLNQLQLLDLSNNNL 58
               ++ N + G     +           A N    +G    QL RL+     ++++   
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 59  HGLIPPCFDN 68
            G   P FDN
Sbjct: 621 GGHTSPTFDN 630

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 1e-43
 Identities = 52/261 (19%), Positives = 88/261 (33%), Gaps = 76/261 (29%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L +++  ++G+IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           IP  +          + S L                                        
Sbjct: 165 IPDSY---------GSFSKLFTS------------------------------------- 178

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
                + +S N+L   I P   NL  +  ++LS N L G     F + K+ + + L+ N 
Sbjct: 179 -----MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ-----------------------FA 218
           L   +  ++     L    + +N + G +P+   Q                         
Sbjct: 233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 219 TFSESSYEGNHFLCGLPLPIC 239
            F  S+Y  N  LCG PLP C
Sbjct: 292 RFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  112 bits (282), Expect = 1e-29
 Identities = 52/215 (24%), Positives = 76/215 (35%), Gaps = 57/215 (26%)

Query: 3   LDLSYNRLNGS--IPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
           LDLS   L     IP  +  L  L+ L +   NNL G +P  + +L QL  L +++ N+ 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           G I                    P   S +                              
Sbjct: 115 GAI--------------------PDFLSQIKT---------------------------- 126

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH-IESLDLS 178
               L  LD S N L   + P I +L  +  +    N + G IP ++ +      S+ +S
Sbjct: 127 ----LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
            N+L GKIP     LN LA   ++ N L G     
Sbjct: 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.4 bits (228), Expect = 7e-22
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 40/190 (21%)

Query: 31  HNNLEGKVPVQLCRLNQLQLLDLSNNNLHG--LIPPCFDN----TTLHESYSNG-SSLKP 83
           +    G +     +  ++  LDLS  NL     IP    N      L+    N      P
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 84  FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIG 143
              + L                                + L  L ++   +   I   + 
Sbjct: 95  PAIAKL--------------------------------TQLHYLYITHTNVSGAIPDFLS 122

Query: 144 NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVF-SVA 202
            +  + TL+ S+N L GT+P + S+L ++  +    N+++G IP      + L    +++
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 203 HNNLSGKIPE 212
            N L+GKIP 
Sbjct: 183 RNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.0 bits (214), Expect = 6e-20
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 124 LSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSH-NDLIGTIPSTFSNLKHIESLDLSYN 180
           ++ LDLS   L     I   + NL  +  L +   N+L+G IP   + L  +  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
            ++G IP  L ++ TL     ++N LSG +P  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.7 bits (169), Expect = 7e-14
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLS- 178
           S+L   D      +  +        R+  L+LS  +L     IPS+ +NL ++  L +  
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
            N L G IP  + +L  L    + H N+SG IP++
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH- 59
             LDL  NR+ G++P  +  L  L  L ++ NNL G++P Q   L +  +   +NN    
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 60  -GLIPPC 65
              +P C
Sbjct: 306 GSPLPAC 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 1e-26
 Identities = 49/260 (18%), Positives = 83/260 (31%), Gaps = 35/260 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG--KVPVQLCRLNQLQLLDLSNNNLH 59
            + LSYN+      +    +  L  L+L    L+     P     L  L +LDLSNNN+ 
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 60  GLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
            +     +       L   ++N                        L             
Sbjct: 494 NINDDMLEGLEKLEILDLQHNN------------------------LARLWKHANPGGPI 529

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
           Y  + +S+L  L+L  N           +L  ++ ++L  N+L     S F+N   ++SL
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 176 DLSYNQLNGKIPLQL-VELNTLAVFSVAHNNLSGKIP--EWTAQFA--TFSESSYEGNHF 230
           +L  N +              L    +  N          W   +   T +      +H+
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

Query: 231 LCGLPLPICRSPVTMLKAST 250
           LC  P      PV +   S+
Sbjct: 650 LCNTPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (253), Expect = 1e-24
 Identities = 48/224 (21%), Positives = 80/224 (35%), Gaps = 21/224 (9%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L+L +N L+          + L+ L L  N+++        +   L  LDLS+N L   
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 62  IPPCFDNTT------LHESYSNGSSLKPFETSFLVKNIYIY-REKKILEIFEFTTKNIAY 114
                          L  +       +  +         +     +I E        I  
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI-- 194

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIG---NLTRIQTLNLSHNDLIGTIPSTFSNLK- 170
                    L GL L+  +L   ++ ++      T I+ L+LS++ L  T  +TF  LK 
Sbjct: 195 -------GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 171 -HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
            ++  LDLSYN LN         L  L  F + +NN+       
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (251), Expect = 3e-24
 Identities = 48/252 (19%), Positives = 74/252 (29%), Gaps = 28/252 (11%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLHG 60
           IL+L+ N+++    D    L  L  L L  N +  ++  Q    L  +  + LS N    
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 61  LIPPCFDNTT------LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
           L    F          L           P     L            L I + +  NIA 
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN----------LTILDLSNNNIAN 494

Query: 115 TYQGRVVS--YLSGLDLSCNKL--------ICHISPQIGNLTRIQTLNLSHNDLIGTIPS 164
                +     L  LDL  N L               +  L+ +  LNL  N        
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESS 224
            F +L  ++ +DL  N LN           +L   ++  N ++    +            
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 225 Y-EGNHFLCGLP 235
               N F C   
Sbjct: 615 DMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (250), Expect = 4e-24
 Identities = 43/227 (18%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG--KVPVQLCRLNQLQLLDLSNNNLH 59
            LDLS+N L+ +       L  L  L+L++N ++      + +   + L+ L+LS+N + 
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 60  GLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFT-TKNIAY 114
              P CF        L  +          +    + N  I    + L +     +     
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI----RNLSLSNSQLSTTSNT 240

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
           T+ G   + L+ LDLS N L    +     L +++   L +N++      +   L ++  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 175 LDLSYN---------QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           L+L  +          L          L  L   ++  N++ G    
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.2 bits (240), Expect = 7e-23
 Identities = 44/221 (19%), Positives = 72/221 (32%), Gaps = 41/221 (18%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LD+ +N ++   P+L   L  L  L L HN L             L  L L +N++  +
Sbjct: 53  SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F       TL  S++  SS K      L                            
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL---------------------------- 144

Query: 118 GRVVSYLSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
                 L  L LS NK+  +      I   + ++ L LS N +    P  F  +  +  L
Sbjct: 145 ----ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 176 DLSYNQLNGKIP---LQLVELNTLAVFSVAHNNLSGKIPEW 213
            L+  QL   +       +   ++   S++++ LS      
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 1e-22
 Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 38/222 (17%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L+L++N+L           SQL+ L +  N +    P    +L  L++L+L +N L  L
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F      T LH   ++   +K                                   
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN-------------------------- 122

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH--IESL 175
                 L  LDLS N L          L  +Q L LS+N +            +  ++ L
Sbjct: 123 ------LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQF 217
           +LS NQ+    P     +  L    + +  L   + E     
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 30/232 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGL--SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           L LS ++L+ +      GL  + L+ L L++NNL          L QL+   L  NN+  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 61  LIPPCFDN-------------TTLHESYSNGSSLKPFETSFLVKNIYIY-REKKILEIFE 106
           L                    T    S ++   +  F   +L    ++   +  I  I  
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 107 FTTKNIAYTYQGRVVSYLSGLDLSCNKL----ICHISPQIGNLTRIQTLNLSHNDLIGTI 162
                +           L  L LS +      + + +      + +  LNL+ N +    
Sbjct: 347 NMFTGL---------INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 163 PSTFSNLKHIESLDLSYNQLNGKIPLQ-LVELNTLAVFSVAHNNLSGKIPEW 213
              FS L H+E LDL  N++  ++  Q    L  +    +++N         
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 41/218 (18%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           + D S+ +L   +PD  D  + ++ L L HN L         R +QL  LD+  N +  L
Sbjct: 8   VADCSHLKLT-QVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P           L+  ++  S L     +F                             
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFC---------------------------- 96

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
               + L+ L L  N +    +        + TL+LSHN L  T   T   L++++ L L
Sbjct: 97  ----TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 178 SYNQLNG--KIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           S N++       L +   ++L    ++ N +    P  
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 7e-18
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 36/224 (16%)

Query: 2   ILDLSYNRLNGSIPD---LVDGLSQLSHLILAHNNLEGKVPVQL--CRLNQLQLLDLSNN 56
            L L+  +L  S+ +   L    + + +L L+++ L           +   L +LDLS N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 57  NLHGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNI 112
           NL+ +    F            Y+N   L       L            +          
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN----------VRYLNLK---- 304

Query: 113 AYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHI 172
                       +   +S   L          L  ++ LN+  ND+ G   + F+ L ++
Sbjct: 305 ---------RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 173 ESLDLSYNQLNGKIP----LQLVELNTLAVFSVAHNNLSGKIPE 212
           + L LS +  + +         +  + L + ++  N +S    +
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 23  QLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN----TTLHESYSNG 78
                  +H  L  +VP  L     + +L+L++N L  L    F      T+L   ++  
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 79  SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHI 138
           S L+P     L                                  L  L+L  N+L    
Sbjct: 62  SKLEPELCQKL--------------------------------PMLKVLNLQHNELSQLS 89

Query: 139 SPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAV 198
                  T +  L+L  N +     + F   K++ +LDLS+N L+       V+L  L  
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 199 FSVAHNNLSGKIPE 212
             +++N +     E
Sbjct: 150 LLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 1   MILDLSYNRLN--------GSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLD 52
            ILDL +N L         G     + GLS L  L L  N  +         L +L+++D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 53  LSNNNLHGLIPPCFDNTT 70
           L  NNL+ L    F+N  
Sbjct: 567 LGLNNLNTLPASVFNNQV 584

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 3e-25
 Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 38/215 (17%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLHGL 61
           LDLS+N +     +   GL QL HL   H+NL+          L  L  LD+S+ +    
Sbjct: 378 LDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F+       L  + ++                         +IF            
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFL------------------PDIFTELRN------- 471

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 L+ LDLS  +L         +L+ +Q LN+SHN+        +  L  ++ LD 
Sbjct: 472 ------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 178 SYNQLNGKIPLQLVELNT-LAVFSVAHNNLSGKIP 211
           S N +      +L    + LA  ++  N+ +    
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 45/220 (20%), Positives = 74/220 (33%), Gaps = 42/220 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDLS+N L            +L  L L+   ++         L+ L  L L+ N +  L
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F        L    +N +SL+ F    L                            
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-------------------------- 125

Query: 118 GRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE--- 173
                 L  L+++ N +    +     NLT ++ L+LS N +     +    L  +    
Sbjct: 126 ------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 174 -SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            SLDLS N +N   P    E+  L   ++ +N  S  + +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 8e-20
 Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 39/217 (17%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNL--EGKVPVQLCRLNQLQLLDLSNNNLHG 60
           L  + N+   +  ++   L  L  L L+ N L  +G           L+ LDLS N +  
Sbjct: 330 LTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 61  LIPPCFDNTTLHE---SYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
           +         L      +SN   +  F     ++N                         
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN------------------------- 422

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI-PSTFSNLKHIESLD 176
                 L  LD+S        +     L+ ++ L ++ N       P  F+ L+++  LD
Sbjct: 423 ------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           LS  QL    P     L++L V +++HNN        
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 31/216 (14%)

Query: 2   ILDLSYNRLNGSIP-DLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            LD  ++ L       +   L  L +L ++H +           L+ L++L ++ N+   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
              P          ++   +L       L +        ++ ++      ++        
Sbjct: 460 NFLPDI--------FTELRNL---TFLDLSQC-------QLEQLSPTAFNSL-------- 493

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNL-KHIESLDLSY 179
            S L  L++S N      +     L  +Q L+ S N ++ +      +    +  L+L+ 
Sbjct: 494 -SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 180 NQLNGKIPLQ--LVELNTLAVFSVAHNNLSGKIPEW 213
           N        Q  L  +       V    +    P  
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 44/217 (20%), Positives = 76/217 (35%), Gaps = 18/217 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +LDLS   +          LS LS LIL  N ++         L+ LQ L     NL  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 62  IPPCFDN----TTLHESYSNGSSLKP---FETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
                 +      L+ +++   S K    F     ++++ +    KI  I+    + +  
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 174

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPST-FSNLKHIE 173
                +      LDLS N  +  I P      R+  L L +N     +  T    L  +E
Sbjct: 175 MPLLNLS-----LDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 174 SLDLSYNQLNGKIPLQLVELNT---LAVFSVAHNNLS 207
              L   +   +  L+  + +    L   ++    L+
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 41/221 (18%), Positives = 64/221 (28%), Gaps = 47/221 (21%)

Query: 3   LDLSYNRLN------GSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNN 56
           L +   RL         I DL + L+ +S   L    +E             Q L+L N 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC 314

Query: 57  NLHGLIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
                      +   L  + + G +                                   
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL---------------------------- 346

Query: 116 YQGRVVSYLSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                   L  LDLS N L      S      T ++ L+LS N +I T+ S F  L+ +E
Sbjct: 347 ------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 174 SLDLSYNQLNGKIPLQ-LVELNTLAVFSVAHNNLSGKIPEW 213
            LD  ++ L         + L  L    ++H +        
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 41/218 (18%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG-KVPVQLCRLNQLQLLDLSNNNLHG 60
            L      L       +  L  L  L +AHN ++  K+P     L  L+ LDLS+N +  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
           +         LH+      SL       L  N        +  I     K I        
Sbjct: 164 IYCTDLRV--LHQMPLLNLSLD------LSLN-------PMNFIQPGAFKEI-------- 200

Query: 121 VSYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTI---PSTFSNLKHIESLD 176
              L  L L  N    ++    I  L  ++   L   +            S L+ + +L 
Sbjct: 201 --RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 177 LSYNQLN------GKIPLQLVELNTLAVFSVAHNNLSG 208
           +   +L         I      L  ++ FS+    +  
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 32/228 (14%)

Query: 3   LDLSYNRLNGSIP-DLVDGLSQLSHLILAHNNLEGKVPVQ---------LCRL----NQL 48
           L L  N  + ++    + GL+ L    L       +  ++         LC L     +L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 49  QLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFT 108
             LD   +++  L     + ++          +K F  +F  +++ +       +  +F 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN----CKFGQFP 320

Query: 109 TKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL--IGTIPSTF 166
           T  +           L  L  + NK     S    +L  ++ L+LS N L   G    + 
Sbjct: 321 TLKL---------KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 167 SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWT 214
                ++ LDLS+N +   +    + L  L      H+NL        
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 20/91 (21%), Positives = 34/91 (37%)

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
                LDLS N L    S    +   +Q L+LS  ++       + +L H+ +L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           +          L++L        NL+     
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 50/177 (28%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDLS  +L    P   + LS L  L ++HNN           LN LQ+LD S N++   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                              L+ F +S              L                   
Sbjct: 534 KK---------------QELQHFPSS--------------LAFL---------------- 548

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
             L+  D +C    C     +  +   + L +    +    PS    +  + SL+++
Sbjct: 549 -NLTQNDFACT---CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 146 TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN 205
              + L+LS N L      +F +   ++ LDLS  ++          L+ L+   +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 206 LSGKIPEW 213
           +       
Sbjct: 88  IQSLALGA 95

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 8e-24
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 33/229 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
            +  Y +   +       L  L+ + L +     ++P  L  L +LQ L+++ N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSF-----LVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               D T L +    G  ++ F   +        +  + +  K                 
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK----------------- 574

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 L  LD   NK+        G   ++  L L +N +        +    +E L  
Sbjct: 575 ------LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 178 SYNQLNGKIP--LQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESS 224
           S+N+L   IP       +  +     ++N +  +    +     +   +
Sbjct: 627 SHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 1e-23
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 30/231 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
            +   +         +D   +++ L LA    +G+VP  + +L +L++L    ++     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
               D     +               +  +       + L + +     I    + + + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDY-----DQRLNLSDLLQDAINRNPEMKPIK 418

Query: 123 YLSGLDLSCNKL------ICHISPQIGNLTRIQTLNLSHNDL------------------ 158
             S + L   ++      I  IS  I  LT++Q +  +++                    
Sbjct: 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

Query: 159 -IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
                  ++SNLK +  ++L       ++P  L +L  L   ++A N    
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.4 bits (219), Expect = 4e-20
 Identities = 29/244 (11%), Positives = 74/244 (30%), Gaps = 35/244 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L+     G +PD +  L++L  L    ++      +         + +   + +    
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 63  PPCF----DNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
              F        L +   +  +  P E   + K+  I  +   +         I+   Q 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 119 RVVSYLSGLDLSCNKL-------------------ICHISPQIGNLTRIQTLNLSHNDLI 159
             ++ L  +  + +                       +      NL  +  + L +   +
Sbjct: 447 --LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 160 GTIPSTFSNLKHIESLDLSYNQLNG---------KIPLQLVELNTLAVFSVAHNNLSGKI 210
             +P    +L  ++SL+++ N+            ++         + +F + +NNL    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 211 PEWT 214
              +
Sbjct: 565 ASAS 568

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.9 bits (215), Expect = 1e-19
 Identities = 35/253 (13%), Positives = 88/253 (34%), Gaps = 24/253 (9%)

Query: 3   LDLSYNRLNGSIPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQL-----LDLSN 55
           L  S+N+L   IP++ +   +  +  +  ++N +  +     C ++  +      + LS 
Sbjct: 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 56  NNLHGLIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT---KN 111
           N +       F   + +     + + +     + L      Y+   +L   +       +
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 112 IAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH------NDLIGTIPST 165
           ++  ++   + YLS +D+S N        Q  N ++++   + H      N ++   P+ 
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 166 FSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESS- 224
            +    +  L +  N +  K+  +L     L +  +A N            +        
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 225 -YEGNHFLCGLPL 236
            Y+    + G   
Sbjct: 859 LYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 6e-19
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 47/230 (20%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLDLSNNNLH 59
            L L YN++     D      Q+  L  +HN L+  +P       +  +  +D S N + 
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR---EKKILEIFEFTTKNIAYTY 116
                   +   ++  +                + +     +K   E+F   +       
Sbjct: 658 SEGRNISCSMDDYKGIN-------------ASTVTLSYNEIQKFPTELFATGSP------ 698

Query: 117 QGRVVSYLSGLDLSCNKL-------ICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSN 168
                  +S + LS N +       +        N   + T++L  N L         + 
Sbjct: 699 -------ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH------NNLSGKIPE 212
           L ++ ++D+SYN  +   P Q +  + L  F + H      N +  + P 
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 7e-18
 Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 30/226 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG---------KVPVQLCRLNQLQLLD 52
            ++L        +PD +  L +L  L +A N             ++        ++Q+  
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 53  LSNNNLHGLIPP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEF 107
           +  NNL                 L   ++    L+ F T+  + ++ +    +I EI E 
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY-NQIEEIPED 613

Query: 108 TTKNIAYTYQGRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSHNDLIGTIPSTF 166
                           + GL  S NKL          ++  + +++ S+N +     +  
Sbjct: 614 F---------CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 167 S-----NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
                    +  ++ LSYN++           + ++   +++N ++
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 3e-17
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 22/226 (9%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           I  + YN L           + +L  L   HN +   +        +L  L L  N +  
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE 609

Query: 61  LIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEI----FEFTTKNIAYT 115
           +       T  +     + + LK     F  K++        ++          +NI+ +
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV---YVMGSVDFSYNKIGSEGRNISCS 666

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL-------IGTIPSTFSN 168
                    S + LS N++    +      + I T+ LS+N +       +      + N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 169 LKHIESLDLSYNQLNGKIP--LQLVELNTLAVFSVAHNNLSGKIPE 212
              + ++DL +N+L   +    +   L  L+   V++N  S   P 
Sbjct: 727 TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 25/223 (11%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHL-ILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           +L  + NR     P   D    L    I    N    +   + RL +LQ++  +N+    
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIY-REKKILEIFEFTTKNIAYTYQGR 119
                 D    +  Y+     +    S L     +       +        ++       
Sbjct: 463 D-NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL------- 514

Query: 120 VVSYLSGLDLSCNKL---------ICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNL 169
               L  L+++CN+             ++       +IQ   + +N+L     S +   +
Sbjct: 515 --PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 170 KHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
             +  LD  +N++   +         L    + +N +   IPE
Sbjct: 573 VKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 25/214 (11%), Positives = 49/214 (22%), Gaps = 58/214 (27%)

Query: 2   ILDLSYNRL-------NGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDL 53
            + LS N +                    L+ + L  N L       +   L  L  +D+
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760

Query: 54  SNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA 113
           S N            ++      N S L                                
Sbjct: 761 SYNCF----------SSFPTQPLNSSQL-------------------------------- 778

Query: 114 YTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                +        D   N+++      I     +  L +  ND+          L    
Sbjct: 779 -----KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI-- 831

Query: 174 SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            LD++ N         +       ++ + ++   
Sbjct: 832 -LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 11/86 (12%), Positives = 25/86 (29%)

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
            +   +         + N  R+  L+L+     G +P     L  ++ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 187 PLQLVELNTLAVFSVAHNNLSGKIPE 212
            L   E  T  +     + +     +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKK 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 31/214 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            ++L  +       +     S L  L L   +L  ++P  L  L+ L+ L LS N    L
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                 N           SL          ++ I    K LE+     +N         +
Sbjct: 317 CQISASNFP---------SLT---------HLSIKGNTKRLELGTGCLEN---------L 349

Query: 122 SYLSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
             L  LDLS + +      + Q+ NL+ +Q+LNLS+N+ +      F     +E LDL++
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 180 NQLNGKIPL-QLVELNTLAVFSVAHNNLSGKIPE 212
            +L  K        L+ L V +++H+ L     +
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 8e-20
 Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 35/211 (16%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDLSNNNLHGL 61
           L+LSYN       +      QL  L LA   L+ K        L+ L++L+LS++ L   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               FD       L+   ++       +T+ L                            
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL---------------------------- 472

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
            + +  L  L LS   L         +L  +  ++LSHN L  +     S+LK I  L+L
Sbjct: 473 -QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNL 530

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
           + N ++  +P  L  L+     ++  N L  
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 6e-19
 Identities = 51/241 (21%), Positives = 80/241 (33%), Gaps = 43/241 (17%)

Query: 2   ILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
            LDLS++ +  S      +  LS L  L L++N              QL+LLDL+   L 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 60  GLIPP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
                  F N      L+ S+S            L                         
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA----------------------- 450

Query: 115 TYQGRVVSYLSGLDLSCNKL---ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
                    L  L+L  N         +  +  L R++ L LS  DL       F++LK 
Sbjct: 451 ---------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501

Query: 172 IESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL 231
           +  +DLS+N+L       L  L  +   ++A N++S  +P      +     +   N   
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

Query: 232 C 232
           C
Sbjct: 561 C 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 7e-19
 Identities = 34/217 (15%), Positives = 63/217 (29%), Gaps = 21/217 (9%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L+ N L       + G   L HL      +     + L     L+ L L +N++  +
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVK--NIYIYREK-KILEIFEFTTKNIAY 114
             P          L    +    L   + S L +  N+ +      I  I      +   
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-- 202

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGN--LTRIQTLNLSHNDLIGTIPSTFSNLK-- 170
                       L+    + +  I   + N  +  +        D     P+ F  L   
Sbjct: 203 --------VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 171 HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            +ES++L  +             + L    +   +LS
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 6e-18
 Identities = 47/222 (21%), Positives = 77/222 (34%), Gaps = 43/222 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLH- 59
            L LS N+              L+HL +  N    ++    L  L  L+ LDLS++++  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 60  -GLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
                    N     +L+ SY+   SLK                    E F+   +    
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKT-------------------EAFKECPQ---- 401

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISP-QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                    L  LDL+  +L    +     NL  ++ LNLSH+ L  +    F  L  ++
Sbjct: 402 ---------LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 174 SLDLSYNQLNGKIPLQ---LVELNTLAVFSVAHNNLSGKIPE 212
            L+L  N        +   L  L  L +  ++  +LS     
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 35/213 (16%), Positives = 62/213 (29%), Gaps = 31/213 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+ S+N L          L  L+ L L    +           ++L  L L+ N L  +
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                             +LK     F ++         I  I      N          
Sbjct: 97  AETALSGPK---------ALKHL---FFIQT-------GISSIDFIPLHNQ--------- 128

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE--SLDLSY 179
             L  L L  N +     P+     +++ L+  +N +        S+L+     SL+L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           N + G I     +       +         I +
Sbjct: 189 NDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 19/222 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDL+  ++     D      +L  L+L  N L       L     L+ L      +  +
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 62  IPPCFDN----TTLHESYSNGSSLKP--FETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
                 N     +L+   ++ SS+K      +  +K +          I   + ++++  
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA----IHYLSKEDMSSL 176

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS--TFSNLKHIE 173
            Q   +S    L+L+ N  I  I P   +    Q+LN      +  I      S ++ + 
Sbjct: 177 QQATNLS----LNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 174 SLDLSYNQLNGKIPLQLVEL--NTLAVFSVAHNNLSGKIPEW 213
                        P     L   ++   ++  +         
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 36/251 (14%), Positives = 66/251 (26%), Gaps = 40/251 (15%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
             +     LN  IP      +    L  + N L         RL  L  LDL+   ++ +
Sbjct: 16  TYNCENLGLN-EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F +     TL  + +    +     S                              
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA-------------------------- 106

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 L  L      +       + N   +++L L  N +           + ++ LD 
Sbjct: 107 ------LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVA-HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
             N ++      +  L      S+  + N    I       A F   ++ G   L  +  
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 237 PICRSPVTMLK 247
            +  S +  L 
Sbjct: 221 GLKNSTIQSLW 231

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 42/209 (20%), Positives = 75/209 (35%), Gaps = 36/209 (17%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ---LCRLNQLQLLDLSNNNL 58
           +L+LS++ L+ S   L DGL  L HL L  N+       +   L  L +L++L LS  +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 59  HGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
             +    F +            +       L  N       ++         ++   Y  
Sbjct: 489 SSIDQHAFTSLK---------MMN---HVDLSHN-------RLTSSSIEALSHLKGIY-- 527

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
                   L+L+ N +   +   +  L++ +T+NL  N L  T     SN+  +E    +
Sbjct: 528 --------LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKEN 575

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
             +L             L    ++   LS
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 45/230 (19%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLDLSNNNLHG 60
           L+L+YN++     +      Q+ +L  AHN L+  +P       ++ +  +D S N +  
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR---EKKILEIFEFTTKNIAYTYQ 117
           +    FD   L  +   G ++          +I +      K   E+F   +        
Sbjct: 417 VDGKNFDP--LDPTPFKGINVS---------SINLSNNQISKFPKELFSTGSP------- 458

Query: 118 GRVVSYLSGLDLSCNKL-------ICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNL 169
                 LS ++L  N L       +   +    N   + +++L  N L         + L
Sbjct: 459 ------LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 170 KHIESLDLSYNQLNGKIPLQLVELNTLAVFS------VAHNNLSGKIPEW 213
            ++  +DLSYN  +   P Q +  +TL  F          N    + PE 
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 7e-21
 Identities = 22/248 (8%), Positives = 66/248 (26%), Gaps = 47/248 (18%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG----KVPVQLCRLNQLQLLDLSNNNL 58
           L L     +G +PD +  L++L  L L  +  +       P  +      +       + 
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 59  HGLIPPCF------DNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNI 112
                         D      +           +   +K+  I +    +         +
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 113 AYTYQGRVVSYLSGLDLSCNKLICHISPQ-------------------IGNLTRIQTLNL 153
                    + L    +  +  +     +                     NL  +  + +
Sbjct: 206 ---------TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 154 SHNDLIGTIPSTFSNLKHIESLDLSYNQL--------NGKIPLQLVELNTLAVFSVAHNN 205
            +   +  +P+    L  ++ ++++ N+         + +          + +  + +NN
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 206 L-SGKIPE 212
           L +  +  
Sbjct: 317 LKTFPVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 7e-21
 Identities = 35/213 (16%), Positives = 82/213 (38%), Gaps = 25/213 (11%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
            +  Y +   +     D L  L+ + + +     K+P  L  L ++QL++++ N      
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT-KNIAYTYQGRVV 121
               D   L ++   G  ++          IYI     +      T+ + +         
Sbjct: 290 QLKDDWQALADA-PVGEKIQ---------IIYI-GYNNLKTFPVETSLQKM--------- 329

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  L+   N+L   + P  G+  ++ +LNL++N +     +     + +E+L  ++N+
Sbjct: 330 KKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 182 LNGKIP--LQLVELNTLAVFSVAHNNLSGKIPE 212
           L   IP       ++ ++    ++N +     +
Sbjct: 389 LKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 9e-21
 Identities = 34/229 (14%), Positives = 62/229 (27%), Gaps = 68/229 (29%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG-------KVPVQLCRLNQLQLLDLS 54
            ++LS N+++    +L    S LS + L  N L                    L  +DL 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 55  NNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
            N L   +   F  TTL                                           
Sbjct: 497 FNKLTK-LSDDFRATTL------------------------------------------- 512

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH------NDLIGTIPSTFSN 168
                   YL G+DLS N        Q  N + ++   + +      N  +   P   + 
Sbjct: 513 -------PYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQF 217
              +  L +  N +   +  ++     ++V  +  N        +   +
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 24/221 (10%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
             ++ +    SI        + + +    NN+   V   + RL +L+   + N+      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVK--NIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                     E      +    +   L    ++ +Y    + ++  F             
Sbjct: 223 ICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKA---------- 271

Query: 121 VSYLSGLDLSCNKLI--------CHISPQIGNLTRIQTLNLSHNDLI-GTIPSTFSNLKH 171
           +  +  ++++CN+ I                   +IQ + + +N+L    + ++   +K 
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 172 IESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           +  L+  YNQL GK+P        LA  ++A+N ++     
Sbjct: 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 45/227 (19%)

Query: 2   ILDLSYNRL-NGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           I+ + YN L    +   +  + +L  L   +N LEGK+P       +L  L+L+ N +  
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

Query: 61  LIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           +       T  +       + LK     F  K++                          
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV-------------------------- 401

Query: 120 VVSYLSGLDLSCNKL-------ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHI 172
             S +S +D S N++          + P       + ++NLS+N +       FS    +
Sbjct: 402 --SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 173 ESLDLSYNQLNG-------KIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            S++L  N L                    L    +  N L+    +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.7 bits (210), Expect = 7e-19
 Identities = 24/200 (12%), Positives = 62/200 (31%), Gaps = 14/200 (7%)

Query: 19  DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCF-----DNTTLHE 73
           +   +++ L L      G+VP  + +L +L++L L ++                N +  +
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 74  SYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNK 133
                   +     +  +  +    K  +            +   R+    + +    N 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS---RITLKDTQIGQLSNN 194

Query: 134 LICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVEL 193
           +   +S  +  LT+++   + ++  +                +  Y Q      L+   L
Sbjct: 195 I-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNL 248

Query: 194 NTLAVFSVAHNNLSGKIPEW 213
             L    V +     K+P +
Sbjct: 249 KDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 30/233 (12%), Positives = 76/233 (32%), Gaps = 56/233 (24%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNL--------EGKVPVQLCRLNQLQLLDLS 54
           +++        +P  +  L ++  + +A N          + +         ++Q++ + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 55  NNNLHGL-IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT 109
            NNL    +            L   Y+      P                          
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-------------------AFGSEI- 353

Query: 110 KNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS-- 167
                         L+ L+L+ N++    +   G   +++ L+ +HN L   IP+ F   
Sbjct: 354 -------------KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAK 399

Query: 168 NLKHIESLDLSYNQLNG-------KIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           ++  + ++D SYN++          +     +   ++  ++++N +S    E 
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 27/215 (12%), Positives = 52/215 (24%), Gaps = 60/215 (27%)

Query: 2   ILDLSYNRLNG-------SIPDLVDGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLD 52
            ++L  N L            +       L+ + L  N L   +    +   L  L  +D
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGID 519

Query: 53  LSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNI 112
           LS N+     P             N S+L                               
Sbjct: 520 LSYNSFSK-FPTQP---------LNSSTL------------------------------- 538

Query: 113 AYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHI 172
                 +     +  D   N+ +      I     +  L +  ND+         N+   
Sbjct: 539 ------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI--- 589

Query: 173 ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
             LD+  N         +       ++ + ++   
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 128 DLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG--- 184
           +   +         + +  R+  L+L      G +P     L  +E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 185 -KIPLQLVELNTLAVFSVAHNNLSGKIP 211
              P  +    +         +      
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFV 150

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.2 bits (219), Expect = 4e-20
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 37/211 (17%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLHG 60
            LDLS+N     +     GL +L HL   H+ L+          L +L  LD+S  N   
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 61  LIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
                F       TL  + ++                          +F  TT       
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTL------------------SNVFANTTN------ 474

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                  L+ LDLS  +L          L R+Q LN+SHN+L+    S ++ L  + +LD
Sbjct: 475 -------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            S+N++     +      +LA F++ +N+++
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 47/238 (19%), Positives = 77/238 (32%), Gaps = 41/238 (17%)

Query: 3   LDLSYNRLNGSIPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           LDLS N L+ S        G + L HL L+ N     +      L +LQ LD  ++ L  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413

Query: 61  LIPP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
           +     F +      L  SY+N                          IF   T      
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFD-------------------GIFLGLTS----- 449

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
                   L+ L ++ N    +    +  N T +  L+LS   L       F  L  ++ 
Sbjct: 450 --------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
           L++S+N L         +L +L+    + N +            + +  +   N   C
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 42/220 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            +DLS+N L           S+L  L L+   +E         L+ L  L L+ N +   
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P  F        L    +  +SL+ F    L+                           
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLIT-------------------------- 129

Query: 118 GRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH----I 172
                 L  L+++ N +    +     NLT +  ++LS+N +     +    L+      
Sbjct: 130 ------LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 173 ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            SLD+S N ++  I  Q  +   L   ++  N  S  I +
Sbjct: 184 LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 35/201 (17%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L+ N +    P    GL+ L +L+     L       + +L  L+ L++++N +H  
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 62  -IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
            +P  F N      +  SY+   ++   +  FL +N  +                     
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS------------------ 185

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPST-FSNLKHIESL 175
                     LD+S N  I  I  Q     ++  L L  N     I  T   NL  +   
Sbjct: 186 ----------LDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 176 DLSYNQLNGKIPLQLVELNTL 196
            L   +   +  L++ E + +
Sbjct: 235 RLILGEFKDERNLEIFEPSIM 255

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 38/222 (17%), Positives = 73/222 (32%), Gaps = 23/222 (10%)

Query: 2   ILDLSYNRLNGSI------PDLVDGLSQLS--HLILAHNNLEGKVPVQLCRLNQLQLLDL 53
           +  L               P +++GL  ++     L + N      V+   L  +  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 54  SNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA 113
           +  ++   +     +            LK F T  L            L+    T    +
Sbjct: 293 AGVSIKY-LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----------LKSLTLTMNKGS 341

Query: 114 YTYQGRVVSYLSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
            +++   +  LS LDLS N L      S        ++ L+LS N  I  + + F  L+ 
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE 400

Query: 172 IESLDLSYNQLNGKIPLQ-LVELNTLAVFSVAHNNLSGKIPE 212
           ++ LD  ++ L         + L  L    +++ N       
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 40/199 (20%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
                 +L+  +PD  D  S   ++ L+ N L+          ++LQ LDLS   +  + 
Sbjct: 16  YQCMDQKLS-KVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
              +      + L  + +   S  P                     F   T         
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSP-------------------GSFSGLTS-------- 105

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIESLDL 177
                L  L     KL    S  IG L  ++ LN++HN +    +P+ FSNL ++  +DL
Sbjct: 106 -----LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 178 SYNQLNGKIPLQLVELNTL 196
           SYN +       L  L   
Sbjct: 161 SYNYIQTITVNDLQFLREN 179

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 33/213 (15%), Positives = 58/213 (27%), Gaps = 34/213 (15%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L +   +L    P L   L  L  L L  N     +  +   L  L  LDLS N L   
Sbjct: 311 SLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFS 365

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               + +          +SL+           ++        I                +
Sbjct: 366 GCCSYSDLGT-------NSLR-----------HLDLSFNGAIIMSANFMG---------L 398

Query: 122 SYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
             L  LD   + L          +L ++  L++S+ +        F  L  + +L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 181 QLNGKIPLQ-LVELNTLAVFSVAHNNLSGKIPE 212
                           L    ++   L      
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 39/222 (17%), Positives = 67/222 (30%), Gaps = 31/222 (13%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-LNQLQLLDLS----- 54
           + LD+S N ++  I D      +L  L L  N     +     + L  L +  L      
Sbjct: 184 LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 55  -NNNLHGLIPPCFDN------TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEF 107
              NL    P   +            +Y+N  S    +   L            +     
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN----------VSAMSL 292

Query: 108 TTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167
              +I Y            L +   + +        +L  +++L L+ N    +I     
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTL--DLPFLKSLTLTMNKG--SISFKKV 347

Query: 168 NLKHIESLDLSYNQLNGKIPLQLVELNT--LAVFSVAHNNLS 207
            L  +  LDLS N L+        +L T  L    ++ N   
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 34/91 (37%)

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           S    +DLS N L    S    N + +Q L+LS  ++       +  L H+ +L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           +    P     L +L         L+     
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESF 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            + ++LS N L      +FSN   ++ LDLS  ++          L+ L+   +  N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 208 GKIPEW 213
              P  
Sbjct: 94  SFSPGS 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 18/211 (8%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L+LSYN L         GL +++++ L  N++          L +LQ LDL +N L  + 
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI- 377

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                  ++ + + +G+ L       L  N        ++ + E   +N+   Y    V 
Sbjct: 378 ---HFIPSIPDIFLSGNKLVTLPKINLTAN--------LIHLSENRLENLDILYFLLRVP 426

Query: 123 YLSGLDLSCNKL-ICHISPQIGNLTRIQTLNLSHNDLIGTI-----PSTFSNLKHIESLD 176
           +L  L L+ N+   C           ++ L L  N L            F  L H++ L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           L++N LN   P     L  L   S+  N L+
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 50/243 (20%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            +DL  N +          L +L  L L  N L       +  +  +  + LS N L  L
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL 396

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                    +H S +   +L        V +         L+I        +     +  
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPH---------LQILILNQNRFSSCSGDQTP 447

Query: 122 SYLSG---LDLSCNKLICHISPQI-----GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
           S       L L  N L      ++       L+ +Q L L+HN L    P  FS+L  + 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 174 SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG 233
            L L+ N+L       L     L +  ++ N L          F + S      N F+C 
Sbjct: 508 GLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-APNPDV--FVSLSVLDITHNKFICE 562

Query: 234 LPL 236
             L
Sbjct: 563 CEL 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 5e-17
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 21/226 (9%)

Query: 2   ILDLSYNRLNG-SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQ--LQLLDLSNNNL 58
            LDLS N++    +      L+ L  +  + N +      +L  L    L    L+ N+L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 59  HGLIPPCF-------DNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKN 111
           +  +   +        N  L     +G+      T      I   +   ++         
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 112 IAY---------TYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGT 161
             +         T+ G   S +  LDLS    +  ++ ++   L  ++ LNL++N +   
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
               F  L +++ L+LSYN L          L  +A   +  N+++
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 47/220 (21%), Positives = 75/220 (34%), Gaps = 46/220 (20%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           I    +  L   +P     L+    L+L+ N +          L QLQLL+L +      
Sbjct: 8   IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 62  IPP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
           I    F N      L    S    L P                   + F+          
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHP-------------------DAFQGLFH------ 98

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQ--IGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIE 173
                  L  L L    L   +       NL  +  L+LS N +    +  +F  L  ++
Sbjct: 99  -------LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 174 SLDLSYNQLNGKIP--LQLVELNTLAVFSVAHNNLSGKIP 211
           S+D S NQ+       L+ ++  TL+ FS+A N+L  ++ 
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 45/237 (18%)

Query: 1   MILDLSYNRLNGSIPDLVDGL--SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNL 58
           M     ++ +     +   GL  S + HL L+H  +          L  L++L+L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 59  HGLIPPCFDN----TTLHESYSNGSSLKP--FETSFLVKNIYIYREKKILEIFEFTTKNI 112
           + +    F        L+ SY+    L    F     V  I + +   I  I + T K  
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKF- 360

Query: 113 AYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG------------ 160
                   +  L  LDL  N L       I  +  I  + LS N L+             
Sbjct: 361 --------LEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 161 ---------TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVE-LNTLAVFSVAHNNLS 207
                     I      + H++ L L+ N+ +     Q      +L    +  N L 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 44/258 (17%), Positives = 93/258 (36%), Gaps = 26/258 (10%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L+LS N L     DL + LS L  L L +N ++     +L     ++ L  +NNN+  +
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                     ++ + +  + L+  +     +          ++  +     I       +
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSR----------VQYLDLKLNEIDTVNFAEL 164

Query: 121 VSYLSG---LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
            +       L+L  N +   +  Q+    +++TL+LS N L   +   F +   +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLS-GKIPEWTAQFATFSESSYEGNHFLCGLPL 236
             N+L   I   L     L  F +  N    G + ++ ++       + +    L G   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 237 PICRSPVTMLKASTTNKE 254
             C  P      +   ++
Sbjct: 281 EECTVPTLGHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 17/207 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           I  ++ + L  ++  L      +  L L+ N L       L    +L+LL+LS+N L+  
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                  +TL     N + ++       ++ ++      I  +     +           
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN-NISRVSCSRGQG---------- 121

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIESLDLSYN 180
                + L+ NK+        G  +R+Q L+L  N++         ++   +E L+L YN
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLS 207
            +   +    V    L    ++ N L+
Sbjct: 180 FIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 39/238 (16%), Positives = 76/238 (31%), Gaps = 40/238 (16%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L  + N ++  +           ++ LA+N +     +     +++Q LDL  N +  + 
Sbjct: 104 LHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 63  PPCFDN--TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                    TL       + +   +   +                               
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAK---------------------------- 192

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  LDLS NKL   + P+  +   +  ++L +N L+  I       +++E  DL  N
Sbjct: 193 ---LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238
             +    L+        V +VA   +  K+     +  T     + G +    LP P 
Sbjct: 248 GFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 25/207 (12%), Positives = 67/207 (32%), Gaps = 24/207 (11%)

Query: 13  SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN---- 68
           +I ++    ++     +  ++L+  +         ++ LDLS N L  +           
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 69  TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLD 128
             L+ S +        E+   ++ + +     + E+    +              +  L 
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNN-NYVQELLVGPS--------------IETLH 105

Query: 129 LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG-KIP 187
            + N  I  +S         + + L++N +             ++ LDL  N+++     
Sbjct: 106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 188 LQLVELNTLAVFSVAHNNLSGKIPEWT 214
                 +TL   ++ +N +   +    
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQV 188

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 8e-17
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 29/213 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           + +    L   +PD +   + L  L LA N L   +P  +  LN+L+ L +        +
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKIL--EIFEFTTKNIAYTYQGRV 120
           P    +T     +    +L     S  ++   I    + L   I                
Sbjct: 167 PEPLASTDASGEHQGLVNL----QSLRLEWTGI----RSLPASIANLQN----------- 207

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS-Y 179
              L  L +  + L   + P I +L +++ L+L     +   P  F     ++ L L   
Sbjct: 208 ---LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           + L   +PL +  L  L    +       ++P 
Sbjct: 264 SNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 12/217 (5%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQ--LSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           ++    R   +  DL++  +Q     L L    L  + P Q  RL+ LQ + +    L  
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME 118

Query: 61  LIPPCFDN-TTLHESYSNGSSLK--PFETSFLV--KNIYIYREKKILEIFEFTTKNIAYT 115
           L P        L       + L+  P   + L   + + I    ++ E+ E      A  
Sbjct: 119 L-PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
               +V+ L  L L    +   +   I NL  +++L + ++ L   +     +L  +E L
Sbjct: 178 EHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           DL         P        L    +   +    +P 
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 29/205 (14%), Positives = 52/205 (25%), Gaps = 47/205 (22%)

Query: 2   ILDLSYNRLNGSIPD---------LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLD 52
            L +        +P+            GL  L  L L    +   +P  +  L  L+ L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 53  LSNNNLHGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFT 108
           + N+ L  L  P   +      L           P                         
Sbjct: 213 IRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP----------------- 254

Query: 109 TKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSN 168
                          L  L L     +  +   I  LT+++ L+L     +  +PS  + 
Sbjct: 255 ---------------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 169 LKHIESLDLSYNQLNGKIPLQLVEL 193
           L     + +  +        + V  
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 40/223 (17%), Positives = 65/223 (29%), Gaps = 47/223 (21%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNL---------EGKVPVQLCRLNQLQLLD 52
            L L+ N L  ++P  +  L++L  L +                    +   L  LQ L 
Sbjct: 131 TLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 53  LSNNNLHGLIPPCFDN-TTLHESYSNGSSLK--PFETSFLVKNIYIYREKKILEIFEFTT 109
           L    +  L P    N   L       S L         L K                  
Sbjct: 190 LEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLPK------------------ 230

Query: 110 KNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNL 169
                         L  LDL     + +  P  G    ++ L L     + T+P     L
Sbjct: 231 --------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 170 KHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
             +E LDL       ++P  + +L    +  V   +L  ++ +
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 30/192 (15%), Positives = 55/192 (28%), Gaps = 34/192 (17%)

Query: 21  LSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS 80
            S   +L    +         L    Q Q    ++ N         ++         G +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 81  LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISP 140
           LK          +    +   +                        L+L    L      
Sbjct: 68  LK-----ATADLLEDATQPGRVA-----------------------LELRSVPLP-QFPD 98

Query: 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200
           Q   L+ +Q + +    L+  +P T      +E+L L+ N L   +P  +  LN L   S
Sbjct: 99  QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 201 VAHNNLSGKIPE 212
           +       ++PE
Sbjct: 157 IRACPELTELPE 168

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 28/210 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L ++ +++    P  +  L+ L  L L +N +E   P  L  L  L       N +  + 
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQ 117
           P    N     +L    +  + L P      +  + I   +   +   +  TK       
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK------- 266

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 L  L++  N+ I  IS  + NL+++ +L L++N L          L ++ +L L
Sbjct: 267 ------LKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           S N +    PL    L+ +     A+  + 
Sbjct: 319 SQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 5e-16
 Identities = 40/215 (18%), Positives = 86/215 (40%), Gaps = 27/215 (12%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+L  N     +  L   ++ L++L +  + ++   P  +  L  L  L L+ N +  +
Sbjct: 136 SLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTY 116
            P    +           +  + + P      + ++ I   K   L      ++      
Sbjct: 193 SP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ------ 244

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                  L+ L++  N+ I  I+  + +LT+++ LN+  N +  +  S  +NL  + SL 
Sbjct: 245 -------LTWLEIGTNQ-ISDINA-VKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLF 293

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
           L+ NQL  +    +  L  L    ++ N+++   P
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 5e-14
 Identities = 39/214 (18%), Positives = 84/214 (39%), Gaps = 29/214 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
             L    +   +    + L  ++ L++A   +       +  L  L+ L+L+ N +  + 
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDIS 82

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQ 117
           P    N    T L+   +  + +   +    ++ +Y+  +    +      TK       
Sbjct: 83  P--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTK------- 133

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 +  L+L  N  +  +SP + N+T +  L ++ + +     +  +NL  + SL L
Sbjct: 134 ------MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSL 184

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
           +YNQ+    PL    L +L  F+   N ++   P
Sbjct: 185 NYNQIEDISPLA--SLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 27/210 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L      +N   PD    L++    +L   ++   V      L  +  L ++   +  + 
Sbjct: 5   LATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ 60

Query: 63  PPCFDN--TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQGR 119
              +      L+ + +  + + P      + N+YI   K   +   +  T          
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN--------- 111

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
               L  L L+ +  I  ISP + NLT++ +LNL  N  + +  S  SN+  +  L ++ 
Sbjct: 112 ----LRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTE 164

Query: 180 NQLNGKIPL-QLVELNTLAVFSVAHNNLSG 208
           +++    P+  L +L +L   S+ +N +  
Sbjct: 165 SKVKDVTPIANLTDLYSL---SLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 29/212 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+L+ N++    P  +  L +L++L +  N +       L  L  L+ L L+ +N+  +
Sbjct: 70  YLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI 125

Query: 62  IPPCFDN----TTLHESY-SNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
            P    N     +L+     N S L P      +  + +    K+ ++            
Sbjct: 126 SP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTPIAN------- 175

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
               ++ L  L L+ N++   ISP + +LT +       N +    P   +N+  + SL 
Sbjct: 176 ----LTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
           +  N++    PL    L+ L    +  N +S 
Sbjct: 228 IGNNKITDLSPLA--NLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
           L  L+L+ N+ I  ISP + NL ++  L +  N +  T  S   NL ++  L L+ + ++
Sbjct: 68  LEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNIS 123

Query: 184 GKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
              PL    L  +   ++  N+    +  
Sbjct: 124 DISPLA--NLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNL 58
            L L+ N+L     +++ GL+ L+ L L+ N++    P  L  L+++   D +N  +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 17/223 (7%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L++    L       +  +  + HL L  +     + +    L+ ++ L+L + NL   
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 62  IPPCFD----NTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
                     ++ + +    GS L     + L+K +    E   +E  + T   +     
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 118 GRV----------VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167
                           +  L +    L   +S     L +++ + + ++ +     S   
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 168 NLKHIESLDLSYNQLNGKIPLQLVELNTLA---VFSVAHNNLS 207
           +LK +E LDLS N +  +                  ++ N+L 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 31/235 (13%), Positives = 80/235 (34%), Gaps = 15/235 (6%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            L +        I  +   GL+ L+ L +   +L       L  +  +  L L  +    
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 61  LIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKK----ILEIFEFTTKNIAYT 115
           L+    D  +++       ++L  F+ S L  +      KK       + + +   +   
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 116 YQGRV-VSYLSGLDLSCNKLICHISPQIG--------NLTRIQTLNLSHNDLIGTIPSTF 166
            +  + +S +   D + N L      +              I+ L++    L   + + +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 167 SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS 221
           S L+ ++ + +  +++          L +L    ++ N +  +  + +A    + 
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 30/209 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDLS+N++       +   + L  LIL  + +          L  L+ LDLS+N+L  L
Sbjct: 30  SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89

Query: 62  IPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
               F   + L      G+  +    + L  N+                           
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL--------------------------- 122

Query: 121 VSYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
            + L  L +   +    I       LT +  L +    L      +  +++ I  L L  
Sbjct: 123 -TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
           ++    + +    L+++    +   NL+ 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 21/188 (11%)

Query: 2   ILDLSYNRLNGSI---PDLVDGLSQLSHLILAHNNLE--GKVPVQLCRLNQLQLLDLSNN 56
            LDLS N +                L  L+L+ N+L    K    L  L  L  LD+S N
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

Query: 57  NLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIY-REKKILEIFEFTTKNIAYT 115
             H +   C     +     + + ++  +T        +      +     F  +     
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPR----- 452

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
                   L  L +S NKL     P       +  + +S N L       F  L  ++ +
Sbjct: 453 --------LQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 176 DLSYNQLN 183
            L  N  +
Sbjct: 503 WLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 47/220 (21%)

Query: 2   ILDLSYNRLNGSIPDLVDGLS--------QLSHLILAHNNLEGKVPVQLCRLNQLQLLDL 53
             D + N L    P   D +S         +  L +    L   +      L +++ + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 54  SNNNLHGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT 109
            N+ +  +      +      L  S +         ++                      
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK-------------------- 357

Query: 110 KNIAYTYQGRVVSYLSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167
                         L  L LS N L  +      +  L  + +L++S N     +P +  
Sbjct: 358 ---------GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQ 407

Query: 168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
             + +  L+LS   +   +   +    TL V  V++NNL 
Sbjct: 408 WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 19/186 (10%)

Query: 29  LAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN----TTLHESYSNGSSLKPF 84
               +    +P  L     ++ LDLS N +  +             L    S  ++++  
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 85  ETSFLVKNIYIY-REKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC-HISPQI 142
               L    ++   +  +  +       +         S L  L+L  N      ++   
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPL---------SSLKYLNLMGNPYQTLGVTSLF 119

Query: 143 GNLTRIQTLNLSHNDLIGTIP-STFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV 201
            NLT +QTL + + +    I    F+ L  +  L++    L       L  +  +   ++
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 202 AHNNLS 207
             +  +
Sbjct: 180 HLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
           + L  L L  ++ I  I      +L  ++ L+LS N L     S F  L  ++ L+L  N
Sbjct: 50  ANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 181 QLNG-KIPLQLVELNTLAVFSVAHNNLSGKIPEWT 214
                 +      L  L    + +     +I    
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.5 bits (186), Expect = 6e-16
 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 18/205 (8%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L  N L+     +     +L+ L +++NNLE            LQ L LS+N L  + 
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                +  L  +  + + L        V+ +       I  +                  
Sbjct: 182 LSLIPS--LFHANVSYNLLSTLAIPIAVEELDASH-NSINVVRGPVNVE----------- 227

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
            L+ L L  N L    +  + N   +  ++LS+N+L   +   F  ++ +E L +S N+L
Sbjct: 228 -LTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLS 207
              + L    + TL V  ++HN+L 
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +S N L     D     + L +L L+ N L     V L  +  L   ++S N L   +
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TL 201

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                   L  S+++ + ++      L   + +     + +                   
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVEL-TILKLQH-NNLTDTAWLLN-----------YP 248

Query: 123 YLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
            L  +DLS N+ +  I       + R++ L +S+N  +  +      +  ++ LDLS+N 
Sbjct: 249 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH 306

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           L   +     + + L    + HN++ 
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 19/206 (9%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L + +N +    P +   +  L+ L+L  N+L            +L  L +SNNNL  + 
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 63  PPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
              F  TT L     + + L   + S +    +      +L                   
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA----------- 206

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             +  LD S N  I  +   +     +  L L HN+L  T  +   N   +  +DLSYN+
Sbjct: 207 --VEELDASHNS-INVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNE 259

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           L   +    V++  L    +++N L 
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 57/207 (27%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           I+    + +      L+D   Q+  L L    +E          + +Q L +  N +  L
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
            P  F N                                                     
Sbjct: 109 PPHVFQNV---------------------------------------------------- 116

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
             L+ L L  N  +  +   I  N  ++ TL++S+N+L      TF     +++L LS N
Sbjct: 117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +L   + L L  + +L   +V++N LS
Sbjct: 176 RLT-HVDLSL--IPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 40/182 (21%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LD S+N +N  +        +L+ L L HNNL       L     L  +DLS N L  ++
Sbjct: 210 LDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 264

Query: 63  PPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
              F     L   Y + + L                                     + +
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYG------------------------------QPI 294

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  LDLS N  + H+        R++ L L HN  I T+    S    +++L LS+N 
Sbjct: 295 PTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350

Query: 182 LN 183
            +
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 48/209 (22%), Positives = 75/209 (35%), Gaps = 47/209 (22%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L+L+  ++             +  L +  N +    P     +  L +L L  N+L  L 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
              F N    TTL  S +N   ++                    + F+ TT         
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIED-------------------DTFQATTS-------- 166

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
                L  L LS N+L  H+      +  +   N+S+N L     ST +    +E LD S
Sbjct: 167 -----LQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDAS 213

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +N +N       VEL  L    + HNNL+
Sbjct: 214 HNSINVVRGPVNVELTIL---KLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 51/209 (24%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
            ++SYN L+      +     +  L  +HN++   V   +    +L +L L +NNL    
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLTDT- 241

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
                N      +  SY+    +                       F    +        
Sbjct: 242 -AWLLNYPGLVEVDLSYNELEKIMY-------------------HPFVKMQR-------- 273

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
                L  L +S N+L+  ++     +  ++ L+LSHN  +  +         +E+L L 
Sbjct: 274 -----LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLD 326

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +N +     L+L   +TL   +++HN+  
Sbjct: 327 HNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 7/85 (8%), Positives = 27/85 (31%)

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
               + +       +   +   L   + +   ++ +     +   + + +E L+L+  Q+
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLS 207
                      +T+    +  N + 
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
           +LDLS+N L   +        +L +L L HN++     ++L   + L+ L LS+N+  
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 18/206 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L L  N L+     +     +L+ L +++NNLE            LQ L LS+N L  +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                 +  L  +  + + L        V+ +       I  +                 
Sbjct: 187 DLSLIPS--LFHANVSYNLLSTLAIPIAVEELDASH-NSINVVRGPVNVE---------- 233

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L+ L L  N L    +  + N   +  ++LS+N+L   +   F  ++ +E L +S N+
Sbjct: 234 --LTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           L   + L    + TL V  ++HN+L 
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 21/206 (10%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +S N L     D     + L +L L+ N L     V L  +  L   ++S N L  L 
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTL- 207

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                   + E  ++ +S+        V+          L I +    N+  T       
Sbjct: 208 ---AIPIAVEELDASHNSINVVRGPVNVE----------LTILKLQHNNLTDTAWLLNYP 254

Query: 123 YLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
            L  +DLS N+ +  I       + R++ L +S+N  +  +      +  ++ LDLS+N 
Sbjct: 255 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 312

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           L   +     + + L    + HN++ 
Sbjct: 313 LL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 4e-10
 Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 43/214 (20%)

Query: 1   MILDLSYNRLNGSIPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNL 58
           +  D+  +     +    +   L+    +   ++ +       L    Q++LL+L++  +
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 59  HGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
             +    F        L+  ++    L P                    +F+        
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIRYLPP-------------------HVFQNVPL---- 124

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                    L+ L L  N  +  +   I  N  ++ TL++S+N+L      TF     ++
Sbjct: 125 ---------LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 174 SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +L LS N+L   + L L  + +L   +V++N LS
Sbjct: 175 NLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 46/211 (21%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           I+    + +      L+D   Q+  L L    +E          + +Q L +  N +  L
Sbjct: 55  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P  F N    T L    ++ SSL                      IF  T K       
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPR-------------------GIFHNTPK------- 148

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L+ L +S N  +  I        T +Q L LS N  +  +    S +  +   +
Sbjct: 149 ------LTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHAN 198

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +SYN L+      L     +     +HN+++
Sbjct: 199 VSYNLLS-----TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 44/182 (24%), Positives = 66/182 (36%), Gaps = 40/182 (21%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LD S+N +N  +   V    +L+ L L HNNL       L     L  +DLS N L  ++
Sbjct: 216 LDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 270

Query: 63  PPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
              F     L   Y + + L                                     + +
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYG------------------------------QPI 300

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  LDLS N L+ H+        R++ L L HN  I T+    S    +++L LS+N 
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356

Query: 182 LN 183
            +
Sbjct: 357 WD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 7/188 (3%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +S NRL  ++      +  L  L L+HN+L   V     + ++L+ L L +N++  L 
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNI---YIYREKKILEIFEFTTKNIAYTYQGR 119
                   L     + +         L +N+    +    +  +I       +      +
Sbjct: 341 LSTHHT--LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
                    ++   ++  +    G  +   T+N   +            L+  E L+   
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV 458

Query: 180 NQLNGKIP 187
           N+L  ++ 
Sbjct: 459 NELRAEVQ 466

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 41/214 (19%)

Query: 2   ILDLSYNRLN--GSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
            LDLS N L+  G       G + L +L L+ N +   +      L QL+ LD  ++NL 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 60  GLIPPC-FDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
            +     F +      L  S+++                          IF   +     
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFN-------------------GIFNGLSS---- 446

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                    L  L ++ N    +  P I   L  +  L+LS   L    P+ F++L  ++
Sbjct: 447 ---------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 174 SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            L+++ NQL          L +L    +  N   
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 44/220 (20%), Positives = 72/220 (32%), Gaps = 42/220 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDLS+N L            +L  L L+   ++         L+ L  L L+ N +  L
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F        L    +N +SL+ F    L                            
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-------------------------- 125

Query: 118 GRVVSYLSGLDLSCNKL-ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH----I 172
                 L  L+++ N +    +     NLT ++ L+LS N +     +    L       
Sbjct: 126 ------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 173 ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            SLDLS N +N  I     +   L   ++ +N  S  + +
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 15/203 (7%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +LDLS   +          LS LS LIL  N ++         L+ LQ L     NL  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 62  IPPCFDN----TTLHESYSNGSSLKP---FETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
                 +      L+ +++   S K    F     ++++ +   K    I      ++  
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK----IQSIYCTDLRV 171

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPST-FSNLKHIE 173
            +Q  ++     LDLS N  +  I P      R+  L L +N     +  T    L  +E
Sbjct: 172 LHQMPLL--NLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 174 SLDLSYNQLNGKIPLQLVELNTL 196
              L   +   +  L+  + + L
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSAL 251

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 33/208 (15%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE--GKVPVQLCRLNQLQLLDLSNNNLHG 60
           L  + N+   +  ++   L  L  L L+ N L   G           L+ LDLS N +  
Sbjct: 330 LTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
           +         L       S+L                            K ++       
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNL----------------------------KQMSEFSVFLS 419

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLSY 179
           +  L  LD+S        +     L+ ++ L ++ N          F+ L+++  LDLS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            QL    P     L++L V ++A N L 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 40/198 (20%)

Query: 4   DLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP 63
                     IPD  +      +L L+ N L            +LQ+LDLS   +  +  
Sbjct: 13  QCMELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 64  PCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
             + +    +TL  + +   SL                       F   +          
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLAL-------------------GAFSGLSS--------- 101

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL-IGTIPSTFSNLKHIESLDLS 178
               L  L      L    +  IG+L  ++ LN++HN +    +P  FSNL ++E LDLS
Sbjct: 102 ----LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 179 YNQLNGKIPLQLVELNTL 196
            N++       L  L+ +
Sbjct: 158 SNKIQSIYCTDLRVLHQM 175

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 27/231 (11%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILA------HNNLEGKVPVQLCRLNQLQLLDLSN 55
           L L  N  + ++      GL+ L    L         NLE      L  L  L + +   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 56  NNLH-------GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR---------EK 99
             L         L     + ++          +K F  +F  +++ +           + 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 100 KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC--HISPQIGNLTRIQTLNLSHND 157
           K L+   FT+      +    +  L  LDLS N L      S      T ++ L+LS N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPL-QLVELNTLAVFSVAHNNLS 207
           +I T+ S F  L+ +E LD  ++ L         + L  L    ++H +  
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLH 59
           + LD+S+     +   + +GLS L  L +A N+ +          L  L  LDLS   L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 60  GLIPPCFDNTT 70
            L P  F++ +
Sbjct: 484 QLSPTAFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 20/86 (23%), Positives = 34/86 (39%)

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
                LDLS N L    S    +   +Q L+LS  ++       + +L H+ +L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           +          L++L        NL+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 21/171 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPV-QLCRLNQLQLLDLSNNNLHGL 61
           LDLS+N +  ++     GL QL HL   H+NL+          L  L  LD+S+ +    
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 62  IPPCFDN----TTLHESYSN-GSSLKP--FETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
               F+       L  + ++   +  P  F     +  + + +  ++ ++      ++  
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSL-- 493

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPS 164
                  S L  L+++ N+L   +   I   LT +Q + L  N    + P 
Sbjct: 494 -------SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 6e-15
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 17/207 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           I  ++ + L  ++  L      +  L L+ N L       L    +L+LL+LS+N L+  
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                  +TL     N + ++       ++ ++      I  +     +           
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN-NISRVSCSRGQG---------- 121

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIESLDLSYN 180
                + L+ NK+        G  +R+Q L+L  N++         ++   +E L+L YN
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLS 207
            +   +    V    L    ++ N L+
Sbjct: 180 FIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 20/243 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L+LS N L     DL + LS L  L L +N ++     +L     ++ L  +NNN+  +
Sbjct: 62  LLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                     ++ + +  + L+  +     +  Y+      L++ E  T N A       
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD-----LKLNEIDTVNFAELAAS-- 167

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L+L  N +   +  Q+    +++TL+LS N  +  +   F +   +  + L  N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLS-GKIPEWTAQFATFSESSYEGNHFLCGLPLPIC 239
           +L   I   L     L  F +  N    G + ++ ++       + +    L G     C
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 240 RSP 242
             P
Sbjct: 284 TVP 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 40/238 (16%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L  + N ++  +           ++ LA+N +     +     +++Q LDL  N +  + 
Sbjct: 104 LHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 63  PPCFDN--TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                    TL       + +   +   +                               
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAK---------------------------- 192

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  LDLS NKL   + P+  +   +  ++L +N L+  I       +++E  DL  N
Sbjct: 193 ---LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI 238
             +              V +VA   +   +     +  T     + G +    LP P 
Sbjct: 248 GFHCGTLRDFF-SKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 3/194 (1%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDLS N+L   +       + ++ + L +N L   +   L     L+  DL  N  H   
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
              F +           ++K        +              E      A         
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
             + L    ++    +  +  N  R + ++         I       +   +L+     L
Sbjct: 314 EHALLSGQGSE-TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 183 NGKIPLQLVELNTL 196
           + ++         L
Sbjct: 373 DEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 26/200 (13%), Positives = 68/200 (34%), Gaps = 23/200 (11%)

Query: 13  SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN---- 68
           +I ++    ++     +  ++L+  +         ++ LDLS N L  +           
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 69  TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLD 128
             L+ S +        E+   ++ + +     + E+    +              +  L 
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNN-NYVQELLVGPS--------------IETLH 105

Query: 129 LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL 188
            + N  I  +S         + + L++N +             ++ LDL  N+++     
Sbjct: 106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 189 QLVE-LNTLAVFSVAHNNLS 207
           +L    +TL   ++ +N + 
Sbjct: 163 ELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 22/209 (10%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDLS N L+      +   ++L  L L+ N L     + L  L+ L+ LDL+NN +   
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE- 94

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQGRV 120
           +       TLH + +N S +         KNIY+   K  +L   +              
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGK-KNIYLANNKITMLRDLDEGC----------- 142

Query: 121 VSYLSGLDLSCNKLICHISPQ--IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
            S +  LDL  N+ I  ++      +   ++ LNL +N +   +         +++LDLS
Sbjct: 143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLS 199

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            N+L   +  +      +   S+ +N L 
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV 201
             N  R +   ++ + L   + S   +  +++ LDLS N L+      L     L + ++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 202 AHNNLSG 208
           + N L  
Sbjct: 66  SSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 32/232 (13%)

Query: 2   ILDLSYNRLNG-SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            LDL  N ++  +  +L      L HL L +N +   V  Q+    +L+ LDLS+N L  
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF 205

Query: 61  LIPPCFDN--------------TTLHESYSNGSSLK-------PFETSFLVKNIYIYREK 99
            + P F +                + ++     +L+        F    L    +  + +
Sbjct: 206 -MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQ 262

Query: 100 KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL- 158
           ++  + + T K +         +  +             +P    L  ++    +     
Sbjct: 263 RVQTVAKQTVKKLTG-QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 159 ---IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
                 +     N      +D    Q    I    +              L 
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 18/213 (8%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LD+S N++   +  +   L  L  L +  N+L          LN L+ L L   NL  +
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167

Query: 62  IPPCFDN----TTLHESYSNGSSLKP--FETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
                 +      L   + N ++++   F+  + +K + I     +  +       +   
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-- 225

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
                   L+ L ++    +  +    + +L  ++ LNLS+N +     S    L  ++ 
Sbjct: 226 --------LTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           + L   QL    P     LN L V +V+ N L+
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 16/212 (7%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L  NRL      +  GLS L+ L ++ N +   +      L  L+ L++ +N+L  +
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F        L     N +S+     S L            L +      NI     
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG----------LIVLRLRHLNINAIRD 193

Query: 118 G--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
              + +  L  L++S    +  ++P       + +L+++H +L         +L ++  L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +LSYN ++      L EL  L    +    L+
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 8e-13
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 38/187 (20%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L L +  +N         L +L  L ++H      +         L  L +++ NL  +
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
                 +      L+ SY+  S+++                     +     +       
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEG-------------------SMLHELLR------- 273

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L  + L   + +  + P     L  ++ LN+S N L     S F ++ ++E+L 
Sbjct: 274 ------LQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 177 LSYNQLN 183
           L  N L 
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 31/213 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L+L+ N ++   P   + L  L  L L  N L+         L+ L  LD+S N +  L+
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
              F +           +L   ++  +  N        ++ I                ++
Sbjct: 121 DYMFQDLY---------NL---KSLEVGDN-------DLVYISHRAFSG---------LN 152

Query: 123 YLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
            L  L L    L   I  +   +L  +  L L H ++      +F  L  ++ L++S+  
Sbjct: 153 SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWT 214
               +    +    L   S+ H NL+  +P   
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 41/211 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            +     R   ++P+ +   ++   L L  N ++     +      L+ L+L+ N +  +
Sbjct: 15  AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P  F+N     TL    +    +                      +F   +        
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPL-------------------GVFTGLSN------- 105

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L+ LD+S NK I  +   +  +L  +++L +  NDL+      FS L  +E L 
Sbjct: 106 ------LTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           L    L       L  L+ L V  + H N++
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 31/183 (16%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-LNQLQLLDLSNNNLHG 60
            LDLS+N +  ++     GL QL HL   H+NL+      +   L  L  LD+S+ +   
Sbjct: 82  YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                F+  +         SL+          + +                         
Sbjct: 141 AFNGIFNGLS---------SLE---------VLKMAGNSFQENFLPDIFTE--------- 173

Query: 121 VSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
           +  L+ LDLS  +L   +SP    +L+ +Q LN+SHN+        +  L  ++ LD S 
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 180 NQL 182
           N +
Sbjct: 233 NHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 57/212 (26%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           +  +   L  S+P  +   S  + L L  N L+        +L QL  L LS+N L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                +                                                     +
Sbjct: 69  CCSQSDFGT--------------------------------------------------T 78

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP--STFSNLKHIESLDLSYN 180
            L  LDLS N +I  +S     L +++ L+  H++ +  +   S F +L+++  LD+S+ 
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT 136

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
                       L++L V  +A N+       
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 25/216 (11%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L+L  N++     +    L  L  L L+ N++          L  L  L+L +N L  +
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 62  IPPCFDN----TTLHESYSNGSSLKP--FETSFLVKNIYIYREKKILEI----FEFTTKN 111
               F        L    +   S+    F     ++ + +   K++  I    FE  +  
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN- 186

Query: 112 IAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
                       L  L+L+   L   I P +  L ++  L+LS N L    P +F  L H
Sbjct: 187 ------------LRYLNLAMCNLR-EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 172 IESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           ++ L +  +Q+          L +L   ++AHNNL+
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 8e-14
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L LS N +        +GL+ L+ L L  N L          L++L+ L L NN +  + 
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152

Query: 63  PPCFDN----TTLHESYSNG-SSLKP--FETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
              F+       L        S +    FE    ++ + +     + EI   T       
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPNLTP------ 205

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
                +  L  LDLS N  +  I P     L  +Q L +  + +     + F NL+ +  
Sbjct: 206 -----LIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNL 206
           ++L++N L          L+ L    + HN  
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 17/188 (9%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+L  NRL          LS+L  L L +N +E        R+  L+ LDL        
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 62  IPP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
           I    F+       L+ +  N   +        +  + +     +  I   + +      
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQG----- 229

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
               + +L  L +  ++ I  I      NL  +  +NL+HN+L       F+ L H+E +
Sbjct: 230 ----LMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 176 DLSYNQLN 183
            L +N  N
Sbjct: 285 HLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 44/211 (20%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           +      L   +PD +   +    L L  N ++         L  L++L LS N++  + 
Sbjct: 48  VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
              F+      TL    +  +++                       F + +K        
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPN-------------------GAFVYLSK-------- 137

Query: 119 RVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLD 176
                L  L L  N  I  I       +  ++ L+L     +  I    F  L ++  L+
Sbjct: 138 -----LKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           L+   L  +IP  L  L  L    ++ N+LS
Sbjct: 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 124 LSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           L  L LS N  I  I       L  + TL L  N L       F  L  ++ L L  N +
Sbjct: 90  LEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 183 NGKIPLQL-VELNTLAVFSVAHNNLSGKIPE 212
              IP      + +L    +        I E
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.8 bits (171), Expect = 5e-14
 Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 25/216 (11%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+L  N +     D    L  L  L L  N++          L  L  L+L +N L  +
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVK--NIYIYREKKILEI----FEFTTKN 111
               F+       L    +   S+  +  + +     + +   KK+  I    FE     
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN- 197

Query: 112 IAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH 171
                       L  L+L    +   + P +  L  ++ L +S N      P +F  L  
Sbjct: 198 ------------LKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 172 IESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           ++ L +  +Q++         L +L   ++AHNNLS
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 25/214 (11%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           L L  N +   I     +GL+ L+ L L  N L          L++L+ L L NN +  +
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162

Query: 62  IPPCFDN----TTLHESYSNG-SSLKP--FETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
               F+       L          +    FE  F +K + +     I ++          
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPNL------- 214

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                 +  L  L++S N     I P     L+ ++ L + ++ +     + F  L  + 
Sbjct: 215 ----TPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 174 SLDLSYNQLNGKIPLQLVE-LNTLAVFSVAHNNL 206
            L+L++N L+  +P  L   L  L    + HN  
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN-LHG 60
            L+L  N L        + LS+L  L L +N +E        R+  L  LDL     L  
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 61  LIPPCFDN----TTLHESYSNGSSLKPF------ETSFLVKNIYIYREKKILEIFEFTTK 110
           +    F+       L+    N   +         E   +  N          EI   +  
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN-------HFPEIRPGSFH 239

Query: 111 NIAYTYQGRVVSYLSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNL 169
                     +S L  L +  ++ +  I       L  +  LNL+HN+L       F+ L
Sbjct: 240 G---------LSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 170 KHIESLDLSYNQLN 183
           +++  L L +N  N
Sbjct: 290 RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 44/211 (20%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           +  +   L+  +P  +   S   +L L  NN++         L+ L++L L  N++  + 
Sbjct: 59  VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
              F+      TL    +  + +                       FE+ +K        
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPS-------------------GAFEYLSK-------- 148

Query: 119 RVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLD 176
                L  L L  N  I  I       +  +  L+L     +  I    F  L +++ L+
Sbjct: 149 -----LRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           L    +   +P  L  L  L    ++ N+  
Sbjct: 203 LGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
            +L  L L  N  I  I       L  + TL L  N L       F  L  +  L L  N
Sbjct: 99  HHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            +          + +L    +        I E
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 44/193 (22%)

Query: 22  SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN----TTLHESYSN 77
           +Q S ++     L  +VP  +   +  + L+L  NN+  +    F +      L    ++
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 78  GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICH 137
              ++                      F                  L+ L+L  N L   
Sbjct: 111 IRQIEV-------------------GAFNGLAS-------------LNTLELFDNWLT-V 137

Query: 138 ISPQI-GNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLS-YNQLNGKIPLQLVELN 194
           I       L++++ L L +N  I +IPS  F+ +  +  LDL    +L          L 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 195 TLAVFSVAHNNLS 207
            L   ++   N+ 
Sbjct: 197 NLKYLNLGMCNIK 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L  + N+++   P  +  L+ L  L L  N L+      L  L  L  LDL+NN +  L
Sbjct: 203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 258

Query: 62  IPPCFDN--TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQG 118
            P       T L    +  S++ P      + N+ +   + + +                
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN-------- 310

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
                L+ L L  N  I  ISP + +LT++Q L   +N +  +  S+ +NL +I  L   
Sbjct: 311 -----LTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAG 361

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           +NQ++   PL    L  +    +     +     
Sbjct: 362 HNQISDLTPLA--NLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 29/214 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            ++ S N+L    P  +  L++L  +++ +N +    P  L  L  L  L L NN +  +
Sbjct: 72  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 127

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P    N      L  S +  S +       L     +    ++ ++             
Sbjct: 128 DP--LKNLTNLNRLELSSNTISDISALSG--LTSLQQLSFGNQVTDLKPLAN-------- 175

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
              ++ L  LD+S NK +  IS  +  LT +++L  ++N +    P     L +++ L L
Sbjct: 176 ---LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
           + NQL     L    L  L    +A+N +S   P
Sbjct: 229 NGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 31/211 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L      +     D V+ L+ L+ +  ++N L    P  L  L +L  + ++NN +  + 
Sbjct: 51  LQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQ 117
           P    N    T L    +  + + P +    +  + +       +      T        
Sbjct: 107 P--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS------- 157

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 L  L       +  + P + NLT ++ L++S N +  +  S  + L ++ESL  
Sbjct: 158 ------LQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKV--SDISVLAKLTNLESLIA 206

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
           + NQ++   PL    L  L   S+  N L  
Sbjct: 207 TNNQISDITPLG--ILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 31/234 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LDL+ N+++   P  + GL++L+ L L  N +    P  L  L  L  L+L+ N L  + 
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQ 117
           P    N    T L   ++N S + P  +   ++ ++ Y  K   +      T        
Sbjct: 304 P--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN------- 354

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                 ++ L    N+ I  ++P + NLTRI  L L+         +  +N+      + 
Sbjct: 355 ------INWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSI---PNT 403

Query: 178 SYNQLNGKI-PLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHF 230
             N     I P  + +  +     +  N  S    E +  F+           F
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 29/215 (13%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           M   L    +  ++      L Q++ L      +  K    +  LN L  ++ SNN L  
Sbjct: 27  MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD 82

Query: 61  LIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
           + P    N      +  + +  + + P      +  + ++   +I +I            
Sbjct: 83  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF-NNQITDIDPLKN------- 132

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
               ++ L+ L+LS N  I  IS  +  LT +Q L+  +     T     +NL  +E LD
Sbjct: 133 ----LTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQV---TDLKPLANLTTLERLD 183

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
           +S N+++    L   +L  L      +N +S   P
Sbjct: 184 ISSNKVSDISVLA--KLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 24  LSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPC-FDN-TTLHESYSNGSSL 81
           L    +  +    ++      L +     L   N+   +     D  TTL        S+
Sbjct: 3   LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

Query: 82  KPFETSFLVKNIYIYREK--KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHIS 139
              E    +  I     +   I  +   T               L  + ++ N++   I+
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPLKNLTK--------------LVDILMNNNQIA-DIT 106

Query: 140 PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL-QLVELNTLAV 198
           P + NLT +  L L +N +  T      NL ++  L+LS N ++    L  L  L  L+ 
Sbjct: 107 P-LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 199 FSVAHNNLSGKIP 211
                N ++   P
Sbjct: 164 ----GNQVTDLKP 172

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 8e-13
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 36/205 (17%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +  N L  S+P L     +L  L ++ N L   +PV    L +L +      +L  L 
Sbjct: 66  LVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                   L    +  +SL P     L          + L + +    ++         S
Sbjct: 121 SGL---CKLWIFGNQLTSL-PVLPPGL----------QELSVSDNQLASLPAL-----PS 161

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
            L  L    N+L   +      L   Q L++S N L  ++P+  S L     L    N+L
Sbjct: 162 ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSEL---YKLWAYNNRL 213

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLS 207
              +P     L  L    V+ N L+
Sbjct: 214 T-SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 4e-12
 Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 57/237 (24%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLN--------------QL 48
           L++S N+L  S+P L  GL +LS       +L   +P  LC+L                L
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGL 143

Query: 49  QLLDLSNNNLHGLIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEF 107
           Q L +S+N L  L P        L    +  +SL P   S L + + +  + ++  +   
Sbjct: 144 QELSVSDNQLASL-PALPSELCKLWAYNNQLTSL-PMLPSGL-QELSV-SDNQLASLPT- 198

Query: 108 TTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS 167
                       + S L  L    N+L   +      L     L +S N L  ++P   S
Sbjct: 199 ------------LPSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRL-TSLPVLPS 241

Query: 168 NLKHI-----------------ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            LK +                  SL +  NQL  ++P  L+ L++    ++  N LS
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 58/212 (27%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +L++  + L  ++PD +   + ++ L++  NNL   +P       +L+ L++S N L  L
Sbjct: 44  VLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLP---ALPPELRTLEVSGNQLTSL 96

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
            P        L    +  + L    +                                  
Sbjct: 97  -PVLPPGLLELSIFSNPLTHLPALPSG--------------------------------- 122

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L +  N+L   +      L   Q L++S N L  ++P+  S L     L    N
Sbjct: 123 ---LCKLWIFGNQL-TSLPVLPPGL---QELSVSDNQL-ASLPALPSELC---KLWAYNN 171

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           QL   +P+    L  L   SV+ N L+  +P 
Sbjct: 172 QLT-SLPMLPSGLQEL---SVSDNQLA-SLPT 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
            + L++  + L   +   +     I TL +  N+L  ++P+    L+   +L++S NQL 
Sbjct: 42  NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT 94

Query: 184 GKIPLQLVELNTLAVFSVAHNNLSGKIPEWT 214
             +P+    L  L++FS    +L        
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 52/179 (29%)

Query: 40  VQLCRLNQLQLLDLSNNNLHGLIPPCFDN--TTLHESYSNGSSLKPFETSFLVKNIYIYR 97
           ++ C  N   +L++  + L  L P C     TTL    +N +SL P     L        
Sbjct: 34  MRACLNNGNAVLNVGESGLTTL-PDCLPAHITTLVIPDNNLTSL-PALPPELRT------ 85

Query: 98  EKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND 157
                                        L++S N+L   +      L  +   +     
Sbjct: 86  -----------------------------LEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ 216
           L    P+  S L     L +  NQL   +P+    L  L   SV+ N L+  +P   ++
Sbjct: 116 L----PALPSGLC---KLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +S NRL  S+P L    S L  L +  N L  ++P  L  L+    ++L  N L    
Sbjct: 246 LMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 63  PPCFDNTTLHESYSN 77
                  T    YS 
Sbjct: 301 LQALREITSAPGYSG 315

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 9/186 (4%)

Query: 2   ILDLSYNRLNGSIPD--LVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNL 58
            L+L  N    ++ +  L   L++L  L + + +   K+  +    L  L+ L++  ++L
Sbjct: 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 59  HGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
               P    +    + L         L             +      L+ F F+  +   
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES 174
           T           + ++   L   +   +  ++ +  L  S N L       F  L  ++ 
Sbjct: 247 TNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 175 LDLSYN 180
           + L  N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 45/248 (18%), Positives = 75/248 (30%), Gaps = 44/248 (17%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            LDLS NR+       +     L  L+L  N +          L  L+ LDLS N L  L
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F      T L+   +   +L                      +F   TK       
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGE------------------TSLFSHLTK------- 150

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L  L +        I  +    LT ++ L +  +DL    P +  +++++  L 
Sbjct: 151 ------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 177 LSYNQL--------NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGN 228
           L   Q         +    ++ +EL    + +   + LS        +  TF        
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 229 HFLCGLPL 236
                + L
Sbjct: 265 SLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
           + ++   L   +  L++ +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 27/214 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L  N+++   P     L +L  L L+ N L+ ++P ++     LQ L +  N +  + 
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVR 137

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFL----VKNIYIYREKKILEIFEFTTKNIAY 114
              F+       +    +   S      +F     +  I I     I  I          
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTI---------- 186

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE 173
                +   L+ L L  NK I  +       L  +  L LS N +      + +N  H+ 
Sbjct: 187 --PQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 174 SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            L L+ N+L  K+P  L +   + V  + +NN+S
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 45/214 (21%), Positives = 79/214 (36%), Gaps = 15/214 (7%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +LDL  N++          L  L  LIL +N +    P     L +L+ L LS N L  L
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNI-AYTYQGR 119
                     L    +  + ++    + L + I +      L      +  I    +QG 
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-----LGTNPLKSSGIENGAFQG- 169

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLS 178
            +  LS + ++   +   I    G    +  L+L  N  I  + + +   L ++  L LS
Sbjct: 170 -MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLS 224

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           +N ++      L     L    + +N L  K+P 
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 44/190 (23%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
             + ++   +  +IP  +     L+ L L  N +       L  LN L  L LS N++  
Sbjct: 174 SYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

Query: 61  LIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           +      N   L E + N + L                                      
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGL------------------------------A 260

Query: 120 VVSYLSGLDLSCNKLICHISPQ-------IGNLTRIQTLNLSHNDLIGTI--PSTFSNLK 170
              Y+  + L  N  I  I                   ++L  N +      PSTF  + 
Sbjct: 261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 171 HIESLDLSYN 180
              ++ L   
Sbjct: 320 VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 42/214 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           ++  S   L   +P  +      + L L +N +          L  L  L L NN +  +
Sbjct: 35  VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
            P  F              L+     +L KN       ++ E+ E   K           
Sbjct: 92  SPGAFAPLV---------KLERL---YLSKN-------QLKELPEKMPKT---------- 122

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDL-IGTIPS-TFSNLKHIESLDLS 178
             L  L +  N+ I  +   +   L ++  + L  N L    I +  F  +K +  + ++
Sbjct: 123 --LQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
              +   IP  L    +L    +  N ++ K+  
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDA 209

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 5e-12
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 35/219 (15%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L L+   L+ S+PD +    Q++ L +  N L   +P        L+ LD  +N L  L 
Sbjct: 64  LQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLSTL- 115

Query: 63  PPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           P    +   L    +  + L P   + L + I      ++  + E  T            
Sbjct: 116 PELPASLKHLDVDNNQLTML-PELPALL-EYINA-DNNQLTMLPELPTS----------- 161

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES----LDL 177
             L  L +  N+L   +     +L     L++S N L  ++P+      H E        
Sbjct: 162 --LEVLSVRNNQL-TFLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ 216
             N++   IP  ++ L+      +  N LS +I E  +Q
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 49/214 (22%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPV-QLCRLNQLQLLDLSNNNLH 59
           +  +  YN ++G+  D      +     L   N    V + + C +NQ   L L+  NL 
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
            L P                 +   E   + +N        ++ + E             
Sbjct: 73  SL-PDNL-----------PPQITVLE---ITQN-------ALISLPELPAS--------- 101

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
               L  LD   N+L   +     +L     L++ +N L   +P   + L++   ++   
Sbjct: 102 ----LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEY---INADN 149

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           NQL   +P     L  L   SV +N L+  +PE 
Sbjct: 150 NQLT-MLPELPTSLEVL---SVRNNQLT-FLPEL 178

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 39/226 (17%), Positives = 67/226 (29%), Gaps = 52/226 (23%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LD   NRL+ ++P+L    + L HL + +N L   +P        L+ ++  NN L  L 
Sbjct: 105 LDACDNRLS-TLPEL---PASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLTML- 155

Query: 63  PPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           P    +   L    +  + L     S                                  
Sbjct: 156 PELPTSLEVLSVRNNQLTFLPELPES---------------------------------- 181

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQT----LNLSHNDLIGTIPSTFSNLKHIESLDL 177
             L  LD+S N L   +          +          N  I  IP    +L    ++ L
Sbjct: 182 --LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIIL 237

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSES 223
             N L+ +I   L +      +       S    +        +++
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 27/162 (16%)

Query: 51  LDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTK 110
           + L  NN   L    F NT         S+   +E   L       R + +  + E    
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE---NRNEAVSLLKECLIN 59

Query: 111 NIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLK 170
                         S L L+   L   +   +    +I  L ++ N LI ++P   ++L+
Sbjct: 60  Q------------FSELQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPELPASLE 103

Query: 171 HIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           +   LD   N+L+  +P     L  L    V +N L+  +PE
Sbjct: 104 Y---LDACDNRLS-TLPELPASLKHL---DVDNNQLT-MLPE 137

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 1/64 (1%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
                 NR+   IP+ +  L     +IL  N L  ++   L +                 
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 62  IPPC 65
               
Sbjct: 270 DGQQ 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 16/208 (7%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           L L  N+++  I +     L +L  L ++ N+L  ++P  L   + L  L + +N +  +
Sbjct: 83  LVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKV 138

Query: 62  IPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
               F     ++     G+ L+    S      +   +   L I    ++         +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLE---NSGFEPGAFDGLKLNYLRI----SEAKLTGIPKDL 191

Query: 121 VSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
              L+ L L  NK I  I  +     +++  L L HN +      + S L  +  L L  
Sbjct: 192 PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           N+L+ ++P  L +L  L V  +  NN++
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 50/219 (22%), Positives = 74/219 (33%), Gaps = 24/219 (10%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +LDL  N ++    D   GL  L  L+L +N +          L +LQ L +S N+L  +
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIY-----REKKILEIFEFTTKNIAYT 115
            P    +   L    +    +     S L     I       E    E   F        
Sbjct: 118 PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK---- 173

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIES 174
                   L+ L +S  KL   I         +  L+L HN  I  I          +  
Sbjct: 174 --------LNYLRISEAKLT-GIPK--DLPETLNELHLDHNK-IQAIELEDLLRYSKLYR 221

Query: 175 LDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
           L L +NQ+       L  L TL    + +N LS ++P  
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 44/191 (23%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
             L +S  +L   IP   D    L+ L L HN ++      L R ++L  L L +N +  
Sbjct: 175 NYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 61  LIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           +         TL E + + + L                                      
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGL------------------------------P 261

Query: 120 VVSYLSGLDLSCNKL-------ICHISPQIGNLTRIQTLNLSHNDL-IGTI-PSTFSNLK 170
            +  L  + L  N +        C +   +        ++L +N +    + P+TF  + 
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 171 HIESLDLSYNQ 181
              ++     +
Sbjct: 321 DRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 40/214 (18%), Positives = 70/214 (32%), Gaps = 43/214 (20%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           ++  S   L  ++P  +      + L L +N++          L  L  L L NN +  +
Sbjct: 37  VVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               F              L+     ++ KN        ++EI      +          
Sbjct: 94  HEKAFSPLR---------KLQKL---YISKN-------HLVEIPPNLPSS---------- 124

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTI--PSTFSNLKHIESLDLS 178
             L  L +  N+ I  +   +   L  +  + +  N L  +   P  F  LK +  L +S
Sbjct: 125 --LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRIS 180

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
             +L   IP  L    TL    + HN +   I  
Sbjct: 181 EAKLT-GIPKDL--PETLNELHLDHNKIQ-AIEL 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 43/211 (20%), Positives = 62/211 (29%), Gaps = 39/211 (18%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           + L  NR++            L+ L L  N L          L  L+ LDLS+N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 63  PP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P  F       TLH        L P                    +F            
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGP-------------------GLFRGLAA------- 130

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L  L L  N  +  +      +L  +  L L  N +       F  L  ++ L 
Sbjct: 131 ------LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           L  N++    P    +L  L    +  NNLS
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 39/187 (20%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLHG 60
           IL L  N L         GL+ L  L L+ N     V       L +L  L L    L  
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 61  LIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
           L P  F        L+   +   +L                     + F           
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPD-------------------DTFRDLGN------ 154

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
                  L+ L L  N++   +  +    L  +  L L  N +    P  F +L  + +L
Sbjct: 155 -------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 176 DLSYNQL 182
            L  N L
Sbjct: 207 YLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 44/187 (23%), Positives = 62/187 (33%), Gaps = 39/187 (20%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           LDLS N    S+      GL +L  L L    L+   P     L  LQ L L +N L  L
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
               F +    T L    +  SS+                       F            
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPE-------------------RAFRGLHS------- 178

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L  L L  N++  H+ P    +L R+ TL L  N+L        + L+ ++ L 
Sbjct: 179 ------LDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 177 LSYNQLN 183
           L+ N   
Sbjct: 232 LNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 44/212 (20%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
                  L  ++P  +   +    + L  N +             L +L L +N L  + 
Sbjct: 16  TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 63  PPCFDN----TTLHESYSNG-SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
              F        L  S +    S+ P                     F    +       
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDP-------------------ATFHGLGR------- 106

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESL 175
                 L  L L    L   + P +   L  +Q L L  N  +  +P  TF +L ++  L
Sbjct: 107 ------LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHL 158

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            L  N+++         L++L    +  N ++
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLSY 179
             L+ L L  N  +  I       L  ++ L+LS N  + ++   TF  L  + +L L  
Sbjct: 56  RNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 180 NQLNGKIP----LQLVELNTLAVFSVAHNNLSGKIPE 212
             L  ++       L  L  L    +  N L   +P+
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYL---YLQDNALQ-ALPD 146

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 50/239 (20%), Positives = 97/239 (40%), Gaps = 33/239 (13%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKV--PVQLCRLNQLQLLDLSNNNL 58
           IL L YN+    +     +GL+ L  L L   NL+G V        L  L++L L +NN+
Sbjct: 83  ILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 59  HGLIP-PCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA 113
             + P   F N      L  +++   S+   +        +       + + +     + 
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 114 YTYQG--RVVSYLSGLDLSCNKLICHISPQI---GNLTRIQTLNLSHNDLIGTI------ 162
           +   G     + ++ LDLS N     ++ +       T+IQ+L LS++  +G+       
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 163 ----PSTFSNLK--HIESLDLSYNQL---NGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
                 TF  L+   +++ DLS +++      +     +L  L   ++A N ++ KI +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL---TLAQNEIN-KIDD 316

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 27/205 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGL--SQLSHLILAHNNLEGKVPVQLC--------RLNQLQLL 51
           +LDL++N++     + +        + L L+   L+      L         +   +  L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 52  DLSNNNLHGLIPPCFDNTT---------LHESYSNGSSLKPFETSFLVKNIYIYREKKIL 102
           DLS N     +   F +           L  SY+ GSS             +   E   +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 103 EIFEFTTKNIAYTYQGRVVSYLSG---LDLSCNKLICHISPQI-GNLTRIQTLNLSHNDL 158
           +  + +   I       V S+ +    L L+ N+ I  I       LT +  LNLS N  
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-F 334

Query: 159 IGTIPS-TFSNLKHIESLDLSYNQL 182
           +G+I S  F NL  +E LDLSYN +
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 37/187 (19%), Positives = 53/187 (28%), Gaps = 34/187 (18%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-LNQLQLLDLSNNNLHG 60
            +DLS N +          L  L  L +        +     R L+ L +L L  N    
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 61  LIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           L    F+    L        +L       ++              F+  T          
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLD----GAVLSG----------NFFKPLTS--------- 130

Query: 120 VVSYLSGLDLSCNKLICHISPQI--GNLTRIQTLNLSHNDLIGTIPSTFSNL--KHIESL 175
               L  L L  N +   I P     N+ R   L+L+ N +         N   KH   L
Sbjct: 131 ----LEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 176 DLSYNQL 182
            LS   L
Sbjct: 186 RLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 124 LSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           L  L +        I       L+ +  L L +N  +      F+ L ++E L L+   L
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 183 N 183
           +
Sbjct: 116 D 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 8e-10
 Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 61/211 (28%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNNNLH 59
           +LDLS+N L+    +     L+ L  L+L+HN+L   +  +    +  L+ LDLS+N+LH
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
            L                                          +F              
Sbjct: 102 TL-DE--------------------------------------FLFSDLQA--------- 113

Query: 120 VVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSN---LKHIESL 175
               L  L L  N  I  +      ++ ++Q L LS N +         +   L  +  L
Sbjct: 114 ----LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVA-HNN 205
           DLS N+L       L +L       +  HNN
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 61/188 (32%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           L LS+N LN  I       +  L +L L+ N+L          L  L++L L NN++  +
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               F++                                                     
Sbjct: 128 DRNAFEDMA--------------------------------------------------- 136

Query: 122 SYLSGLDLSCNKLICHISPQI----GNLTRIQTLNLSHNDLIGTIPSTFSNLKHI--ESL 175
             L  L LS N++      ++      L ++  L+LS N L     +    L       L
Sbjct: 137 -QLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 176 DLSYNQLN 183
            L  N L 
Sbjct: 195 YLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 127 LDLSCNKLICHISPQI--GNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLSYNQLN 183
           LDLS N  +  +  +     LT + +L LSHN  +  I S  F  + ++  LDLS N L+
Sbjct: 44  LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 184 GKIPLQLVELNTLAVFSVAHNNLS 207
                   +L  L V  + +N++ 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 1   MILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQ----LCRLNQLQLLDLSN 55
            +L L  N +   +     + ++QL  L L+ N +  + PV+      +L +L LLDLS+
Sbjct: 115 EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172

Query: 56  NNLHGLIPPCFDNTT 70
           N L  L         
Sbjct: 173 NKLKKLPLTDLQKLP 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 24/207 (11%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL- 61
                  +    PD  D  ++     L   ++   V      LN +  +  +N+++  + 
Sbjct: 4   TITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 59

Query: 62  -IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
            I    + T L  + +  + +KP      +  +++    KI ++                
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE-NKIKDLSSLKD----------- 107

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
           +  L  L L  N  I  I+  + +L ++++L L +N +  T  +  S L  +++L L  N
Sbjct: 108 LKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN 163

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLS 207
           Q++  +PL    L  L    ++ N++S
Sbjct: 164 QISDIVPLA--GLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL- 61
           L L+ N+L   I  L   L  L  L L  N ++      L  L +L+ L L +N +  + 
Sbjct: 70  LFLNGNKLT-DIKPL-TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN 125

Query: 62  -IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
            +       +L+   +  + +        +  + +  + +I +I                
Sbjct: 126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL-EDNQISDIVPLAG----------- 173

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
           ++ L  L LS N  I  +   +  L  +  L L   + +    +  SNL    ++  +  
Sbjct: 174 LTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGN 228
            L    P  + +       +V  +            +   +    +  
Sbjct: 232 SLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 36/185 (19%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE--GKVPVQLCRLNQLQLLDLSNNNLHG 60
           LD S N L  ++ +    L++L  LIL  N L+   K+     ++  LQ LD+S N++  
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 61  LIPPC-FDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
                      +L     + + L       L                             
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-------------------------- 422

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
                +  LDL  NK+   I  Q+  L  +Q LN++ N L       F  L  ++ + L 
Sbjct: 423 -----IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 179 YNQLN 183
            N  +
Sbjct: 477 TNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 59/211 (27%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           ++D S N L   +P   D   + + L ++ N +       +  L++L++L +S+N +  L
Sbjct: 4   LVDRSKNGLI-HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               F                                                       
Sbjct: 61  DISVFKFNQE-------------------------------------------------- 70

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG-TIPSTFSNLKHIESLDLSYN 180
             L  LDLS NKL+            ++ L+LS N      I   F N+  ++ L LS  
Sbjct: 71  --LEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
            L     L +  LN   V  V       K  
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 3   LDLSYNRLNGSIPD--LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           LDLS+N  + ++P       +SQL  L L+  +LE    + +  LN  ++L +       
Sbjct: 95  LDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 61  LIPP----CFDNTTLHESY-SNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYT 115
              P     F+  +LH  + +N       + S            K +      +  ++  
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 116 YQGRVVSYLSGLDLSCNKLICHISPQIGNL---TRIQTLNLSHNDLIGTIPS-----TFS 167
            + +    LS L L+  +   +   +I  L   T +   ++S+  L G +       + +
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +LK +    +  +             + + + +   +   
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 34/236 (14%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           IL++S N ++      +  LS+L  LI++HN ++           +L+ LDLS+N L  +
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                 N   L  S++   +L                     + F   ++          
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPI------------------CKEFGNMSQ---------- 116

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L LS   L       I +L   + L +               L+   +  L   
Sbjct: 117 ---LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIV 171

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
               K    +++++   V ++  +N+   + +    +     +  + N  L  L L
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            LD+S N ++             L  L ++ N L   +   L    ++++LDL +N +  
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS 435

Query: 61  LIPPCFDNTTLHESYSNGSSLK 82
           +         L E     + LK
Sbjct: 436 IPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 32/229 (13%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           IL +S+NR+      +     +L +L L+HN L     +       L+ LDLS N    L
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDAL 105

Query: 62  -IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
            I   F N      L  S ++         + L           I ++     +      
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL----------NISKVLLVLGETYGEKE 155

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL-----------IGTIPST 165
               +   +   L            I +++     NL  +++             +I + 
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 166 FSNLKHIESLDLSYNQLNGKI---PLQLVELNTLAVFSVAHNNLSGKIP 211
                 + +L L+  +         LQLV   T+  FS+++  L G++ 
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 7/216 (3%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
            ILD+S   +       +  + + +      + L             L  ++ + N+   
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-- 118
           ++   +  T  + S SN       +        Y     K L I +  +    +      
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDF---DYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
            + S ++  + + +            ++    L+ S+N L  T+     +L  +E+L L 
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 179 YNQLN--GKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
            NQL    KI     ++ +L    ++ N++S    +
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 31/226 (13%), Positives = 71/226 (31%), Gaps = 31/226 (13%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG----------KVPVQLCRLNQLQL 50
            + +L+ N +  +    +  L  + H  + + ++                    L  L +
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 51  LDLSNNNLHGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFE 106
             + ++         ++        + + S    +     S +                +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP----------FLHLD 330

Query: 107 FTTKNIAYTYQG--RVVSYLSGLDLSCNKL--ICHISPQIGNLTRIQTLNLSHNDLIGTI 162
           F+   +  T       ++ L  L L  N+L  +  I+     +  +Q L++S N +    
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 163 PS-TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
                S  K + SL++S N L   I   L     + V  +  N + 
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L++S N L  +I        ++  L L  N ++  +P Q+ +L  LQ L++++N L  +
Sbjct: 403 SLNMSSNILTDTIFR--CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459

Query: 62  IPPCFDN 68
               FD 
Sbjct: 460 PDGIFDR 466

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLH 59
           +LDL  N++  SIP  V  L  L  L +A N L+        RL  LQ + L  N   
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 45/216 (20%), Positives = 72/216 (33%), Gaps = 44/216 (20%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
            LDLS+N L            +L  L L+   ++  +       L+ L  L L+ N +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 61  LIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
           L    F        L    +N +SL+ F    L                           
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT------------------------- 125

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE-- 173
                  L  L+++ N +     P+   NLT ++ L+LS N +     +    L  +   
Sbjct: 126 -------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 174 --SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
             SLDLS N +N  I     +   L   ++  N L 
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 34/184 (18%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L+ N +         GLS L  L+    NL       +  L  L+ L++++N +   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 62  IPP-CFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
             P  F N      L  S +   S+   +   L +   +                     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS------------------ 181

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                     LDLS N +   I P      R++ L L  N L       F  L  ++ + 
Sbjct: 182 ----------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

Query: 177 LSYN 180
           L  N
Sbjct: 231 LHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 49/171 (28%)

Query: 48  LQLLDLSNNNLHGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILE 103
            + LDLS N L  L    F +      L  S     +++                     
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-------------------G 70

Query: 104 IFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTI 162
            ++  +              LS L L+ N +   ++      L+ +Q L     + + ++
Sbjct: 71  AYQSLSH-------------LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN-LASL 115

Query: 163 PS-TFSNLKHIESLDLSYNQLNGKIPL-----QLVELNTLAVFSVAHNNLS 207
            +    +LK ++ L++++N +     L      L  L  L    ++ N + 
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHL---DLSSNKIQ 162

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 31/202 (15%), Positives = 73/202 (36%), Gaps = 24/202 (11%)

Query: 11  NGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-- 68
           N +IPD     S     +           +   ++N L  + L+N N+  L     +   
Sbjct: 14  NVNIPD-----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAH 66

Query: 69  --TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSG 126
               L  +  + ++  P      ++ + I  +    +     +   +          L+ 
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS----------LTL 116

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
           LD+S +     I  +I  L ++ +++LS+N  I  I      L  ++SL++ ++ ++   
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYR 175

Query: 187 PLQLVELNTLAVFSVAHNNLSG 208
            ++  +   L         + G
Sbjct: 176 GIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
           +  L ++      + +P I  L+ ++ L +   D+        S L  +  LD+S++  +
Sbjct: 68  IKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 184 GKIPLQLVELNTLAVFSVAHNNLSGKI 210
             I  ++  L  +    +++N     I
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
           L+ + L+    +  ++  I     I+ L +++     T  +  S L ++E L +    + 
Sbjct: 46  LTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVT 101

Query: 184 GKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
                 L  L +L +  ++H+     I  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 33/154 (21%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L ++        P  + GLS L  L +   ++       L  L  L LLD+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
               +             L    +  L  N  I     I+ +                  
Sbjct: 129 LTKINT------------LPKVNSIDLSYNGAI---TDIMPLKTLPE------------- 160

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN 156
            L  L++  +  +      I +  ++  L     
Sbjct: 161 -LKSLNIQFDG-VHDYRG-IEDFPKLNQLYAFSQ 191

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 42/211 (19%), Positives = 60/211 (28%), Gaps = 31/211 (14%)

Query: 3   LDLSYNRLNGSIPDLVD----GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNL 58
           L+L           L +        L  L +A  +       Q+     L  LDLS+N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 59  HGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
            G             S          +   L              +     +        
Sbjct: 186 LGERG--------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ-------- 229

Query: 119 RVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
                L GLDLS N L            +++ +LNLS   L        + L     LDL
Sbjct: 230 -----LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDL 281

Query: 178 SYNQLNGKIPLQLVELNTLAVFSVAHNNLSG 208
           SYN+L+   P    EL  +   S+  N    
Sbjct: 282 SYNRLDR-NPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 15/199 (7%)

Query: 23  QLSHLILAHNNLEGKVPVQLCRL---NQLQLLDLSNNNLHGLIPP---CFDNTTLHESYS 76
            L  L +    +  ++     R+   + LQ L L N  + G  PP         L+    
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 77  NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC 136
              S    +        ++    K+L I +  + N     Q RV   LS LDLS N  + 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELG 187

Query: 137 HI----SPQIGNLTRIQTLNLSHN---DLIGTIPSTFSNLKHIESLDLSYNQLNGKIP-L 188
                 +        +Q L L +       G   +  +    ++ LDLS+N L       
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 189 QLVELNTLAVFSVAHNNLS 207
                + L   +++   L 
Sbjct: 248 SCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 38/166 (22%), Positives = 52/166 (31%), Gaps = 39/166 (23%)

Query: 2   ILDLSYNRLNGSIP----DLVDGLSQLSHLILAHNNLE---GKVPVQLCRLNQLQLLDLS 54
            LDLS N   G               L  L L +  +E   G          QLQ LDLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 55  NNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY 114
           +N+L               S    S L     SF            + ++ +        
Sbjct: 237 HNSLRDAAGA--------PSCDWPSQLNSLNLSF---T-------GLKQVPKGLPAK--- 275

Query: 115 TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160
                    LS LDLS N+L    +P    L ++  L+L  N  + 
Sbjct: 276 ---------LSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 121 VSYLSGLDLSCNKLICHISP-QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
           ++ L+  ++S       ++  Q      ++ L+++    +            + +LDLS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 180 NQLNGKIPL----QLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS 221
           N   G+  L      ++  TL V ++ +  +       +A  A   
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 34/206 (16%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            +    N L   +PDL      L  ++  +N LE     +L  L  L  +   NN L  L
Sbjct: 199 AIYADNNSLK-KLPDL---PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTL 252

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                    L+   +  + L                      +         ++    + 
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPEL----------------PQSLTFLDVSENIFSGLSELP 296

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  L+ S N+ I  +     +L     LN+S+N LI  +P+    L   E L  S+N 
Sbjct: 297 PNLYYLNASSNE-IRSLCDLPPSLE---ELNVSNNKLI-ELPALPPRL---ERLIASFNH 348

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           L  ++P     L  L    V +N L 
Sbjct: 349 LA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 38/218 (17%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQL-------------CRLNQLQ 49
                + L   +P   + +   +    A +  E   P                C   Q  
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 50  LLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT 109
            L+L+N  L  L        +L  S ++ + L P     L                    
Sbjct: 75  ELELNNLGLSSLPELPPHLESLVASCNSLTEL-PELPQSLKS---------------LLV 118

Query: 110 KNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNL 169
            N        +   L  L +S N+L     P++ N + ++ +++ +N L   +P    +L
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPDLPPSL 175

Query: 170 KHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +    +    NQL  ++P +L  L  L      +N+L 
Sbjct: 176 EF---IAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 29/211 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L +  N L  ++ DL      L +L +++N LE K+P +L   + L+++D+ NN+L  L 
Sbjct: 116 LLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKL- 168

Query: 63  PPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           P    +   +    +    L   +    +  IY      + ++ +               
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA-DNNSLKKLPDLPLS----------- 216

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  +    N L     P++ NL  + T+   +N L  T+P    +L+   +L++  N 
Sbjct: 217 --LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNY 268

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           L   +P     L  L V     + LS   P 
Sbjct: 269 LT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 32/206 (15%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           I+D+  N L   +PDL      L  +   +N LE ++P +L  L  L  +   NN+L  L
Sbjct: 157 IIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL 210

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                   ++    +    L   +    +  IY      +  + +               
Sbjct: 211 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN-NLLKTLPDLPPS----------- 258

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  L++  N L   +     +LT +       + L         NL +   L+ S N+
Sbjct: 259 --LEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGL----SELPPNLYY---LNASSNE 308

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           +   +      L  L   +V++N L 
Sbjct: 309 IR-SLCDLPPSLEEL---NVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 41/208 (19%)

Query: 20  GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS 79
             + L   +   +NL  ++PV+   +        + +      PP               
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 80  SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHIS 139
            L        + N        +  + E                +L  L  SCN L   + 
Sbjct: 68  CLDRQAHELELNN------LGLSSLPEL-------------PPHLESLVASCNSLT-ELP 107

Query: 140 PQIGNLTRIQTLNLSHNDLIGTIPS---------------TFSNLKHIESLDLSYNQLNG 184
               +L  +   N +   L    P                   N   ++ +D+  N L  
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK- 166

Query: 185 KIPLQLVELNTLAVFSVAHNNLSGKIPE 212
           K+P     L  +   +  +N L  ++PE
Sbjct: 167 KLPDLPPSLEFI---AAGNNQLE-ELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 31/182 (17%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L+ S N +  S+ DL      L  L +++N L  ++P       +L+ L  S N+L  + 
Sbjct: 302 LNASSNEIR-SLCDL---PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEV- 352

Query: 63  PPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
           P    N   LH  Y+      P     +     +     + E+ E               
Sbjct: 353 PELPQNLKQLHVEYNPLREF-PDIPESVED---LRMNSHLAEVPELPQN----------- 397

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  L +  N L         ++     L ++   ++            +E     ++ 
Sbjct: 398 --LKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 182 LN 183
            +
Sbjct: 452 HH 453

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 30/184 (16%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCR-LNQLQLLDLSNNNLH 59
            +++S N +   I   V   L +L  + +   N    +  +  + L  LQ L +SN  + 
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
            L      ++                       + I     I  I   +   ++      
Sbjct: 118 HLPDVHKIHSLQ------------------KVLLDIQDNINIHTIERNSFVGLS------ 153

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLS 178
                  L L+ N  I  I     N T++  LNLS N+ +  +P+  F        LD+S
Sbjct: 154 --FESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 179 YNQL 182
             ++
Sbjct: 211 RTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 42/184 (22%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNN----LEGKVPVQLCRLNQLQLLDLSNNN 57
           L +S   +   +PD+      Q   L +  N     +E    V L    +  +L L+ N 
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNG 165

Query: 58  LHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
           +  +    F+ T L E                   + +     + E+             
Sbjct: 166 IQEIHNSAFNGTQLDE-------------------LNLSDNNNLEELPNDVFHGA----- 201

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
               S    LD+S  + I  +      NL +++  +  +   + T       L  +    
Sbjct: 202 ----SGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEAS 252

Query: 177 LSYN 180
           L+Y 
Sbjct: 253 LTYP 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 41/229 (17%), Positives = 65/229 (28%), Gaps = 89/229 (38%)

Query: 45  LNQLQLL------DLSNNNLHGLIPPCFDNTTLHESYSNGSSL---KPFETSFLV-KNIY 94
           L  LQ L      + ++ + H           +H   +    L   KP+E   LV  N+ 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 95  IYREKKILEIFEF------TTKNI--------AYTYQGRVVSYLSG-------------L 127
                K    F        TT+          A T    +  +                L
Sbjct: 255 ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 128 DLSCNKL---ICHISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHI------ES 174
           D     L   +   +P            LS   +I        +T+ N KH+        
Sbjct: 312 DCRPQDLPREVLTTNP----------RRLS---IIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 175 LDLSYNQLNGKIPLQLVEL-NTLAVF--SVAHNNLSGKIPE------WT 214
           ++ S N L    P +  ++ + L+VF  S         IP       W 
Sbjct: 359 IESSLNVLE---PAEYRKMFDRLSVFPPSA-------HIPTILLSLIWF 397

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 13/203 (6%)

Query: 5   LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP 64
           +                 QL    L+       +  +L    +LQ  +L   N   L+  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQ--ELEPENKWCLLTI 388

Query: 65  CFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYL 124
                 L        +L+ F T   V  +       +   F      +   Y    V +L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 125 SGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG 184
           +  DL+    +CH+      L  +  L+LSHN L   +P   + L+ +E L  S N L  
Sbjct: 449 AHKDLTV---LCHL----EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499

Query: 185 KIPLQLVELNTLAVFSVAHNNLS 207
            +   +  L  L    + +N L 
Sbjct: 500 NVD-GVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           LDLS+NRL  ++P  +  L  L  L  + N LE  V   +  L +LQ L L NN L   
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG-KVPVQLCRLNQLQLLDLSNNNL 58
           +L  S N L  ++  +   L +L  L+L +N L+       L    +L LL+L  N+L
Sbjct: 490 VLQASDNALE-NVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS--TFSNLKHIESLDLSY 179
             L  L  S N  + ++   + NL R+Q L L +N  +    +     +   +  L+L  
Sbjct: 486 RCLEVLQASDNA-LENVDG-VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542

Query: 180 NQL 182
           N L
Sbjct: 543 NSL 545

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 30/185 (16%)

Query: 2   ILDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCR-LNQLQLLDLSNNNLH 59
            + +S +     +       LS+++H+ + +      +     + L  L+ L + N  L 
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 60  GLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
                                     ++ +   + I     +  I     + +       
Sbjct: 119 MFPDLTK-----------------VYSTDIFFILEITDNPYMTSIPVNAFQGL------- 154

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKH-IESLDL 177
             +    L L  N     +     N T++  + L+ N  +  I    F  +      LD+
Sbjct: 155 -CNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 178 SYNQL 182
           S   +
Sbjct: 213 SQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLSYNQL 182
              L L    L    S    NL  I  + +S +  +  + S +F NL  +  +++   + 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 183 NGKIPLQ-LVELNTLAVFSVAHNNLSGKIPEWTA 215
              I    L EL  L    + +  L    P+ T 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK 125

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 35/181 (19%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVP--VQLCRLNQLQLLDLSNNNLH 59
           +++   R    I       L  L  L + +  L+   P   ++   +   +L++++N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 60  GLIPP-CFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
             IP   F                   T  L  N           +  +           
Sbjct: 144 TSIPVNAFQGLC-----------NETLTLKLYNN-------GFTSVQGYAFNG------- 178

Query: 119 RVVSYLSGLDLSCNKLICHISPQI--GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
              + L  + L+ NK +  I      G  +    L++S   +         +LK + + +
Sbjct: 179 ---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 177 L 177
            
Sbjct: 236 T 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 41/186 (22%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           IL LS N L       +   ++L+ L L    L  K+ V    L  L  LDLS+N L  L
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSL 92

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
            P         T L  S++  +SL                            +       
Sbjct: 93  -PLLGQTLPALTVLDVSFNRLTSLPL-------------------GALRGLGE------- 125

Query: 118 GRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                 L  L L  N+L   + P +     +++ L+L++N+L        + L+++++L 
Sbjct: 126 ------LQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 177 LSYNQL 182
           L  N L
Sbjct: 179 LQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 44/181 (24%), Positives = 60/181 (33%), Gaps = 36/181 (19%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+L    L   +  +   L  L  L L+HN L+  +P+    L  L +LD+S N L  L
Sbjct: 59  QLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                     L E Y  G+ LK                     +   T K          
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPG----------------LLTPTPK---------- 149

Query: 121 VSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
              L  L L+ N L   +   +   L  + TL L  N L  TIP  F     +    L  
Sbjct: 150 ---LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHG 204

Query: 180 N 180
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
           L+ L+L   +L        G L  + TL+LSHN L  ++P     L  +  LD+S+N+L 
Sbjct: 57  LTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT 113

Query: 184 GKIPL----QLVELNTLAVFSVAHNNLS 207
             +PL     L EL  L    +  N L 
Sbjct: 114 -SLPLGALRGLGELQEL---YLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 21/142 (14%)

Query: 48  LQLLDLSNNNLHGLIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIY--REKKI 101
             +L LS N L+             T L+   +  + L+   T  ++  + +   + + +
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 102 LEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIG 160
             + +                 L+ LD+S N+L   +       L  +Q L L  N+L  
Sbjct: 93  PLLGQTLPA-------------LTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138

Query: 161 TIPSTFSNLKHIESLDLSYNQL 182
             P   +    +E L L+ N L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNL 160

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 31/186 (16%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           MI  +       S   L    ++++  +L+ ++      V     +    L+ + N    
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 61  LIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
            +         L       + LK F    L     + +    LE  + +  ++      R
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVAL-----MTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 120 VVSY---LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
             ++   +  L+LS N L   +   +    +++ L+L +N +  +IP   ++L+ ++ L+
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELN 479

Query: 177 LSYNQL 182
           ++ NQL
Sbjct: 480 VASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 30/180 (16%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+ + N    S+      L +L  LIL  N L+            +  L+  + +L+ L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSL 415

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               +D T                              + + +   ++  +  +    + 
Sbjct: 416 NSHAYDRTC--------------------------AWAESILVLNLSSNMLTGSVFRCLP 449

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP-STFSNLKHIESLDLSYN 180
             +  LDL  N+++  I   + +L  +Q LN++ N L  ++P   F  L  ++ + L  N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 10/212 (4%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEG-KVPVQLCRLNQLQLLDLSNNNLHGL 61
           LD+S+NRL  +I      ++ L HL L+ N+ +   V  +   L +L  L LS      L
Sbjct: 105 LDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                 +  L     +  S            I       ++                 + 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 122 S-YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLK-----HIESL 175
              LS + L+       ++           LN++   +  T   +    +      +E L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           ++    +  +I  +    +  A+ S+   ++ 
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVK 313

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN 57
           +LDL  NR+  SIP  V  L  L  L +A N L+        RL  LQ + L +N 
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 30/212 (14%), Positives = 74/212 (34%), Gaps = 30/212 (14%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-----VQLCRLNQLQLLDLSNNN 57
           + L+       +  L +     + L +   ++E          Q      ++ L++ N  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 58  LHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
           +   I          E   + ++LK      +   ++++ ++ +  +F            
Sbjct: 288 ITERID-------REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF------------ 328

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
               + ++   LS +           + +    LN + N    ++    S LK +++L L
Sbjct: 329 ----AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 178 SYNQLN--GKIPLQLVELNTLAVFSVAHNNLS 207
             N L    K+ L    +++L    V+ N+L+
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 127 LDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           L LS N  I  +    I  L+ ++ L LSHN +       F   + +E LD+S+N+L
Sbjct: 57  LSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 64/217 (29%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           ++D S   L   +P   D   +   L L+ N++       +  L++L++L LS+N +  L
Sbjct: 35  MVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               F                                                       
Sbjct: 92  DFHVFLFNQD-------------------------------------------------- 101

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP--STFSNLKHIESLDLSY 179
             L  LD+S N+L  +IS     +  ++ L+LS ND    +P    F NL  +  L LS 
Sbjct: 102 --LEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSA 155

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ 216
            +      L L+ +  L +  +  + +S  I     +
Sbjct: 156 AKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETE 189

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-08
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           L +   +    +      GL +L +L +  + L    P       +L  L+LS N L  L
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95

Query: 62  IPPCFDNTTLHESYSNGSSL 81
                   +L E   +G+ L
Sbjct: 96  SWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-08
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 124 LSGLDLSCNKLICHISPQ-IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           L+ L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+LS+N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 183 NGKIPLQLVELNTLAVFSVAHNNL 206
              +  + V+  +L    ++ N L
Sbjct: 93  E-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 140 PQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAV 198
             +     +  L + +   +  +       L  + +L +  + L    P        L+ 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 199 FSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
            +++ N L   +   T Q  +  E    GN   C
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 8  NRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDLSNNNLHGLIPPCF 66
                    + G   L+ L + +      +    L  L +L+ L +  + L  + P  F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 67 DNTT 70
            T 
Sbjct: 77 HFTP 80

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 26/208 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           +    + +  ++      L  ++ L      +       +  LN L  L+L +N +   +
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITD-L 78

Query: 63  PPCFDNTTLHE---SYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
            P  + T + E   S +   ++        +K + +    +I ++               
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS-TQITDVTPLAG---------- 127

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
            +S L  L L  N++  +ISP +  LT +Q L++ +  +  +  +  +NL  + +L    
Sbjct: 128 -LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADD 182

Query: 180 NQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           N+++   PL    L  L    + +N +S
Sbjct: 183 NKISDISPLA--SLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 37/209 (17%), Positives = 82/209 (39%), Gaps = 28/209 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L      +  +I  +   L+ L  L L  N +    P  L  L ++  L+LS N L  + 
Sbjct: 46  LSAFGTGVT-TIEGV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS 101

Query: 63  PPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
                      TL  + +  + + P      ++ +Y+    +I  I              
Sbjct: 102 A--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL-NQITNISPLAG--------- 149

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
             ++ L  L +   + +  ++P + NL+++ TL    N +  +  S  ++L ++  + L 
Sbjct: 150 --LTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLK 203

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            NQ++   PL     + L + ++ +  ++
Sbjct: 204 NNQISDVSPLA--NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 19  DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN----TTLHES 74
             L+    +    +N+   V      L+ +  L      +  +             L   
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 75  YSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKL 134
            +  + L P +    +  + +     +  +                +  +  LDL+  + 
Sbjct: 72  DNQITDLAPLKNLTKITELELSG-NPLKNVSAIAG-----------LQSIKTLDLTSTQ- 118

Query: 135 ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN 194
           I  ++P +  L+ +Q L L  N +  T  S  + L +++ L +   Q++   PL    L+
Sbjct: 119 ITDVTP-LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLA--NLS 173

Query: 195 TLAVFSVAHNNLS 207
            L       N +S
Sbjct: 174 KLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 33/197 (16%), Positives = 79/197 (40%), Gaps = 24/197 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L+L  N++   +  L   L++++ L L+ N L+      +  L  ++ LDL++  +   +
Sbjct: 68  LELKDNQIT-DLAPL-KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD-V 122

Query: 63  PPCFDNTTLHE---SYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
            P    + L       +  +++ P      ++ + I    ++ ++               
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG-NAQVSDLTPLAN---------- 171

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
            +S L+ L    NK I  ISP + +L  +  ++L +N +  +  S  +N  ++  + L+ 
Sbjct: 172 -LSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTN 226

Query: 180 NQLNGKIPLQLVELNTL 196
             +  +       L   
Sbjct: 227 QTITNQPVFYNNNLVVP 243

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 34/184 (18%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
            LDL  N+L+         L++L  L L  N L+  +P  +   L  L+ L +++N L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 61  LIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           L    FD    L E   + + LK                     +F+  TK         
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPR----------------VFDSLTK--------- 134

Query: 120 VVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
               L+ L L  N+L   +   +   LT ++ L L +N L       F  L  +++L L 
Sbjct: 135 ----LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 179 YNQL 182
            NQL
Sbjct: 190 NNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 40/184 (21%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQL-CRLNQLQLLDLSNNNLHG 60
           L L+ N+L  ++P  +   L  L  L +  N L+  +P+ +  +L  L  L L  N L  
Sbjct: 66  LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 61  LIPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY 116
           L P  FD+    T L   Y+   SL                      +F+  T       
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPK-------------------GVFDKLTS------ 158

Query: 117 QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD 176
                  L  L L  N+L          LT ++TL L +N L       F +L+ ++ L 
Sbjct: 159 -------LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 177 LSYN 180
           L  N
Sbjct: 212 LQEN 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 38/205 (18%), Positives = 81/205 (39%), Gaps = 42/205 (20%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
            +L    +  ++    + L+ +  +I  +++++    +Q   L  +  L L+ N L    
Sbjct: 29  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKL---- 80

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                           ++LK     FL +N       K+ ++                + 
Sbjct: 81  ----------TDIKPLANLKNLGWLFLDEN-------KVKDLSSLKD-----------LK 112

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
            L  L L  N  I  I+  + +L ++++L L +N +  T  +  S L  +++L L  NQ+
Sbjct: 113 KLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 168

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLS 207
           +  +PL    L  L    ++ N++S
Sbjct: 169 SDIVPLA--GLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 24/185 (12%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L+ N+L   I  L   L  L  L L  N ++      L  L +L+ L L +N +  +
Sbjct: 72  KLFLNGNKLT-DIKPL-ANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI 127

Query: 62  IPPCFDN----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ 117
                 +     +L+   +  + +        +  + +  + +I +I             
Sbjct: 128 NG--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL-EDNQISDIVPLAG-------- 176

Query: 118 GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL 177
              ++ L  L LS N  I  +   +  L  +  L L   + +    +  SNL    ++  
Sbjct: 177 ---LTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 178 SYNQL 182
           +   L
Sbjct: 232 TDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/168 (17%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 42  LCRLNQLQLLDLSNNNLHGLIP-PCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREK 99
                +    +L   ++   +     ++   +  + S+  S++  +    V  +++    
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN- 78

Query: 100 KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI 159
           K+ +I                +  L  L L  NK +  +S  + +L ++++L+L HN + 
Sbjct: 79  KLTDIKPLAN-----------LKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGI- 124

Query: 160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
            +  +   +L  +ESL L  N++     L    L  L   S+  N +S
Sbjct: 125 -SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS 169

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 28/183 (15%), Positives = 51/183 (27%), Gaps = 55/183 (30%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           L L+ N         +   L QL  +  ++N +           + +  + L++N L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               F                      L                                
Sbjct: 97  QHKMFKG--------------------LES------------------------------ 106

Query: 122 SYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
             L  L L  N++ C +       L+ ++ L+L  N +    P  F  L  + +L+L  N
Sbjct: 107 --LKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

Query: 181 QLN 183
             N
Sbjct: 164 PFN 166

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 32/206 (15%), Positives = 62/206 (30%), Gaps = 26/206 (12%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L+   N +   +   ++   QL+ L  + N L     + +  L QL   D S N L  L
Sbjct: 195 RLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTEL 248

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                  + L   +   + L   + +   + IY   E          T N          
Sbjct: 249 --DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ-------- 298

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  LD     +       +    ++  L L++   +  +    S+   ++SL      
Sbjct: 299 --LYLLDCQAAGIT---ELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350

Query: 182 LNGKIPLQLVELNTLAVFSVAHNNLS 207
           +     +   ++  L     A     
Sbjct: 351 IQDFSSVG--KIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 38/204 (18%), Positives = 60/204 (29%), Gaps = 27/204 (13%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L+   N+L   +   V     L++L  A N L     + +    QL  LD   N      
Sbjct: 111 LNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITK- 163

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                 T L     + + +   + S       +  +   +   +                
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQ-----------NI 212

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
            L+ LD S NKL       +  LT++   + S N L     ST S L    +L      L
Sbjct: 213 QLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTELDVSTLSKL---TTLHCIQTDL 266

Query: 183 NGKIPLQLVELNTLAVFSVAHNNL 206
                + L     L  F       
Sbjct: 267 LE---IDLTHNTQLIYFQAEGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 26/205 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           LD   N+    +   V   +QL+ L  + N +     + + +   L  L+   NN+  L 
Sbjct: 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL- 206

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                N  L     + + L   + + L +  Y       L   + +T            S
Sbjct: 207 -DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL-----------S 254

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
            L+ L      L+      + + T++          I  +    ++   +  LD     +
Sbjct: 255 KLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI 309

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLS 207
                L L +   L    + +  L+
Sbjct: 310 T---ELDLSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 20/184 (10%)

Query: 24  LSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKP 83
            +  + A   ++    +   +L  L  LD  N+++  +       T L +     +++  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITT 78

Query: 84  FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIG 143
            + S      Y+  +   L   + T            ++ L+ L+   NKL       + 
Sbjct: 79  LDLSQNTNLTYLACDSNKLTNLDVTP-----------LTKLTYLNCDTNKL---TKLDVS 124

Query: 144 NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH 203
               +  LN + N L   I    S+   +  LD   N+   K+ +       L     + 
Sbjct: 125 QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSF 179

Query: 204 NNLS 207
           N ++
Sbjct: 180 NKIT 183

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +DLS N+++  +      GL  L+ L+L  N +          L  LQLL L+ N ++ L
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119

Query: 62  IPPCFDN 68
               F +
Sbjct: 120 RVDAFQD 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQL-CRLNQLQLLDLSNNNLHG 60
           L L  N++   +P  + +GL  L  L+L  N +   + V     L+ L LL L +N L  
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 61  LIPPCFDN 68
           +    F  
Sbjct: 143 IAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 58/184 (31%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
           + L  N +   IP        +L  + L++N +  ++       L  L  L L  N +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
           L P                                        +FE              
Sbjct: 95  L-PK--------------------------------------SLFEGLFS---------- 105

Query: 121 VSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY 179
              L  L L+ NK+ C +      +L  +  L+L  N L      TFS L+ I+++ L+ 
Sbjct: 106 ---LQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 180 NQLN 183
           N   
Sbjct: 162 NPFI 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 23/192 (11%)

Query: 18  VDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP--PCFDNTTLHESY 75
             GL+      L   ++   V      L+ +Q  +  N+N+  L       +   LH S+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 76  SNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLI 135
           +  S L P +    ++ + + R  ++  +    +              LS L L  N+ +
Sbjct: 73  NQISDLSPLKDLTKLEELSVNR-NRLKNLNGIPSAC------------LSRLFLDNNE-L 118

Query: 136 CHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNT 195
                 + +L  ++ L++ +N L          L  +E LDL  N++     L    L  
Sbjct: 119 RDTDS-LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLT--RLKK 173

Query: 196 LAVFSVAHNNLS 207
           +    +      
Sbjct: 174 VNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 27/211 (12%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
            +   + +  S+  +    + L  L L+HN +    P  L  L +L+ L ++ N L  L 
Sbjct: 46  FNGDNSNIQ-SLAGM-QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN 101

Query: 63  PPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQGRV 120
                  + L    +             ++ + I   K K + +  F +K          
Sbjct: 102 GIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSK---------- 151

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  LDL  N+ I +    +  L ++  ++L+    +         L    ++     
Sbjct: 152 ---LEVLDLHGNE-ITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV----K 202

Query: 181 QLNGKI--PLQLVELNTLAVFSVAHNNLSGK 209
             +G+   P  +    +     V        
Sbjct: 203 DPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 27/219 (12%), Positives = 69/219 (31%), Gaps = 28/219 (12%)

Query: 21  LSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT---LHESYSN 77
              LS ++ A   L     +++   N L +      NL  L                 S+
Sbjct: 161 QVDLSPVLDAMPLLNN---LKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 78  GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICH 137
             +L+       V++            F+         +       L  L +   +    
Sbjct: 218 LPNLEKLVLYVGVEDY----------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267

Query: 138 ISPQIGN---LTRIQTLNLSHNDL----IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL 190
           +         L +++T+++S   L       +      +KH++ +++ YN L+ ++  +L
Sbjct: 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

Query: 191 VELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNH 229
            +        +  +    +  +    +   +E  +  +H
Sbjct: 328 QK-----SLPMKIDVSDSQEYDDDYSYPMITELEHHHHH 361

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 44/181 (24%), Positives = 54/181 (29%), Gaps = 55/181 (30%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
           IL L  N++    P + D L  L  L L  N L   +PV +   L QL +LDL  N L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
           L    FD                     LV                              
Sbjct: 103 LPSAVFDR--------------------LVH----------------------------- 113

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L + CNKL   +   I  LT +  L L  N L       F  L  +    L  N
Sbjct: 114 ---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

Query: 181 Q 181
            
Sbjct: 170 P 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQL-CRLNQLQLLDLSNNNLHGL 61
           LDL    L         GL++L+ L L +N L+  +   +   L +L  L L+NN L  L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 62  IPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
               FD+ T L + Y  G+ LK   +                 +F+  TK          
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSG----------------VFDRLTK---------- 132

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
              L  L L+ N+L    +     LT +QTL+LS N L       F  L  ++++ L  N
Sbjct: 133 ---LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

Query: 181 QLN 183
           Q +
Sbjct: 190 QFD 192

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
           L LS N  I  IS  +  +  ++ L+L  N LI  I +  +    +E L +SYNQ+   +
Sbjct: 53  LALSTNN-IEKISS-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIA-SL 108

Query: 187 PLQLVELNTLAVFSVAHNNLS 207
              + +L  L V  +++N ++
Sbjct: 109 S-GIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
           L       I  +   +  L   + L LS N  I  I S+ S ++++  L L  N +  KI
Sbjct: 30  LHGMIPP-IEKMDATLSTLKACKHLALSTN-NIEKI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 187 PLQLVELNTLAVFSVAHNNLS 207
                  +TL    +++N ++
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +DLS NR++ ++ +     ++QL  LIL++N L    P     L  L+LL L  N++  +
Sbjct: 59  IDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

Query: 62  IPPCFDN 68
               F++
Sbjct: 118 PEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
           L L  N+    +  ++ N   +  ++LS+N +      +FSN+  + +L LSYN+L
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
            L L  N+    +P  +     L+ + L++N +   +  Q    + QL  L LS N L  
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 61  LIPPCFDNTT 70
           + P  FD   
Sbjct: 93  IPPRTFDGLK 102

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
            L+L  N+L      + D L+QL+ L L+ N ++  +P  +  +L +L +L L  N L  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS 90

Query: 61  LIPPCFDNTT 70
           L    FD  T
Sbjct: 91  LPNGVFDKLT 100

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 3   LDLSYNRLNGSIPDLV-DGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHG 60
           L+L  N+L   I     +G S +  L L  N ++ ++  ++   L+QL+ L+L +N +  
Sbjct: 59  LELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC 116

Query: 61  LIPPCFDN 68
           ++P  F++
Sbjct: 117 VMPGSFEH 124

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
           L  L L     +  +S  +  L +++ L LS N + G +      L ++  L+LS N+L 
Sbjct: 51  LEFLSLINVG-LISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
           LD   +     I         ++ L+L +   + ++ S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSNDG-KIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 187 PLQLVELNTLAVFSVAHNNLS 207
            +   +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNN 56
           L+LS NR+ G +  L + L  L+HL L+ N L+    ++ L +L  L+ LDL N 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI 186
           LDL   K I  I      L +   ++ S N+ I  +   F  L+ +++L ++ N++    
Sbjct: 24  LDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIG 80

Query: 187 PLQLVELNTLAVFSVAHNNLS 207
                 L  L    + +N+L 
Sbjct: 81  EGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            +D S N +   +      L +L  L++ +N +          L  L  L L+NN+L  L
Sbjct: 46  AIDFSDNEIR-KLDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN 183
           L  L       +  I+  +  L +++ L LS N + G +        ++  L+LS N++ 
Sbjct: 44  LEFLSTINVG-LTSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ-LCRLNQLQLLDLSNN 56
           L+LS NR++G +  L +    L+HL L+ N ++    ++ L +L  L+ LDL N 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 14/92 (15%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 117 QGRVVSYLSGLDLSCNKL-ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESL 175
           + R  S +  L L  ++     +         ++ L+  +   + +I +    L  ++ L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKL 69

Query: 176 DLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS 207
           +LS N+++G + +   +   L   +++ N + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.59
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.92

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.4e-29  Score=203.77  Aligned_cols=243  Identities=22%  Similarity=0.247  Sum_probs=189.9

Q ss_pred             EEEcccccccc--cCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccC
Q 048153            2 ILDLSYNRLNG--SIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSN   77 (257)
Q Consensus         2 ~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~   77 (257)
                      .|+|++|.+.+  .+|..|+.+++|++|++++ |.+.+..|..|+.+++|++|++++|.+++..|..+.... +..+...
T Consensus        54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  133 (313)
T 1ogq_A           54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence            68899999988  7888999999999999994 888888898899999999999999999877777665443 5556655


Q ss_pred             CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--cccc-ccceEEcccCccccccCCCcCCCCCcCEEecc
Q 048153           78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVS-YLSGLDLSCNKLICHISPQIGNLTRIQTLNLS  154 (257)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~-~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~  154 (257)
                      .+.+....       ...+..+..++.+++..+.+......  ..++ .|++|++++|.+.+..|..+..++ |+.|+++
T Consensus       134 ~N~l~~~~-------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          134 YNALSGTL-------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             SSEEESCC-------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCccCCcC-------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            55544211       12233455667777777665422211  1233 788999999998888888888877 9999999


Q ss_pred             CCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153          155 HNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL  234 (257)
Q Consensus       155 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  234 (257)
                      +|.+++..+..+..+++|+.|++++|++++..+. +..+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            9998888888888889999999999998855544 677889999999999998888888888999999999999988888


Q ss_pred             CCCCccCcccccccccCCc
Q 048153          235 PLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       235 ~~~~~~~~l~~l~~~~~~~  253 (257)
                      |.....+.++.+++++|..
T Consensus       285 p~~~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          285 PQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCSTTGGGSCGGGTCSSSE
T ss_pred             CCCccccccChHHhcCCCC
Confidence            8775668888888888863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3e-29  Score=203.24  Aligned_cols=228  Identities=30%  Similarity=0.474  Sum_probs=189.0

Q ss_pred             CEEEccc-ccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCC
Q 048153            1 MILDLSY-NRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~   78 (257)
                      ++|++++ |.+.+.+|..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+... .+..+....
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence            5799995 99998999999999999999999999998999999999999999999999998777766554 366666666


Q ss_pred             CCCC-CCcchhhhhhhhhhhccc-chhhcccccccccccccc--ccccccceEEcccCccccccCCCcCCCCCcCEEecc
Q 048153           79 SSLK-PFETSFLVKNIYIYREKK-ILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLS  154 (257)
Q Consensus        79 ~~l~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~  154 (257)
                      +.+. .++..        +..+. .++.+++..+.+......  ..+. |++|++++|.+++..|..+..+++|+.|+++
T Consensus       159 N~l~~~~p~~--------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          159 NRISGAIPDS--------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             SCCEEECCGG--------GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CcccCcCCHH--------HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            6654 22221        12233 566666666655422111  1133 9999999999998899999999999999999


Q ss_pred             CCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153          155 HNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL  234 (257)
Q Consensus       155 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  234 (257)
                      +|.+++..+. +..+++|+.|++++|++++..|..+..+++|+.|++++|++.+.+|.. ..+++|+.+++++|+++|..
T Consensus       230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            9999965555 788899999999999999899999999999999999999999988886 78999999999999999998


Q ss_pred             CCCCc
Q 048153          235 PLPIC  239 (257)
Q Consensus       235 ~~~~~  239 (257)
                      |...|
T Consensus       308 p~~~C  312 (313)
T 1ogq_A          308 PLPAC  312 (313)
T ss_dssp             TSSCC
T ss_pred             CCCCC
Confidence            87766

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=7.1e-29  Score=198.47  Aligned_cols=235  Identities=17%  Similarity=0.167  Sum_probs=156.5

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC-
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS-   80 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~-   80 (257)
                      ++.+++.+. .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.... +..+....+. 
T Consensus        16 ~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            444444444 233222  24555555555555544444455555555555555555544444333322 3333333332 


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      +..+...       .+..+..++.+++..+.+.....  ...+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        93 l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           93 LRSVDPA-------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CCCCCTT-------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccCHH-------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            2222111       11123344455555554443322  12378899999999999977777899999999999999999


Q ss_pred             ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153          159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI  238 (257)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  238 (257)
                      ++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|+|.|+|+...
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~  245 (285)
T 1ozn_A          166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence            98777789999999999999999998889999999999999999999997766789999999999999999999988643


Q ss_pred             ccCcccccc
Q 048153          239 CRSPVTMLK  247 (257)
Q Consensus       239 ~~~~l~~l~  247 (257)
                      ...+++.+.
T Consensus       246 ~~~~l~~~~  254 (285)
T 1ozn_A          246 LWAWLQKFR  254 (285)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcc
Confidence            333344333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.6e-28  Score=220.99  Aligned_cols=246  Identities=26%  Similarity=0.332  Sum_probs=142.6

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~   80 (257)
                      +|++++|++++..|..++.+++|++|++++|++.+..|..|+.+++|++|++++|.+.+..|..+... .+..+....+.
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            45566666665566666666666666666666665666666666666666666666665555544332 24444444444


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      +.....       ..+.....++.+++..+.+......  ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       478 l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          478 LTGEIP-------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CCSCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             ccCcCC-------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            432111       1122334455555555544422111  2255666666666666666666666666666666666666


Q ss_pred             ccCCCccc----------------------------------------------------------------------cC
Q 048153          159 IGTIPSTF----------------------------------------------------------------------SN  168 (257)
Q Consensus       159 ~~~~~~~~----------------------------------------------------------------------~~  168 (257)
                      ++..|..+                                                                      ..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            54444322                                                                      22


Q ss_pred             ccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCcc-Ccccccc
Q 048153          169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICR-SPVTMLK  247 (257)
Q Consensus       169 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~  247 (257)
                      +++|+.|++++|++++.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+.. +.++.|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            345666666666666666666666666666666666666666666666666666666666666666665533 5666666


Q ss_pred             cccCCcc
Q 048153          248 ASTTNKE  254 (257)
Q Consensus       248 ~~~~~~~  254 (257)
                      +|+|+..
T Consensus       711 ls~N~l~  717 (768)
T 3rgz_A          711 LSNNNLS  717 (768)
T ss_dssp             CCSSEEE
T ss_pred             CcCCccc
Confidence            6666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.3e-27  Score=195.10  Aligned_cols=247  Identities=23%  Similarity=0.257  Sum_probs=160.4

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|++++..+..|+++++|++|++++|.+++..|..|+.+++|++|++++|.++..+...+  ..+..+....+.
T Consensus        55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~  132 (330)
T 1xku_A           55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE  132 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC
T ss_pred             eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc
Confidence            479999999998877789999999999999999998889999999999999999999986544443  345555555555


Q ss_pred             CCCCcchhhhh-------------------hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCC
Q 048153           81 LKPFETSFLVK-------------------NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQ  141 (257)
Q Consensus        81 l~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  141 (257)
                      +..+....+..                   ....+..+..++.+.+..+.+....... .++|++|++++|.+++..+..
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~  211 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAAS  211 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGG
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHH
Confidence            54433221110                   0111223334444444444444322222 356777777777776666666


Q ss_pred             cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh-----
Q 048153          142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ-----  216 (257)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----  216 (257)
                      +..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+..     
T Consensus       212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~  290 (330)
T 1xku_A          212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  290 (330)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence            777777777777777777666666667777777777777776 56666666777777777777776554444432     


Q ss_pred             -ccCCCeeccccCccccc-C-CCCC-ccCcccccccccC
Q 048153          217 -FATFSESSYEGNHFLCG-L-PLPI-CRSPVTMLKASTT  251 (257)
Q Consensus       217 -~~~L~~l~l~~n~~~~~-~-~~~~-~~~~l~~l~~~~~  251 (257)
                       .+.++.+++++|++.+. + |..+ |...++.+++++|
T Consensus       291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence             35666777777776542 1 2222 6677777777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=9.9e-28  Score=190.38  Aligned_cols=204  Identities=22%  Similarity=0.255  Sum_probs=164.6

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      +.+++++++++ .+|..+.  +++++|++++|.+....+..|..+++|++|++++|.++.+.+..+... .+..+....+
T Consensus        19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            35788888888 4665443  678899999999887666788888999999999998887666655433 2444444444


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI  159 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  159 (257)
                      .+..++...                             ...+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus        96 ~l~~~~~~~-----------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           96 KLQALPIGV-----------------------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CCCCCCTTT-----------------------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCHhH-----------------------------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            433322111                             012678999999999999888888999999999999999999


Q ss_pred             cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.+++++|+|.|+|+.
T Consensus       147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            88887899999999999999999977677788999999999999999977677788899999999999999999873

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=9e-28  Score=216.15  Aligned_cols=244  Identities=26%  Similarity=0.325  Sum_probs=177.0

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|++++|++++..|..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+. +..+....+
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  500 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN  500 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence            4789999999988888899999999999999999888888888899999999999998887777665543 566666666


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCC-----------------
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISP-----------------  140 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~-----------------  140 (257)
                      .+......       .+..+..++.+++..+.+.....  ...+++|++|++++|.+.+.+|.                 
T Consensus       501 ~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          501 RLTGEIPK-------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             CCCSCCCG-------GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             ccCCcCCh-------HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            65532111       12233445555555555432211  12255666777766666544443                 


Q ss_pred             -----------------------------------------------------CcCCCCCcCEEeccCCccccCCCcccc
Q 048153          141 -----------------------------------------------------QIGNLTRIQTLNLSHNDLIGTIPSTFS  167 (257)
Q Consensus       141 -----------------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~  167 (257)
                                                                           .+..++.|+.|++++|.+++..|..++
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  653 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG  653 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence                                                                 344456788888888888888888888


Q ss_pred             CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccc
Q 048153          168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLK  247 (257)
Q Consensus       168 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~  247 (257)
                      .++.|+.|++++|++++.+|..++.+++|+.|||++|++.+.+|..++.+++|+.+++++|++.+.+|...-...+....
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~  733 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK  733 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888654333333333


Q ss_pred             cccC
Q 048153          248 ASTT  251 (257)
Q Consensus       248 ~~~~  251 (257)
                      ..+|
T Consensus       734 ~~gN  737 (768)
T 3rgz_A          734 FLNN  737 (768)
T ss_dssp             GCSC
T ss_pred             hcCC
Confidence            3333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-27  Score=194.75  Aligned_cols=248  Identities=20%  Similarity=0.223  Sum_probs=169.0

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+.+..|..|+++++|++|++++|++++..|..|+.+++|++|++++|.++.+++..+  ..+..+....+.
T Consensus        57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~  134 (332)
T 2ft3_A           57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR  134 (332)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC
T ss_pred             eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc
Confidence            579999999998888899999999999999999998888999999999999999999986555444  445566666665


Q ss_pred             CCCCcchhhhhh-------------------hhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCC
Q 048153           81 LKPFETSFLVKN-------------------IYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQ  141 (257)
Q Consensus        81 l~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  141 (257)
                      +..++...+...                   ...+... .++.+++..+.+..... ...++|++|++++|.+++..+..
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~  212 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELED  212 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SSCSSCSCCBCCSSCCCCCCTTS
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cccCCCCEEECCCCcCCccCHHH
Confidence            554433221100                   0000111 33334444443333222 12357778888888877776677


Q ss_pred             cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh-----
Q 048153          142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ-----  216 (257)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----  216 (257)
                      +..+++|++|++++|.+++..+.++..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+..     
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence            788888888888888888777777777788888888888887 66777777888888888888887655555543     


Q ss_pred             -ccCCCeeccccCcccc--cCCCCC-ccCcccccccccCCc
Q 048153          217 -FATFSESSYEGNHFLC--GLPLPI-CRSPVTMLKASTTNK  253 (257)
Q Consensus       217 -~~~L~~l~l~~n~~~~--~~~~~~-~~~~l~~l~~~~~~~  253 (257)
                       .+.|+.+++++|++.+  ..|..+ |...++.++++.|++
T Consensus       292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~  332 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK  332 (332)
T ss_dssp             SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred             ccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence             3567788888888763  222222 667788888777653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.7e-27  Score=202.32  Aligned_cols=228  Identities=19%  Similarity=0.204  Sum_probs=190.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++|+|++|++++..+..|+++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+..+ .+..+....+
T Consensus        78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            579999999999889999999999999999999998888999999999999999999998888777654 4677777777


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN  156 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n  156 (257)
                      .+..++...       +..+..++.+++..+ .+.....  ...+++|++|++++|.+++. | .+..+++|+.|++++|
T Consensus       158 ~l~~~~~~~-------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          158 PIESIPSYA-------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGN  228 (452)
T ss_dssp             CCCEECTTT-------TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTS
T ss_pred             CcceeCHhH-------HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCC
Confidence            776544322       233445555555542 2222221  23378899999999999854 4 5888999999999999


Q ss_pred             ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          157 DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      .+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99998899999999999999999999988888999999999999999999977778888999999999999999999874


Q ss_pred             C
Q 048153          237 P  237 (257)
Q Consensus       237 ~  237 (257)
                      .
T Consensus       309 ~  309 (452)
T 3zyi_A          309 L  309 (452)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.7e-27  Score=200.39  Aligned_cols=228  Identities=20%  Similarity=0.249  Sum_probs=189.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      +.|+|++|++.+..+..|+++++|++|++++|.+....+..|.++++|++|++++|.++...+..+... .+..+....+
T Consensus        67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            479999999998888999999999999999999998888899999999999999999998877766654 4667777777


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN  156 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n  156 (257)
                      .+..+....       +..+..++.+++..+ .+.....  ...+++|++|++++|.++ .+| .+..+++|+.|++++|
T Consensus       147 ~i~~~~~~~-------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          147 PIESIPSYA-------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CCCEECTTT-------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTS
T ss_pred             cccccCHHH-------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCC
Confidence            766544322       223445555665552 2222221  233788999999999998 444 4888999999999999


Q ss_pred             ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          157 DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      .+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99998899999999999999999999988888999999999999999999977778888999999999999999999864


Q ss_pred             C
Q 048153          237 P  237 (257)
Q Consensus       237 ~  237 (257)
                      .
T Consensus       298 ~  298 (440)
T 3zyj_A          298 L  298 (440)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.9e-27  Score=202.10  Aligned_cols=114  Identities=25%  Similarity=0.290  Sum_probs=55.9

Q ss_pred             cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153          122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV  201 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  201 (257)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence            34444444444444444444444455555555555544444444444455555555555554444444444555555555


Q ss_pred             cCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      ++|++.+..+..++.+++|+.+++++|++.|+||
T Consensus       379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            5555554333344445555555555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=4.5e-27  Score=199.73  Aligned_cols=255  Identities=20%  Similarity=0.235  Sum_probs=193.0

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChh--hhCCCCCCeeeccCceecccCCCC-CcC-Cccccccc
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQ--LCRLNQLQLLDLSNNNLHGLIPPC-FDN-TTLHESYS   76 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~-~~l~~~~~   76 (257)
                      ++|+|++|++++..|..|+++++|++|++++|.+++..+..  |..+++|++|++++|.+.+..|.. +.. ..+..+..
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            57899999999888888999999999999999988644544  888889999999999888776654 333 33555555


Q ss_pred             CCCCCCCCcchhhhhh---------------------------hhhhhcccchhhccccccccccc--------------
Q 048153           77 NGSSLKPFETSFLVKN---------------------------IYIYREKKILEIFEFTTKNIAYT--------------  115 (257)
Q Consensus        77 ~~~~l~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~--------------  115 (257)
                      ..+.+.......+...                           .........++.++++.+.+...              
T Consensus       162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L  241 (455)
T 3v47_A          162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI  241 (455)
T ss_dssp             TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred             CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence            5555443322211110                           00001112344444444432210              


Q ss_pred             ---------------------------cccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccC
Q 048153          116 ---------------------------YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSN  168 (257)
Q Consensus       116 ---------------------------~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  168 (257)
                                                 +.+...++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..
T Consensus       242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  321 (455)
T 3v47_A          242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG  321 (455)
T ss_dssp             EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC
Confidence                                       01111357999999999999999999999999999999999999888999999


Q ss_pred             ccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccc
Q 048153          169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLK  247 (257)
Q Consensus       169 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~  247 (257)
                      +++|+.|++++|++++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|.+..-.+..+ -.+.++.|+
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence            9999999999999997778889999999999999999998889999999999999999999876433333 348999999


Q ss_pred             cccCCccc
Q 048153          248 ASTTNKEM  255 (257)
Q Consensus       248 ~~~~~~~~  255 (257)
                      +++|...+
T Consensus       402 l~~N~l~~  409 (455)
T 3v47_A          402 LHTNPWDC  409 (455)
T ss_dssp             CCSSCBCC
T ss_pred             ccCCCccc
Confidence            99997653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.1e-27  Score=191.81  Aligned_cols=225  Identities=18%  Similarity=0.246  Sum_probs=166.6

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++|+|++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.++. .|..+..+ .+..+....+
T Consensus        84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEEEEEE
T ss_pred             eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEECCCC
Confidence            46899999999 67878888999999999999999 788889999999999999999984 44444332 2333333221


Q ss_pred             C-CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153           80 S-LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        80 ~-l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      . ...++.....                   ..  .......+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       161 ~~~~~~p~~~~~-------------------~~--~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          161 PELTELPEPLAS-------------------TD--ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             TTCCCCCSCSEE-------------------EC---CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             CCccccChhHhh-------------------cc--chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence            1 1111110000                   00  0000112677888888888887 6677788888889999988888


Q ss_pred             ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC
Q 048153          159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI  238 (257)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  238 (257)
                      ++ .|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+
T Consensus       219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            84 55568888888889998888887888888888888999998888888888888888888999999888888888777


Q ss_pred             cc-CcccccccccC
Q 048153          239 CR-SPVTMLKASTT  251 (257)
Q Consensus       239 ~~-~~l~~l~~~~~  251 (257)
                      .. +.++.+++..+
T Consensus       298 ~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          298 AQLPANCIILVPPH  311 (328)
T ss_dssp             GGSCTTCEEECCGG
T ss_pred             hhccCceEEeCCHH
Confidence            44 66666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.4e-27  Score=188.96  Aligned_cols=231  Identities=21%  Similarity=0.255  Sum_probs=168.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCccccc--CChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK--VPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~   78 (257)
                      ++|++++|+++...+..|+++++|++|++++|.+...  .+..+..+++|++|++++|.+....+.......+..+....
T Consensus        31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~  110 (306)
T 2z66_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH  110 (306)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred             CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC
Confidence            4788999999866566688999999999999988733  35677788899999999998876544333333455555555


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCcccc-ccCCCcCCCCCcCEEeccC
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSH  155 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~  155 (257)
                      +.+..+...      ..+..+..++.+++..+.+......  ..+++|++|++++|.+.+ ..|..+..+++|++|++++
T Consensus       111 n~l~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          111 SNLKQMSEF------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             SEEESSTTT------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             Ccccccccc------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            554433321      1223345566666666655433222  236788888888888875 5677888888888888888


Q ss_pred             CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-CCCeeccccCcccccC
Q 048153          156 NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-TFSESSYEGNHFLCGL  234 (257)
Q Consensus       156 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~  234 (257)
                      |.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|..+..++ +|+.+++++|++.|+|
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            888877788888888888888888888866666777888888888888888887787777774 8888888888888887


Q ss_pred             CCC
Q 048153          235 PLP  237 (257)
Q Consensus       235 ~~~  237 (257)
                      +..
T Consensus       265 ~~~  267 (306)
T 2z66_A          265 EHQ  267 (306)
T ss_dssp             GGH
T ss_pred             ChH
Confidence            644

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.6e-26  Score=184.01  Aligned_cols=207  Identities=21%  Similarity=0.221  Sum_probs=162.6

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|++++|++++..+..|+++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.... +..+....+
T Consensus        31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence            4688888888877777888888888888888888877777788888888888888888877666554432 333433333


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccc-cCCCcCCCCCcCEEeccCCcc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICH-ISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      .+..+...                             ....+++|++|++++|.+++. +|..+..+++|++|++++|.+
T Consensus       111 ~l~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          111 NLASLENF-----------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CCCCSTTC-----------------------------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CccccCch-----------------------------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            33322110                             012267899999999999864 588999999999999999999


Q ss_pred             ccCCCccccCccCCC----EEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153          159 IGTIPSTFSNLKHIE----SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL  234 (257)
Q Consensus       159 ~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  234 (257)
                      ++..+..+..+..|+    .|++++|++++..+..+. ..+|+.|++++|++.+..+..+..+++|+.+++++|+|.|+|
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            988888888777777    899999999965555443 458999999999999776777889999999999999999999


Q ss_pred             CCC
Q 048153          235 PLP  237 (257)
Q Consensus       235 ~~~  237 (257)
                      |..
T Consensus       241 ~~l  243 (276)
T 2z62_A          241 PRI  243 (276)
T ss_dssp             TTT
T ss_pred             Cch
Confidence            843

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=9.5e-27  Score=198.96  Aligned_cols=236  Identities=20%  Similarity=0.165  Sum_probs=167.3

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|+|++|.+++..|..|+++++|++|++++|++....+..|..+++|++|++++|.+.+..+..+..+. +..+....+
T Consensus        59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence            4688888888877788888888888888888888865556677888888888888888777666554432 344443333


Q ss_pred             CCCCCcchhhhh-----------------hhhhhhcccchhhccccccccccccc-------------------------
Q 048153           80 SLKPFETSFLVK-----------------NIYIYREKKILEIFEFTTKNIAYTYQ-------------------------  117 (257)
Q Consensus        80 ~l~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~-------------------------  117 (257)
                      .+..+....+..                 ....+..+..++.+.+..+.+.....                         
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence            332211100000                 00112222333333333332221110                         


Q ss_pred             -cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCC
Q 048153          118 -GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL  196 (257)
Q Consensus       118 -~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  196 (257)
                       .....+|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus       219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (477)
T 2id5_A          219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL  298 (477)
T ss_dssp             TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred             ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence             0112267788888888875544578889999999999999998888889999999999999999998888899999999


Q ss_pred             CEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          197 AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       197 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +.|++++|++.+..+..+..+++|+.+++++|+|.|+|+.
T Consensus       299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            9999999999977777788899999999999999998764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=6.9e-26  Score=177.84  Aligned_cols=178  Identities=24%  Similarity=0.306  Sum_probs=155.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..            
T Consensus        17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------   81 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD------------   81 (251)
T ss_dssp             TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred             eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc------------
Confidence            36889999998 5665554  68999999999999888888999999999999999998776655543            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              +++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus        82 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  121 (251)
T 3m19_A           82 ----------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS  121 (251)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC
Confidence                                                    6779999999999998877888999999999999999998


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.+++++|+|.|+
T Consensus       122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7777888899999999999999966666788899999999999999977777888899999999999999987

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=4e-26  Score=181.30  Aligned_cols=180  Identities=25%  Similarity=0.278  Sum_probs=143.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.|++++|.+.. .+ .++.+++|++|++++|.+.+  ...+..+++|++|++++|.+++..+..+..            
T Consensus        44 ~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------------  107 (272)
T 3rfs_A           44 DQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDK------------  107 (272)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred             eeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcC------------
Confidence            356777777663 22 36677777777777777764  235667777777777777776555444332            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              +++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus       108 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  147 (272)
T 3rfs_A          108 ----------------------------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS  147 (272)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence                                                    6779999999999987777778999999999999999998


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|++.|.||.
T Consensus       148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            7777888899999999999999976676778899999999999999987777788899999999999999998873

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.1e-25  Score=187.65  Aligned_cols=246  Identities=21%  Similarity=0.229  Sum_probs=147.8

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++|++++|.+.+..+..|+.+++|++|++++|.+.+..|..|+.+++|++|++++|.++..++..+... .+..+....+
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence            356666666665555566666666666666666665555555666666666666666654444433322 2333433333


Q ss_pred             CCCCCcc------------------------hhhhhhhhh---------hhcccchhhccccccccccccccccccccce
Q 048153           80 SLKPFET------------------------SFLVKNIYI---------YREKKILEIFEFTTKNIAYTYQGRVVSYLSG  126 (257)
Q Consensus        80 ~l~~~~~------------------------~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~  126 (257)
                      .+..+..                        .........         ......++.+++..+.+.... ....++|++
T Consensus       152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~  230 (390)
T 3o6n_A          152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTI  230 (390)
T ss_dssp             CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCE
T ss_pred             ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc-ccccccccE
Confidence            3322211                        111000000         000011222333333332221 122456777


Q ss_pred             EEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcc
Q 048153          127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNL  206 (257)
Q Consensus       127 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  206 (257)
                      |++++|.+++.  +.+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ++..+..+++|+.|++++|++
T Consensus       231 L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          231 LKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             EECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc
Confidence            77777777643  467778888888888888887778888888888888888888874 455556778888888888888


Q ss_pred             cCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCc
Q 048153          207 SGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       207 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~  253 (257)
                      . .+|..+..+++|+.|++++|++.. .|.. ..+.++.|++++|.-
T Consensus       308 ~-~~~~~~~~l~~L~~L~L~~N~i~~-~~~~-~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          308 L-HVERNQPQFDRLENLYLDHNSIVT-LKLS-THHTLKNLTLSHNDW  351 (390)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCC-CCCC-TTCCCSEEECCSSCE
T ss_pred             e-ecCccccccCcCCEEECCCCccce-eCch-hhccCCEEEcCCCCc
Confidence            7 667667788888888888888654 3422 446788888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=6.2e-26  Score=199.27  Aligned_cols=252  Identities=17%  Similarity=0.200  Sum_probs=151.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|++++|.+++..|..|+++++|++|++++|++.+..|..|+.+++|++|++++|.+++..|..+..+. +..+....+
T Consensus        36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred             cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence            5789999999988888999999999999999999888888899999999999999999888787776554 555666666


Q ss_pred             CCCCCcchhhhh-----------------hhhhhhcccchhhcccccccccccccc--ccccccc--eEEcccCcccccc
Q 048153           80 SLKPFETSFLVK-----------------NIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLS--GLDLSCNKLICHI  138 (257)
Q Consensus        80 ~l~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~--~L~ls~n~~~~~~  138 (257)
                      .+..+....+..                 ..........++.+++..+.+......  ..+++|+  ++++++|.+.+..
T Consensus       116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~  195 (606)
T 3t6q_A          116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE  195 (606)
T ss_dssp             CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred             CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence            555432221100                 000111123344444444433322111  1234455  5566666555444


Q ss_pred             CCCcCCC---------------------------------------------------CCcCEEeccCCccccCCCcccc
Q 048153          139 SPQIGNL---------------------------------------------------TRIQTLNLSHNDLIGTIPSTFS  167 (257)
Q Consensus       139 ~~~~~~l---------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~  167 (257)
                      |..+...                                                   ..|+.+++++|.+++..+..|.
T Consensus       196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~  275 (606)
T 3t6q_A          196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH  275 (606)
T ss_dssp             TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred             hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence            4332210                                                   0344444555555544455555


Q ss_pred             CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC--ccCcccc
Q 048153          168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI--CRSPVTM  245 (257)
Q Consensus       168 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~  245 (257)
                      .+++|+.|++++|+++ .+|..+..+++|++|++++|.+.+..|..++.+++|+.+++++|.+...+|...  ..+.++.
T Consensus       276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            6666666666666666 555556666666666666666665555566666666666666666555554432  2255555


Q ss_pred             cccccCCc
Q 048153          246 LKASTTNK  253 (257)
Q Consensus       246 l~~~~~~~  253 (257)
                      |++++|..
T Consensus       355 L~l~~n~l  362 (606)
T 3t6q_A          355 LDLSHDDI  362 (606)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            55555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=1.7e-25  Score=179.19  Aligned_cols=200  Identities=22%  Similarity=0.222  Sum_probs=162.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.+++++++++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+. .....+..+....+.
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC
T ss_pred             cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc
Confidence            46888899988 4554443  6889999999999887788899999999999999998865443 222234444444444


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                      +..++..                              ...+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus        89 l~~l~~~------------------------------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           89 LQSLPLL------------------------------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CSSCCCC------------------------------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             CCcCchh------------------------------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence            4322211                              1226789999999999998888889999999999999999998


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      ..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|++. .+|..+...++|+.+++++|+|.|+|.
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            88888899999999999999999666667788999999999999999 778888888999999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=5e-26  Score=183.69  Aligned_cols=238  Identities=21%  Similarity=0.214  Sum_probs=182.2

Q ss_pred             CEEEccccccccc--CCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCC-CCCcC-Cccccccc
Q 048153            1 MILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP-PCFDN-TTLHESYS   76 (257)
Q Consensus         1 ~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~-~~l~~~~~   76 (257)
                      ++|++++|.++..  .+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+++..+ ..+.. ..+..+..
T Consensus        55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  133 (306)
T 2z66_A           55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  133 (306)
T ss_dssp             SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC
Confidence            5789999998843  3567778999999999999998 566678899999999999999987655 33433 33555665


Q ss_pred             CCCCCCCCcchhhhhhhhhhhcccchhhcccccccccc---ccccccccccceEEcccCccccccCCCcCCCCCcCEEec
Q 048153           77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY---TYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNL  153 (257)
Q Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l  153 (257)
                      ..+.+.....       ..+..+..++.+++..+.+..   ......+++|++|++++|.+++..|..+..+++|++|++
T Consensus       134 ~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          134 SHTHTRVAFN-------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             TTSCCEECST-------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcCCccch-------hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            5555443221       122334566667777665543   222334789999999999999888899999999999999


Q ss_pred             cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCC-CCCEEEccCCcccCCCC--hhhhhccCCCeeccccCcc
Q 048153          154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN-TLAVFSVAHNNLSGKIP--EWTAQFATFSESSYEGNHF  230 (257)
Q Consensus       154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~--~~~~~~~~L~~l~l~~n~~  230 (257)
                      ++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|.+....+  .....+...+.+.+..+.+
T Consensus       207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~  286 (306)
T 2z66_A          207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM  286 (306)
T ss_dssp             TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC
T ss_pred             CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc
Confidence            99999988888899999999999999999988888888885 99999999999986533  2233455667777888899


Q ss_pred             cccCCCCCccCccccc
Q 048153          231 LCGLPLPICRSPVTML  246 (257)
Q Consensus       231 ~~~~~~~~~~~~l~~l  246 (257)
                      .|..|...-..++..+
T Consensus       287 ~C~~p~~~~g~~~~~~  302 (306)
T 2z66_A          287 ECATPSDKQGMPVLSL  302 (306)
T ss_dssp             BEEESGGGTTCBGGGC
T ss_pred             ccCCchhhCCceeeee
Confidence            9988887666555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.1e-25  Score=198.66  Aligned_cols=248  Identities=21%  Similarity=0.272  Sum_probs=173.9

Q ss_pred             CEEEcccccccccCCc--cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcC-Cc-cccccc
Q 048153            1 MILDLSYNRLNGSIPD--LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TT-LHESYS   76 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~-l~~~~~   76 (257)
                      ++|++++|+++ .+|.  .++.+++|++|++++|++.+.+| .|+.+++|++|++++|.++. .|..+.. .. +..+..
T Consensus       308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSF  384 (636)
T ss_dssp             CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEEC
T ss_pred             CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEc
Confidence            45777777777 5666  67777777777777777776666 66677777777777777763 3333322 23 455555


Q ss_pred             CCCCCCCCcchhhhhh------------------hhhhh-------cccchhhcccccccccccccc--ccccccceEEc
Q 048153           77 NGSSLKPFETSFLVKN------------------IYIYR-------EKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDL  129 (257)
Q Consensus        77 ~~~~l~~~~~~~~~~~------------------~~~~~-------~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l  129 (257)
                      ..+.+..++.......                  ...+.       ....++.+++..+.+......  ..+++|++|++
T Consensus       385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL  464 (636)
T ss_dssp             CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred             cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence            5555444332211100                  00011       223556666666666543332  22678999999


Q ss_pred             ccCccccccCCCcCCCC-------CcCEEeccCCccccCCCcccc--CccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          130 SCNKLICHISPQIGNLT-------RIQTLNLSHNDLIGTIPSTFS--NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       130 s~n~~~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      ++|.++...+..+....       +|+.|++++|.++ ..|..+.  .+++|+.|++++|++++ +|..+..+++|+.|+
T Consensus       465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG  542 (636)
T ss_dssp             CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred             CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence            99999844444444333       8999999999999 5666665  88999999999999996 788888999999999


Q ss_pred             c------cCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCccc
Q 048153          201 V------AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM  255 (257)
Q Consensus       201 L------~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~  255 (257)
                      +      ++|++.+.+|..+..+++|++|++++|.+ +.+|..++ +.++.|++++|....
T Consensus       543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence            9      56778889999999999999999999998 78888766 899999999996543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=4.6e-25  Score=175.02  Aligned_cols=200  Identities=20%  Similarity=0.234  Sum_probs=160.0

Q ss_pred             ccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCCCCCCcchhhhhhhhhhhccc
Q 048153           22 SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKK  100 (257)
Q Consensus        22 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  100 (257)
                      .+.+.++++++.++ .+|..+.  +++++|++++|.+++..+..+.... +..+....+.+..++...+           
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~-----------   81 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-----------   81 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT-----------
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh-----------
Confidence            45789999999998 5666554  5899999999999887766654432 4444444444433222110           


Q ss_pred             chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153          101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN  180 (257)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  180 (257)
                                        ..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus        82 ------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           82 ------------------KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             ------------------SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ------------------cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence                              12678999999999999877788899999999999999999888888999999999999999


Q ss_pred             cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153          181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK  253 (257)
Q Consensus       181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~  253 (257)
                      ++++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+..-.+..+ ..+.++.|++++|.-
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            9996666678899999999999999997777788899999999999998775333333 347899999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.4e-26  Score=193.84  Aligned_cols=225  Identities=18%  Similarity=0.182  Sum_probs=158.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|+|++|++++..+..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.++...+..+..+. +..+....+
T Consensus        35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence            4677777777776677777777777777777777766677777777777777777777765555443322 333333333


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI  159 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  159 (257)
                      .+.....                             ..-..+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus       115 ~i~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          115 KIVILLD-----------------------------YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CCCEECT-----------------------------TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ccccCCh-----------------------------hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            2221110                             01122677888888888888777778888888888888888888


Q ss_pred             cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC-C
Q 048153          160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP-I  238 (257)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~  238 (257)
                      +..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|.+. .+|.. +
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~  244 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV  244 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHH
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHh
Confidence            776677888888888888888888766667788888888888888877777766656668888888888765 34422 2


Q ss_pred             -ccCcccccccccCCccc
Q 048153          239 -CRSPVTMLKASTTNKEM  255 (257)
Q Consensus       239 -~~~~l~~l~~~~~~~~~  255 (257)
                       ..+.++.|++++|....
T Consensus       245 ~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             TTCTTCCEEECCSSCCCE
T ss_pred             cCccccCeeECCCCcCCc
Confidence             34788888988886543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=6.7e-27  Score=192.51  Aligned_cols=228  Identities=19%  Similarity=0.245  Sum_probs=165.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~~~   79 (257)
                      ++|++++|++++..+..|+++++|++|++++|.+++..+..|+.+++|++|++++|.+++..+..+.. ..+..+....+
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence            46888999988777778888999999999999888777788888889999999999888665543433 34666666666


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccc-ccccc--ccccccccceEEcccCccccccCCCcCCCCCcCEEeccCC
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKN-IAYTY--QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN  156 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n  156 (257)
                      .+..++..      ..+..+..++.+++..+. +....  ....+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus       135 ~l~~l~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          135 PYKTLGET------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             CCSSSCSS------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCcccCch------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            66654431      112234455666666552 33221  1223677888888888888777888888888888888888


Q ss_pred             ccccCCCccccCccCCCEEEccCCccccc-------------------------------CChhhhcCCCCCEEEccCCc
Q 048153          157 DLIGTIPSTFSNLKHIESLDLSYNQLNGK-------------------------------IPLQLVELNTLAVFSVAHNN  205 (257)
Q Consensus       157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------------~~~~~~~~~~L~~L~L~~n~  205 (257)
                      .++......+..+++|+.|++++|++++.                               +|..+..+++|+.|++++|+
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            88754444455677888888888887753                               23446678888999999998


Q ss_pred             ccCCCChh-hhhccCCCeeccccCcccccCC
Q 048153          206 LSGKIPEW-TAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       206 l~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +. .+|.. +..+++|+++++++|++.|+||
T Consensus       289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            88 44544 5788889999999999888886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.5e-25  Score=195.13  Aligned_cols=246  Identities=21%  Similarity=0.222  Sum_probs=149.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++|+|++|.+++..|..|+.+++|++|++++|.+.+..|..|+.+++|++|++++|.+++.++..+..+ .+..+....+
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence            356666666665555566666666666666666665555555666666666666666655544443332 2333443333


Q ss_pred             CCCCCcc------------------------hhhhhhhhh---------hhcccchhhccccccccccccccccccccce
Q 048153           80 SLKPFET------------------------SFLVKNIYI---------YREKKILEIFEFTTKNIAYTYQGRVVSYLSG  126 (257)
Q Consensus        80 ~l~~~~~------------------------~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~  126 (257)
                      .+..+..                        .........         ......++.+++..+.+..... ...++|++
T Consensus       158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~  236 (597)
T 3oja_B          158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTI  236 (597)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC-SCCSCCCE
T ss_pred             cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc-ccCCCCCE
Confidence            3332221                        111100000         0001112222333332222211 22346777


Q ss_pred             EEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcc
Q 048153          127 LDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNL  206 (257)
Q Consensus       127 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  206 (257)
                      |++++|.+++  +.++..+++|+.|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|.+
T Consensus       237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence            7777777764  3567778888888888888888888888888888888888888884 455566778888888888888


Q ss_pred             cCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCc
Q 048153          207 SGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       207 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~  253 (257)
                      . .+|..+..+++|+.|++++|.+.. .|.. ..+.++.|++++|.-
T Consensus       314 ~-~i~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          314 L-HVERNQPQFDRLENLYLDHNSIVT-LKLS-THHTLKNLTLSHNDW  357 (597)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCC-CCCC-TTCCCSEEECCSSCE
T ss_pred             C-ccCcccccCCCCCEEECCCCCCCC-cChh-hcCCCCEEEeeCCCC
Confidence            7 667777788888888888888654 3322 446788888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=4.6e-25  Score=176.33  Aligned_cols=220  Identities=15%  Similarity=0.131  Sum_probs=174.6

Q ss_pred             cEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCCCCCCcchhhhhhhhhhhcccchh
Q 048153           25 SHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSSLKPFETSFLVKNIYIYREKKILE  103 (257)
Q Consensus        25 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  103 (257)
                      +.++++++.++ .+|..+  .+++++|++++|.+++..+..+... .+..+....+.+..+...       .+..+..++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-------AFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-------hcCCccCCC
Confidence            67889999888 456544  4589999999999998887766554 466666666666544322       223445677


Q ss_pred             hccccccc-cccccc--cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153          104 IFEFTTKN-IAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN  180 (257)
Q Consensus       104 ~~~~~~~~-~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  180 (257)
                      .+++..+. +.....  ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus        84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence            77777765 444322  233788999999999999888888999999999999999999888888999999999999999


Q ss_pred             cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCcc
Q 048153          181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~  254 (257)
                      ++++..+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+....+..+ -.+.++.|++++|...
T Consensus       164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            9996666678999999999999999998889999999999999999999876433323 3478999999998653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=6.3e-25  Score=195.33  Aligned_cols=231  Identities=21%  Similarity=0.228  Sum_probs=183.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCC-hhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~   78 (257)
                      +.|++++|++++..|..|+.+++|++|++++|.+.+.+| ..|..+++|++|++++|++.+..+..+.... +..+....
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  463 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR  463 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence            367888889988888889999999999999999986555 6788899999999999998887777665543 55555555


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccC--------CCcCCCCCc
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHIS--------PQIGNLTRI  148 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~--------~~~~~l~~L  148 (257)
                      +.+.....     ....+.....++.+++..+.+......  ..+++|++|++++|.+++..+        ..+..+++|
T Consensus       464 n~l~~~~~-----~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L  538 (680)
T 1ziw_A          464 VALKNVDS-----SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL  538 (680)
T ss_dssp             SCCBCTTC-----SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred             cccccccc-----CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence            54432211     112234455677777777776654432  347889999999999986532        237889999


Q ss_pred             CEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhh-hccCCCeecccc
Q 048153          149 QTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTA-QFATFSESSYEG  227 (257)
Q Consensus       149 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~  227 (257)
                      +.|++++|.++.+.+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+. .+++|+.+++++
T Consensus       539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence            9999999999977777899999999999999999976667788999999999999999987777777 789999999999


Q ss_pred             CcccccCCC
Q 048153          228 NHFLCGLPL  236 (257)
Q Consensus       228 n~~~~~~~~  236 (257)
                      |||.|+|+.
T Consensus       619 N~~~c~c~~  627 (680)
T 1ziw_A          619 NPFDCTCES  627 (680)
T ss_dssp             CCCCBCCCC
T ss_pred             CCcccCCcc
Confidence            999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=2.1e-24  Score=175.95  Aligned_cols=247  Identities=16%  Similarity=0.186  Sum_probs=180.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++++++++.+. .+|..+.  +++++|++++|.+++..+..|+.+++|++|++++|.+++..|..+... .+..+....+
T Consensus        34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            46889999988 5665553  789999999999998777789999999999999999998878777664 4677777777


Q ss_pred             CCCCCcchhhhhh--------------hhhhhcccchhhcccccccccc----ccccccccccceEEcccCccccccCCC
Q 048153           80 SLKPFETSFLVKN--------------IYIYREKKILEIFEFTTKNIAY----TYQGRVVSYLSGLDLSCNKLICHISPQ  141 (257)
Q Consensus        80 ~l~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~L~~L~ls~n~~~~~~~~~  141 (257)
                      .+..++.......              ...+..+..++.+++..+.+..    ......+++|++|++++|.++. +|..
T Consensus       111 ~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~  189 (330)
T 1xku_A          111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG  189 (330)
T ss_dssp             CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS
T ss_pred             cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcc
Confidence            7765544332110              1112333445555555554432    1112235678888888887774 3443


Q ss_pred             cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCC
Q 048153          142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS  221 (257)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  221 (257)
                      +.  ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++. .+|..+..+++|+
T Consensus       190 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~  266 (330)
T 1xku_A          190 LP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  266 (330)
T ss_dssp             CC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             cc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence            33  67888888888888777888888889999999999988776777888899999999999888 7777788889999


Q ss_pred             eeccccCcccccCCCCCcc-------CcccccccccCCcc
Q 048153          222 ESSYEGNHFLCGLPLPICR-------SPVTMLKASTTNKE  254 (257)
Q Consensus       222 ~l~l~~n~~~~~~~~~~~~-------~~l~~l~~~~~~~~  254 (257)
                      ++++++|++..-.+..+|.       ..++.+++++|...
T Consensus       267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            9999999877644444442       56777888887654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.6e-25  Score=180.36  Aligned_cols=207  Identities=18%  Similarity=0.207  Sum_probs=170.0

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.+..|..+........      
T Consensus       107 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~------  178 (328)
T 4fcg_A          107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE------  178 (328)
T ss_dssp             SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC------
T ss_pred             CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh------
Confidence            57999999999 88999999999999999999999 78889999999999999998877777765543111000      


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccc-cccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ-GRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI  159 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  159 (257)
                                     +..+..++.+++..+.+..... ...+++|++|++++|.+++ +|..+..+++|++|++++|.+.
T Consensus       179 ---------------~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          179 ---------------HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             ---------------EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC
T ss_pred             ---------------hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch
Confidence                           1122234444444444332211 1237789999999999995 5667999999999999999999


Q ss_pred             cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153          160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  231 (257)
                      +..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..++++++|+.+++..+.+.
T Consensus       243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            899999999999999999999998899999999999999999999999999999999999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.5e-25  Score=191.21  Aligned_cols=80  Identities=24%  Similarity=0.209  Sum_probs=55.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+.+..|..|+++++|++|++++|++++..|..|+.+++|++|++++|.++.+++.  ....+..+....+.
T Consensus        24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA  101 (520)
T ss_dssp             SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred             cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence            4678888888766667788888888888888888777777788888888888888877754443  33334444444444


Q ss_pred             CC
Q 048153           81 LK   82 (257)
Q Consensus        81 l~   82 (257)
                      +.
T Consensus       102 l~  103 (520)
T 2z7x_B          102 FD  103 (520)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=9.3e-26  Score=199.04  Aligned_cols=244  Identities=16%  Similarity=0.169  Sum_probs=133.9

Q ss_pred             CEEEccccccccc-----------------CCcccc--CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCce-ecc
Q 048153            1 MILDLSYNRLNGS-----------------IPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN-LHG   60 (257)
Q Consensus         1 ~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~   60 (257)
                      ++|+|++|.+++.                 +|+.++  ++++|++|++++|.+.+.+|..|+.+++|++|++++|. +++
T Consensus       209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~  288 (636)
T 4eco_A          209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG  288 (636)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence            5789999999975                 888888  99999999999999888889899999999999999998 876


Q ss_pred             -cCCCCCcC-------CcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccc-cccccccccccceEEccc
Q 048153           61 -LIPPCFDN-------TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIA-YTYQGRVVSYLSGLDLSC  131 (257)
Q Consensus        61 -~~~~~~~~-------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~ls~  131 (257)
                       ..|..+..       ..+..+....+.+..++...      .+..+..++.+++..+.+. .......+++|++|++++
T Consensus       289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~------~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET------SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY  362 (636)
T ss_dssp             HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH------HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred             ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh------hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence             55554433       34566666666665443300      1112233344444444333 111112234444445544


Q ss_pred             CccccccCCCcCCCCC--------------------------cCEEeccCCccccCCCcccc-------CccCCCEEEcc
Q 048153          132 NKLICHISPQIGNLTR--------------------------IQTLNLSHNDLIGTIPSTFS-------NLKHIESLDLS  178 (257)
Q Consensus       132 n~~~~~~~~~~~~l~~--------------------------L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~  178 (257)
                      |.++ .+|..+..+++                          |+.|++++|.+++..|..+.       .+++|+.|+++
T Consensus       363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          363 NQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             SEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             Cccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence            4444 33444444444                          45555555544444444444       34455555555


Q ss_pred             CCcccccCChhhhcCCCCCEEEccCCcccCCCChhh-hhc-------cCCCeeccccCcccccCCCCCc---cCcccccc
Q 048153          179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWT-AQF-------ATFSESSYEGNHFLCGLPLPIC---RSPVTMLK  247 (257)
Q Consensus       179 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~-------~~L~~l~l~~n~~~~~~~~~~~---~~~l~~l~  247 (257)
                      +|+++...+..+..+++|+.|++++|++. .+|... ...       ++|+.|++++|.+. .+|..+.   .+.++.|+
T Consensus       442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~  519 (636)
T 4eco_A          442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID  519 (636)
T ss_dssp             SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred             CCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence            55555222222333455555555555555 333221 111       15555555555544 3443332   24555555


Q ss_pred             cccCCc
Q 048153          248 ASTTNK  253 (257)
Q Consensus       248 ~~~~~~  253 (257)
                      +++|..
T Consensus       520 Ls~N~l  525 (636)
T 4eco_A          520 LSYNSF  525 (636)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2e-25  Score=190.97  Aligned_cols=215  Identities=21%  Similarity=0.192  Sum_probs=150.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|+|++|.+++..|..|+.+++|++|++++|.+.+..|  |..+++|++|++++|.+++..+.    ..+..+....+.
T Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~  110 (487)
T 3oja_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN  110 (487)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC
T ss_pred             cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCc
Confidence            479999999998888899999999999999999986555  88999999999999999876543    345556666666


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCcC-CCCCcCEEeccCCc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIG-NLTRIQTLNLSHND  157 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~-~l~~L~~L~l~~n~  157 (257)
                      +..+....          +..++.+++..+.+......  ..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus       111 l~~~~~~~----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          111 ISRVSCSR----------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CCCEEECC----------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CCCCCccc----------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            65544321          23455555555554443222  2256777777777777766666664 57777777777777


Q ss_pred             cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +++..+  ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.+++++|++.|.++
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             cccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence            775422  2346777777777777774 34446677777777777777773 56566677777777777777776443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=2.3e-24  Score=175.98  Aligned_cols=247  Identities=17%  Similarity=0.139  Sum_probs=177.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++++++++.+. .+|..+  .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+... .+..+....+
T Consensus        36 ~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             CEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            46889999998 566555  3799999999999998888899999999999999999998877776654 4677777777


Q ss_pred             CCCCCcchhhhhh--------------hhhhhcccchhhcccccccccc---ccccccccccceEEcccCccccccCCCc
Q 048153           80 SLKPFETSFLVKN--------------IYIYREKKILEIFEFTTKNIAY---TYQGRVVSYLSGLDLSCNKLICHISPQI  142 (257)
Q Consensus        80 ~l~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~L~~L~ls~n~~~~~~~~~~  142 (257)
                      .+..++.......              ...+..+..++.+++..+.+..   ........+|++|++++|.+++ +|..+
T Consensus       113 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~  191 (332)
T 2ft3_A          113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL  191 (332)
T ss_dssp             CCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSS
T ss_pred             cCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccc
Confidence            7766554332100              0112223333344444333321   0000000145555566555553 33322


Q ss_pred             CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153          143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSE  222 (257)
Q Consensus       143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  222 (257)
                      .  ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++. .+|..+..+++|+.
T Consensus       192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV  268 (332)
T ss_dssp             C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred             c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence            2  57888889999988888888999999999999999999777778899999999999999998 78888899999999


Q ss_pred             eccccCcccccCCCCCcc-------CcccccccccCCcc
Q 048153          223 SSYEGNHFLCGLPLPICR-------SPVTMLKASTTNKE  254 (257)
Q Consensus       223 l~l~~n~~~~~~~~~~~~-------~~l~~l~~~~~~~~  254 (257)
                      +++++|++....+..++.       ..++.+++++|...
T Consensus       269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             EECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            999999987654444443       45788999888754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=1.3e-24  Score=190.86  Aligned_cols=252  Identities=19%  Similarity=0.196  Sum_probs=156.6

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~   80 (257)
                      .|++++|.+++..+..|+.+++|++|++++|.++ .+|..++.+++|++|++++|.+.+..+..+.... +..+....+.
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence            5777888888777777888888888888888877 5666777788888888888877766554443322 3333333332


Q ss_pred             CC-CCcchhhh----------------hh---hhhhhcccchhhcccccccccccccc--ccccccceEEcccCcccccc
Q 048153           81 LK-PFETSFLV----------------KN---IYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHI  138 (257)
Q Consensus        81 l~-~~~~~~~~----------------~~---~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~  138 (257)
                      +. .++...+.                ..   ...+..+..++.+++..+.+......  ..+++|++|++++|.+.+..
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred             cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence            21 11100000                00   11223334455555555544333211  22566777777777766554


Q ss_pred             CC-CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc---CChhhhcCCCCCEEEccCCcccCCCChhh
Q 048153          139 SP-QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK---IPLQLVELNTLAVFSVAHNNLSGKIPEWT  214 (257)
Q Consensus       139 ~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  214 (257)
                      +. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.   .+..+..+++|+.|++++|++.+..|..+
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            43 366777777777777777766677777777777777777777642   22456677777777777777776667777


Q ss_pred             hhccCCCeeccccCcccccCCCCCcc-CcccccccccCCccc
Q 048153          215 AQFATFSESSYEGNHFLCGLPLPICR-SPVTMLKASTTNKEM  255 (257)
Q Consensus       215 ~~~~~L~~l~l~~n~~~~~~~~~~~~-~~l~~l~~~~~~~~~  255 (257)
                      ..+++|++|++++|.+.+..|..+.. ..+ .|++++|....
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            77777777777777777666655533 555 77777776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1e-24  Score=189.93  Aligned_cols=81  Identities=22%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+.+..|..|+++++|++|++++|++++..|..|+.+++|++|++++|.++.+++.  ....+..+....+.
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND  132 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC
Confidence            4688888888877777888888889999988888877788888888888888888888765443  33344555555554


Q ss_pred             CCC
Q 048153           81 LKP   83 (257)
Q Consensus        81 l~~   83 (257)
                      +..
T Consensus       133 l~~  135 (562)
T 3a79_B          133 FDV  135 (562)
T ss_dssp             CSB
T ss_pred             ccc
Confidence            443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=1.3e-24  Score=196.04  Aligned_cols=246  Identities=19%  Similarity=0.228  Sum_probs=169.3

Q ss_pred             CEEEcccccccccCCc--cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCc-CCc-cccccc
Q 048153            1 MILDLSYNRLNGSIPD--LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFD-NTT-LHESYS   76 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~-l~~~~~   76 (257)
                      ++|+|++|+++ .+|.  .|+.+++|++|++++|.+. .+| .|+.+++|++|++++|.++ ..|..+. ... +..+..
T Consensus       551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred             cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence            35666666666 5565  6666667777777766666 455 5666666666666666666 3333232 223 445555


Q ss_pred             CCCCCCCCcchhhhhhh-----------------h----hhh--cccchhhcccccccccccccc--ccccccceEEccc
Q 048153           77 NGSSLKPFETSFLVKNI-----------------Y----IYR--EKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSC  131 (257)
Q Consensus        77 ~~~~l~~~~~~~~~~~~-----------------~----~~~--~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~  131 (257)
                      ..+.+..++........                 .    ...  ....++.+++..+.+......  ..+++|++|++++
T Consensus       627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred             cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence            55554443322111000                 0    000  112455566666655533222  1367899999999


Q ss_pred             CccccccCCCcCCC-------CCcCEEeccCCccccCCCcccc--CccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153          132 NKLICHISPQIGNL-------TRIQTLNLSHNDLIGTIPSTFS--NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA  202 (257)
Q Consensus       132 n~~~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  202 (257)
                      |.++...+..+...       ++|+.|++++|.++ ..|..+.  .+++|+.|++++|++++ +|..+..+++|+.|+++
T Consensus       707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             CcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence            99984433334332       38999999999999 5677776  88999999999999996 78888899999999997


Q ss_pred             C------CcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          203 H------NNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       203 ~------n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      +      |++.+.+|..+..+++|+.|++++|.+ ..+|..++ +.|+.|++++|...
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPNI  840 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTTC
T ss_pred             CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCCC
Confidence            6      788889999999999999999999998 88998866 69999999999764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.5e-25  Score=180.53  Aligned_cols=214  Identities=21%  Similarity=0.200  Sum_probs=131.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|++++..|..|+.+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+.    ..+..+....+.
T Consensus        37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l~~n~  110 (317)
T 3o53_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNN  110 (317)
T ss_dssp             SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSC
T ss_pred             CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCC----CCcCEEECCCCc
Confidence            468888888887767778888888888888888875443  77888888888888888765432    334444445555


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCc-CCCCCcCEEeccCCc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQI-GNLTRIQTLNLSHND  157 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~-~~l~~L~~L~l~~n~  157 (257)
                      +..+....          +..++.+++..+.+......  ..+++|++|++++|.+++..+..+ ..+++|++|++++|.
T Consensus       111 l~~~~~~~----------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          111 ISRVSCSR----------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             CSEEEECC----------CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             cCCcCccc----------cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            44333211          23344455555544433221  225566666777666665555444 356666777777766


Q ss_pred             cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccC
Q 048153          158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGL  234 (257)
Q Consensus       158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  234 (257)
                      +++...  ...+++|+.|++++|++++ ++..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++.|++
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             Cccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence            664422  2235666777777776663 3444666666777777777666 44555666666777777777666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=3.9e-24  Score=178.31  Aligned_cols=242  Identities=20%  Similarity=0.244  Sum_probs=153.2

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|++++|.+....+..|+.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.... +..+....+
T Consensus        48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  127 (390)
T 3o6n_A           48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  127 (390)
T ss_dssp             SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence            5789999999977667789999999999999999988888999999999999999999988888765544 667777777


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccccCCCcCCC------------
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICHISPQIGNL------------  145 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~l------------  145 (257)
                      .+..++...       +..+..++.+++..+.+.....  ...+++|++|++++|.+++.....+..+            
T Consensus       128 ~l~~l~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          128 DLSSLPRGI-------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCCCCCTTT-------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             ccCcCCHHH-------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence            776554432       2344556666776666554432  2336789999999988875432222211            


Q ss_pred             -------------------------CCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          146 -------------------------TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       146 -------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                                               ++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus       201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence                                     1233333333333321  2344555555556665555554455555555666666


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK  253 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~  253 (257)
                      +++|++.+ +|.....+++|++|++++|++. .+|..+ ..+.++.|++++|..
T Consensus       279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence            66665552 3333344555666666666544 233222 225556666655543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.1e-24  Score=191.44  Aligned_cols=207  Identities=21%  Similarity=0.151  Sum_probs=170.1

Q ss_pred             CEEEccccccccc--CCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCC-CCCcCC-ccccccc
Q 048153            1 MILDLSYNRLNGS--IPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIP-PCFDNT-TLHESYS   76 (257)
Q Consensus         1 ~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~-~l~~~~~   76 (257)
                      ++|++++|.+++.  .|..+..+++|++|++++|.+.+ .|..+..+++|++|++++|.+.+..+ ..+... .+..+..
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  431 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI  431 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence            5799999999966  48889999999999999999984 56789999999999999999987766 344332 2333333


Q ss_pred             CCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccc-ccCCCcCCCCCcCEEeccC
Q 048153           77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSH  155 (257)
Q Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~  155 (257)
                      ..+.+.....                             .....+++|++|++++|.+.+ ..|..+..+++|+.|++++
T Consensus       432 ~~n~l~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          432 SYTNTKIDFD-----------------------------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             TTSCCEECCT-----------------------------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             cCCCCCccch-----------------------------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence            3333221110                             011226789999999999987 4788999999999999999


Q ss_pred             CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-CCCeeccccCcccccC
Q 048153          156 NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-TFSESSYEGNHFLCGL  234 (257)
Q Consensus       156 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~  234 (257)
                      |.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|+|.|+|
T Consensus       483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence            9999888999999999999999999999888999999999999999999999 6676688887 5999999999999999


Q ss_pred             CCCC
Q 048153          235 PLPI  238 (257)
Q Consensus       235 ~~~~  238 (257)
                      +...
T Consensus       562 ~~~~  565 (606)
T 3vq2_A          562 EHQK  565 (606)
T ss_dssp             TTHH
T ss_pred             ccHH
Confidence            8643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-24  Score=187.85  Aligned_cols=242  Identities=19%  Similarity=0.248  Sum_probs=161.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      +++++++|.+....+..|+.+++|++|++++|.+.+..|..|+.+++|++|++++|.+++.++..+..+. +..+....+
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  133 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  133 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence            4689999999987777889999999999999999988888999999999999999999998888766544 667777777


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccccccCCCcCCC------------
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNL------------  145 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l------------  145 (257)
                      .+..++...       +..+..|+.+++..+.+......  ..+++|++|++++|.+++.....+..+            
T Consensus       134 ~l~~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          134 DLSSLPRGI-------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCCCCCTTT-------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCCCHHH-------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence            776554432       23445566667776665544332  336788888888888775432222221            


Q ss_pred             -------------------------CCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          146 -------------------------TRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       146 -------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                                               ++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus       207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence                                     123344444444442  24455566666666666666665566666666666666


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNK  253 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~  253 (257)
                      +++|.+.+ +|..+..+++|+.|++++|.+. .+|..+ ..+.|+.|++++|..
T Consensus       285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence            66666663 3444455666666666666655 344333 336666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=6.8e-25  Score=170.95  Aligned_cols=194  Identities=15%  Similarity=0.144  Sum_probs=139.6

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCc-ccccCChhhhCCCCCCeeeccC-ceecccCCCCCcCCcccccccCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNN-LEGKVPVQLCRLNQLQLLDLSN-NNLHGLIPPCFDNTTLHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~~~~~~   78 (257)
                      ++|++++|++++..+..|+++++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..+..          
T Consensus        34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~----------  103 (239)
T 2xwt_C           34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE----------  103 (239)
T ss_dssp             CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC----------
T ss_pred             cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC----------
Confidence            357777777776666677777777777777775 6655555677777777777776 7776655444432          


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcC---EEeccC
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQ---TLNLSH  155 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~---~L~l~~  155 (257)
                                                                +++|++|++++|.+++ +|. +..+++|+   .|++++
T Consensus       104 ------------------------------------------l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~  139 (239)
T 2xwt_C          104 ------------------------------------------LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITD  139 (239)
T ss_dssp             ------------------------------------------CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEES
T ss_pred             ------------------------------------------CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCC
Confidence                                                      5678888888888875 454 77777777   888888


Q ss_pred             C-ccccCCCccccCccCCC-EEEccCCcccccCChhhhcCCCCCEEEccCCc-ccCCCChhhhhc-cCCCeeccccCccc
Q 048153          156 N-DLIGTIPSTFSNLKHIE-SLDLSYNQLNGKIPLQLVELNTLAVFSVAHNN-LSGKIPEWTAQF-ATFSESSYEGNHFL  231 (257)
Q Consensus       156 n-~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~l~l~~n~~~  231 (257)
                      | .++++.+..|..+++|+ .|++++|+++...+..+.. ++|+.|++++|+ +.+..+..+..+ ++|+.+++++|++.
T Consensus       140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            8 78877777788888888 8888888887433334444 788888888884 776666777777 88888888888865


Q ss_pred             ccCCCCCccCcccccccccC
Q 048153          232 CGLPLPICRSPVTMLKASTT  251 (257)
Q Consensus       232 ~~~~~~~~~~~l~~l~~~~~  251 (257)
                      . +|.. ....++.|+++++
T Consensus       219 ~-l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          219 A-LPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             C-CCCT-TCTTCSEEECTTC
T ss_pred             c-CChh-HhccCceeeccCc
Confidence            3 5544 5677777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.7e-23  Score=177.63  Aligned_cols=241  Identities=18%  Similarity=0.127  Sum_probs=194.2

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~   80 (257)
                      .++.+++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+... .+..+....+.
T Consensus        58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            4566677777 4665443  689999999999998889999999999999999999999888877654 47777777777


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEccc-CccccccCCCcCCCCCcCEEeccCCc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSC-NKLICHISPQIGNLTRIQTLNLSHND  157 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~  157 (257)
                      +..++...       +..+..|+.+++..+.+.....  ...+++|++|++++ +.+....+..|..+++|+.|++++|.
T Consensus       135 l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          135 LTVIPSGA-------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             CSBCCTTT-------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCccChhh-------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            77655432       2345567777777777665433  23478899999998 45555555679999999999999999


Q ss_pred             cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153          158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP  237 (257)
Q Consensus       158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  237 (257)
                      +++. | .+..+++|+.|++++|++++..|..+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+..-.+..
T Consensus       208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          208 IKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             cccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            9954 3 5778899999999999999888899999999999999999999888999999999999999999987543343


Q ss_pred             C-ccCcccccccccCCcc
Q 048153          238 I-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       238 ~-~~~~l~~l~~~~~~~~  254 (257)
                      + ....++.|++++|.-.
T Consensus       286 ~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             STTCTTCCEEECCSSCEE
T ss_pred             hccccCCCEEEccCCCcC
Confidence            3 3478999999998743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=9.3e-24  Score=173.25  Aligned_cols=243  Identities=18%  Similarity=0.195  Sum_probs=170.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|......+.......+..+....+.
T Consensus        91 ~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A           91 TNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK  166 (347)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC
Confidence            468888888885 33 588888888888888888743 33 777788888888877543333322222223333333333


Q ss_pred             CCCCcchhhhh-------------hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC
Q 048153           81 LKPFETSFLVK-------------NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR  147 (257)
Q Consensus        81 l~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~  147 (257)
                      +..........             ..........++.+.+..+.+........+++|++|++++|.++...+  +..+++
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~  244 (347)
T 4fmz_A          167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQ  244 (347)
T ss_dssp             CCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             cCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCC
Confidence            32222100000             001133344555566666555544444557889999999999885543  888999


Q ss_pred             cCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecccc
Q 048153          148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEG  227 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~  227 (257)
                      |++|++++|.+++.  +.+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+.+..+..++.+++|+.+++++
T Consensus       245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred             CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence            99999999999854  5688889999999999999853  4578899999999999999988888899999999999999


Q ss_pred             CcccccCCCCCccCcccccccccCCcc
Q 048153          228 NHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       228 n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      |++.+..| ....+.++.|++++|..+
T Consensus       321 n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          321 NHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             CccccccC-hhhhhccceeehhhhccc
Confidence            99887666 335589999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=2e-24  Score=189.71  Aligned_cols=223  Identities=22%  Similarity=0.137  Sum_probs=180.2

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCccccc--CChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK--VPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSN   77 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~   77 (257)
                      +.|++++|+..+..  .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.+.+ ..+.. ..+..+...
T Consensus       331 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          331 KSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQ  407 (606)
T ss_dssp             CEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECT
T ss_pred             ceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECC
Confidence            57899999665444  578999999999999999865  3888999999999999999998754 33332 223333333


Q ss_pred             CCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCc
Q 048153           78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND  157 (257)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~  157 (257)
                      .+.+.....                            ......+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       408 ~n~l~~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          408 HSTLKRVTE----------------------------FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             TSEEESTTT----------------------------TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             CCccCCccC----------------------------hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence            322221110                            0111236889999999999998889999999999999999999


Q ss_pred             ccc-CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          158 LIG-TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       158 l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +++ ..|..+..+++|+.|++++|++++..|..+.++++|++|++++|++.+..|..+..+++|++|++++|.+. .+|.
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            997 47889999999999999999999888889999999999999999999888999999999999999999977 5777


Q ss_pred             CCcc--CcccccccccCCccc
Q 048153          237 PICR--SPVTMLKASTTNKEM  255 (257)
Q Consensus       237 ~~~~--~~l~~l~~~~~~~~~  255 (257)
                      .+..  ..++.+++++|...+
T Consensus       539 ~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CGGGSCTTCCEEECCSCCCCC
T ss_pred             hHhhhcccCcEEEccCCCccc
Confidence            6643  359999999987653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=8.1e-24  Score=167.98  Aligned_cols=179  Identities=25%  Similarity=0.219  Sum_probs=157.8

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+.+.  ..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..            
T Consensus        66 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------  131 (272)
T 3rfs_A           66 RYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK------------  131 (272)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred             cEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc------------
Confidence            5799999999963  47999999999999999999877778899999999999999998766655443            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              +++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus       132 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A          132 ----------------------------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence                                                    6779999999999998878788999999999999999998


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCcc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICR  240 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  240 (257)
                      ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+.       +++|+.+++..|.+.+.+|..++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence            8888889999999999999999987777789999999999999988754       557888999999999988887744

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=9.5e-25  Score=176.71  Aligned_cols=222  Identities=21%  Similarity=0.182  Sum_probs=111.4

Q ss_pred             EEEccccccc-ccCCcccc-------CcccCcEeeCcCCcccccCChhh--hCCCCCCeeeccCceecccCCCCCcCCcc
Q 048153            2 ILDLSYNRLN-GSIPDLVD-------GLSQLSHLILAHNNLEGKVPVQL--CRLNQLQLLDLSNNNLHGLIPPCFDNTTL   71 (257)
Q Consensus         2 ~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l   71 (257)
                      +|+|++|.+. ...|..+.       ++++|++|++++|++++..|..+  ..+++|++|++++|.+++. |..+.....
T Consensus        67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~  145 (312)
T 1wwl_A           67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ  145 (312)
T ss_dssp             HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT
T ss_pred             hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH
Confidence            3566666663 33444333       56667777777776666566554  5666677777777666654 322211100


Q ss_pred             cccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccCccccc--cCCC--cCCC
Q 048153           72 HESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCNKLICH--ISPQ--IGNL  145 (257)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n~~~~~--~~~~--~~~l  145 (257)
                                               .....++.+++..+.+.....  -..+++|++|++++|.+.+.  .+..  +..+
T Consensus       146 -------------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          146 -------------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             -------------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             -------------------------hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence                                     000111222222222211110  01145566666666664432  1112  2556


Q ss_pred             CCcCEEeccCCcccc---CCCccccCccCCCEEEccCCcccccCC-hhhhcCCCCCEEEccCCcccCCCChhhhhccCCC
Q 048153          146 TRIQTLNLSHNDLIG---TIPSTFSNLKHIESLDLSYNQLNGKIP-LQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFS  221 (257)
Q Consensus       146 ~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  221 (257)
                      ++|++|++++|.+++   .....+..+++|+.|++++|++++..| ..+..+++|++|++++|++. .+|..+.  ++|+
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~  277 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS  277 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence            666666666666652   112223445566666666666664442 23344566666666666666 4454443  5666


Q ss_pred             eeccccCcccccCCCCCccCcccccccccCCc
Q 048153          222 ESSYEGNHFLCGLPLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       222 ~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~  253 (257)
                      .|++++|.+... |...-.+.++.|++++|..
T Consensus       278 ~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          278 VLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             EEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred             EEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence            666666665443 4422335666666666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.8e-23  Score=165.18  Aligned_cols=218  Identities=21%  Similarity=0.233  Sum_probs=159.4

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSSL   81 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~l   81 (257)
                      .+..+.++. .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.... +..+....+.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            445555555 4565443  5799999999999987777899999999999999999887776655432 33444433333


Q ss_pred             CCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153           82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT  161 (257)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  161 (257)
                      ..+...                             ....+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus        89 ~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  139 (276)
T 2z62_A           89 QSLALG-----------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  139 (276)
T ss_dssp             CEECTT-----------------------------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CccChh-----------------------------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence            222110                             012267788999999988877666788889999999999988864


Q ss_pred             -CCccccCccCCCEEEccCCcccccCChhhhcCCCCC----EEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          162 -IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLA----VFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       162 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                       .|..+..+++|+.|++++|++++..+..+..+++|+    .|++++|.+.+..+..+ ...+|++|++++|.+.. +|.
T Consensus       140 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~  217 (276)
T 2z62_A          140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKS-VPD  217 (276)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSC-CCT
T ss_pred             cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceee-cCH
Confidence             478888889999999999998876666776666666    88999999885555444 34589999999998665 444


Q ss_pred             C-C-ccCcccccccccCCcc
Q 048153          237 P-I-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       237 ~-~-~~~~l~~l~~~~~~~~  254 (257)
                      . + ..+.++.|++++|...
T Consensus       218 ~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          218 GIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TTTTTCCSCCEEECCSSCBC
T ss_pred             hHhcccccccEEEccCCccc
Confidence            3 3 3478899999987654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.5e-23  Score=164.43  Aligned_cols=157  Identities=28%  Similarity=0.311  Sum_probs=142.8

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.|++++|++.+..+..|+++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..            
T Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------  105 (251)
T 3m19_A           38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH------------  105 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred             CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc------------
Confidence            57999999999888889999999999999999999888888999999999999999998766655443            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              +++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus       106 ----------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A          106 ----------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence                                                    6779999999999997777788999999999999999998


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCC
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGK  209 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  209 (257)
                      +.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+...
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8888899999999999999999977777889999999999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.4e-23  Score=175.26  Aligned_cols=240  Identities=17%  Similarity=0.138  Sum_probs=193.2

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~   80 (257)
                      .++.+++.+. .+|..+.  ++++.|++++|.+....+..|..+++|++|++++|.++.+.+..+... .+..+....+.
T Consensus        47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4566777777 5665554  789999999999998888999999999999999999998877776654 46777777777


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccc--cccccccceEEcccC-ccccccCCCcCCCCCcCEEeccCCc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ--GRVVSYLSGLDLSCN-KLICHISPQIGNLTRIQTLNLSHND  157 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~n~  157 (257)
                      +..++...       +..+..|+.+++..+.+.....  ...+++|++|++++| .+....+..|..+++|++|++++|.
T Consensus       124 l~~~~~~~-------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          124 LTTIPNGA-------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             CSSCCTTT-------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             CCeeCHhH-------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            77655422       2345667777777776665433  233788999999994 4555555689999999999999999


Q ss_pred             cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153          158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP  237 (257)
Q Consensus       158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  237 (257)
                      ++. .| .+..+++|+.|++++|++++..+..+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+....+..
T Consensus       197 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          197 LRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             CSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             Ccc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            994 44 4788899999999999999888899999999999999999999888889999999999999999987644444


Q ss_pred             C-ccCcccccccccCCc
Q 048153          238 I-CRSPVTMLKASTTNK  253 (257)
Q Consensus       238 ~-~~~~l~~l~~~~~~~  253 (257)
                      + -...++.|++++|.-
T Consensus       275 ~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          275 FTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TSSCTTCCEEECCSSCE
T ss_pred             hccccCCCEEEcCCCCc
Confidence            3 348899999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=190.88  Aligned_cols=127  Identities=19%  Similarity=0.211  Sum_probs=96.3

Q ss_pred             cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153          122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV  201 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  201 (257)
                      ++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+.+|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            56888888888887777778888888888888888888777778888888888888888887666777888888888888


Q ss_pred             cCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153          202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN  252 (257)
Q Consensus       202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~  252 (257)
                      ++|++.+..+..+..+++|+.|++++|.+.. ++.   .++++.+++++|.
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N~  392 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGNK  392 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS---CCSCSEEEEESCC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC---CCCcchhccCCCC
Confidence            8888876666677778888888888887653 221   3344445444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=175.06  Aligned_cols=242  Identities=17%  Similarity=0.164  Sum_probs=194.4

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~   80 (257)
                      +.+.+++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+... .+..+....+.
T Consensus        35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            3578888888 5665554  589999999999997777789999999999999999998888777654 47777777787


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccc---cccccccceEEcccC-ccccccCCCcCCCCCcCEEeccCC
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ---GRVVSYLSGLDLSCN-KLICHISPQIGNLTRIQTLNLSHN  156 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~n  156 (257)
                      +..++...       +..+..++.+++..+.+.....   ...+++|++|++++| .+....+..+..+++|++|++++|
T Consensus       112 l~~~~~~~-------~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          112 LSNLSSSW-------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             CSSCCHHH-------HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             CCcCCHhH-------hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            77655432       2345567777777776655433   344789999999999 477677788999999999999999


Q ss_pred             ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC--------------------------
Q 048153          157 DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI--------------------------  210 (257)
Q Consensus       157 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--------------------------  210 (257)
                      .+++..+..+..+++|+.|++++|+++......+..+++|+.|++++|.+.+..                          
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            999888999999999999999999997443334566899999999999998643                          


Q ss_pred             -----ChhhhhccCCCeeccccCcccccCCCCC--ccCcccccccccCCcc
Q 048153          211 -----PEWTAQFATFSESSYEGNHFLCGLPLPI--CRSPVTMLKASTTNKE  254 (257)
Q Consensus       211 -----~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~l~~~~~~~~  254 (257)
                           |..+..+++|++|++++|.+. .+|...  -.+.++.|++++|...
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence                 345677899999999999977 677764  3488999999999754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=4e-23  Score=181.96  Aligned_cols=100  Identities=20%  Similarity=0.288  Sum_probs=63.5

Q ss_pred             ccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh
Q 048153          137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ  216 (257)
Q Consensus       137 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  216 (257)
                      ..|..|..+++|+.|++++|.++++.|.+|..+++|+.|++++|++++..+..+..+++|++|++++|++.+..|..+..
T Consensus       485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred             cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence            34455556666666666666666666666666666666666666666555556666666666666666666666666655


Q ss_pred             c-cCCCeeccccCcccccCCC
Q 048153          217 F-ATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       217 ~-~~L~~l~l~~n~~~~~~~~  236 (257)
                      + ++|+.|++++|||.|+|..
T Consensus       565 l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          565 FPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CCTTCCEEECTTCCBCCSGGG
T ss_pred             hhCcCCEEEeeCCCCcccCCc
Confidence            5 4566666666666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=4.5e-23  Score=183.40  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             cceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccc-----cCC----hhhhcCC
Q 048153          124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG-----KIP----LQLVELN  194 (257)
Q Consensus       124 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~~~~~~  194 (257)
                      |++|++++|.+.+..+..|..+++|++|++++|.+++..+.++..+++|+.|++++|...+     .+|    ..+..++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            5555555555554444455555555555555555555555555555555555555443221     111    1445566


Q ss_pred             CCCEEEccCCcccCCCChhhhhccCCCeeccccCcccc-cCCCCC----ccCcccccccccCCccc
Q 048153          195 TLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC-GLPLPI----CRSPVTMLKASTTNKEM  255 (257)
Q Consensus       195 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~----~~~~l~~l~~~~~~~~~  255 (257)
                      +|++|++++|.+.+..+..+..+++|+++++++|.+.. .++...    ...+++.|+++.|....
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~  395 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK  395 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence            67777777777776666666777777777777775432 222211    11467777777776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=5.5e-24  Score=185.49  Aligned_cols=206  Identities=21%  Similarity=0.221  Sum_probs=168.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccC--ChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKV--PVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSN   77 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~   77 (257)
                      +.|++++|.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+. +..+ .+..+.. 
T Consensus       328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l-  403 (570)
T 2z63_A          328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF-  403 (570)
T ss_dssp             CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC-
T ss_pred             CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEc-
Confidence            4688999998866654  78999999999999998554  67888999999999999998876544 3221 2222322 


Q ss_pred             CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccc---ccccccccceEEcccCccccccCCCcCCCCCcCEEecc
Q 048153           78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY---QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLS  154 (257)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~  154 (257)
                                                    ..+.+....   ....+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       404 ------------------------------~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  453 (570)
T 2z63_A          404 ------------------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  453 (570)
T ss_dssp             ------------------------------TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ------------------------------cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence                                          222221111   11236889999999999998889999999999999999


Q ss_pred             CCccc-cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          155 HNDLI-GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       155 ~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      +|.++ +..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.+..+..+..+++|+.+++++|++.|+
T Consensus       454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            99987 56888999999999999999999988899999999999999999999988888899999999999999999999


Q ss_pred             CCCCCcc
Q 048153          234 LPLPICR  240 (257)
Q Consensus       234 ~~~~~~~  240 (257)
                      ||...+.
T Consensus       534 ~~~~~~~  540 (570)
T 2z63_A          534 CPRIDYL  540 (570)
T ss_dssp             TTTTHHH
T ss_pred             CcchHHH
Confidence            9976543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.91  E-value=9.3e-24  Score=174.22  Aligned_cols=180  Identities=25%  Similarity=0.242  Sum_probs=153.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhh-CCCCCCeeeccCceecccCCCCCcCCcccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLC-RLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~   79 (257)
                      ++++++++++. .+|..+.  ..++.|++++|++++..+..|. .+++|++|++++|.++++.+..+..           
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   86 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-----------   86 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence            36889999998 4665543  4689999999999987777787 8999999999999998877665543           


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI  159 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  159 (257)
                                                               +++|++|++++|.++...+..|..+++|+.|++++|.++
T Consensus        87 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           87 -----------------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence                                                     678999999999999888888999999999999999999


Q ss_pred             cCCCccccCccCCCEEEccCCcccccCChhh---hcCCCCCEEEccCCcccCCCChhhhhccC--CCeeccccCcccccC
Q 048153          160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQL---VELNTLAVFSVAHNNLSGKIPEWTAQFAT--FSESSYEGNHFLCGL  234 (257)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~  234 (257)
                      .+.+..|..+++|+.|++++|++++..+..+   ..+++|+.|+|++|++.+..+..+..++.  ++.+++++|+|.|+|
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            8889999999999999999999995444444   56899999999999999666677888877  489999999999987


Q ss_pred             C
Q 048153          235 P  235 (257)
Q Consensus       235 ~  235 (257)
                      .
T Consensus       206 ~  206 (361)
T 2xot_A          206 K  206 (361)
T ss_dssp             H
T ss_pred             C
Confidence            5

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=5.4e-25  Score=178.14  Aligned_cols=223  Identities=15%  Similarity=0.151  Sum_probs=165.8

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCccc-ccCChhhh-------CCCCCCeeeccCceecccCCCCC--cC-Cc
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE-GKVPVQLC-------RLNQLQLLDLSNNNLHGLIPPCF--DN-TT   70 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~-~~   70 (257)
                      +|++++|.+  .+|..+...  |+.|++++|.+. ...|..+.       .+++|++|++++|.+++..|..+  .. ..
T Consensus        47 ~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  122 (312)
T 1wwl_A           47 YLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD  122 (312)
T ss_dssp             THHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred             eEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence            456788888  567655544  999999999995 45666555       79999999999999997777653  22 22


Q ss_pred             ccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCE
Q 048153           71 LHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQT  150 (257)
Q Consensus        71 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~  150 (257)
                      +..+....+.+...+....                        . .....+++|++|++++|.+.+..+..+..+++|++
T Consensus       123 L~~L~Ls~N~l~~~~~~~~------------------------~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A          123 LNILNLRNVSWATRDAWLA------------------------E-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             CSEEEEESCBCSSSSSHHH------------------------H-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred             ccEEEccCCCCcchhHHHH------------------------H-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence            4444444444333211000                        0 00001378999999999999888899999999999


Q ss_pred             EeccCCccccC--CCccc--cCccCCCEEEccCCccccc---CChhhhcCCCCCEEEccCCcccCCCC-hhhhhccCCCe
Q 048153          151 LNLSHNDLIGT--IPSTF--SNLKHIESLDLSYNQLNGK---IPLQLVELNTLAVFSVAHNNLSGKIP-EWTAQFATFSE  222 (257)
Q Consensus       151 L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~  222 (257)
                      |++++|.+.+.  .+..+  ..+++|+.|++++|++++.   ....+..+++|+.|++++|++.+..| ..+..+++|+.
T Consensus       178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence            99999997654  23333  7889999999999999832   12334677999999999999998775 45566899999


Q ss_pred             eccccCcccccCCCCCccCcccccccccCCccc
Q 048153          223 SSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM  255 (257)
Q Consensus       223 l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~  255 (257)
                      |++++|.+. .+|..+. +.++.|++++|....
T Consensus       258 L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          258 LNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             EECTTSCCS-SCCSSCC-SEEEEEECCSSCCCS
T ss_pred             EECCCCccC-hhhhhcc-CCceEEECCCCCCCC
Confidence            999999987 7887766 899999999997653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=5.5e-24  Score=192.01  Aligned_cols=222  Identities=18%  Similarity=0.218  Sum_probs=129.6

Q ss_pred             CEEEcccccccc-----------------cCCcccc--CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCce-ecc
Q 048153            1 MILDLSYNRLNG-----------------SIPDLVD--GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN-LHG   60 (257)
Q Consensus         1 ~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~   60 (257)
                      ++|+|++|++++                 .+|+.++  ++++|++|++++|.+.+.+|..|+.+++|++|++++|+ +++
T Consensus       451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg  530 (876)
T 4ecn_A          451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA  530 (876)
T ss_dssp             CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred             CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence            578999999997                 3788877  99999999999999888899999999999999999997 776


Q ss_pred             -cCCCCCcCC--------cccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEccc
Q 048153           61 -LIPPCFDNT--------TLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSC  131 (257)
Q Consensus        61 -~~~~~~~~~--------~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  131 (257)
                       ..|..+...        .+..+....+.+..++..      ..+..+..|+.+++..+.+........+++|++|++++
T Consensus       531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~------~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS------ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH------HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred             ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh------hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence             444433222        455666666666544330      01223334455555555444322223355666666666


Q ss_pred             CccccccCCCcCCCCC-cCEEeccCCccccCCCccccCccC--CCEEEccCCcccccCChh---hh--cCCCCCEEEccC
Q 048153          132 NKLICHISPQIGNLTR-IQTLNLSHNDLIGTIPSTFSNLKH--IESLDLSYNQLNGKIPLQ---LV--ELNTLAVFSVAH  203 (257)
Q Consensus       132 n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~---~~--~~~~L~~L~L~~  203 (257)
                      |.+. .+|..+..+++ |+.|++++|.++ ..|..+...+.  |+.|++++|++++..|..   +.  ..++|+.|++++
T Consensus       605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~  682 (876)
T 4ecn_A          605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY  682 (876)
T ss_dssp             SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred             Cccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence            6666 55555666666 666666666666 34444443332  555555555554433211   11  122444555555


Q ss_pred             CcccCCCChhh-hhccCCCeeccccCccc
Q 048153          204 NNLSGKIPEWT-AQFATFSESSYEGNHFL  231 (257)
Q Consensus       204 n~l~~~~~~~~-~~~~~L~~l~l~~n~~~  231 (257)
                      |.+. .+|..+ ..+++|+.|++++|.+.
T Consensus       683 N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          683 NEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             SCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             CcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence            5544 333222 23444555555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=180.59  Aligned_cols=82  Identities=20%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++||+++|+++ .+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+... .+..+..+.+
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57999999999 5676665  899999999999998788899999999999999999998878776654 4666777666


Q ss_pred             CCCCCc
Q 048153           80 SLKPFE   85 (257)
Q Consensus        80 ~l~~~~   85 (257)
                      .+..++
T Consensus        80 ~l~~lp   85 (520)
T 2z7x_B           80 KLVKIS   85 (520)
T ss_dssp             CCCEEE
T ss_pred             ceeecC
Confidence            665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=7.5e-23  Score=185.94  Aligned_cols=255  Identities=19%  Similarity=0.197  Sum_probs=159.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccC-ChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKV-PVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~   78 (257)
                      ++|||++|.+++..|..|+++++|++|++++|...+.+ |.+|+.+++|++|++++|.+++..|..+..+. +..+....
T Consensus        27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  106 (844)
T 3j0a_A           27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF  106 (844)
T ss_dssp             CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred             CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence            46777777777666666777777777777766433233 55666666677777777766666565554433 33344333


Q ss_pred             CCCCC--Ccchhhh----------------h--hhhhhhcccchhhccccccccccccccc-------------------
Q 048153           79 SSLKP--FETSFLV----------------K--NIYIYREKKILEIFEFTTKNIAYTYQGR-------------------  119 (257)
Q Consensus        79 ~~l~~--~~~~~~~----------------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------  119 (257)
                      +.+..  .....+.                .  ....+..+..|+.+++..+.+.......                   
T Consensus       107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred             CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence            33321  0000000                0  0011223333444444433322110000                   


Q ss_pred             ---------------cccccceEEcccCccccccCCCcC------------------------------------C--CC
Q 048153          120 ---------------VVSYLSGLDLSCNKLICHISPQIG------------------------------------N--LT  146 (257)
Q Consensus       120 ---------------~~~~L~~L~ls~n~~~~~~~~~~~------------------------------------~--l~  146 (257)
                                     ....|++|++++|.+++..+..+.                                    +  .+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence                           001266777777755433332221                                    1  25


Q ss_pred             CcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccc
Q 048153          147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE  226 (257)
Q Consensus       147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  226 (257)
                      +|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            68888888888887778888888899999999999987778888888999999999999987778888889999999999


Q ss_pred             cCcccccCCCCC-ccCcccccccccCCccc
Q 048153          227 GNHFLCGLPLPI-CRSPVTMLKASTTNKEM  255 (257)
Q Consensus       227 ~n~~~~~~~~~~-~~~~l~~l~~~~~~~~~  255 (257)
                      +|.+..-.+..+ ..+.++.|++++|....
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            998765444444 34789999999887543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=7.5e-23  Score=167.86  Aligned_cols=242  Identities=18%  Similarity=0.224  Sum_probs=165.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|++++..+  ++.+++|++|++++|.++. + +.+..+++|++|++++|.+.+..+ ......+..+....+.
T Consensus        69 ~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~  143 (347)
T 4fmz_A           69 EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH  143 (347)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred             cEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence            579999999995443  9999999999999999984 3 468999999999999999986544 2222334444444442


Q ss_pred             -CCCCcchhhh-------------hhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCC
Q 048153           81 -LKPFETSFLV-------------KNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLT  146 (257)
Q Consensus        81 -l~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~  146 (257)
                       ..........             ........+..++.+++..+.+........+++|+++++++|.+....+  +..++
T Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~  221 (347)
T 4fmz_A          144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMT  221 (347)
T ss_dssp             TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred             CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCC
Confidence             2211110000             0011133344555555555555444444446667777777777664433  67778


Q ss_pred             CcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccc
Q 048153          147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE  226 (257)
Q Consensus       147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  226 (257)
                      +|++|++++|.+++..+  +..+++|+.|++++|.+++ . ..+..+++|+.|++++|++.+.  ..+..+++|+.++++
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence            88888888888885443  7778888888888888874 3 4577788888888888888753  346778889999999


Q ss_pred             cCcccccCCCCC-ccCcccccccccCCccc
Q 048153          227 GNHFLCGLPLPI-CRSPVTMLKASTTNKEM  255 (257)
Q Consensus       227 ~n~~~~~~~~~~-~~~~l~~l~~~~~~~~~  255 (257)
                      +|++....|..+ ..+.++.|++++|....
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            988776655544 34788888888887543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.90  E-value=6.2e-23  Score=157.78  Aligned_cols=157  Identities=20%  Similarity=0.254  Sum_probs=110.4

Q ss_pred             cEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccchhh
Q 048153           25 SHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEI  104 (257)
Q Consensus        25 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  104 (257)
                      +.++++++.++ .+|..+.  ++++.|++++|.++++.+..+..                                    
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------   54 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------   54 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence            45666666666 4454443  46777777777776655544432                                    


Q ss_pred             ccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccc
Q 048153          105 FEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNG  184 (257)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  184 (257)
                                      +++|++|++++|.+++..|..|.++++|++|++++|.++.+.+..|..+++|+.|++++|++++
T Consensus        55 ----------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           55 ----------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             ----------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                            4567777777777776667777777777777777777776666667777777777777777776


Q ss_pred             cCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          185 KIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       185 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      ..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            6667777777777777777777766666677777777788888877776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.6e-22  Score=161.90  Aligned_cols=203  Identities=19%  Similarity=0.165  Sum_probs=162.9

Q ss_pred             cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhh
Q 048153           17 LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIY   96 (257)
Q Consensus        17 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~   96 (257)
                      .++.+++++.++++++.++ .+|..+.  +++++|++++|.+++..+..+....                          
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~--------------------------   55 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYT--------------------------   55 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT--------------------------
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCC--------------------------
Confidence            3678899999999999998 5665554  5899999999999877665544322                          


Q ss_pred             hcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEE
Q 048153           97 REKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD  176 (257)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  176 (257)
                          .++.+++..+.+........+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|+.|+
T Consensus        56 ----~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           56 ----RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             ----TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             ----CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence                22333333333333222234788999999999998 6677889999999999999999988888999999999999


Q ss_pred             ccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCcc
Q 048153          177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       177 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~  254 (257)
                      +++|++++..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+. .+|..+ -...++.+++++|.-.
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            9999999776777889999999999999999666667788999999999999977 577666 3467899999988643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.2e-22  Score=176.86  Aligned_cols=250  Identities=16%  Similarity=0.131  Sum_probs=170.4

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      +++|+++|++++ +|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+... .+..+..+.+
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            479999999995 665554  899999999999998888899999999999999999999988877664 4667777777


Q ss_pred             CCCCCcchhhhh---------------hhhhhhcccchhhccccccccccccccc-------------------------
Q 048153           80 SLKPFETSFLVK---------------NIYIYREKKILEIFEFTTKNIAYTYQGR-------------------------  119 (257)
Q Consensus        80 ~l~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------------  119 (257)
                      .+..++......               ....+..+..++.+++..+.+.......                         
T Consensus       111 ~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~  190 (562)
T 3a79_B          111 RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES  190 (562)
T ss_dssp             CCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred             cCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCccc
Confidence            665544321000               0012223333444333333221100000                         


Q ss_pred             --------------------------------------------------------------------------------
Q 048153          120 --------------------------------------------------------------------------------  119 (257)
Q Consensus       120 --------------------------------------------------------------------------------  119 (257)
                                                                                                      
T Consensus       191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~  270 (562)
T 3a79_B          191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF  270 (562)
T ss_dssp             EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred             ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---cccccceEEcccCccccccCCCc-----------------------------------------------------C
Q 048153          120 ---VVSYLSGLDLSCNKLICHISPQI-----------------------------------------------------G  143 (257)
Q Consensus       120 ---~~~~L~~L~ls~n~~~~~~~~~~-----------------------------------------------------~  143 (257)
                         ...+|++|++++|.+.+.+|..+                                                     .
T Consensus       271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  350 (562)
T 3a79_B          271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP  350 (562)
T ss_dssp             HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred             HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence               00145666666666665555443                                                     5


Q ss_pred             CCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc--CChhhhcCCCCCEEEccCCcccCCCCh-hhhhccCC
Q 048153          144 NLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK--IPLQLVELNTLAVFSVAHNNLSGKIPE-WTAQFATF  220 (257)
Q Consensus       144 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L  220 (257)
                      .+++|++|++++|.+++..|..+..+++|+.|++++|++++.  .|..+..+++|+.|++++|++.+.+|. .+..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            567788888888888877777788888888888888888742  234567778888888888888764553 46667888


Q ss_pred             CeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          221 SESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       221 ~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      +++++++|.+....|..+. +.++.|++++|...
T Consensus       431 ~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~  463 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM  463 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC
T ss_pred             CEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc
Confidence            8888888887766665433 67888888888654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.5e-23  Score=168.24  Aligned_cols=195  Identities=19%  Similarity=0.152  Sum_probs=109.1

Q ss_pred             CEEEcccccccccCCccc--cCcccCcEeeCcCCcccccCC----hhhhCCCCCCeeeccCceecccCCCCCcCCccccc
Q 048153            1 MILDLSYNRLNGSIPDLV--DGLSQLSHLILAHNNLEGKVP----VQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHES   74 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~   74 (257)
                      ++|++++|++.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..      
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~------  167 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA------  167 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC------
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc------
Confidence            356677777766666665  666777777777776664333    23345666777777777766555444433      


Q ss_pred             ccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccc---cc-CCCcCCCCCcCE
Q 048153           75 YSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC---HI-SPQIGNLTRIQT  150 (257)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~---~~-~~~~~~l~~L~~  150 (257)
                                                                    +++|++|++++|.+.+   .. +..+..+++|++
T Consensus       168 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~  201 (310)
T 4glp_A          168 ----------------------------------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN  201 (310)
T ss_dssp             ----------------------------------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred             ----------------------------------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence                                                          4556666666665432   11 122345566666


Q ss_pred             EeccCCccccCCCc----cccCccCCCEEEccCCcccccCChhhhcC---CCCCEEEccCCcccCCCChhhhhccCCCee
Q 048153          151 LNLSHNDLIGTIPS----TFSNLKHIESLDLSYNQLNGKIPLQLVEL---NTLAVFSVAHNNLSGKIPEWTAQFATFSES  223 (257)
Q Consensus       151 L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  223 (257)
                      |++++|.++. .+.    .+..+++|+.|++++|++++..|..+..+   ++|++|++++|++. .+|..+  .++|++|
T Consensus       202 L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L  277 (310)
T 4glp_A          202 LALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVL  277 (310)
T ss_dssp             CBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCE
T ss_pred             EECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEE
Confidence            6666666652 121    23455666666666666665445444443   46666666666666 445443  2566666


Q ss_pred             ccccCcccccCCCCCccCcccccccccCC
Q 048153          224 SYEGNHFLCGLPLPICRSPVTMLKASTTN  252 (257)
Q Consensus       224 ~l~~n~~~~~~~~~~~~~~l~~l~~~~~~  252 (257)
                      ++++|.+.. +|.....+.++.|++++|.
T Consensus       278 ~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          278 DLSSNRLNR-APQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             ECCSCCCCS-CCCTTSCCCCSCEECSSTT
T ss_pred             ECCCCcCCC-CchhhhCCCccEEECcCCC
Confidence            666666553 2332233556666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=1.3e-23  Score=182.47  Aligned_cols=131  Identities=11%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             ccccceEEcccCc-cccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChh-hhcCCCCCE
Q 048153          121 VSYLSGLDLSCNK-LICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQ-LVELNTLAV  198 (257)
Q Consensus       121 ~~~L~~L~ls~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~  198 (257)
                      +++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+. ..+.. +..+++|+.
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~  200 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY  200 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence            5566667776666 33333345666667777777777666666666666666777777766665 33333 244667777


Q ss_pred             EEccCCcccCCC--C-hhhhhccCCCeeccccCcccccCCCCC-----ccCcccccccccCC
Q 048153          199 FSVAHNNLSGKI--P-EWTAQFATFSESSYEGNHFLCGLPLPI-----CRSPVTMLKASTTN  252 (257)
Q Consensus       199 L~L~~n~l~~~~--~-~~~~~~~~L~~l~l~~n~~~~~~~~~~-----~~~~l~~l~~~~~~  252 (257)
                      |++++|++.+..  + .....+++|+.+++++|.+.+..+..+     ....++.++++++.
T Consensus       201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            777777666431  1 122235666777777766554333222     22466666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=1.2e-22  Score=173.01  Aligned_cols=125  Identities=22%  Similarity=0.281  Sum_probs=75.8

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.+.+.  +.+..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|+
T Consensus       220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  293 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE  293 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence            44555555555555432  245556666666666666664433  5566667777777776664322  56667777777


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      +++|++.+..+  +..+++|+.|++++|.+....|. ...+.++.|++++|...
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGG-GGCTTCCEEECCSSCCC
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCCcCCCchhh-ccCccCCEeECCCCccC
Confidence            77777764433  55677777777777776654441 24467777777776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=155.87  Aligned_cols=115  Identities=17%  Similarity=0.228  Sum_probs=81.0

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            45566777777777666666677777777777777777766666677777777777777777766566667777777777


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +++|++.+..|..+..+++|+.+++++|+|.|+|+
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            77777776666667777777777777777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=177.03  Aligned_cols=223  Identities=20%  Similarity=0.168  Sum_probs=168.3

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~   79 (257)
                      ++|++++|++++..+..|+++++|++|++++|++.+..+..|+.+++|++|++++|.+++..+..+..+. +..+....+
T Consensus        31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence            4688888888877777888888888888888888877777888888888888888888877766665433 333444333


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCcccc-ccCCCcCCCCCcCEEeccCCcc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      .+..++..                             ....+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus       111 ~l~~l~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          111 NLASLENF-----------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             CCCCSTTC-----------------------------SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             ccccCCCc-----------------------------cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            33322210                             01226789999999998876 3588889999999999999999


Q ss_pred             ccCCCccccCccCC----CEEEccCCcccccCChhhhcCCCCCEEEccCC------------------------------
Q 048153          159 IGTIPSTFSNLKHI----ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN------------------------------  204 (257)
Q Consensus       159 ~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n------------------------------  204 (257)
                      ++..+..++.+.+|    ..+++++|.+++..+..+... +|+.|++++|                              
T Consensus       162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            88778888888888    889999999987777666554 7888888776                              


Q ss_pred             ----------------------------cccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          205 ----------------------------NLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       205 ----------------------------~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                                                  .+.+..|..+..+++|+.+++++|.+. .+|..+....++.|++++|...
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCS
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCccc
Confidence                                        334456677778899999999999866 5776664448999999888654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=9.6e-22  Score=166.86  Aligned_cols=235  Identities=19%  Similarity=0.177  Sum_probs=134.6

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++..  ......+..+....+.
T Consensus        45 ~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~  117 (457)
T 3bz5_A           45 TSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK  117 (457)
T ss_dssp             CEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred             CEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence            4678888888854 4 577888888888888887753 3  677777888888888777642  2122234455555554


Q ss_pred             CCCCcchhhhhhhh-----------hhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcC
Q 048153           81 LKPFETSFLVKNIY-----------IYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQ  149 (257)
Q Consensus        81 l~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~  149 (257)
                      +..++........+           .......++.+++..+..........+++|++|++++|.+++. |  +..+++|+
T Consensus       118 l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~  194 (457)
T 3bz5_A          118 LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D--VSQNKLLN  194 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C--CTTCTTCC
T ss_pred             CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c--cccCCCCC
Confidence            44432100000000           0112223333344333111111223356677777777777643 3  66677777


Q ss_pred             EEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-------CCCe
Q 048153          150 TLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-------TFSE  222 (257)
Q Consensus       150 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-------~L~~  222 (257)
                      .|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++|++.+..+..+..+.       +|+.
T Consensus       195 ~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~  268 (457)
T 3bz5_A          195 RLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE  268 (457)
T ss_dssp             EEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             EEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence            777777777754   25666777777777777775 44  66677777777777777765444433332       4455


Q ss_pred             eccccCcccccCCCCCccCcccccccccCC
Q 048153          223 SSYEGNHFLCGLPLPICRSPVTMLKASTTN  252 (257)
Q Consensus       223 l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~  252 (257)
                      +++++|++.+.+|...| +.++.|++++|.
T Consensus       269 L~l~~n~~~~~~~~~~l-~~L~~L~Ls~n~  297 (457)
T 3bz5_A          269 IDLTHNTQLIYFQAEGC-RKIKELDVTHNT  297 (457)
T ss_dssp             CCCTTCTTCCEEECTTC-TTCCCCCCTTCT
T ss_pred             EECCCCccCCccccccc-ccCCEEECCCCc
Confidence            55556655555553222 556666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.89  E-value=4.3e-22  Score=154.02  Aligned_cols=114  Identities=22%  Similarity=0.302  Sum_probs=80.2

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|+
T Consensus        63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A           63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA  141 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred             ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence            455677777777776555556677777777777777777666666677777777777777777 5666667777777777


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +++|++.+..+..+..+++|+.+++++|+|.|+|+
T Consensus       142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77777775555566667777777777777777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=7.9e-22  Score=168.03  Aligned_cols=145  Identities=19%  Similarity=0.274  Sum_probs=105.5

Q ss_pred             chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCC
Q 048153          101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN  180 (257)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  180 (257)
                      .++.+++..+.+........+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|
T Consensus       222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  297 (466)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence            444455555544443334456788888898888875544  7788888999998888886544  777888889999988


Q ss_pred             cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCcc
Q 048153          181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKE  254 (257)
Q Consensus       181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~  254 (257)
                      ++++..+  +..+++|+.|++++|++.+..|  +..+++|+++++++|++.+. +.-...+.++.|++++|...
T Consensus       298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred             cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence            8885433  6778888999999988886655  66788889999988887653 32224478888888887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=6.2e-22  Score=159.84  Aligned_cols=188  Identities=21%  Similarity=0.261  Sum_probs=135.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+.. ++ .++.+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +.             
T Consensus        44 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~-------------  104 (308)
T 1h6u_A           44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-SA-IA-------------  104 (308)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-GG-GT-------------
T ss_pred             CEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-hh-hc-------------
Confidence            467777777774 34 47777788888888887774333  77777788888887777643 21 11             


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                       .+..++.+++..+.+........+++|++|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       105 -----------------~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          105 -----------------GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             -----------------TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             -----------------CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence                             122233333333333333223347889999999999885543  7888999999999999986


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC  232 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  232 (257)
                      ..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++.+..+  +..+++|+.+++++|++.+
T Consensus       166 ~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            444  7888999999999999985433  7888999999999999985543  7789999999999999865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.1e-21  Score=149.47  Aligned_cols=176  Identities=22%  Similarity=0.179  Sum_probs=142.1

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSL   81 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l   81 (257)
                      .++.+++.+. .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..             
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------   74 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK-------------   74 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-------------
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC-------------
Confidence            5677888877 445333  468999999999998766777888999999999999988665544432             


Q ss_pred             CCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC
Q 048153           82 KPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT  161 (257)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  161 (257)
                                                             +++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        75 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  115 (208)
T 2o6s_A           75 ---------------------------------------LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL  115 (208)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ---------------------------------------CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCccc
Confidence                                                   56789999999999877777788899999999999999977


Q ss_pred             CCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCc
Q 048153          162 IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC  239 (257)
Q Consensus       162 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  239 (257)
                      .+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+.       +++|+.++++.|.+.+.+|..+.
T Consensus       116 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCc
Confidence            777788889999999999999866666678889999999999987643       56788888888988888887663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=8.5e-22  Score=151.44  Aligned_cols=192  Identities=22%  Similarity=0.302  Sum_probs=151.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.++++++.++ .+|..+.  ++++.|++++|.++...+..|..+++|++|++++|.+++..|..+..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            35788999998 5665554  78999999999999888888999999999999999999877776654            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              +++|++|++++|.++...+..|..+++|+.|++++|.+++
T Consensus        79 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           79 ----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             ----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                                                    6789999999999997777778999999999999999999


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCC-hhhhhccCCCeeccccCcccccCCCCCc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP-EWTAQFATFSESSYEGNHFLCGLPLPIC  239 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~  239 (257)
                      ..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+...-. .++..  .++.-.+......|.-|...-
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~--~l~~~~~~~~~~~C~~P~~l~  196 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLAD--YLHTNPIETSGARCTSPRRLA  196 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHH--HHHHCCCBCSCCBEEESGGGT
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHH--HHHhCCCCccCCCcCCchHHc
Confidence            989999999999999999999997777788999999999999999975332 11111  111112233444566665554


Q ss_pred             cCcccccccc
Q 048153          240 RSPVTMLKAS  249 (257)
Q Consensus       240 ~~~l~~l~~~  249 (257)
                      ...+..++.+
T Consensus       197 g~~l~~l~~~  206 (220)
T 2v9t_B          197 NKRIGQIKSK  206 (220)
T ss_dssp             TCBGGGSCGG
T ss_pred             CCchhhCCHH
Confidence            5555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=1.6e-22  Score=175.55  Aligned_cols=82  Identities=26%  Similarity=0.287  Sum_probs=56.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~   79 (257)
                      ++|++++|++++..|..|+++++|++|++++|++.+..|..|+.+++|++|++++|.+++..+..+..+ .+..+....+
T Consensus        29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence            467888888877777777888888888888888777777777777788888888887776655534333 3444444444


Q ss_pred             CCC
Q 048153           80 SLK   82 (257)
Q Consensus        80 ~l~   82 (257)
                      .+.
T Consensus       109 ~l~  111 (549)
T 2z81_A          109 PYQ  111 (549)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=9.1e-22  Score=173.27  Aligned_cols=241  Identities=22%  Similarity=0.219  Sum_probs=157.5

Q ss_pred             CEEEccccccc--ccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCC-CCcCCc-cccccc
Q 048153            1 MILDLSYNRLN--GSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPP-CFDNTT-LHESYS   76 (257)
Q Consensus         1 ~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~-l~~~~~   76 (257)
                      +.|++++|.+.  +..+..+..+.+|+++++..+.... .+..+..+++|+.+++.++......+. .+.... +..+..
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l  452 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  452 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccc
Confidence            46788888876  3456666778888888888888773 455677788888888887776544332 222222 233333


Q ss_pred             CCCCCCCCcchhhhhhhhhhhcccchhhcccccccccc-c--cccccccccceEEcccCccccccCCCcCCCCCcCEEec
Q 048153           77 NGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAY-T--YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNL  153 (257)
Q Consensus        77 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l  153 (257)
                      ..+.+......       .......++.+.+..+.... .  .....+++|++|++++|.+++..|..|.++++|+.|++
T Consensus       453 s~n~l~~~~~~-------~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          453 SHTHTRVAFNG-------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TTSCCEECCTT-------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccc-------ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            33333222211       11122334444444433211 1  11233678999999999998888888999999999999


Q ss_pred             cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcC-CCCCEEEccCCcccCCCC-hhhh-hccCCCeeccccCcc
Q 048153          154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVEL-NTLAVFSVAHNNLSGKIP-EWTA-QFATFSESSYEGNHF  230 (257)
Q Consensus       154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~-~~~~L~~l~l~~n~~  230 (257)
                      ++|.+++..+.+|..+++|+.|++++|++++..|..+..+ ++|+.|++++|.+...-. .++. .+..-..........
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~  605 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM  605 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGC
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCc
Confidence            9999998888888888999999999999988778888777 589999999998875322 1111 121112222233456


Q ss_pred             cccCCCCCccCcccccccc
Q 048153          231 LCGLPLPICRSPVTMLKAS  249 (257)
Q Consensus       231 ~~~~~~~~~~~~l~~l~~~  249 (257)
                      .|.-|...-..++..++++
T Consensus       606 ~C~~P~~~~g~~l~~~~~~  624 (635)
T 4g8a_A          606 ECATPSDKQGMPVLSLNIT  624 (635)
T ss_dssp             BBCSSTTTTTCBGGGCCCC
T ss_pred             eeCCchHHCCCEeeeeccC
Confidence            7888888777788777763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.7e-22  Score=172.93  Aligned_cols=217  Identities=19%  Similarity=0.199  Sum_probs=172.7

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|+|++|.+++..|  |+.+++|++|++++|.+++..     ..++|++|++++|.+++..+..+  ..+..+....+.
T Consensus        61 ~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~~l--~~L~~L~L~~N~  131 (487)
T 3oja_A           61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNK  131 (487)
T ss_dssp             CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEECCC--SSCEEEECCSSC
T ss_pred             CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcccc--CCCCEEECCCCC
Confidence            579999999997665  999999999999999998543     23799999999999988776654  345666777777


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccc---cccccceEEcccCccccccCCCcCCCCCcCEEeccCCc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR---VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND  157 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~  157 (257)
                      +.......+       ..+..++.++++.+.+.......   .+++|++|++++|.+++..+  ...+++|+.|++++|.
T Consensus       132 l~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          132 ITMLRDLDE-------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             CCSGGGBCG-------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSC
T ss_pred             CCCCCchhh-------cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCC
Confidence            665533222       23456677777777665543222   36899999999999986643  3468999999999999


Q ss_pred             cccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCccc-CCCChhhhhccCCCeeccc-------cCc
Q 048153          158 LIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS-GKIPEWTAQFATFSESSYE-------GNH  229 (257)
Q Consensus       158 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~l~l~-------~n~  229 (257)
                      +++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++       .++
T Consensus       203 l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  280 (487)
T 3oja_A          203 LAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (487)
T ss_dssp             CCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSS
T ss_pred             CCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCc
Confidence            996544 5889999999999999999 46777888999999999999998 5677888888999999987       888


Q ss_pred             ccccCCCC
Q 048153          230 FLCGLPLP  237 (257)
Q Consensus       230 ~~~~~~~~  237 (257)
                      +.|.++..
T Consensus       281 ~~c~~~~~  288 (487)
T 3oja_A          281 EECTVPTL  288 (487)
T ss_dssp             CCCSSTTC
T ss_pred             ccccCCcc
Confidence            88888754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=5.4e-23  Score=166.77  Aligned_cols=234  Identities=18%  Similarity=0.156  Sum_probs=185.2

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK   82 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~   82 (257)
                      .+++.+.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ ......+..+....+.+.
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc
Confidence            4566666665555667788899999999999998888899999999999999999987655 222234556666666554


Q ss_pred             CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153           83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI  162 (257)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  162 (257)
                      .++            ....++.+.+..+.+....... +++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        94 ~l~------------~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           94 ELL------------VGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             EEE------------ECTTCCEEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             ccc------------CCCCcCEEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            333            2245667777777665554433 678999999999999888888999999999999999999877


Q ss_pred             Cccc-cCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-cc
Q 048153          163 PSTF-SNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CR  240 (257)
Q Consensus       163 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~  240 (257)
                      +..+ ..+++|+.|++++|++++. +. ...+++|+.|++++|++.+ +|..+..+++|+.|++++|.+. .+|..+ ..
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            7776 4789999999999999854 32 3358999999999999995 5555889999999999999977 467665 45


Q ss_pred             CcccccccccCCcc
Q 048153          241 SPVTMLKASTTNKE  254 (257)
Q Consensus       241 ~~l~~l~~~~~~~~  254 (257)
                      +.++.|++++|...
T Consensus       237 ~~L~~L~l~~N~~~  250 (317)
T 3o53_A          237 QNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECTTCCCB
T ss_pred             CCCCEEEccCCCcc
Confidence            89999999999765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.2e-21  Score=149.30  Aligned_cols=157  Identities=25%  Similarity=0.268  Sum_probs=135.2

Q ss_pred             CcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccchh
Q 048153           24 LSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILE  103 (257)
Q Consensus        24 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  103 (257)
                      -+.++++++.++ .+|..+  .+++++|++++|.+++..+..+..                                   
T Consensus         9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~-----------------------------------   50 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDE-----------------------------------   50 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred             CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcc-----------------------------------
Confidence            467888888887 455444  358999999999998765554433                                   


Q ss_pred             hccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccc
Q 048153          104 IFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN  183 (257)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  183 (257)
                                       +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus        51 -----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           51 -----------------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             -----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence                             677999999999999777777899999999999999999887778899999999999999999


Q ss_pred             ccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          184 GKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       184 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +..+..+..+++|++|++++|++.+..+..+..+++|+.+++++|++.|.+|
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            7666678899999999999999997777778899999999999999999876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8e-22  Score=153.53  Aligned_cols=171  Identities=18%  Similarity=0.193  Sum_probs=144.7

Q ss_pred             CEEEccccc-ccccCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCC
Q 048153            1 MILDLSYNR-LNGSIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~   78 (257)
                      ++|++++|+ ++...+..|+++++|++|++++ |.++...+..|..+++|++|++++|.+++. |. +..          
T Consensus        58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-p~-~~~----------  125 (239)
T 2xwt_C           58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PD-LTK----------  125 (239)
T ss_dssp             CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-CC-CTT----------
T ss_pred             cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-cc-ccc----------
Confidence            579999997 9877778999999999999998 999977778899999999999999999763 32 222          


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccc---eEEcccC-ccccccCCCcCCCCCcC-EEec
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLS---GLDLSCN-KLICHISPQIGNLTRIQ-TLNL  153 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~~~~~~~~~~~~l~~L~-~L~l  153 (257)
                                                                +++|+   +|++++| .+++..+..|..+++|+ .|++
T Consensus       126 ------------------------------------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          126 ------------------------------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             ------------------------------------------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             ------------------------------------------ccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence                                                      33444   9999999 89877778899999999 9999


Q ss_pred             cCCccccCCCccccCccCCCEEEccCCc-ccccCChhhhcC-CCCCEEEccCCcccCCCChhhhhccCCCeeccccCc
Q 048153          154 SHNDLIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVEL-NTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNH  229 (257)
Q Consensus       154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~  229 (257)
                      ++|.++.+.+..+.. ++|+.|++++|+ ++...+..+..+ ++|+.|++++|++.+ +|..  .+++|+.|+++++.
T Consensus       164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            999999666666666 899999999995 986667788889 999999999999984 4543  58899999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=150.62  Aligned_cols=191  Identities=21%  Similarity=0.304  Sum_probs=150.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCC-hhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP-VQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~   79 (257)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.++++.+..+..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46899999999 4665553  467899999999997754 45889999999999999998877665544           


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI  159 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  159 (257)
                                                               +++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus        80 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           80 -----------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             -----------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence                                                     677999999999999888888999999999999999999


Q ss_pred             cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCCh-hhhhccCCCeec-cccCcccccCCCC
Q 048153          160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE-WTAQFATFSESS-YEGNHFLCGLPLP  237 (257)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~l~-l~~n~~~~~~~~~  237 (257)
                      +..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|.+....+- ++...  ++.-. ..+++ .|..|..
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~--~~~~~~~~~~~-~C~~P~~  195 (220)
T 2v70_A          119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEW--LRKKRIVTGNP-RCQKPYF  195 (220)
T ss_dssp             CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHH--HHHSCCBCCCC-EEEESGG
T ss_pred             eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHH--HHhcCccccCC-ccCCChH
Confidence            98899999999999999999999987789999999999999999999865542 22111  11111 13333 5666655


Q ss_pred             CccCcccccccc
Q 048153          238 ICRSPVTMLKAS  249 (257)
Q Consensus       238 ~~~~~l~~l~~~  249 (257)
                      .-..++..+..+
T Consensus       196 l~g~~l~~l~~~  207 (220)
T 2v70_A          196 LKEIPIQDVAIQ  207 (220)
T ss_dssp             GTTEEGGGSCGG
T ss_pred             HCCCChhhCCHH
Confidence            444455555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=1.2e-20  Score=160.13  Aligned_cols=198  Identities=17%  Similarity=0.137  Sum_probs=125.6

Q ss_pred             cccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhh
Q 048153           11 NGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLV   90 (257)
Q Consensus        11 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~   90 (257)
                      .+..+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+++..  ......+..+....+.+..++     
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-----  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-----  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-----
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-----
Confidence            334555788999999999999999964 5 6899999999999999998763  222334666666666666542     


Q ss_pred             hhhhhhhcccchhhccccccccccccccccccccceEEcccCcccccc-------------------CCCcCCCCCcCEE
Q 048153           91 KNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHI-------------------SPQIGNLTRIQTL  151 (257)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-------------------~~~~~~l~~L~~L  151 (257)
                           ...+..++.+++..+.+.... ...+++|++|++++|.+++..                   ...+..+++|++|
T Consensus       102 -----~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          102 -----VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             -----CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             -----cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence                 122334444444444443322 223445555555555554321                   0024455566666


Q ss_pred             eccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153          152 NLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       152 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  231 (257)
                      ++++|.+++. +  +..+++|+.|++++|++++.   .+..+++|+.|++++|++.+ +|  ++.+++|+.+++++|++.
T Consensus       176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence            6666666643 2  55666677777777776643   25666777777777777775 44  566777777777777765


Q ss_pred             c
Q 048153          232 C  232 (257)
Q Consensus       232 ~  232 (257)
                      +
T Consensus       247 ~  247 (457)
T 3bz5_A          247 E  247 (457)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=2.9e-21  Score=163.76  Aligned_cols=224  Identities=17%  Similarity=0.192  Sum_probs=112.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCC-------------CeeeccCceecccCCCCCc
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQL-------------QLLDLSNNNLHGLIPPCFD   67 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~~~~~~   67 (257)
                      ++|++++|.+ +.+|+.++++++|++|++++|.+.+..|..++.+++|             ++|++++|.+++++. .. 
T Consensus        14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-~~-   90 (454)
T 1jl5_A           14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-LP-   90 (454)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-CC-
T ss_pred             hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-Cc-
Confidence            4688999999 5889999999999999999999998899888887764             888888888876433 21 


Q ss_pred             CCcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC
Q 048153           68 NTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR  147 (257)
Q Consensus        68 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~  147 (257)
                       ..+..+....+.+..++..           ...++.+++..+.+.....  ..++|++|++++|.+++ +| .+..+++
T Consensus        91 -~~L~~L~l~~n~l~~lp~~-----------~~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           91 -PHLESLVASCNSLTELPEL-----------PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             -TTCSEEECCSSCCSSCCCC-----------CTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             -CCCCEEEccCCcCCccccc-----------cCCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence             2344555555555544321           1233333333333322111  12445555555555543 33 3455555


Q ss_pred             cCEEeccCCccccCCCc-------------------cccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC
Q 048153          148 IQTLNLSHNDLIGTIPS-------------------TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG  208 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~-------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  208 (257)
                      |++|++++|.+++ .|.                   .+..+++|+.|++++|++++ +|..   .++|+.|++++|.+. 
T Consensus       155 L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-  228 (454)
T ss_dssp             CCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred             CCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence            5555555555443 222                   34445555555555555542 2221   135556666666555 


Q ss_pred             CCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCc
Q 048153          209 KIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       209 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~  253 (257)
                      .+|. ++.+++|+++++++|.+.. +|..  ...++.|++++|..
T Consensus       229 ~lp~-~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l  269 (454)
T 1jl5_A          229 ELPE-LQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYL  269 (454)
T ss_dssp             SCCC-CTTCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCC
T ss_pred             cccc-cCCCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCcc
Confidence            4443 5566777777777776553 3432  25566666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=1.3e-20  Score=150.94  Aligned_cols=104  Identities=21%  Similarity=0.317  Sum_probs=83.5

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.++..  +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|+.|+
T Consensus       111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            67788889998888754  4577888899999999988864  567788889999999998885443  77888999999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLC  232 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  232 (257)
                      +++|.+.+ ++ .+..+++|+.|++++|++.+
T Consensus       185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          185 LSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            99998884 44 37788889999999888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.3e-20  Score=152.02  Aligned_cols=204  Identities=17%  Similarity=0.263  Sum_probs=154.2

Q ss_pred             ccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCc
Q 048153            6 SYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFE   85 (257)
Q Consensus         6 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~   85 (257)
                      ..+.+.+..  .++.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..                 
T Consensus        27 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~-----------------   83 (308)
T 1h6u_A           27 GKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKN-----------------   83 (308)
T ss_dssp             TCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT-----------------
T ss_pred             CCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--Hcc-----------------
Confidence            344444332  35678999999999999984 44 68899999999999999976543  222                 


Q ss_pred             chhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCcc
Q 048153           86 TSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPST  165 (257)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  165 (257)
                                   +..++.+++..+.+........+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  
T Consensus        84 -------------l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--  146 (308)
T 1h6u_A           84 -------------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--  146 (308)
T ss_dssp             -------------CCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--
T ss_pred             -------------CCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--
Confidence                         122333344444333333334478899999999999864 3 38899999999999999996544  


Q ss_pred             ccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccc
Q 048153          166 FSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTM  245 (257)
Q Consensus       166 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~  245 (257)
                      +..+++|+.|++++|++++ .+. +..+++|+.|++++|++.+..+  +..+++|+.|++++|++....+ ....+.++.
T Consensus       147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~  221 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFI  221 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCE
T ss_pred             ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCE
Confidence            8889999999999999985 333 8889999999999999985443  7889999999999999876543 224578899


Q ss_pred             cccccCCcc
Q 048153          246 LKASTTNKE  254 (257)
Q Consensus       246 l~~~~~~~~  254 (257)
                      |++++|...
T Consensus       222 L~l~~N~i~  230 (308)
T 1h6u_A          222 VTLTNQTIT  230 (308)
T ss_dssp             EEEEEEEEE
T ss_pred             EEccCCeee
Confidence            998887643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=4.2e-20  Score=142.86  Aligned_cols=155  Identities=25%  Similarity=0.280  Sum_probs=134.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.++.+++++. .+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.++.+.+..+..            
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~------------   86 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------------   86 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc------------
Confidence            35788888888 5665443  89999999999999888899999999999999999997665554433            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              +++|++|++++|.+++..+..|..+++|+.|++++|.++ 
T Consensus        87 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-  125 (229)
T 3e6j_A           87 ----------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-  125 (229)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ----------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence                                                    678999999999999887788899999999999999999 


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCC
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP  211 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  211 (257)
                      ..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            677888999999999999999996666778999999999999999986544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=156.20  Aligned_cols=132  Identities=13%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC---C-CccccCccCCCEEEccCCcccccCCh----hhhc
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT---I-PSTFSNLKHIESLDLSYNQLNGKIPL----QLVE  192 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~  192 (257)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   . +..+..+++|++|++++|+++ ..+.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            67899999999999988888999999999999999997642   2 233467889999999999997 3333    2577


Q ss_pred             CCCCCEEEccCCcccCCCChhhhhc---cCCCeeccccCcccccCCCCCccCcccccccccCCccc
Q 048153          193 LNTLAVFSVAHNNLSGKIPEWTAQF---ATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM  255 (257)
Q Consensus       193 ~~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~  255 (257)
                      +++|++|++++|++.+..|..+..+   ++|++|++++|.+. .+|..++ +.++.|++++|....
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCC
Confidence            8999999999999998878777766   69999999999988 6787766 899999999998654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=4.6e-22  Score=164.19  Aligned_cols=250  Identities=16%  Similarity=0.155  Sum_probs=164.6

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCC----hhhhCCC-CCCeeeccCceecccCCCCCcC------Cc
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVP----VQLCRLN-QLQLLDLSNNNLHGLIPPCFDN------TT   70 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~------~~   70 (257)
                      ++.+++|.+++.+|+.+...++|++|++++|.+.+..+    ..|..++ +|++|++++|.++...+..+..      ..
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            56788888888888777777778888888888886666    6677787 7888888888887655443333      34


Q ss_pred             ccccccCCCCCCCCcchhhhhhhhhhhcc-cchhhcccccccccccccccc-------ccccceEEcccCccccc----c
Q 048153           71 LHESYSNGSSLKPFETSFLVKNIYIYREK-KILEIFEFTTKNIAYTYQGRV-------VSYLSGLDLSCNKLICH----I  138 (257)
Q Consensus        71 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~-------~~~L~~L~ls~n~~~~~----~  138 (257)
                      +..+..+.+.+...........   +... ..++.++++.+.+........       ..+|++|++++|.++..    +
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~---l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKT---LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHH---HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHH---HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            5566666666554433322221   2222 456666666666544332211       35788999999888732    2


Q ss_pred             CCCcCCCC-CcCEEeccCCccccCCCcccc----Cc-cCCCEEEccCCccccc----CChhhhc-CCCCCEEEccCCccc
Q 048153          139 SPQIGNLT-RIQTLNLSHNDLIGTIPSTFS----NL-KHIESLDLSYNQLNGK----IPLQLVE-LNTLAVFSVAHNNLS  207 (257)
Q Consensus       139 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~L~~n~l~  207 (257)
                      +..+..++ +|++|++++|.+++..+..+.    .. ++|+.|++++|++++.    ++..+.. .++|++|++++|.+.
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            33344454 899999999988876665444    33 5899999999988853    3444544 358999999999888


Q ss_pred             CCCChhh----hhccCCCeeccccCcccc-------cCCCCC-ccCcccccccccCCcc
Q 048153          208 GKIPEWT----AQFATFSESSYEGNHFLC-------GLPLPI-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       208 ~~~~~~~----~~~~~L~~l~l~~n~~~~-------~~~~~~-~~~~l~~l~~~~~~~~  254 (257)
                      +..+..+    ..+++|+.|++++|.+..       .++..+ ....+++||+++|...
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            6555333    446788999998887322       111122 4467888888888643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.7e-20  Score=154.78  Aligned_cols=156  Identities=28%  Similarity=0.304  Sum_probs=136.5

Q ss_pred             CEEEcccccccccCCcccc-CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCC
Q 048153            1 MILDLSYNRLNGSIPDLVD-GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGS   79 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~   79 (257)
                      +.|+|++|++++..+..|. .+++|++|++++|++.+..+..|..+++|++|++++|.++...+..+..           
T Consensus        42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------  110 (361)
T 2xot_A           42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-----------  110 (361)
T ss_dssp             SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC-----------
Confidence            4799999999988888888 9999999999999999888888999999999999999998876665543           


Q ss_pred             CCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc
Q 048153           80 SLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI  159 (257)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  159 (257)
                                                               +++|++|++++|.+....+..|..+++|++|++++|.++
T Consensus       111 -----------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          111 -----------------------------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence                                                     678999999999999888999999999999999999999


Q ss_pred             cCCCccc---cCccCCCEEEccCCcccccCChhhhcCCC--CCEEEccCCcccC
Q 048153          160 GTIPSTF---SNLKHIESLDLSYNQLNGKIPLQLVELNT--LAVFSVAHNNLSG  208 (257)
Q Consensus       160 ~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~  208 (257)
                      .+.+..+   ..+++|+.|++++|+++...+..+..++.  ++.|++++|.+..
T Consensus       150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            7666666   56899999999999999655567788877  4889999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=1.3e-19  Score=158.34  Aligned_cols=105  Identities=21%  Similarity=0.295  Sum_probs=79.3

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.+...  +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|+
T Consensus       108 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            66788888888887743  3577788888888888888754  567778888888888888875444  77788888888


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      |++|++.+. + .+..+++|+.|++++|++...
T Consensus       182 Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          182 LSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            888888743 3 467788888888888876653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=5.5e-20  Score=138.91  Aligned_cols=154  Identities=18%  Similarity=0.258  Sum_probs=125.6

Q ss_pred             ccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhh
Q 048153           18 VDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYR   97 (257)
Q Consensus        18 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~   97 (257)
                      .+.+++|++|++++|.+. .+| .+..+++|++|++++|.++..  ..+.                              
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~------------------------------   85 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPIS------------------------------   85 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGT------------------------------
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhh------------------------------
Confidence            467788999999999888 445 588888999999998865421  1111                              


Q ss_pred             cccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEc
Q 048153           98 EKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDL  177 (257)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  177 (257)
                                            .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        86 ----------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           86 ----------------------GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             ----------------------TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             ----------------------cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                  1677999999999998777888999999999999999999878888999999999999


Q ss_pred             cCCc-ccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153          178 SYNQ-LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       178 ~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  231 (257)
                      ++|+ ++ .++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.+++++|++-
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            9998 66 455 68889999999999999985 44 6788999999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=2.3e-21  Score=161.33  Aligned_cols=232  Identities=13%  Similarity=0.149  Sum_probs=165.6

Q ss_pred             CEEEcccccccccC----CccccCcccCcEeeCcCC---cccccCChhh-------hCCCCCCeeeccCceeccc----C
Q 048153            1 MILDLSYNRLNGSI----PDLVDGLSQLSHLILAHN---NLEGKVPVQL-------CRLNQLQLLDLSNNNLHGL----I   62 (257)
Q Consensus         1 ~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n---~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~----~   62 (257)
                      ++|+|++|.+++..    +..+..+++|++|++++|   ++.+..|..+       ..+++|++|++++|.+...    .
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  114 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  114 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence            57999999998653    345778999999999996   4444555554       6889999999999998752    2


Q ss_pred             CCCCc-CCcccccccCCCCCCCCcchhhhhhhhhhhcc---------cchhhcccccccccccc------ccccccccce
Q 048153           63 PPCFD-NTTLHESYSNGSSLKPFETSFLVKNIYIYREK---------KILEIFEFTTKNIAYTY------QGRVVSYLSG  126 (257)
Q Consensus        63 ~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~~------~~~~~~~L~~  126 (257)
                      +..+. ...+..+....+.+.......+...   ....         ..++.+.+..+.+....      ....+++|++
T Consensus       115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCHHHHHHHHHHH---HHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHhCCCCCEEECcCCCCCHHHHHHHHHH---HHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence            32222 2345566666665543222222222   1222         56677777777654221      1123668999


Q ss_pred             EEcccCcccc-----ccCCCcCCCCCcCEEeccCCccc----cCCCccccCccCCCEEEccCCccccc----CChhhhc-
Q 048153          127 LDLSCNKLIC-----HISPQIGNLTRIQTLNLSHNDLI----GTIPSTFSNLKHIESLDLSYNQLNGK----IPLQLVE-  192 (257)
Q Consensus       127 L~ls~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~-  192 (257)
                      |++++|.++.     ..+..+..+++|++|++++|.++    ...+..+..+++|+.|++++|++++.    ++..+.. 
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999998872     34447888999999999999985    45677788889999999999999865    3455533 


Q ss_pred             -CCCCCEEEccCCcccC----CCChhh-hhccCCCeeccccCcccccCC
Q 048153          193 -LNTLAVFSVAHNNLSG----KIPEWT-AQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       193 -~~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~~  235 (257)
                       +++|++|++++|.+.+    .+|..+ ..+++|+.|++++|++.+..+
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             8999999999999986    377776 568999999999999887653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.8e-19  Score=155.99  Aligned_cols=180  Identities=23%  Similarity=0.322  Sum_probs=103.2

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.|++++|++++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.++++ |. +.. .+..+....+.
T Consensus        62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~-~L~~L~Ls~N~  131 (571)
T 3cvr_A           62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA-SLKHLDVDNNQ  131 (571)
T ss_dssp             SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT-TCCEEECCSSC
T ss_pred             cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc-CCCEEECCCCc
Confidence            468888888886 56544  378899999999888 555   3467889999999988874 33 433 55555555555


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                      +..++.                                 .+++|++|++++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       132 l~~lp~---------------------------------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          132 LTMLPE---------------------------------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CSCCCC---------------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCCCC---------------------------------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            544332                                 14455555555555553 232   34455555555555554


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCC-------CEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTL-------AVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                       .|. +.  ++|+.|++++|+++ .+|. +..  +|       +.|++++|++. .+|..+..+++|+.|++++|++.+.
T Consensus       175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence             333 33  45555555555555 3333 322  44       55555555555 3454444555555555555555554


Q ss_pred             CCC
Q 048153          234 LPL  236 (257)
Q Consensus       234 ~~~  236 (257)
                      .|.
T Consensus       246 ~p~  248 (571)
T 3cvr_A          246 IRE  248 (571)
T ss_dssp             HHH
T ss_pred             CHH
Confidence            443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=6.2e-19  Score=154.28  Aligned_cols=75  Identities=23%  Similarity=0.224  Sum_probs=39.7

Q ss_pred             cCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCccccccc
Q 048153          170 KHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKA  248 (257)
Q Consensus       170 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~  248 (257)
                      ++|+.|++++|++++ +|   ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.+. .+|..+ ..+.++.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            455566666665553 33   23455666666666555 3333   3455666666666554 445443 2255666666


Q ss_pred             ccCCc
Q 048153          249 STTNK  253 (257)
Q Consensus       249 ~~~~~  253 (257)
                      ++|..
T Consensus       292 ~~N~l  296 (622)
T 3g06_A          292 EGNPL  296 (622)
T ss_dssp             CSCCC
T ss_pred             cCCCC
Confidence            65543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=7.1e-22  Score=164.42  Aligned_cols=239  Identities=13%  Similarity=0.157  Sum_probs=172.8

Q ss_pred             cCCccccCcccCcEeeCcCCcccccCCh----hhhCCCCCCeeeccCcee---cccCCCCC--------cCCcccccccC
Q 048153           13 SIPDLVDGLSQLSHLILAHNNLEGKVPV----QLCRLNQLQLLDLSNNNL---HGLIPPCF--------DNTTLHESYSN   77 (257)
Q Consensus        13 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l---~~~~~~~~--------~~~~l~~~~~~   77 (257)
                      .++..+..+++|++|++++|.+....+.    .+..+++|++|++++|.+   .+..|..+        ....+..+..+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3566788899999999999999865443    366899999999999754   33333222        22345566666


Q ss_pred             CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc------ccc---------cccceEEcccCccc-cccC--
Q 048153           78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG------RVV---------SYLSGLDLSCNKLI-CHIS--  139 (257)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~---------~~L~~L~ls~n~~~-~~~~--  139 (257)
                      .+.+..........   .+.....++.+++..+.+......      ..+         ++|++|++++|.++ ...+  
T Consensus       103 ~n~l~~~~~~~l~~---~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          103 DNAFGPTAQEPLID---FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  179 (386)
T ss_dssp             SCCCCTTTHHHHHH---HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             CCcCCHHHHHHHHH---HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence            66655433222222   234455667777777765422111      112         78999999999986 3333  


Q ss_pred             -CCcCCCCCcCEEeccCCcccc-----CCCccccCccCCCEEEccCCccc----ccCChhhhcCCCCCEEEccCCcccCC
Q 048153          140 -PQIGNLTRIQTLNLSHNDLIG-----TIPSTFSNLKHIESLDLSYNQLN----GKIPLQLVELNTLAVFSVAHNNLSGK  209 (257)
Q Consensus       140 -~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~  209 (257)
                       ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.++    ..+|..+..+++|+.|++++|.+.+.
T Consensus       180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence             356678899999999999883     34447788899999999999995    46777888999999999999999865


Q ss_pred             ----CChhhhh--ccCCCeeccccCcccc----cCCCCC-c-cCcccccccccCCcc
Q 048153          210 ----IPEWTAQ--FATFSESSYEGNHFLC----GLPLPI-C-RSPVTMLKASTTNKE  254 (257)
Q Consensus       210 ----~~~~~~~--~~~L~~l~l~~n~~~~----~~~~~~-~-~~~l~~l~~~~~~~~  254 (257)
                          ++..+..  +++|+.|++++|.+..    .+|..+ . .+.++.|++++|...
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence                4556644  8999999999999887    466655 3 389999999998753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=3.6e-21  Score=157.08  Aligned_cols=129  Identities=19%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             ccccceEEcccC-ccccc-cCCCcCCCC-CcCEEeccCC--ccc-cCCCccccCccCCCEEEccCCc-ccccCChhhhcC
Q 048153          121 VSYLSGLDLSCN-KLICH-ISPQIGNLT-RIQTLNLSHN--DLI-GTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVEL  193 (257)
Q Consensus       121 ~~~L~~L~ls~n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~  193 (257)
                      +++|++|++++| .++.. .+..+..++ +|++|++++|  .++ +..+..+..+++|+.|++++|. +++..+..+..+
T Consensus       167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence            678999999999 77743 456677888 9999999999  454 3456667788999999999998 776777788889


Q ss_pred             CCCCEEEccCCc-ccCCCChhhhhccCCCeeccccCcccccCCCCC---ccCcccccccccCCcc
Q 048153          194 NTLAVFSVAHNN-LSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI---CRSPVTMLKASTTNKE  254 (257)
Q Consensus       194 ~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~l~~l~~~~~~~~  254 (257)
                      ++|++|++++|. +.......++.+++|+.|++++|     ++...   ....+..|+++.|...
T Consensus       247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred             CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCc
Confidence            999999999995 32222235778899999999988     33322   1244777777776554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=6.8e-20  Score=144.55  Aligned_cols=164  Identities=20%  Similarity=0.281  Sum_probs=120.5

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK   82 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~   82 (257)
                      ++++++.+++..  .++.+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..              
T Consensus        24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~--------------   83 (263)
T 1xeu_A           24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKD--------------   83 (263)
T ss_dssp             HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT--------------
T ss_pred             HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hcc--------------
Confidence            456777777443  47888999999999998873 44 67888899999999998875433  221              


Q ss_pred             CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153           83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI  162 (257)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  162 (257)
                                                            +++|++|++++|.+++. +. +.. ++|++|++++|.+++. 
T Consensus        84 --------------------------------------l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-  121 (263)
T 1xeu_A           84 --------------------------------------LTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-  121 (263)
T ss_dssp             --------------------------------------CSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-
T ss_pred             --------------------------------------CCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-
Confidence                                                  56688888888887743 32 233 7788888888888753 


Q ss_pred             CccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          163 PSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       163 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                       +.+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+.  ..+..+++|+.+++++|++.+.
T Consensus       122 -~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 -DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             3577778888888888888743 3 577788888888888888755  5567778888888888887664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.81  E-value=1.6e-18  Score=146.96  Aligned_cols=120  Identities=22%  Similarity=0.289  Sum_probs=55.1

Q ss_pred             cccceEEcccCccccccCCCcCCCCCcCEEeccCCccccC--CCcccc-------------Cc-cCCCEEEccCCccccc
Q 048153          122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGT--IPSTFS-------------NL-KHIESLDLSYNQLNGK  185 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~-------------~~-~~L~~L~l~~n~l~~~  185 (257)
                      ++|++|++++|.+++ +|..   .++|+.|++++|.+++.  .|..+.             .. ++|+.|++++|++++ 
T Consensus       257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-  331 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-  331 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-
T ss_pred             cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-
Confidence            455555555555543 2222   24555566665555541  111110             11 355556666665553 


Q ss_pred             CChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccc--cCCCCCcc--------------Ccccccccc
Q 048153          186 IPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC--GLPLPICR--------------SPVTMLKAS  249 (257)
Q Consensus       186 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~--------------~~l~~l~~~  249 (257)
                      +|..   +++|+.|++++|++. .+|.   .+++|+++++++|++.+  .+|..+..              ..++.|+++
T Consensus       332 lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls  404 (454)
T 1jl5_A          332 LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE  404 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred             cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence            3322   356666666666666 3444   35677777777777666  55554411              456777777


Q ss_pred             cCCc
Q 048153          250 TTNK  253 (257)
Q Consensus       250 ~~~~  253 (257)
                      +|..
T Consensus       405 ~N~l  408 (454)
T 1jl5_A          405 TNPL  408 (454)
T ss_dssp             ----
T ss_pred             CCcC
Confidence            6654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=6.3e-19  Score=154.23  Aligned_cols=103  Identities=24%  Similarity=0.260  Sum_probs=80.6

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|+.|++++|.++ .+|.   .+++|+.|++++|.+++ .|   ..+++|+.|++++|+++ .+|.   .+++|+.|+
T Consensus       200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~  267 (622)
T 3g06_A          200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS  267 (622)
T ss_dssp             CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence            345556666666555 2222   23679999999999986 44   45689999999999999 5555   578999999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +++|.+. .+|..+..+++|+.|++++|++.+..|.
T Consensus       268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            9999999 7788899999999999999998875554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.6e-19  Score=144.55  Aligned_cols=182  Identities=21%  Similarity=0.301  Sum_probs=146.3

Q ss_pred             cccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCC
Q 048153            5 LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPF   84 (257)
Q Consensus         5 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~   84 (257)
                      +..+.+.+..  .++.+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..                
T Consensus        31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~----------------   88 (291)
T 1h6t_A           31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LAN----------------   88 (291)
T ss_dssp             TTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTT----------------
T ss_pred             hcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--ccc----------------
Confidence            3444444332  356789999999999999843 3 48889999999999999876433  211                


Q ss_pred             cchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCc
Q 048153           85 ETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS  164 (257)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  164 (257)
                                                          +++|++|++++|.++.. + .+..+++|++|++++|.+++.  +
T Consensus        89 ------------------------------------l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~  128 (291)
T 1h6t_A           89 ------------------------------------LKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--N  128 (291)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--G
T ss_pred             ------------------------------------CCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCCCcCCCC--h
Confidence                                                67899999999999853 3 489999999999999999964  5


Q ss_pred             cccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCccc
Q 048153          165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVT  244 (257)
Q Consensus       165 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~  244 (257)
                      .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++.+..+  ++.+++|+.|++++|.+.. +|.......++
T Consensus       129 ~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~  203 (291)
T 1h6t_A          129 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLD  203 (291)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCS
T ss_pred             hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCC
Confidence            688899999999999999854  578899999999999999996554  8899999999999998765 45433557899


Q ss_pred             ccccccCCc
Q 048153          245 MLKASTTNK  253 (257)
Q Consensus       245 ~l~~~~~~~  253 (257)
                      .|++++|..
T Consensus       204 ~L~l~~n~i  212 (291)
T 1h6t_A          204 VLELFSQEC  212 (291)
T ss_dssp             EEEEEEEEE
T ss_pred             EEECcCCcc
Confidence            999988753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=3.8e-21  Score=156.98  Aligned_cols=230  Identities=17%  Similarity=0.136  Sum_probs=163.2

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCccccc-CChhhhCCCCCCeeeccCceecccCCCCCcC-CcccccccCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK-VPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~~~~   78 (257)
                      ++|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+.. ..+..+....
T Consensus        73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~  151 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  151 (336)
T ss_dssp             SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence            4689999999976665 56799999999999998765 7778889999999999999887554443332 2344444444


Q ss_pred             C-CCCCCcchhhhhhhhhhhcccchhhcccccc-ccccc---ccccccc-ccceEEcccCc--cc-cccCCCcCCCCCcC
Q 048153           79 S-SLKPFETSFLVKNIYIYREKKILEIFEFTTK-NIAYT---YQGRVVS-YLSGLDLSCNK--LI-CHISPQIGNLTRIQ  149 (257)
Q Consensus        79 ~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~~~~~~~-~L~~L~ls~n~--~~-~~~~~~~~~l~~L~  149 (257)
                      + .+.   ...   ..........++.+++..+ .+...   .....++ +|++|++++|.  ++ ..++..+..+++|+
T Consensus       152 ~~~l~---~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          152 CSGFS---EFA---LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             CBSCC---HHH---HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CCCCC---HHH---HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            3 222   111   1122334456666776666 54431   1223366 99999999994  44 34566677899999


Q ss_pred             EEeccCCc-cccCCCccccCccCCCEEEccCCc-ccccCChhhhcCCCCCEEEccCCcccCCCChhhhhc-cCCCeeccc
Q 048153          150 TLNLSHND-LIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQF-ATFSESSYE  226 (257)
Q Consensus       150 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~l~l~  226 (257)
                      +|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +..   ..+..+ ..+..|+++
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~  301 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQIN  301 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEES
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEe
Confidence            99999999 777778888999999999999995 44333336788999999999999 442   233344 347778899


Q ss_pred             cCcccccCCCCCccC
Q 048153          227 GNHFLCGLPLPICRS  241 (257)
Q Consensus       227 ~n~~~~~~~~~~~~~  241 (257)
                      +|.+.+..|......
T Consensus       302 ~n~l~~~~~~~~~~~  316 (336)
T 2ast_B          302 CSHFTTIARPTIGNK  316 (336)
T ss_dssp             CCCSCCTTCSSCSST
T ss_pred             cccCccccCCccccc
Confidence            999998888766543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=2e-19  Score=135.26  Aligned_cols=114  Identities=25%  Similarity=0.346  Sum_probs=89.3

Q ss_pred             ccceEEcccCccccccCC-CcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153          123 YLSGLDLSCNKLICHISP-QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV  201 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  201 (257)
                      ++++|++++|.+++..+. .+..+++|++|++++|.+++..|.+|..+++|+.|++++|++++..+..+.++++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            577788888887766553 4777888888888888888777778888888888888888888766667777888888888


Q ss_pred             cCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      ++|++.+..|..+..+++|+.+++++|+|.|+|+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            88888877777777788888888888888887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=3e-19  Score=134.89  Aligned_cols=148  Identities=15%  Similarity=0.259  Sum_probs=124.1

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|.+. .+| .++.+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..            
T Consensus        47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------  110 (197)
T 4ezg_A           47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------------  110 (197)
T ss_dssp             CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------------
T ss_pred             cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------------
Confidence            57999999999 455 5999999999999999776  4457899999999999999998655554433            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCc-cc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND-LI  159 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~  159 (257)
                                                              +++|++|++++|.++...+..+..+++|++|++++|. ++
T Consensus       111 ----------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~  150 (197)
T 4ezg_A          111 ----------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT  150 (197)
T ss_dssp             ----------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred             ----------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence                                                    6789999999999997777889999999999999998 77


Q ss_pred             cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccC
Q 048153          160 GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSG  208 (257)
Q Consensus       160 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  208 (257)
                      . .+ .+..+++|+.|++++|++++ .+ .+..+++|+.|++++|++.+
T Consensus       151 ~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          151 D-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             C-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             c-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            4 44 68899999999999999985 44 68889999999999999863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4.6e-19  Score=145.54  Aligned_cols=236  Identities=13%  Similarity=0.094  Sum_probs=155.3

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceeccc-CCCCCcCCc-ccc-cccCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL-IPPCFDNTT-LHE-SYSNG   78 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~-l~~-~~~~~   78 (257)
                      +++.++++++ .+|..+  .+++++|++++|+++...+.+|.++++|++|++++|.+.+. .+..|.... +.. .....
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4667777787 556544  35788888888888866666788888888888888887543 344554433 222 22223


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhcccccccccccccccc--ccccceEEccc-CccccccCCCcCCCC-CcCEEecc
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV--VSYLSGLDLSC-NKLICHISPQIGNLT-RIQTLNLS  154 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~L~~L~ls~-n~~~~~~~~~~~~l~-~L~~L~l~  154 (257)
                      +.+..++..       .+..+..|+.+.+..+.+........  ...+..+++.+ +.+....+..|..+. .++.|+++
T Consensus        90 N~l~~l~~~-------~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           90 NNLLYINPE-------AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             TTCCEECTT-------SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             CcccccCch-------hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            444333221       22344556666666666554433322  34566777765 556656666777765 58889999


Q ss_pred             CCccccCCCccccCccCCCEEEccC-CcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          155 HNDLIGTIPSTFSNLKHIESLDLSY-NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       155 ~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      +|.++.+.+.+|. ..+|+.+++.+ |.++...+..+.++++|+.|++++|+++...+..   +.+|+.|.+.++.-+..
T Consensus       163 ~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          163 KNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK  238 (350)
T ss_dssp             SSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred             cccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence            9999966666654 46788999874 6777444557788999999999999998444433   56677777777766777


Q ss_pred             CCCCCccCcccccccccC
Q 048153          234 LPLPICRSPVTMLKASTT  251 (257)
Q Consensus       234 ~~~~~~~~~l~~l~~~~~  251 (257)
                      +|...-.+.|+.++++++
T Consensus       239 lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          239 LPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCTTTCCSCCEEECSCH
T ss_pred             CCCchhCcChhhCcCCCC
Confidence            775445577787777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.80  E-value=5.2e-19  Score=133.02  Aligned_cols=115  Identities=22%  Similarity=0.315  Sum_probs=104.7

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      .+++++|++++|.++ .+|..|..+++|+.|++++|.++++.+.+|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus        30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            456899999999998 6678899999999999999999988888999999999999999999987788899999999999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +++|++.+..+..+..+++|+.+++++|+|.|+|..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            999999976667788999999999999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=7.1e-19  Score=132.24  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=84.3

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            55677777777777767677777778888888888888777777777778888888888888777777777778888888


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCccccc
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTML  246 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l  246 (257)
                      +++|.+.+..+... ....++...+.++...|..|...-..++..+
T Consensus       133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l  177 (192)
T 1w8a_A          133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKVRDVQIKDL  177 (192)
T ss_dssp             CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTTTTSBGGGS
T ss_pred             eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChHHcCCChhhC
Confidence            88888776544211 1111223344555566666665544444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=1e-20  Score=156.15  Aligned_cols=231  Identities=18%  Similarity=0.145  Sum_probs=165.8

Q ss_pred             CEEEcccccccccCC----ccccCcc-cCcEeeCcCCcccccCChhhhCC-----CCCCeeeccCceecccCCCCCcC--
Q 048153            1 MILDLSYNRLNGSIP----DLVDGLS-QLSHLILAHNNLEGKVPVQLCRL-----NQLQLLDLSNNNLHGLIPPCFDN--   68 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~--   68 (257)
                      ++|||++|.+++..+    +.|+.++ +|++|++++|.+.+..+..+..+     ++|++|++++|.++...+..+..  
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL  104 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence            579999999997666    7788898 99999999999998778777775     89999999999998655442211  


Q ss_pred             ----CcccccccCCCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc-------ccccccceEEcccCccccc
Q 048153           69 ----TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG-------RVVSYLSGLDLSCNKLICH  137 (257)
Q Consensus        69 ----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~L~~L~ls~n~~~~~  137 (257)
                          ..+..+....+.+.......+.......  ...++.++++.+.+......       ...+.|++|++++|.++..
T Consensus       105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL--PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS--CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HhCCCCccEEECcCCcCCcHHHHHHHHHHHhC--CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence                3566677777776555443332222110  13566677777766532211       1124899999999999865


Q ss_pred             cCCC----cCCC-CCcCEEeccCCccccCC----CccccC-ccCCCEEEccCCcccccCCh----hhhcCCCCCEEEccC
Q 048153          138 ISPQ----IGNL-TRIQTLNLSHNDLIGTI----PSTFSN-LKHIESLDLSYNQLNGKIPL----QLVELNTLAVFSVAH  203 (257)
Q Consensus       138 ~~~~----~~~l-~~L~~L~l~~n~l~~~~----~~~~~~-~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~  203 (257)
                      .+..    +..+ ++|++|++++|.+++..    +..+.. .++|+.|++++|.+++..+.    .+..+++|+.|++++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence            5433    3445 59999999999998643    334444 45999999999999865443    345679999999999


Q ss_pred             CcccCCCCh-------hhhhccCCCeeccccCccccc
Q 048153          204 NNLSGKIPE-------WTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       204 n~l~~~~~~-------~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      |.+.+..+.       .+..+++|+.+++++|++...
T Consensus       263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            996644333       344667899999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=3.1e-21  Score=167.47  Aligned_cols=205  Identities=18%  Similarity=0.148  Sum_probs=144.4

Q ss_pred             cCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhc
Q 048153           19 DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYRE   98 (257)
Q Consensus        19 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~   98 (257)
                      ..+++|+.|++++|+++ .+|..++.+++|+.|++++|......+.....         .+...     ..+.....+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~---------~~~~~-----~~~~~l~~l~~  410 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA---------LDPLL-----YEKETLQYFST  410 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------HCTGG-----GHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHh---------ccccc-----CCHHHHHHHHh
Confidence            56889999999999998 78999999999999999776421100100000         00000     00001111111


Q ss_pred             cc-----------chhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCcccc
Q 048153           99 KK-----------ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS  167 (257)
Q Consensus        99 ~~-----------~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  167 (257)
                      +.           .+..+.+..+.+...    ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ ..|..++
T Consensus       411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l----~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          411 LKAVDPMRAAYLDDLRSKFLLENSVLKM----EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             cccCcchhhcccchhhhhhhhccccccc----CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence            11           111122222222111    12358999999999986 565 999999999999999999 6788999


Q ss_pred             CccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC-ChhhhhccCCCeeccccCcccccCCCCC----ccCc
Q 048153          168 NLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGLPLPI----CRSP  242 (257)
Q Consensus       168 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~  242 (257)
                      .+++|+.|++++|++++ +| .+..+++|+.|++++|++.+.. |..++.+++|+.|++++|++.+..|...    ..+.
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            99999999999999995 66 7899999999999999999776 9999999999999999999887655443    1355


Q ss_pred             ccccc
Q 048153          243 VTMLK  247 (257)
Q Consensus       243 l~~l~  247 (257)
                      ++.|+
T Consensus       562 L~~L~  566 (567)
T 1dce_A          562 VSSIL  566 (567)
T ss_dssp             CSEEE
T ss_pred             cCccC
Confidence            66554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=5.6e-19  Score=154.27  Aligned_cols=183  Identities=22%  Similarity=0.326  Sum_probs=148.3

Q ss_pred             EcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCC
Q 048153            4 DLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKP   83 (257)
Q Consensus         4 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~   83 (257)
                      .+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..               
T Consensus        27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~---------------   85 (605)
T 1m9s_A           27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTN---------------   85 (605)
T ss_dssp             HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGG---------------
T ss_pred             hccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hcc---------------
Confidence            345555554433  5788999999999999883 33 58889999999999999875433  111               


Q ss_pred             CcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCC
Q 048153           84 FETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP  163 (257)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  163 (257)
                                                           +++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++.  
T Consensus        86 -------------------------------------l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--  124 (605)
T 1m9s_A           86 -------------------------------------LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--  124 (605)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--
T ss_pred             -------------------------------------CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--
Confidence                                                 6789999999999985 33 689999999999999999953  


Q ss_pred             ccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcc
Q 048153          164 STFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPV  243 (257)
Q Consensus       164 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l  243 (257)
                      +.+..+++|+.|++++|++++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|++++|.+.. +|.....+.|
T Consensus       125 ~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L  199 (605)
T 1m9s_A          125 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNL  199 (605)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTC
T ss_pred             ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCC
Confidence            4688899999999999999854  678899999999999999997666  8899999999999998765 4433355889


Q ss_pred             cccccccCCc
Q 048153          244 TMLKASTTNK  253 (257)
Q Consensus       244 ~~l~~~~~~~  253 (257)
                      +.|+++.|..
T Consensus       200 ~~L~L~~N~l  209 (605)
T 1m9s_A          200 DVLELFSQEC  209 (605)
T ss_dssp             SEEECCSEEE
T ss_pred             CEEEccCCcC
Confidence            9999988754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=2.6e-21  Score=164.52  Aligned_cols=60  Identities=27%  Similarity=0.297  Sum_probs=42.4

Q ss_pred             CEEEcccccccc----cCCccccCcccCcEeeCcCCcccccCChhhhC-----CCCCCeeeccCceecc
Q 048153            1 MILDLSYNRLNG----SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-----LNQLQLLDLSNNNLHG   60 (257)
Q Consensus         1 ~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~   60 (257)
                      ++|++++|++++    .++..++.+++|++|++++|.+.+..+..+..     .++|++|++++|.++.
T Consensus        88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            468899998884    45778888888999999988887544433322     3457777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.4e-18  Score=142.65  Aligned_cols=215  Identities=13%  Similarity=0.064  Sum_probs=147.7

Q ss_pred             cEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCC-cccccccCCCCCCC-Ccchhhhhhhhhhhcccch
Q 048153           25 SHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNT-TLHESYSNGSSLKP-FETSFLVKNIYIYREKKIL  102 (257)
Q Consensus        25 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l  102 (257)
                      +.++.++++++ .+|..+.  +++++|++++|+++.+.++.|... .+..+..+.+.+.. ++...+       ..+..+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-------~~L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-------SNLPKL   81 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-------CSCTTC
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-------hcchhh
Confidence            67889999998 6776653  589999999999998888877665 46677777766532 322211       112221


Q ss_pred             h-hcccccccccccccc--ccccccceEEcccCccccccCCCcCCCCCcCEEeccC-CccccCCCccccCcc-CCCEEEc
Q 048153          103 E-IFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH-NDLIGTIPSTFSNLK-HIESLDL  177 (257)
Q Consensus       103 ~-~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l  177 (257)
                      . ......+.+......  ..+++|++|++++|.+....+..+.....+..+++.+ +.+..+.+.+|..+. .++.|++
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            1 222333333333221  3378899999999999877777777777888888866 568767777777665 6889999


Q ss_pred             cCCcccccCChhhhcCCCCCEEEccC-CcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153          178 SYNQLNGKIPLQLVELNTLAVFSVAH-NNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN  252 (257)
Q Consensus       178 ~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~  252 (257)
                      ++|+++...+..+ ...+|+.+++.+ |.+....+..++.+++|++|++++|.+.. +|... ...++.|....+.
T Consensus       162 ~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~~-~~~L~~L~~l~~~  234 (350)
T 4ay9_X          162 NKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYG-LENLKKLRARSTY  234 (350)
T ss_dssp             CSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSSS-CTTCCEEECTTCT
T ss_pred             ccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChhh-hccchHhhhccCC
Confidence            9999995444444 457899999986 55664444577899999999999998654 66543 4456666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=2.2e-21  Score=164.86  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=53.8

Q ss_pred             CCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhhhc-----CCCCCEEEccCCcccCC----CC
Q 048153          145 LTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQLVE-----LNTLAVFSVAHNNLSGK----IP  211 (257)
Q Consensus       145 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~~----~~  211 (257)
                      +++|++|++++|.++..    .+..+..+++|+.|++++|.+++..+..+..     .++|+.|++++|.+.+.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            44455555555544432    2333334455555555555554332222222     14555555555555533    23


Q ss_pred             hhhhhccCCCeeccccCcccccCCCCCc------cCcccccccccCCc
Q 048153          212 EWTAQFATFSESSYEGNHFLCGLPLPIC------RSPVTMLKASTTNK  253 (257)
Q Consensus       212 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~------~~~l~~l~~~~~~~  253 (257)
                      ..+..+++|++|++++|.+....+..++      .+.++.|++++|..
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            4444556666666666665543332222      35677777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.77  E-value=4.1e-18  Score=126.37  Aligned_cols=115  Identities=22%  Similarity=0.249  Sum_probs=103.2

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            45689999999999977777889999999999999999988778889999999999999999976666788899999999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +++|.+.+..+..+..+++|+.+++++|++.|.||
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999996666667889999999999999999887

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.3e-17  Score=131.54  Aligned_cols=145  Identities=21%  Similarity=0.257  Sum_probs=121.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|++++|+++. ++ .++.+++|++|++++|++++..+  +..+++|++|++++|++++..+..               
T Consensus        44 ~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~---------------  104 (263)
T 1xeu_A           44 QNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---------------  104 (263)
T ss_dssp             SEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC---------------
T ss_pred             cEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc---------------
Confidence            579999999994 45 68999999999999999995444  899999999999999997542211               


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              .++|++|++++|.+++.  +.+..+++|+.|++++|.+++
T Consensus       105 ----------------------------------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          105 ----------------------------------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             ----------------------------------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             ----------------------------------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence                                                    14588999999999854  358899999999999999996


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCC
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKI  210 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  210 (257)
                      .  +.+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+.+..
T Consensus       143 ~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          143 I--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             C--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             C--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            5  3688899999999999999865  66888999999999999998553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=7e-18  Score=124.02  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L  199 (257)
                      +++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.. +..+..+++|++|
T Consensus        48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence            45566777777766644  56677777777777777777656666666777777888777777432 2566777788888


Q ss_pred             EccCCcccCCCC---hhhhhccCCCeeccccCccc
Q 048153          200 SVAHNNLSGKIP---EWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       200 ~L~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~  231 (257)
                      ++++|.+.+..+   ..+..+++|+.+++++|+..
T Consensus       126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            888887775544   46677778888888877643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=2.7e-17  Score=142.36  Aligned_cols=166  Identities=23%  Similarity=0.299  Sum_probs=130.2

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|+|++|+++ .+|   ..+++|++|++++|.+++ +|. ++.  +|++|++++|.++++++   ....+..+....+.
T Consensus        83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  151 (571)
T 3cvr_A           83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ  151 (571)
T ss_dssp             SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc
Confidence            57999999999 566   557999999999999996 666 665  99999999999988544   23334445444444


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                      +..++.                                 .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ 
T Consensus       152 l~~lp~---------------------------------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          152 LTMLPE---------------------------------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSCCCC---------------------------------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             cCcCCC---------------------------------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            443221                                 26789999999999986 565 65  89999999999999 


Q ss_pred             CCCccccCccCC-------CEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccC
Q 048153          161 TIPSTFSNLKHI-------ESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFAT  219 (257)
Q Consensus       161 ~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  219 (257)
                      ..|. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|.+.+.+|..+..+..
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            4555 544  67       99999999999 67888888999999999999999988888877543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=3.9e-17  Score=120.02  Aligned_cols=138  Identities=21%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             CcccCcEeeCcCCccc-ccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhc
Q 048153           20 GLSQLSHLILAHNNLE-GKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYRE   98 (257)
Q Consensus        20 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~   98 (257)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..                              
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------   69 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------   69 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC------------------------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc------------------------------
Confidence            3477888888888887 56677778888888888888888654  22211                              


Q ss_pred             ccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCC-ccccCccCCCEEEc
Q 048153           99 KKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP-STFSNLKHIESLDL  177 (257)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l  177 (257)
                                            +++|++|++++|.+.+.+|..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus        70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                  5678888888888886677777778888888888888886432 67788888888888


Q ss_pred             cCCcccccCC---hhhhcCCCCCEEEccCCcccCCCCh
Q 048153          178 SYNQLNGKIP---LQLVELNTLAVFSVAHNNLSGKIPE  212 (257)
Q Consensus       178 ~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~  212 (257)
                      ++|.+++..+   ..+..+++|+.|++++|.+. ++|.
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            8888885444   36778888888888888887 4443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=4.8e-17  Score=117.13  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=52.9

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccccc-CChhhhcCCCCCEEEc
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGK-IPLQLVELNTLAVFSV  201 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L  201 (257)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++. .+..+..+++|++|++
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            344444444444432  3444555555555555555544444444455566666666655532 1244555566666666


Q ss_pred             cCCcccCCCC---hhhhhccCCCeeccc
Q 048153          202 AHNNLSGKIP---EWTAQFATFSESSYE  226 (257)
Q Consensus       202 ~~n~l~~~~~---~~~~~~~~L~~l~l~  226 (257)
                      ++|.+.+..+   ..+..+++|+.++++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666554443   345555666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=119.87  Aligned_cols=89  Identities=28%  Similarity=0.306  Sum_probs=72.5

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.+++..+..|..+++|++|++++|.++++.+.+|..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            56677888888888777777788888888888888888888788888888888888888888865555678888899999


Q ss_pred             ccCCcccCC
Q 048153          201 VAHNNLSGK  209 (257)
Q Consensus       201 L~~n~l~~~  209 (257)
                      +++|.+...
T Consensus       133 L~~N~~~C~  141 (193)
T 2wfh_A          133 IGANPLYCD  141 (193)
T ss_dssp             CCSSCEECS
T ss_pred             eCCCCeecC
Confidence            998888743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.71  E-value=7.1e-17  Score=118.88  Aligned_cols=109  Identities=23%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             cceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccC
Q 048153          124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH  203 (257)
Q Consensus       124 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  203 (257)
                      .+.+++++|.++. +|..+.  +.|+.|++++|.++++.+..|..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            5788999999884 555443  7899999999999988888899999999999999999976666778899999999999


Q ss_pred             CcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          204 NNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       204 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      |++.+..+..+..+++|+.|++++|+|.|.|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99997767778889999999999999999886

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=5.8e-18  Score=151.17  Aligned_cols=115  Identities=23%  Similarity=0.292  Sum_probs=88.8

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      +++|++|++++|.++ .+|..+..+++|+.|++++|.|+ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            566888888888888 67777888888888888888888 56778888888888888888887 6677788888888888


Q ss_pred             ccCCcccCCCChhhhhcc-CCCeeccccCcccccCCCCC
Q 048153          201 VAHNNLSGKIPEWTAQFA-TFSESSYEGNHFLCGLPLPI  238 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~  238 (257)
                      |++|.+.+.+|..+..+. ....+++++|.+.+.+|..+
T Consensus       323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            888888877777665442 22346677777777666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=2.3e-16  Score=116.93  Aligned_cols=134  Identities=24%  Similarity=0.291  Sum_probs=102.0

Q ss_pred             cCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccch
Q 048153           23 QLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKIL  102 (257)
Q Consensus        23 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  102 (257)
                      ..+.++++++.++ .+|..+  .++|++|++++|.+++..+..+..                                  
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~----------------------------------   50 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDK----------------------------------   50 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTT----------------------------------
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcC----------------------------------
Confidence            3567777777776 344433  257888888888877655444332                                  


Q ss_pred             hhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153          103 EIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL  182 (257)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  182 (257)
                                        +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus        51 ------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           51 ------------------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             ------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence                              56688888888888866666778888999999999999877777788888999999999999


Q ss_pred             cccCChhhhcCCCCCEEEccCCcccCCCC
Q 048153          183 NGKIPLQLVELNTLAVFSVAHNNLSGKIP  211 (257)
Q Consensus       183 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  211 (257)
                      ++..+..+..+++|++|++++|.+.+..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            86555566788999999999999886554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=8.6e-17  Score=115.80  Aligned_cols=128  Identities=13%  Similarity=0.107  Sum_probs=109.7

Q ss_pred             ccccceEEcccCccc-cccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEE
Q 048153          121 VSYLSGLDLSCNKLI-CHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  199 (257)
                      .+++++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            578999999999998 67788889999999999999999966  778899999999999999997678888889999999


Q ss_pred             EccCCcccCC-CChhhhhccCCCeeccccCcccccCC---CCC-ccCccccccccc
Q 048153          200 SVAHNNLSGK-IPEWTAQFATFSESSYEGNHFLCGLP---LPI-CRSPVTMLKAST  250 (257)
Q Consensus       200 ~L~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~-~~~~l~~l~~~~  250 (257)
                      ++++|++.+. .+..+..+++|+++++++|++....+   ..+ ..+.++.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999853 34788899999999999999776433   122 457888888864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=2.2e-16  Score=128.52  Aligned_cols=222  Identities=12%  Similarity=0.091  Sum_probs=151.5

Q ss_pred             CEEEccccccc--------------------ccCCccccC--------cccCcEeeCcCCcccccCChhhhCCCCCCeee
Q 048153            1 MILDLSYNRLN--------------------GSIPDLVDG--------LSQLSHLILAHNNLEGKVPVQLCRLNQLQLLD   52 (257)
Q Consensus         1 ~~L~L~~n~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   52 (257)
                      ++|||++|++.                    .+.+.+|.+        +++|+.+++.+ .++.+...+|.++++|+.++
T Consensus        52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~  130 (329)
T 3sb4_A           52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ  130 (329)
T ss_dssp             CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred             eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence            47899999988                    344567888        99999999999 88877888899999999999


Q ss_pred             ccCceecccCCCCCcCCc-ccccccCCC----CCCCCcchhhh--hhhh-----------------hhhcccchhhcccc
Q 048153           53 LSNNNLHGLIPPCFDNTT-LHESYSNGS----SLKPFETSFLV--KNIY-----------------IYREKKILEIFEFT  108 (257)
Q Consensus        53 l~~n~l~~~~~~~~~~~~-l~~~~~~~~----~l~~~~~~~~~--~~~~-----------------~~~~~~~l~~~~~~  108 (257)
                      +.+|.+..+.+..|..+. +..+.....    ....+....+.  ....                 .......+..+...
T Consensus       131 l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~  210 (329)
T 3sb4_A          131 IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIE  210 (329)
T ss_dssp             BCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEE
T ss_pred             cCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEe
Confidence            999998878777776643 111111110    00000000000  0000                 00000001111111


Q ss_pred             ccccc--cccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCC-EEEccCCccccc
Q 048153          109 TKNIA--YTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIE-SLDLSYNQLNGK  185 (257)
Q Consensus       109 ~~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~  185 (257)
                      ..-..  .......+++|+++++++|.++.+.+..|.++++|+.+++.+| ++.+...+|.++.+|+ .+++.+ .++..
T Consensus       211 ~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I  288 (329)
T 3sb4_A          211 GKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI  288 (329)
T ss_dssp             ECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred             eeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence            00000  0000012578999999998888788888999999999999988 7778888999999999 999988 67766


Q ss_pred             CChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecc
Q 048153          186 IPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSY  225 (257)
Q Consensus       186 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l  225 (257)
                      .+.+|.++++|+.+++++|.+....+..+.++++|+.+..
T Consensus       289 ~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          289 EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            7788999999999999999998777788889999988753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.68  E-value=1.8e-16  Score=117.40  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCCh--hhhcCCCCCEEE
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL--QLVELNTLAVFS  200 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~  200 (257)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            455555555555533  34555666666666666666544444456666666666666665 3333  555666666666


Q ss_pred             ccCCcccCCCCh----hhhhccCCCeeccccCcc
Q 048153          201 VAHNNLSGKIPE----WTAQFATFSESSYEGNHF  230 (257)
Q Consensus       201 L~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~  230 (257)
                      +++|.+. ..|.    .+..+++|+.+++++|+.
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666665 3333    255666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.68  E-value=2.5e-16  Score=116.31  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             cceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccC
Q 048153          124 LSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAH  203 (257)
Q Consensus       124 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  203 (257)
                      -+.+++++|.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+.++++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            356788888886 4555443  7788889999988887788888888899999999988865555677888899999999


Q ss_pred             CcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          204 NNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       204 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      |++.+..+..+..+++|+.|++++|+|.|.|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            98886666668888889999999998888775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=3.3e-16  Score=139.86  Aligned_cols=143  Identities=24%  Similarity=0.284  Sum_probs=94.7

Q ss_pred             CccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhh
Q 048153           15 PDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIY   94 (257)
Q Consensus        15 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~   94 (257)
                      +..|..+++|+.|+|++|.+. .+|..+..+++|++|++++|.++ ..|..+..                          
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------  268 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN--------------------------  268 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG--------------------------
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC--------------------------
Confidence            455566666666666666665 44444556666666666666665 22322211                          


Q ss_pred             hhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCE
Q 048153           95 IYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIES  174 (257)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  174 (257)
                                                +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..|..+++|+.
T Consensus       269 --------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          269 --------------------------LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF  320 (727)
T ss_dssp             --------------------------GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC
T ss_pred             --------------------------CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccE
Confidence                                      677899999999988 66888899999999999999988 56777888999999


Q ss_pred             EEccCCcccccCChhhhcCC-CCCEEEccCCcccCCCChh
Q 048153          175 LDLSYNQLNGKIPLQLVELN-TLAVFSVAHNNLSGKIPEW  213 (257)
Q Consensus       175 L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~  213 (257)
                      |++++|.+++..|..+.... .+..+++++|.+.+.+|..
T Consensus       321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            99999999877776664321 1123556666666555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=7e-16  Score=114.18  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=110.3

Q ss_pred             cccCcccCcEeeCcCCcccccCChhhhCCC-CCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhh
Q 048153           17 LVDGLSQLSHLILAHNNLEGKVPVQLCRLN-QLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYI   95 (257)
Q Consensus        17 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~   95 (257)
                      .+..+.+|+.|++++|.++. ++. +..+. +|++|++++|.+++.  ..+..                           
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~---------------------------   62 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPL---------------------------   62 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCC---------------------------
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccccc---------------------------
Confidence            47788999999999999984 454 55555 999999999999864  22221                           


Q ss_pred             hhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCc--cccCccCCC
Q 048153           96 YREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS--TFSNLKHIE  173 (257)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~  173 (257)
                                               +++|++|++++|.+++..+..+..+++|++|++++|.++. .+.  .+..+++|+
T Consensus        63 -------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           63 -------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLT  116 (176)
T ss_dssp             -------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred             -------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCC
Confidence                                     6789999999999997655556899999999999999984 444  788899999


Q ss_pred             EEEccCCcccccCChh----hhcCCCCCEEEccCCccc
Q 048153          174 SLDLSYNQLNGKIPLQ----LVELNTLAVFSVAHNNLS  207 (257)
Q Consensus       174 ~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~  207 (257)
                      .|++++|.++ ..|..    +..+++|+.||+++|...
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999998 55654    889999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=6.6e-17  Score=140.39  Aligned_cols=197  Identities=18%  Similarity=0.199  Sum_probs=146.6

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCc-------------ccccCChhhhCCCCCCeee-ccCceecccCCCCCc
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNN-------------LEGKVPVQLCRLNQLQLLD-LSNNNLHGLIPPCFD   67 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~   67 (257)
                      .|+|++|+++ .+|+.++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.......+.
T Consensus       353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~  431 (567)
T 1dce_A          353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  431 (567)
T ss_dssp             SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhh
Confidence            5889999998 789999999999999998775             4556777888888899888 666654321100000


Q ss_pred             CCcccccccCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCC
Q 048153           68 NTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTR  147 (257)
Q Consensus        68 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~  147 (257)
                      .          +            .+... ....++.++++.+.+........+++|++|++++|.++ .+|..+..+++
T Consensus       432 ~----------n------------~i~~l-~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  487 (567)
T 1dce_A          432 E----------N------------SVLKM-EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC  487 (567)
T ss_dssp             H----------H------------HHHHH-HHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             c----------c------------ccccc-CccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCC
Confidence            0          0            00000 00113344444444433333334788999999999999 77889999999


Q ss_pred             cCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEEEccCCcccCCCCh---hhhhccCCCee
Q 048153          148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVFSVAHNNLSGKIPE---WTAQFATFSES  223 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~l  223 (257)
                      |+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+.+.+|.   ....+++|+.|
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            9999999999996 45 8899999999999999999765 89999999999999999999976553   34458999988


Q ss_pred             cc
Q 048153          224 SY  225 (257)
Q Consensus       224 ~l  225 (257)
                      ++
T Consensus       566 ~l  567 (567)
T 1dce_A          566 LT  567 (567)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.63  E-value=5.4e-18  Score=128.04  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=114.5

Q ss_pred             ccCcccCcEeeCcCCcccccCCh------hhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhh
Q 048153           18 VDGLSQLSHLILAHNNLEGKVPV------QLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVK   91 (257)
Q Consensus        18 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~   91 (257)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.++++ | .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cccc-----------------------
Confidence            45556777777887777766665      788888888888888888752 2 2211                       


Q ss_pred             hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccC
Q 048153           92 NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKH  171 (257)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  171 (257)
                                                   +++|++|++++|.++ .+|..+..+++|+.|++++|.+++. + .+..+++
T Consensus        69 -----------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~  116 (198)
T 1ds9_A           69 -----------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN  116 (198)
T ss_dssp             -----------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred             -----------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence                                         567888888888887 5566666678888999998888853 3 5777888


Q ss_pred             CCEEEccCCcccccCC-hhhhcCCCCCEEEccCCcccCCCCh----------hhhhccCCCeeccccCccc
Q 048153          172 IESLDLSYNQLNGKIP-LQLVELNTLAVFSVAHNNLSGKIPE----------WTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       172 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~l~l~~n~~~  231 (257)
                      |+.|++++|++++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.++  +|++.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9999999998874332 4677888899999999988765443          367788888886  66654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=2.2e-17  Score=124.72  Aligned_cols=148  Identities=24%  Similarity=0.293  Sum_probs=119.5

Q ss_pred             EEEcccccccccCCc------cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccc
Q 048153            2 ILDLSYNRLNGSIPD------LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESY   75 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~   75 (257)
                      .++++.+.+.+..|.      .++.+++|++|++++|.+++ +| .+..+++|++|++++|.++.+ |..+.        
T Consensus        22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~--------   90 (198)
T 1ds9_A           22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA--------   90 (198)
T ss_dssp             CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHH--------
T ss_pred             CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhh--------
Confidence            356777888877776      89999999999999999995 56 889999999999999999742 22111        


Q ss_pred             cCCCCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccC
Q 048153           76 SNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSH  155 (257)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~  155 (257)
                                                                  .+++|++|++++|.+++. | .+..+++|++|++++
T Consensus        91 --------------------------------------------~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           91 --------------------------------------------VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             --------------------------------------------HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESE
T ss_pred             --------------------------------------------cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCC
Confidence                                                        146799999999999864 4 578889999999999


Q ss_pred             CccccCCC-ccccCccCCCEEEccCCcccccCCh----------hhhcCCCCCEEEccCCcccC
Q 048153          156 NDLIGTIP-STFSNLKHIESLDLSYNQLNGKIPL----------QLVELNTLAVFSVAHNNLSG  208 (257)
Q Consensus       156 n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~L~L~~n~l~~  208 (257)
                      |.+++..+ ..+..+++|+.|++++|.+.+..|.          .+..+++|+.||  ++.+..
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99996443 5788899999999999999765443          378899999997  777763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=6.6e-14  Score=102.88  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      .+.+++|++++|.+++..|..|..+++|++|++++|.++++.+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            35689999999999988899999999999999999999988888899999999999999999976666789999999999


Q ss_pred             ccCCcccCCC
Q 048153          201 VAHNNLSGKI  210 (257)
Q Consensus       201 L~~n~l~~~~  210 (257)
                      +++|.+....
T Consensus       109 L~~N~~~c~c  118 (170)
T 3g39_A          109 LLNNPWDCAC  118 (170)
T ss_dssp             CCSSCBCTTB
T ss_pred             eCCCCCCCCc
Confidence            9999998554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.55  E-value=2e-14  Score=117.67  Aligned_cols=108  Identities=16%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             ceEEcccC-ccccccCCCcCCCCCcCEEeccC-CccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEcc
Q 048153          125 SGLDLSCN-KLICHISPQIGNLTRIQTLNLSH-NDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVA  202 (257)
Q Consensus       125 ~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  202 (257)
                      ..++++++ .++ .+|. +..+++|+.|++++ |.++++.+..|..+++|+.|++++|++++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 777 4566 88888899999986 88988777888889999999999999988778888889999999999


Q ss_pred             CCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          203 HNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       203 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +|++.+..+..+..++ |+.|++.+|+|.|+|.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            9999866555555554 9999999999988876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=1e-13  Score=102.27  Aligned_cols=89  Identities=20%  Similarity=0.205  Sum_probs=80.7

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      .++|++|++++|.+++..|..|..+++|+.|++++|.++++.+..|..+++|+.|++++|++++..+..+..+++|++|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            35689999999999988899999999999999999999988777889999999999999999966566689999999999


Q ss_pred             ccCCcccCC
Q 048153          201 VAHNNLSGK  209 (257)
Q Consensus       201 L~~n~l~~~  209 (257)
                      +++|.+...
T Consensus       112 L~~N~~~c~  120 (174)
T 2r9u_A          112 LYNNPWDCE  120 (174)
T ss_dssp             CCSSCBCTT
T ss_pred             eCCCCcccc
Confidence            999999844

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=3.2e-16  Score=137.08  Aligned_cols=57  Identities=9%  Similarity=0.077  Sum_probs=26.4

Q ss_pred             CEEEccccccccc----CCccccCcccCcEeeCcCCcccc----cCChhhhCCCCCCeeeccCce
Q 048153            1 MILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLEG----KVPVQLCRLNQLQLLDLSNNN   57 (257)
Q Consensus         1 ~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~   57 (257)
                      ++|+|++|.+++.    ++..+..+++|++|++++|.+.+    ..+..+..+++|++|++++|.
T Consensus       167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            3566666665433    22233445555555555555431    222223344555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.49  E-value=6.9e-16  Score=134.99  Aligned_cols=108  Identities=11%  Similarity=0.024  Sum_probs=50.9

Q ss_pred             CCCcCEEeccCCccccCCCccccC-ccCCCEEEcc----CCccccc-----CChhhhcCCCCCEEEccCCc--ccCCCCh
Q 048153          145 LTRIQTLNLSHNDLIGTIPSTFSN-LKHIESLDLS----YNQLNGK-----IPLQLVELNTLAVFSVAHNN--LSGKIPE  212 (257)
Q Consensus       145 l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~  212 (257)
                      +++|++|++..|.+++..+..+.. +++|+.|+++    .|++++.     ++..+.++++|+.|+++.|.  +.+..+.
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            444444444444444333333332 4455555553    3444431     11223445555555554332  3333333


Q ss_pred             hhhh-ccCCCeeccccCcccc-cCCCCC-ccCcccccccccCC
Q 048153          213 WTAQ-FATFSESSYEGNHFLC-GLPLPI-CRSPVTMLKASTTN  252 (257)
Q Consensus       213 ~~~~-~~~L~~l~l~~n~~~~-~~~~~~-~~~~l~~l~~~~~~  252 (257)
                      .+.. +++|+.|++++|.+.. .++... ..+.|+.|++++|.
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            3332 5667777777666543 122111 22667777777775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=3.6e-13  Score=109.47  Aligned_cols=202  Identities=10%  Similarity=0.068  Sum_probs=133.5

Q ss_pred             cccCcEeeCcCCccc--------------------ccCChhhhC--------CCCCCeeeccCceecccCCCCCcCCc-c
Q 048153           21 LSQLSHLILAHNNLE--------------------GKVPVQLCR--------LNQLQLLDLSNNNLHGLIPPCFDNTT-L   71 (257)
Q Consensus        21 l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~-l   71 (257)
                      +++|+.|+|++|++.                    .....+|.+        +++|+.+++.+ .++.+.+..|..+. +
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999999988                    234456777        89999999988 78777778787654 6


Q ss_pred             cccccCCCCCCCCcchhhhhhhhhhhcccchhhccccc-------cccccc-c------------------------ccc
Q 048153           72 HESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTT-------KNIAYT-Y------------------------QGR  119 (257)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~-~------------------------~~~  119 (257)
                      ..+....+.+..+....+....       .+..+....       ..+... +                        ...
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~-------~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~  199 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSV-------TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL  199 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTT-------CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred             ceEEcCCCCccccchhhhcCCC-------ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence            6666666665544443332110       011111100       000000 0                        000


Q ss_pred             cccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCC-E
Q 048153          120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLA-V  198 (257)
Q Consensus       120 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~  198 (257)
                      ...++..+.+.++-...........+++|+.+++++|.++.+...+|.++.+|+.+++.+| ++.....+|.++++|+ .
T Consensus       200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence            1223333433332111010001113789999999999999888889999999999999998 7767778899999999 9


Q ss_pred             EEccCCcccCCCChhhhhccCCCeeccccCcccc
Q 048153          199 FSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLC  232 (257)
Q Consensus       199 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  232 (257)
                      +++.+ .+....+.++.+|++|+.+++++|.+..
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            99998 7776777899999999999998887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=4.7e-12  Score=105.43  Aligned_cols=232  Identities=11%  Similarity=0.039  Sum_probs=144.6

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK   82 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~   82 (257)
                      +++..+ +..+...+|.++ +|+.+.+.. .+......+|.++++|+.+++.+|.++.+....|....+..+... ..+.
T Consensus       140 i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~  215 (401)
T 4fdw_A          140 VVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLK  215 (401)
T ss_dssp             EECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCC
T ss_pred             EEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-Cchh
Confidence            444333 554556667764 677777775 555566677888888888888888888777777765544444332 1222


Q ss_pred             CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccc---
Q 048153           83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLI---  159 (257)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---  159 (257)
                      .+....       +.....|+.+.+..+-.........-..|+.+.+. +.+......+|.++++|+.+.+.+|.+.   
T Consensus       216 ~I~~~a-------F~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          216 EIGSQA-------FLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             EECTTT-------TTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             eehhhH-------hhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            222211       11112233333322210000111112468888884 4566577788899999999998887664   


Q ss_pred             --cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153          160 --GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP  237 (257)
Q Consensus       160 --~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  237 (257)
                        .+...+|.++++|+.+.+.+ .++.....+|.++.+|+.+.+..+ +......++..+ +|+.+.+.+|....-.+..
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~  364 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV  364 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred             ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence              46777888889999999985 466566778888899999999655 665666778888 8999999988654422222


Q ss_pred             C--ccCcccccccc
Q 048153          238 I--CRSPVTMLKAS  249 (257)
Q Consensus       238 ~--~~~~l~~l~~~  249 (257)
                      +  |...++.+.+-
T Consensus       365 F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          365 WYGFPDDITVIRVP  378 (401)
T ss_dssp             CCCSCTTCCEEEEC
T ss_pred             ccCCCCCccEEEeC
Confidence            2  33445555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=1.4e-12  Score=106.73  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=92.7

Q ss_pred             ccccceEEccc-CccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEE
Q 048153          121 VSYLSGLDLSC-NKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  199 (257)
                      +++|++|++++ |.+++..+..|..+++|+.|+|++|.|+++.+.+|..+++|+.|+|++|++++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            56799999996 999988888999999999999999999999999999999999999999999966666666655 9999


Q ss_pred             EccCCcccCCCC-hhhhhccCCCeeccccCcccccCCC
Q 048153          200 SVAHNNLSGKIP-EWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       200 ~L~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      ++++|.+...-. ..+..........+..+.+.|..|.
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            999999985433 2333333344455566777776665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=4.8e-15  Score=122.31  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=20.2

Q ss_pred             ccCcEeeCcCCcccccCChhhhCC-----CCCCeeeccCceec
Q 048153           22 SQLSHLILAHNNLEGKVPVQLCRL-----NQLQLLDLSNNNLH   59 (257)
Q Consensus        22 ~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~   59 (257)
                      ++|+.|++++|.++......+...     ++|++|++++|.+.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  114 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD  114 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence            456666666666654333333222     45666666666553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=3.1e-14  Score=117.44  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             ccceEEcccCcccc----ccCCCcCCCCCcCEEeccCCccccCC----CccccCccCCCEEEccCCcccccC----Chhh
Q 048153          123 YLSGLDLSCNKLIC----HISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHIESLDLSYNQLNGKI----PLQL  190 (257)
Q Consensus       123 ~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~  190 (257)
                      .|++|++++|.++.    .++..+..++.|++|++++|.++...    ...+...++|+.|++++|.+++..    +..+
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L  235 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA  235 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence            34555555554432    11222233444555555555444221    222333344555555555444321    1222


Q ss_pred             hcCCCCCEEEccCCccc
Q 048153          191 VELNTLAVFSVAHNNLS  207 (257)
Q Consensus       191 ~~~~~L~~L~L~~n~l~  207 (257)
                      ...++|++|+|++|.+.
T Consensus       236 ~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          236 REHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHCSSCCEEECTTSSCC
T ss_pred             HhCCCCCEEeccCCCCC
Confidence            23344555555555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.31  E-value=4.7e-11  Score=99.40  Aligned_cols=214  Identities=7%  Similarity=-0.004  Sum_probs=150.8

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~   80 (257)
                      .+.+.. .+..+.+.+|.+|++|+.+++.+|.++.....+|. ..+|+.+.+..+ ++.+....|..+. +..+.... .
T Consensus       161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~  236 (401)
T 4fdw_A          161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-N  236 (401)
T ss_dssp             EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-T
T ss_pred             EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-C
Confidence            355553 56667778999999999999999999866666676 588999999855 6667777776664 44444332 2


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhcccccccccccccc--ccccccceEEcccCccc-----cccCCCcCCCCCcCEEec
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG--RVVSYLSGLDLSCNKLI-----CHISPQIGNLTRIQTLNL  153 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~-----~~~~~~~~~l~~L~~L~l  153 (257)
                      +..+....+..        ..++.+.+..+ +......  ..+++|+.+.+.++...     ...+..|.++++|+.+.+
T Consensus       237 l~~I~~~aF~~--------~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          237 VSTIGQEAFRE--------SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             CCEECTTTTTT--------CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             ccCcccccccc--------CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            33222222211        12222222211 1111111  22678999999887664     466789999999999999


Q ss_pred             cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc-CCCeeccccCccc
Q 048153          154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA-TFSESSYEGNHFL  231 (257)
Q Consensus       154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~  231 (257)
                      . +.++.+...+|.++.+|+.+.+..+ ++.....+|.++ +|+.+++++|.+....+..+..++ +++.+.+..+.+.
T Consensus       308 ~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          308 P-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             C-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             C-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            9 4588788889999999999999765 665677889998 999999999998866667777774 7888888877544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.29  E-value=2.5e-13  Score=118.73  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=27.2

Q ss_pred             EEEcccc-ccccc-CCccccCcccCcEeeCcCCcccccCChhhh----CCCCCCeeeccCce
Q 048153            2 ILDLSYN-RLNGS-IPDLVDGLSQLSHLILAHNNLEGKVPVQLC----RLNQLQLLDLSNNN   57 (257)
Q Consensus         2 ~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~   57 (257)
                      +|+|++| .++.. ++..+..+++|++|++++|.+++..+..+.    .+++|++|++++|.
T Consensus       134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            4556555 33321 233334566666666666655543332222    34455555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.24  E-value=7.9e-13  Score=115.60  Aligned_cols=64  Identities=16%  Similarity=0.192  Sum_probs=43.5

Q ss_pred             CccccCccCCCEEEccCCcccccCCh-hhhcCCCCCEEEccCCcccCC-CChhhhhccCCCeecccc
Q 048153          163 PSTFSNLKHIESLDLSYNQLNGKIPL-QLVELNTLAVFSVAHNNLSGK-IPEWTAQFATFSESSYEG  227 (257)
Q Consensus       163 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~l~l~~  227 (257)
                      +..+..+++|+.|++++|.+++.... .+..+++|++|++++| +.+. ++.....+++|++|++.+
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence            33334678899999999987644332 3457899999999988 4422 223334588999998844

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.2e-09  Score=89.48  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=53.1

Q ss_pred             CCCCcCEEeccCCccccCCCccc---cCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCCCChhhhh
Q 048153          144 NLTRIQTLNLSHNDLIGTIPSTF---SNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGKIPEWTAQ  216 (257)
Q Consensus       144 ~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  216 (257)
                      .+++|++|++.+|.+.+.....+   ..+++|++|+++.|.+.+..    +..+..+++|+.|++++|.+.+..-..++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            46788888888887764332222   24678888888888877532    223345678888888888776443333333


Q ss_pred             ccCCCeeccccCc
Q 048153          217 FATFSESSYEGNH  229 (257)
Q Consensus       217 ~~~L~~l~l~~n~  229 (257)
                      .- ..++++++++
T Consensus       330 al-g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL-PMKIDVSDSQ  341 (362)
T ss_dssp             HC-CSEEECCSBC
T ss_pred             Hc-CCEEEecCCc
Confidence            11 3567777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=1.3e-09  Score=89.29  Aligned_cols=162  Identities=13%  Similarity=0.139  Sum_probs=101.8

Q ss_pred             CccccCcccCcEeeCcCCccc---------ccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCc
Q 048153           15 PDLVDGLSQLSHLILAHNNLE---------GKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFE   85 (257)
Q Consensus        15 ~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~   85 (257)
                      .++...+++|+.|.+......         +.+...+..+|+|+.|.++++.-.. .+. +.                  
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~------------------  191 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-KP------------------  191 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-CB------------------
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-cc------------------
Confidence            345667889999988765331         1233456788999999998872100 110 00                  


Q ss_pred             chhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCc--CCCCCcCEEeccC--CccccC
Q 048153           86 TSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQI--GNLTRIQTLNLSH--NDLIGT  161 (257)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~--~~l~~L~~L~l~~--n~l~~~  161 (257)
                                                         .++|++|++..+.+.......+  ..+++|++|+++.  +...+.
T Consensus       192 -----------------------------------~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          192 -----------------------------------RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             -----------------------------------CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             -----------------------------------CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence                                               4567888887776643222222  2577888888753  111111


Q ss_pred             -----CCccc--cCccCCCEEEccCCcccccCChhhh---cCCCCCEEEccCCcccCC----CChhhhhccCCCeecccc
Q 048153          162 -----IPSTF--SNLKHIESLDLSYNQLNGKIPLQLV---ELNTLAVFSVAHNNLSGK----IPEWTAQFATFSESSYEG  227 (257)
Q Consensus       162 -----~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~l~l~~  227 (257)
                           ....+  ..+++|+.|++++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++
T Consensus       237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence                 11122  2468999999999988754433343   467899999999988753    334445678999999998


Q ss_pred             Cccc
Q 048153          228 NHFL  231 (257)
Q Consensus       228 n~~~  231 (257)
                      |.+.
T Consensus       317 n~i~  320 (362)
T 2ra8_A          317 NYLS  320 (362)
T ss_dssp             BBCC
T ss_pred             CcCC
Confidence            8765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=2.9e-09  Score=79.06  Aligned_cols=111  Identities=11%  Similarity=0.124  Sum_probs=83.2

Q ss_pred             ccccceEEcccC-cccc----ccCCCcCCCCCcCEEeccCCccccCC----CccccCccCCCEEEccCCccccc----CC
Q 048153          121 VSYLSGLDLSCN-KLIC----HISPQIGNLTRIQTLNLSHNDLIGTI----PSTFSNLKHIESLDLSYNQLNGK----IP  187 (257)
Q Consensus       121 ~~~L~~L~ls~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~  187 (257)
                      .+.|++|++++| .+..    .+...+...+.|++|++++|.+....    ...+...++|++|++++|.+.+.    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            567999999998 7752    23345666788999999999987533    33445557899999999999864    34


Q ss_pred             hhhhcCCCCCEEEc--cCCcccCCC----ChhhhhccCCCeeccccCccc
Q 048153          188 LQLVELNTLAVFSV--AHNNLSGKI----PEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       188 ~~~~~~~~L~~L~L--~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~  231 (257)
                      ..+...++|++|++  ++|.+...-    ...+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            55666789999999  889987543    344555689999999999764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.66  E-value=1.1e-08  Score=74.47  Aligned_cols=83  Identities=11%  Similarity=0.113  Sum_probs=41.1

Q ss_pred             CcCEEeccCCccccCCCccccCccCCCEEEccCCc-ccccCChhhhcC----CCCCEEEccCCc-ccCCCChhhhhccCC
Q 048153          147 RIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ-LNGKIPLQLVEL----NTLAVFSVAHNN-LSGKIPEWTAQFATF  220 (257)
Q Consensus       147 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~~~~L  220 (257)
                      .|++|++++|.++...-..+..+++|+.|++++|. +++.....+..+    ++|++|++++|. +++.--..++.+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555554444444555555555555553 444333333332    245555555553 443333344455555


Q ss_pred             CeeccccCc
Q 048153          221 SESSYEGNH  229 (257)
Q Consensus       221 ~~l~l~~n~  229 (257)
                      +.|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=9.5e-09  Score=80.28  Aligned_cols=79  Identities=23%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             CCCCcCEEeccCCccccC--CCccccCccCCCEEEccCCcccccCChhhhcCC--CCCEEEccCCcccCCCC-------h
Q 048153          144 NLTRIQTLNLSHNDLIGT--IPSTFSNLKHIESLDLSYNQLNGKIPLQLVELN--TLAVFSVAHNNLSGKIP-------E  212 (257)
Q Consensus       144 ~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~-------~  212 (257)
                      .+++|+.|++++|.++++  .+..+..+++|+.|++++|++++.  ..+..+.  +|+.|+|++|.+.+..|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            355666666666666642  234445566666666666666543  1222222  66666666666654443       1


Q ss_pred             hhhhccCCCeec
Q 048153          213 WTAQFATFSESS  224 (257)
Q Consensus       213 ~~~~~~~L~~l~  224 (257)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            244556666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.61  E-value=1.1e-06  Score=72.81  Aligned_cols=86  Identities=9%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccC
Q 048153          140 PQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFAT  219 (257)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  219 (257)
                      ..|..+.+|+.+.+..+ ++.+...+|..+.+|+.+++..+ ++.....+|.++.+|+.+++..+ +...-..++.+|.+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            45666777777777544 55466667777777887777654 55455667777778888877766 55455567777778


Q ss_pred             CCeeccccC
Q 048153          220 FSESSYEGN  228 (257)
Q Consensus       220 L~~l~l~~n  228 (257)
                      |+.+.+..+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            887777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.57  E-value=1.4e-08  Score=79.32  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=74.8

Q ss_pred             cCCCCCcCE--EeccCCccc---cCCCccccCccCCCEEEccCCcccc--cCChhhhcCCCCCEEEccCCcccCCCChhh
Q 048153          142 IGNLTRIQT--LNLSHNDLI---GTIPSTFSNLKHIESLDLSYNQLNG--KIPLQLVELNTLAVFSVAHNNLSGKIPEWT  214 (257)
Q Consensus       142 ~~~l~~L~~--L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  214 (257)
                      +...+.|+.  ++++.|...   .........++.|+.|++++|++++  .++..+..+++|+.|+|++|++.+.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            333444444  566666433   2222222467899999999999996  3456677899999999999999965  334


Q ss_pred             hhcc--CCCeeccccCcccccCCCC-------C-ccCccccccccc
Q 048153          215 AQFA--TFSESSYEGNHFLCGLPLP-------I-CRSPVTMLKAST  250 (257)
Q Consensus       215 ~~~~--~L~~l~l~~n~~~~~~~~~-------~-~~~~l~~l~~~~  250 (257)
                      ..+.  +|++|++++|++...+|..       + ..+.|+.||...
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence            4454  9999999999987766632       1 557788887654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=1.3e-08  Score=75.45  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             CCCcCCCCCcCEEeccCC-ccccC----CCccccCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCC
Q 048153          139 SPQIGNLTRIQTLNLSHN-DLIGT----IPSTFSNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGK  209 (257)
Q Consensus       139 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~  209 (257)
                      ...+...+.|++|++++| .+...    ....+...++|++|++++|.+.+..    ...+...++|++|+|++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667889999999999 88753    2344556689999999999997543    34455668999999999999854


Q ss_pred             ----CChhhhhccCCCeecc--ccCcccccCCCCC-----ccCcccccccccCCc
Q 048153          210 ----IPEWTAQFATFSESSY--EGNHFLCGLPLPI-----CRSPVTMLKASTTNK  253 (257)
Q Consensus       210 ----~~~~~~~~~~L~~l~l--~~n~~~~~~~~~~-----~~~~l~~l~~~~~~~  253 (257)
                          +...+...++|++|++  ++|.+..+....+     ....+++|++++|..
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                3455666789999999  8898765432222     347899999998863

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.42  E-value=1.2e-05  Score=66.71  Aligned_cols=126  Identities=11%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      ...|+.+.+..+.. .....+|..++.|+.+.+. +.++.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus       264 c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          264 CAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            34567777755433 3556678888889998886 4566577788999999999999875 5546677899999999999


Q ss_pred             ccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153          201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN  252 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~  252 (257)
                      +..+ ++..-..++.+|.+|+.+.+.++.....  .-.....++.+.+..+.
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~--~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN--AISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH--TCBCCCCC---------
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCceeehh--hhhccCCCCEEEeCCCC
Confidence            9765 6645567889999999999998854432  11233567776665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.39  E-value=1.5e-05  Score=66.10  Aligned_cols=110  Identities=6%  Similarity=0.101  Sum_probs=81.7

Q ss_pred             ccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhh
Q 048153          137 HISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQ  216 (257)
Q Consensus       137 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  216 (257)
                      .-..+|..+..|+.+.+..+..+ +...+|..++.|+.+.+.. .++......|.++.+|+.+++..+ ++..-..++.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            44557888899999998766544 6777888999999999974 455466678899999999999865 65455678889


Q ss_pred             ccCCCeeccccCcccccCCCCC--ccCcccccccccC
Q 048153          217 FATFSESSYEGNHFLCGLPLPI--CRSPVTMLKASTT  251 (257)
Q Consensus       217 ~~~L~~l~l~~n~~~~~~~~~~--~~~~l~~l~~~~~  251 (257)
                      |.+|+.+.+.++  ...+...-  -...|+.+++..+
T Consensus       333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence            999999999765  33444332  2267777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=1.2e-07  Score=69.03  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             cccceEEcccCccccccCCCcCCCCCcCEEeccCCc-cccCCCccccCc----cCCCEEEccCCc-ccccCChhhhcCCC
Q 048153          122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHND-LIGTIPSTFSNL----KHIESLDLSYNQ-LNGKIPLQLVELNT  195 (257)
Q Consensus       122 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~  195 (257)
                      ..|++|+++++.++..--..+.++++|++|++++|. +++..-..+..+    ++|+.|++++|. +++.....+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999998875444556889999999999995 876655566653    489999999985 88776777888999


Q ss_pred             CCEEEccCCccc
Q 048153          196 LAVFSVAHNNLS  207 (257)
Q Consensus       196 L~~L~L~~n~l~  207 (257)
                      |++|++++|.-.
T Consensus       141 L~~L~L~~c~~I  152 (176)
T 3e4g_A          141 LKYLFLSDLPGV  152 (176)
T ss_dssp             CCEEEEESCTTC
T ss_pred             CCEEECCCCCCC
Confidence            999999999633

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.25  E-value=1.6e-05  Score=65.86  Aligned_cols=207  Identities=10%  Similarity=0.027  Sum_probs=103.1

Q ss_pred             ccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhh
Q 048153           10 LNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFL   89 (257)
Q Consensus        10 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~   89 (257)
                      ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+....|..+...........+..+....+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            44455678999999999999754 66566778999999999999765 55555566655442211111111211111111


Q ss_pred             hhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCc
Q 048153           90 VKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNL  169 (257)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  169 (257)
                      ...       ..................-....+|+.+.+..+. .......|.++.+|+.+.+..+ ++.+...+|..+
T Consensus       137 ~~~-------~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~  207 (394)
T 4fs7_A          137 KGC-------DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC  207 (394)
T ss_dssp             TTC-------CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred             ecc-------cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence            000       0000000000000000000114556666665443 3345556666777777766554 333444455555


Q ss_pred             cCCCEEEccCCcc---------------------cccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccC
Q 048153          170 KHIESLDLSYNQL---------------------NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGN  228 (257)
Q Consensus       170 ~~L~~L~l~~n~l---------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n  228 (257)
                      ..|+.+.+..+..                     +......+..+..++.+.+..+... .....+..+..++.+....+
T Consensus       208 ~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          208 ILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             TTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred             cccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence            5555555444322                     1122334445556666666555333 44445555666665554443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.19  E-value=3.5e-06  Score=58.42  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             EEeccCCccc-cCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCccc
Q 048153          150 TLNLSHNDLI-GTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLS  207 (257)
Q Consensus       150 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  207 (257)
                      .++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..+..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5555666554 12332221  24666666666666444445555666666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.14  E-value=3.3e-05  Score=63.56  Aligned_cols=86  Identities=15%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             CCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhcc
Q 048153          139 SPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFA  218 (257)
Q Consensus       139 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  218 (257)
                      ..+|..+..|+.+.+..+ +..+...+|..+.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..-..++.+|.
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            334444445555444322 33233444444455555555444444333444445555555555432 3323334444455


Q ss_pred             CCCeeccc
Q 048153          219 TFSESSYE  226 (257)
Q Consensus       219 ~L~~l~l~  226 (257)
                      +|+.+.+.
T Consensus       334 ~L~~i~ip  341 (379)
T 4h09_A          334 ALSTISYP  341 (379)
T ss_dssp             TCCCCCCC
T ss_pred             CCCEEEEC
Confidence            55555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.10  E-value=7.2e-05  Score=61.48  Aligned_cols=95  Identities=9%  Similarity=0.062  Sum_probs=72.5

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS  200 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  200 (257)
                      ...++.+.+..+ +.......|.++.+|+.+.+..+.++.+...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            456777777553 55466678999999999999998888788889999999999999765 6646677899999999998


Q ss_pred             ccCCcccCCCChhhhhcc
Q 048153          201 VAHNNLSGKIPEWTAQFA  218 (257)
Q Consensus       201 L~~n~l~~~~~~~~~~~~  218 (257)
                      +..+ ++..-..++.++.
T Consensus       340 ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          340 YPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCTT-CCEECTTTTTTSS
T ss_pred             ECCc-cCEEchhHhhCCC
Confidence            8655 5434445565553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.59  E-value=1.8e-05  Score=58.59  Aligned_cols=109  Identities=7%  Similarity=0.077  Sum_probs=75.2

Q ss_pred             ccccceEEcccC-cccc----ccCCCcCCCCCcCEEeccCCccccCCCcc----ccCccCCCEEEccCCcccccCC----
Q 048153          121 VSYLSGLDLSCN-KLIC----HISPQIGNLTRIQTLNLSHNDLIGTIPST----FSNLKHIESLDLSYNQLNGKIP----  187 (257)
Q Consensus       121 ~~~L~~L~ls~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~----  187 (257)
                      -+.|++|++++| .+..    .+...+...+.|+.|++++|.+......+    +..-.+|++|+++.|+|.+...    
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            456889999885 6542    23445667788999999999988543333    3455789999999999976433    


Q ss_pred             hhhhcCCCCCEEEccCCcc---cC----CCChhhhhccCCCeeccccCc
Q 048153          188 LQLVELNTLAVFSVAHNNL---SG----KIPEWTAQFATFSESSYEGNH  229 (257)
Q Consensus       188 ~~~~~~~~L~~L~L~~n~l---~~----~~~~~~~~~~~L~~l~l~~n~  229 (257)
                      ..+..-..|+.|+|++|..   ..    .+...+..-++|+.++++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3445567899999986533   32    233445556789999988764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00086  Score=46.21  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=17.3

Q ss_pred             cCEEeccCCccccCCCccccCccCCCEEEccCCc
Q 048153          148 IQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ  181 (257)
Q Consensus       148 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  181 (257)
                      |++|+|++|.|+.+.+..|..+++|+.|+|++|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4555555555554444445555555555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.92  E-value=0.0004  Score=51.39  Aligned_cols=112  Identities=15%  Similarity=0.121  Sum_probs=75.9

Q ss_pred             CcCCCCCcCEEeccCC-ccccC----CCccccCccCCCEEEccCCcccccCC----hhhhcCCCCCEEEccCCcccCCCC
Q 048153          141 QIGNLTRIQTLNLSHN-DLIGT----IPSTFSNLKHIESLDLSYNQLNGKIP----LQLVELNTLAVFSVAHNNLSGKIP  211 (257)
Q Consensus       141 ~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~  211 (257)
                      .+..-+.|+.|++++| .+...    ..+++..-.+|+.|++++|++.+...    ..+...+.|++|+|++|.+.+.-.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455678999999986 77642    33445566799999999999986433    344567899999999999985333


Q ss_pred             ----hhhhhccCCCeeccccCcc---cccC----CCCC-ccCcccccccccCC
Q 048153          212 ----EWTAQFATFSESSYEGNHF---LCGL----PLPI-CRSPVTMLKASTTN  252 (257)
Q Consensus       212 ----~~~~~~~~L~~l~l~~n~~---~~~~----~~~~-~~~~l~~l~~~~~~  252 (257)
                          +.+..-..|++|++++|..   -...    -.-. .+++++.|+++.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                3344456899999986532   2111    1111 45778888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.5 bits (176), Expect = 2e-15
 Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 23/259 (8%)

Query: 3   LDLSYNRLNG--SIPDLVDGLSQLSHLILAHN-NLEGKVPVQLCRLNQLQLLDLSNNNLH 59
           LDLS   L     IP  +  L  L+ L +    NL G +P  + +L QL  L +++ N+ 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 60  GL------------IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIY-------IYREKK 100
           G                   N        + SSL          N              K
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG 160
           +      +   +         +           ++   +  +    +         + + 
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATF 220
                    K++  LDL  N++ G +P  L +L  L   +V+ NNL G+IP+       F
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRF 293

Query: 221 SESSYEGNHFLCGLPLPIC 239
             S+Y  N  LCG PLP C
Sbjct: 294 DVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 2e-14
 Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 24/206 (11%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
             L  + N+++   P  +   + L  L L  N L+      L  L  L  LDL+NN +  
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 61  LIPPCFDN--TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG 118
           L P       T L    +  S++ P                  L   E     +      
Sbjct: 256 LAPLSGLTKLTELKLGANQISNISPLAGL------------TALTNLELNENQLEDISPI 303

Query: 119 RVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS 178
             +  L+ L L  N +       + +LT++Q L  ++N +  +  S+ +NL +I  L   
Sbjct: 304 SNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAG 359

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHN 204
           +NQ++   PL    L  +    +   
Sbjct: 360 HNQISDLTPLA--NLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 8e-13
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 10/213 (4%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           +LDL  N++          L  L  LIL +N +    P     L +L+ L LS N L  L
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 62  IPP-CFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
                     L    +  + ++    + L + I +      L+                 
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG------ 148

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
           +  LS + ++   +    +   G    +  L+L  N +     ++   L ++  L LS+N
Sbjct: 149 MKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
            ++      L     L    + +N L       
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 5e-09
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 10/212 (4%)

Query: 22  SQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDN-TTLHESYSNGSS 80
              + L L +N +          L  L  L L NN +  + P  F     L   Y + + 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 81  LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISP 140
           LK            +   +  +     +  N            +  L  +  K     + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM------IVVELGTNPLKSSGIENG 144

Query: 141 QIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFS 200
               + ++  + ++  ++         +L     L L  N++       L  LN LA   
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 201 VAHNNLSGKIPEWTAQFATFSESSYEGNHFLC 232
           ++ N++S       A      E     N  + 
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 18/186 (9%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           + L  +  + +G       G+ +LS++ +A  N+     +       L  L L  N +  
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITK 185

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
           +                   L     S    +         L         +     G  
Sbjct: 186 VDAASLKGLNNLA------KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 121 -VSYLSGLDLSCNKLIC------HISPQIGNLTRIQTLNLSHNDL--IGTIPSTFSNLKH 171
              Y+  + L  N +                      ++L  N +      PSTF  +  
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 172 IESLDL 177
             ++ L
Sbjct: 300 RAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 29/190 (15%), Positives = 65/190 (34%), Gaps = 18/190 (9%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLE--GKVPVQLCRLNQLQLLDLSNNNLHG 60
           L +  N +      + +GL+Q+  + L  N L+  G        + +L  + +++ N+  
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164

Query: 61  LIPPCFDN-TTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGR 119
           +      + T LH   +  + +       L     +           F + +        
Sbjct: 165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG--------LSFNSISAVDNGSLA 216

Query: 120 VVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTF------SNLKHIE 173
              +L  L L+ NKL+      + +   IQ + L +N++     + F      +      
Sbjct: 217 NTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 174 SLDLSYNQLN 183
            + L  N + 
Sbjct: 276 GVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 8e-09
 Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 8/183 (4%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
            L L    L    P L  GL+ L +L L  N L+         L  L  L L  N +  +
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
               F      +       L     + +  + +    + +         +   T     +
Sbjct: 169 PERAFRGLHSLDRL----LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
             L  L L+ N  +C           +Q    S +++  ++P   +         L+ N 
Sbjct: 225 RALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAAND 280

Query: 182 LNG 184
           L G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 40/250 (16%), Positives = 71/250 (28%), Gaps = 6/250 (2%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
                  L  ++P  +   +    + L  N +             L +L L +N L  + 
Sbjct: 16  TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
              F    L E             S      +       L +     + +       + +
Sbjct: 73  AAAFTGLALLEQLDLSD--NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
            L  L L  N L         +L  +  L L  N +       F  L  ++ L L  N++
Sbjct: 131 -LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSP 242
               P    +L  L    +  NNLS    E  A            N ++C        + 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 243 VTMLKASTTN 252
           +   + S++ 
Sbjct: 250 LQKFRGSSSE 259

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 7e-08
 Identities = 37/182 (20%), Positives = 53/182 (29%), Gaps = 8/182 (4%)

Query: 2   ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL 61
           IL LS N L       +   ++L+ L L  +  E         L  L  LDLS+N L  L
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 62  IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVV 121
                    L     + + L       L     +          +     +         
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
                  L+ N L    +  +  L  + TL L  N L  TIP  F     +    L  N 
Sbjct: 153 LS-----LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 182 LN 183
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 27/204 (13%), Positives = 63/204 (30%), Gaps = 11/204 (5%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           ++     L  ++P  +      + L L+ N L       L    +L  L+L        +
Sbjct: 15  VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKL 70

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                   L     + + L+               +     +       +    + + + 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
                    N+L       +    +++ L+L++N+L        + L+++++L L  N L
Sbjct: 131 L------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 183 NGKIPLQLVELNTLAVFSVAHNNL 206
              IP      + L    +  N  
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 125 SGLDLSC-NKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
           S L+++C  + +  + P +        L+LS N L     +T      +  L+L   +
Sbjct: 11  SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 7e-07
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 124 LSGLDLSCNKLIC-HISPQIGNLTRIQTLNLSHNDL----IGTIPSTFSNLKHIESLDLS 178
           +  LD+ C +L     +  +  L + Q + L    L       I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW 213
            N+L       +++        +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 3  LDLSYNRLNGS-IPDLVDGLSQLSHLILAHNNLEGKVPVQLCR----LNQLQLLDLSNNN 57
          LD+    L+ +   +L+  L Q   + L    L       +         L  L+L +N 
Sbjct: 7  LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 58 LHGLIPPCF 66
          L  +   C 
Sbjct: 67 LGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 135 ICHISPQIGNLTRIQTLNLSHNDL----IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQL 190
                      + ++ L L+  D+      ++ +T      +  LDLS N L     LQL
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 191 VE-----LNTLAVFSVAHNNLSGKIPEW 213
           VE        L    +     S ++ + 
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 122 SYLSGLDLSCNKL----ICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFS-----NLKHI 172
           S L  L L+   +       ++  +     ++ L+LS+N L                  +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 173 ESLDLSYNQLNGKIPLQLVEL 193
           E L L     + ++  +L  L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 2   ILDLSYNRLNG----SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCR-----LNQLQLLD 52
           +L L+   ++     S+   +     L  L L++N L     +QL          L+ L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 53  LSNNNLHGLIP 63
           L +      + 
Sbjct: 433 LYDIYWSEEME 443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 139 SPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAV 198
           + Q  N  R + L+L     I  I +  + L   +++D S N++          L  L  
Sbjct: 11  AAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKT 67

Query: 199 FSVAHNNLSGKIPEW 213
             V +N +       
Sbjct: 68  LLVNNNRICRIGEGL 82

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 122 SYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS-TFSNLKHIESLDLSYN 180
              SGL  + +  +      +     +  L + +   +  +       L  + +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL 236
            L    P        L+  +++ N L   +   T Q  +  E    GN   C   L
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 3/209 (1%)

Query: 3   LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI 62
           L     +L         G   L  + ++ N++   +   +                + L 
Sbjct: 34  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 93

Query: 63  PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVS 122
                   L        S    +    V  I+  ++  +          I       +  
Sbjct: 94  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 153

Query: 123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL 182
               L L+ N +    +         +     +N+L       F        LD+S  ++
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213

Query: 183 NGKIPLQLVELNTLAVFSVAHNNLSGKIP 211
           +      L  L  L   S    NL  K+P
Sbjct: 214 HSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 129 LSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPL 188
              N     I         ++ LN+S+N LI  +P+    L+    L  S+N L  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPE 321

Query: 189 QLVELNTLAVFSVAHNNLSGKIPEW 213
               L  L    V +N L  + P+ 
Sbjct: 322 LPQNLKQL---HVEYNPLR-EFPDI 342

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 17/207 (8%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           + +    + +  ++      L  ++ L      +     VQ   LN L  L+L +N +  
Sbjct: 22  IKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITD 77

Query: 61  L----------IPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTK 110
           L                N   + S   G            +   +     +  +      
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 111 NIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLK 170
               T    +    +   LS           + NL+++ TL    N +    P   ++L 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 171 HIESLDLSYNQLNGKIPL-QLVELNTL 196
           ++  + L  NQ++   PL     L  +
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 131 CNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ 181
            +  I  ISP + +L  +  ++L +N +    P   +N  ++  + L+ NQ
Sbjct: 181 DDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 32/201 (15%), Positives = 73/201 (36%), Gaps = 19/201 (9%)

Query: 1   MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHG 60
           +  +L    +  ++    + L+ +  +I  +++++    +Q   L  +  L L+ N L  
Sbjct: 27  IKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTD 82

Query: 61  LIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRV 120
           + P                           K   +   K + ++   + ++   +    +
Sbjct: 83  IKPLANLKNLGWLFLDE------------NKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYN 180
           V       L            +  LT++ TL+L  N +   +P   + L  +++L LS N
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

Query: 181 QLNGKIPLQ-LVELNTLAVFS 200
            ++    L  L  L+ L +FS
Sbjct: 189 HISDLRALAGLKNLDVLELFS 209

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 131 CNKLICHISPQIGNLTRIQTLNLSHNDL-IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQ 189
               +     +  +  R+Q ++LS++ + + T+    S    +++L L   +L+  I   
Sbjct: 31  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

Query: 190 LVELNTLAVFSVAHNN 205
           L + + L   +++  +
Sbjct: 91  LAKNSNLVRLNLSGCS 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.04

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=180.36  Aligned_cols=198  Identities=22%  Similarity=0.225  Sum_probs=158.5

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLK   82 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~   82 (257)
                      .|.++++++ .+|+.+.  +++++|+|++|++++..+.+|..+++|++|++++|.++.+.+. .....+..+....+.+.
T Consensus        15 v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          15 VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS
T ss_pred             EEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc-ccccccccccccccccc
Confidence            577788888 4665553  5788999999999877777888899999999999988755332 11222333333333332


Q ss_pred             CCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC
Q 048153           83 PFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI  162 (257)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  162 (257)
                      ....                              ....++.|++|++++|.+.+..+..+..+.+++.|++++|.++...
T Consensus        91 ~~~~------------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          91 SLPL------------------------------LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             SCCC------------------------------CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             cccc------------------------------ccccccccccccccccccceeeccccccccccccccccccccceec
Confidence            2111                              1122678999999999999888888899999999999999999888


Q ss_pred             CccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCC
Q 048153          163 PSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLP  235 (257)
Q Consensus       163 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  235 (257)
                      +..+..++.++.+++++|++++..+..+..+++|++|+|++|+++ .+|.++..+++|+.+++++|||.|+|.
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            888889999999999999999777788999999999999999999 788888889999999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=181.84  Aligned_cols=225  Identities=18%  Similarity=0.193  Sum_probs=175.8

Q ss_pred             EEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcc-ccc-ccCCCC
Q 048153            3 LDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTL-HES-YSNGSS   80 (257)
Q Consensus         3 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~~-~~~~~~   80 (257)
                      ++.++++++ .+|..+.  +.+++|++++|+++...+.+|.++++|++|++++|.+..+.+..+..... ..+ ....+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            455666666 4565443  56889999999998777778889999999999999988777766655442 222 122333


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhcccccccccccc--ccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY--QGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDL  158 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l  158 (257)
                      +..++..       .+.....++.+++..+.+....  ......+|+.+++++|.+++..+..|..+++|++|++++|.+
T Consensus        93 ~~~l~~~-------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          93 LRSVDPA-------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CCCCCTT-------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccch-------hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            3333222       1233445666666666554332  223367899999999999988788899999999999999999


Q ss_pred             ccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCC
Q 048153          159 IGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLP  237 (257)
Q Consensus       159 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  237 (257)
                      +++.+.+|..+++|+.+++++|++++..|..+.++++|++|++++|++.+..+..+..+++|+.+++++|+|.|+|+..
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            9888999999999999999999999888999999999999999999999888889999999999999999999998753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.1e-25  Score=180.41  Aligned_cols=229  Identities=29%  Similarity=0.433  Sum_probs=128.1

Q ss_pred             EEEcccccccc--cCCccccCcccCcEeeCcC-CcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccC
Q 048153            2 ILDLSYNRLNG--SIPDLVDGLSQLSHLILAH-NNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSN   77 (257)
Q Consensus         2 ~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~   77 (257)
                      .|||++|.+.+  .+|+.++++++|++|++++ |.+.+.+|+.|+.+++|++|++++|++.+..+..+.... +..+...
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            58999999986  4788999999999999986 889988999999999999999999999888776555443 3333333


Q ss_pred             CCCCCCCcchhhhhhhhhhhcccchhhccccccccccccc---cccccccceEEcccCcccccc----------------
Q 048153           78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQ---GRVVSYLSGLDLSCNKLICHI----------------  138 (257)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~L~~L~ls~n~~~~~~----------------  138 (257)
                      .+.....-       ...+..+..++.+.+..+.+.....   ......++.+++++|.+++..                
T Consensus       134 ~N~~~~~~-------p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~  206 (313)
T d1ogqa_         134 YNALSGTL-------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR  206 (313)
T ss_dssp             SSEEESCC-------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCS
T ss_pred             cccccccC-------chhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33221110       0112223333344444333321111   011112244455555544444                


Q ss_pred             -------CCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCC
Q 048153          139 -------SPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIP  211 (257)
Q Consensus       139 -------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  211 (257)
                             |..+..++.++.+++++|.+.+.. ..+..+++|+.|++++|++++.+|..++++++|++|+|++|++++.+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence                   444444445555555555544322 234444555555555555554455555555555555555555554444


Q ss_pred             hhhhhccCCCeeccccCcccccCCCCCc
Q 048153          212 EWTAQFATFSESSYEGNHFLCGLPLPIC  239 (257)
Q Consensus       212 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~  239 (257)
                      . ++.+.+|+.+++++|+.+|..|.+.|
T Consensus       286 ~-~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             C-STTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             C-cccCCCCCHHHhCCCccccCCCCCCC
Confidence            3 23445555555555555554444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=2e-25  Score=178.86  Aligned_cols=224  Identities=21%  Similarity=0.297  Sum_probs=170.5

Q ss_pred             ccCcEeeCcCCcccc--cCChhhhCCCCCCeeeccC-ceecccCCCCCcCCc-ccccccCCCCCCCCcchhhhhhhhhhh
Q 048153           22 SQLSHLILAHNNLEG--KVPVQLCRLNQLQLLDLSN-NNLHGLIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYR   97 (257)
Q Consensus        22 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~   97 (257)
                      .+++.|+++++.+.+  .+|+.++.+++|++|++++ |.+.+..|..+..+. +..+....+.+.......       ..
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-------~~  122 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-------LS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-------GG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc-------cc
Confidence            479999999999986  4789999999999999986 889887887666554 556666665554332221       22


Q ss_pred             cccchhhcccccccccccc--ccccccccceEEcccCccccccCCCcCCCCCc-CEEeccCCccccCC------------
Q 048153           98 EKKILEIFEFTTKNIAYTY--QGRVVSYLSGLDLSCNKLICHISPQIGNLTRI-QTLNLSHNDLIGTI------------  162 (257)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~--~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~------------  162 (257)
                      ....++.+....+......  ....++.++++++++|.+.+.+|..+..+..+ +.+++++|.+++..            
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l  202 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             chhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344555555555433321  22347889999999999998889888777765 77777777766543            


Q ss_pred             -----------CccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153          163 -----------PSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       163 -----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  231 (257)
                                 +..+..++.++.+++++|.+.+.+ ..+..+++|+.|++++|++.+.+|..++++++|++|++++|.+.
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence                       444455678889999999988544 46778899999999999999999999999999999999999999


Q ss_pred             ccCCCCCccCcccccccccCCc
Q 048153          232 CGLPLPICRSPVTMLKASTTNK  253 (257)
Q Consensus       232 ~~~~~~~~~~~l~~l~~~~~~~  253 (257)
                      +.+|...-...++.+++++|+.
T Consensus       282 g~iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         282 GEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EECCCSTTGGGSCGGGTCSSSE
T ss_pred             ccCCCcccCCCCCHHHhCCCcc
Confidence            9999764457889999998874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.6e-24  Score=170.83  Aligned_cols=227  Identities=24%  Similarity=0.267  Sum_probs=136.5

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      ++|+|++|+|+...+.+|.++++|++|++++|.+....|..|..+++|++|++++|+++.++.....  .+..+....+.
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~--~l~~L~~~~n~  111 (305)
T d1xkua_          34 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENE  111 (305)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCT--TCCEEECCSSC
T ss_pred             CEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhh--hhhhhhccccc
Confidence            5799999999976667899999999999999999977788899999999999999999876544332  22333333333


Q ss_pred             CCCCcchhhhh-------------------hhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCC
Q 048153           81 LKPFETSFLVK-------------------NIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQ  141 (257)
Q Consensus        81 l~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  141 (257)
                      +..+....+..                   ....+..+..++.+....+.+..... ..++++++|++++|......+..
T Consensus       112 l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECTGG
T ss_pred             hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCChhH
Confidence            33332221111                   01112222333333444333332211 22455666666666665555555


Q ss_pred             cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChh------hh
Q 048153          142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEW------TA  215 (257)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------~~  215 (257)
                      +.+++.++.|++++|.+++..+.++..+++|++|++++|+++ .+|..+..+++|+.|++++|+++......      ..
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhc
Confidence            666666666666666666555556666666666666666665 44555556666666666666665322222      22


Q ss_pred             hccCCCeeccccCccc
Q 048153          216 QFATFSESSYEGNHFL  231 (257)
Q Consensus       216 ~~~~L~~l~l~~n~~~  231 (257)
                      ..++|+.+++++|+|.
T Consensus       270 ~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         270 KKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TSCCCSEEECCSSSSC
T ss_pred             ccCCCCEEECCCCcCc
Confidence            3455666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-23  Score=162.36  Aligned_cols=200  Identities=20%  Similarity=0.176  Sum_probs=162.0

Q ss_pred             ccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCCCCCCcchhhhhhhhhh
Q 048153           18 VDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIY   96 (257)
Q Consensus        18 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~   96 (257)
                      +.....+..++.+++.++ .+|+.+.  +++++|++++|.++++.+..|.... +..+....+.++              
T Consensus         6 ~~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~--------------   68 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--------------   68 (266)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC--------------
T ss_pred             EcccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc--------------
Confidence            345566777899999998 5676664  4799999999999887766554432 444444444333              


Q ss_pred             hcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEE
Q 048153           97 REKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLD  176 (257)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  176 (257)
                                       .......+++|++|++++|.+. ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|+
T Consensus        69 -----------------~l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          69 -----------------KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             -----------------EEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             -----------------cccccccccccccccccccccc-ccccccccccccccccccccccceeecccccccccccccc
Confidence                             2222233788999999999998 4566889999999999999999988888899999999999


Q ss_pred             ccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCc-cCcccccccccCCc
Q 048153          177 LSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPIC-RSPVTMLKASTTNK  253 (257)
Q Consensus       177 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~l~~l~~~~~~~  253 (257)
                      +++|.++...+..+..++.++.+++++|++++..+..+..+++|++|++++|.+. .+|..+. ...++.|++++|.-
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            9999999777777888999999999999999887888999999999999999976 7887774 47899999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=159.65  Aligned_cols=219  Identities=16%  Similarity=0.121  Sum_probs=167.5

Q ss_pred             EeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCCCCCCcchhhhhhhhhhhcccchhh
Q 048153           26 HLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSSLKPFETSFLVKNIYIYREKKILEI  104 (257)
Q Consensus        26 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  104 (257)
                      .++.+++.++ .+|..+.  +.+++|++++|+++++.+..+.... +..+....+.+..+.........       .+..
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~-------~~~~   84 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-------LLEQ   84 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------TCCE
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc-------cccc
Confidence            4577777777 5676554  4789999999999988887776655 66677767766655443332211       1111


Q ss_pred             ccc-cccccccc--cccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCc
Q 048153          105 FEF-TTKNIAYT--YQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQ  181 (257)
Q Consensus       105 ~~~-~~~~~~~~--~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  181 (257)
                      +.. ..+.+...  ..-..+++|++|++++|.+....+..+....+|+.+++++|.++++.+.+|..+++|+.|++++|+
T Consensus        85 l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            111 11111111  112236889999999999987777888889999999999999998888899999999999999999


Q ss_pred             ccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCC-ccCcccccccccCCcc
Q 048153          182 LNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPI-CRSPVTMLKASTTNKE  254 (257)
Q Consensus       182 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~l~~l~~~~~~~~  254 (257)
                      ++...+..+.++++|+.+++++|++.+..|..+..+++|+.+++++|.+....+..+ -..+++.+++++|.-.
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            997778889999999999999999998889999999999999999999877555444 3478999999998643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=4.5e-21  Score=152.67  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=180.9

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCc-ccccccCCCC
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTT-LHESYSNGSS   80 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~~~~~~   80 (257)
                      .+|-++++++ .+|..+.  +++++|++++|+++...+.+|..+++|++|++++|.+....|..+.... +..+....+.
T Consensus        14 ~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          14 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            4666777788 5676553  6899999999999966667899999999999999999988888777644 6666677777


Q ss_pred             CCCCcchhhhhhhhhh--------------hcccchhhccccccccccc----cccccccccceEEcccCccccccCCCc
Q 048153           81 LKPFETSFLVKNIYIY--------------REKKILEIFEFTTKNIAYT----YQGRVVSYLSGLDLSCNKLICHISPQI  142 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~----~~~~~~~~L~~L~ls~n~~~~~~~~~~  142 (257)
                      ++.++...........              ........+....+.....    ..-..+++|+++++++|.+.. +|..+
T Consensus        91 l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~  169 (305)
T d1xkua_          91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL  169 (305)
T ss_dssp             CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC
T ss_pred             cCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc
Confidence            7665544332211111              0111111122222111111    111225679999999999874 44433


Q ss_pred             CCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCe
Q 048153          143 GNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSE  222 (257)
Q Consensus       143 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  222 (257)
                        +++|++|++++|......+.++..++.++.|++++|++++..+..+.++++|+.|+|++|++. .+|.++..+++|+.
T Consensus       170 --~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~  246 (305)
T d1xkua_         170 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  246 (305)
T ss_dssp             --CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             --CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCE
Confidence              578999999999999888899999999999999999999888888999999999999999998 67888999999999


Q ss_pred             eccccCcccccCCCC-C-------ccCcccccccccCCcc
Q 048153          223 SSYEGNHFLCGLPLP-I-------CRSPVTMLKASTTNKE  254 (257)
Q Consensus       223 l~l~~n~~~~~~~~~-~-------~~~~l~~l~~~~~~~~  254 (257)
                      |++++|++.. ++.. +       ...+++.|++++|..+
T Consensus       247 L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         247 VYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999998653 4422 2       3478899999998754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=6.5e-20  Score=150.08  Aligned_cols=124  Identities=24%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCC--------------------CccccCccCCCEEEccCC
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTI--------------------PSTFSNLKHIESLDLSYN  180 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------~~~~~~~~~L~~L~l~~n  180 (257)
                      +++++.+++++|.+++..  .+..+++|++++++++.+++..                    ...+..++.++.|++++|
T Consensus       240 l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred             ccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC
Confidence            455566666665555332  2455566666666666554321                    122444556677777777


Q ss_pred             cccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccC
Q 048153          181 QLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTT  251 (257)
Q Consensus       181 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~  251 (257)
                      ++++. + .+..+++|+.|++++|+++ .++ .++.+++|++|++++|++..-.|.. -.+.|++|++++|
T Consensus       318 ~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~l~-~l~~L~~L~L~~N  383 (384)
T d2omza2         318 NISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGGGT-TCTTCSEEECCCE
T ss_pred             CCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChhhc-cCCCCCEeeCCCC
Confidence            76643 2 3566777777777777776 333 4667777777777777765433311 1256777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=7.3e-21  Score=141.33  Aligned_cols=63  Identities=30%  Similarity=0.426  Sum_probs=34.0

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCccc
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLN  183 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  183 (257)
                      ++.|++|++++|.+++..+.+|.++++|++|++++|.|+.+.+++|..+++|+++++++|.+.
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            344555555555555555555555555555555555555555555555555555555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=4.4e-19  Score=145.09  Aligned_cols=123  Identities=20%  Similarity=0.294  Sum_probs=90.9

Q ss_pred             chhhccccccccccccccccccccceEEcccCccccccC--------------------CCcCCCCCcCEEeccCCcccc
Q 048153          101 ILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHIS--------------------PQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~  160 (257)
                      .+..+.+..+.+.........++|++++++++.+.+..+                    ..+..++.++++++++|.+++
T Consensus       242 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~  321 (384)
T d2omza2         242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD  321 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC
T ss_pred             ccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC
Confidence            334444444443333333446678888887776653211                    235567789999999999996


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNH  229 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~  229 (257)
                      ..  .+..+++|+.|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|.
T Consensus       322 l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         322 IS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             Cc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            53  37889999999999999984 44 68899999999999999996554  7889999999999984

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1.8e-19  Score=133.72  Aligned_cols=171  Identities=20%  Similarity=0.246  Sum_probs=134.5

Q ss_pred             CcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccC-CCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcccch
Q 048153           24 LSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLI-PPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREKKIL  102 (257)
Q Consensus        24 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  102 (257)
                      .+.++.++++++ .+|..+.  +++++|++++|++++.. +..|..                                  
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~----------------------------------   52 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR----------------------------------   52 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG----------------------------------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCC----------------------------------
Confidence            467888888888 5666553  47999999999987543 323322                                  


Q ss_pred             hhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcc
Q 048153          103 EIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQL  182 (257)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  182 (257)
                                        +++|++|++++|.+....+..|..++.|++|++++|.++++.+.+|.++++|+.|++++|++
T Consensus        53 ------------------l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          53 ------------------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             ------------------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             ------------------CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccc
Confidence                              67799999999999988889999999999999999999998899999999999999999999


Q ss_pred             cccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCC
Q 048153          183 NGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTN  252 (257)
Q Consensus       183 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~  252 (257)
                      +...+..|..+++|++++|++|.+....... .....++...+..+.+.|..|...-.  ++.++++.+.
T Consensus       115 ~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~l~~--~~l~~L~~n~  181 (192)
T d1w8aa_         115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRD--VQIKDLPHSE  181 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTTTTT--SBGGGSCTTT
T ss_pred             cccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChhhcC--CEeeecCHhh
Confidence            9877888999999999999999998544322 12234667777888888887766533  4455555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=3.8e-18  Score=129.78  Aligned_cols=200  Identities=19%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             cccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCC
Q 048153            5 LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPF   84 (257)
Q Consensus         5 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~   84 (257)
                      ++.+++++..  .++.+.+|++|++.+|.++. + ..+..+++|++|++++|.+.+..+ ......+..+....+.++.+
T Consensus        26 l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC
T ss_pred             hCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccccccc
Confidence            4445555433  35667777777777777763 3 346677777777777777765432 11111222233333333222


Q ss_pred             cchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCc
Q 048153           85 ETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS  164 (257)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  164 (257)
                      ..         ......++.+.+..+...........+.+..+.++++.+...  ..+..+++|++|++++|.+...  .
T Consensus       101 ~~---------l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~  167 (227)
T d1h6ua2         101 SA---------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--T  167 (227)
T ss_dssp             GG---------GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             cc---------ccccccccccccccccccccchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--h
Confidence            21         111122222222222222222222234455555555444322  1244455555555555555422  1


Q ss_pred             cccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccc
Q 048153          165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYE  226 (257)
Q Consensus       165 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  226 (257)
                      .++.+++|+.|++++|++++ ++ .+.++++|++|++++|++++. + .++++++|+.++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            24455555555555555552 22 244555555555555555532 2 14455555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=4.1e-18  Score=128.06  Aligned_cols=166  Identities=23%  Similarity=0.294  Sum_probs=97.7

Q ss_pred             cCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhc
Q 048153           19 DGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYRE   98 (257)
Q Consensus        19 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~   98 (257)
                      +.+.+|++|++++|.++..  ..+..+++|++|++++|++++..+  +..                              
T Consensus        43 ~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~~--~~~------------------------------   88 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LAN------------------------------   88 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTT------------------------------
T ss_pred             HHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCccc--ccc------------------------------
Confidence            3567788888888887733  236677888888888887764322  111                              


Q ss_pred             ccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEcc
Q 048153           99 KKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLS  178 (257)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  178 (257)
                                            +++|++|++++|.++.. + .+..+++|+.+++++|.+..  ...+..++.++.++++
T Consensus        89 ----------------------l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          89 ----------------------LKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLG  142 (210)
T ss_dssp             ----------------------CTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECC
T ss_pred             ----------------------Ccccccccccccccccc-c-cccccccccccccccccccc--cccccccccccccccc
Confidence                                  45566666666666532 2 35566666666666666552  2345556666666666


Q ss_pred             CCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccc
Q 048153          179 YNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKAS  249 (257)
Q Consensus       179 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~  249 (257)
                      +|.+++  +..+..+++|+.+++++|++.+ ++ .++.+++|++|++++|.+. ++|.-...+.|+.|+++
T Consensus       143 ~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         143 NNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             SSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEE
T ss_pred             cccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEcc
Confidence            666652  2234556666666666666653 22 2556666666666666543 34321123556666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=6.3e-18  Score=125.96  Aligned_cols=160  Identities=22%  Similarity=0.338  Sum_probs=93.8

Q ss_pred             cccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCC
Q 048153            5 LSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPF   84 (257)
Q Consensus         5 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~   84 (257)
                      ++.+.+++..+  .+.+.++++|++++|.+...  +.+..+++|++|++++|++++..+  +..                
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~----------------   82 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKN----------------   82 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTT----------------
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccC----------------
Confidence            44555554332  34677888888888888732  346778888888888888765422  211                


Q ss_pred             cchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCc
Q 048153           85 ETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPS  164 (257)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  164 (257)
                                                          +++|++|++++|.+... + .+..++.|+.+++++|.+...  +
T Consensus        83 ------------------------------------l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~  122 (199)
T d2omxa2          83 ------------------------------------LTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--D  122 (199)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--G
T ss_pred             ------------------------------------Ccccccccccccccccc-c-ccccccccccccccccccccc--c
Confidence                                                44566666666655422 2 355566666666666655532  2


Q ss_pred             cccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcc
Q 048153          165 TFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHF  230 (257)
Q Consensus       165 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  230 (257)
                      .+..+++|+.|++++|++. .+ ..+..+++|+.|++++|++.+. + .++++++|+.|++++|++
T Consensus       123 ~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         123 PLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             ccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCC
Confidence            3455566666666666655 22 2355566666666666666532 2 255566666666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=128.54  Aligned_cols=197  Identities=14%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             EEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceeccc-CCCCCcCCc-ccccccC-C
Q 048153            2 ILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGL-IPPCFDNTT-LHESYSN-G   78 (257)
Q Consensus         2 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~-l~~~~~~-~   78 (257)
                      +++.++.+++ .+|+.+.  +++++|++++|+++...+.+|.++++|++|++++|.+... .+..+.... +..+... .
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            5677777777 5665442  5789999999999866667788999999999999987654 344444332 2222221 2


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCC-CcCCCCCcCEEeccCCc
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISP-QIGNLTRIQTLNLSHND  157 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~  157 (257)
                      +.+.......       +..                      +++|+++++++|.+....+. .+..+..+..+...++.
T Consensus        89 n~l~~~~~~~-------~~~----------------------l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~  139 (242)
T d1xwdc1          89 NNLLYINPEA-------FQN----------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN  139 (242)
T ss_dssp             TTCCEECTTS-------EEC----------------------CTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT
T ss_pred             cccccccccc-------ccc----------------------cccccccccchhhhcccccccccccccccccccccccc
Confidence            2222211111       111                      34455555555555422211 12223334333444444


Q ss_pred             cccCCCccccCcc-CCCEEEccCCcccccCChhhhcCCCCCEE-EccCCcccCCCChhhhhccCCCeeccccCccc
Q 048153          158 LIGTIPSTFSNLK-HIESLDLSYNQLNGKIPLQLVELNTLAVF-SVAHNNLSGKIPEWTAQFATFSESSYEGNHFL  231 (257)
Q Consensus       158 l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  231 (257)
                      +..+.+..+..++ .++.+++++|+++...+..+ +.++++.+ ++++|+++...+..+.++++|++|++++|++.
T Consensus       140 l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            4444444444333 45555555555553222222 22333333 34444555333334455555555555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.9e-17  Score=121.58  Aligned_cols=157  Identities=25%  Similarity=0.363  Sum_probs=124.9

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.|++++|.+... + .++.+++|++|++++|++++..  .++.+++|++|++++|.+....+  +..            
T Consensus        43 ~~L~l~~~~i~~l-~-~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~~--l~~------------  104 (199)
T d2omxa2          43 TTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LAN------------  104 (199)
T ss_dssp             CEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTT------------
T ss_pred             CEEECCCCCCCCc-c-ccccCCCcCcCccccccccCcc--cccCCcccccccccccccccccc--ccc------------
Confidence            4689999999854 2 4888999999999999998543  38899999999999998754321  111            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              ++.|++++++++.....  +.+..+++|+.+++++|.+..
T Consensus       105 ----------------------------------------l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2         105 ----------------------------------------LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             ----------------------------------------CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC
T ss_pred             ----------------------------------------ccccccccccccccccc--cccchhhhhHHhhhhhhhhcc
Confidence                                                    66789999998887643  357889999999999999884


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCee
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSES  223 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  223 (257)
                      .  +.+..+++|+.|++.+|++++. + .+.++++|+.|++++|++++ ++ .++.+++|++|
T Consensus       143 ~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         143 I--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             c--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            3  4578889999999999999853 3 47889999999999999984 44 47788888865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.5e-17  Score=122.88  Aligned_cols=161  Identities=20%  Similarity=0.271  Sum_probs=131.4

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSS   80 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~   80 (257)
                      +.|++++|.+.+..  .++.+++|++|++++|++++..  .++.+++|++|++++|+++.+. . +..            
T Consensus        49 ~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~-~-l~~------------  110 (210)
T d1h6ta2          49 DQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS-S-LKD------------  110 (210)
T ss_dssp             CEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG-G-GTT------------
T ss_pred             cEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc-c-ccc------------
Confidence            46899999998543  3889999999999999998533  4688999999999999987532 1 111            


Q ss_pred             CCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCcccc
Q 048153           81 LKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIG  160 (257)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  160 (257)
                                                              ++.|+.+++++|.+...  ..+..++.++.+++++|.+++
T Consensus       111 ----------------------------------------l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2         111 ----------------------------------------LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD  148 (210)
T ss_dssp             ----------------------------------------CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------ccccccccccccccccc--ccccccccccccccccccccc
Confidence                                                    67799999999987632  357889999999999999884


Q ss_pred             CCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeecccc
Q 048153          161 TIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEG  227 (257)
Q Consensus       161 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~  227 (257)
                        +..+..+++|+.+++++|++++ ++ .+.++++|+.|++++|+++ .++ .++.+++|+.|++++
T Consensus       149 --~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 --ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             --cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence              3456788999999999999985 33 3788999999999999998 455 588999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8e-17  Score=122.37  Aligned_cols=209  Identities=14%  Similarity=0.184  Sum_probs=144.8

Q ss_pred             CcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhhhcc
Q 048153           20 GLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIYREK   99 (257)
Q Consensus        20 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~   99 (257)
                      .+.++..++++.+++++..  .+.++.+|++|++.+|.++.+ ++.-....+..+....+.+.....         +..+
T Consensus        17 ~l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~---------l~~l   84 (227)
T d1h6ua2          17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP---------LKNL   84 (227)
T ss_dssp             HHHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---------GTTC
T ss_pred             HHHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc---------cccc
Confidence            3445556778888887543  456788999999999999865 332233346666666666554432         2233


Q ss_pred             cchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccC
Q 048153          100 KILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSY  179 (257)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  179 (257)
                      ..++.+....+.+........+++|+++.++++.....  ..+...+.+..+.++.+.+...  ..+..+++|+.|++++
T Consensus        85 ~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2          85 TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGN  160 (227)
T ss_dssp             CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccc
Confidence            44555555555444443344578899999988876533  2456678888999988887743  3466788999999999


Q ss_pred             CcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccc
Q 048153          180 NQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKAS  249 (257)
Q Consensus       180 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~  249 (257)
                      |.+++.  ..+.++++|+.|++++|++.+ ++ .++.+++|++|++++|++.. ++.-.-...|+.|+++
T Consensus       161 n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         161 AQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEE
T ss_pred             cccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEee
Confidence            998743  347889999999999999984 43 37889999999999998654 4422234678888776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.9e-16  Score=118.16  Aligned_cols=197  Identities=12%  Similarity=0.051  Sum_probs=138.8

Q ss_pred             CEEEcccccccccCCccccCcccCcEeeCcCCccccc-CChhhhCCCCCCeeecc-CceecccCCCCCcCCc-ccccccC
Q 048153            1 MILDLSYNRLNGSIPDLVDGLSQLSHLILAHNNLEGK-VPVQLCRLNQLQLLDLS-NNNLHGLIPPCFDNTT-LHESYSN   77 (257)
Q Consensus         1 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~-l~~~~~~   77 (257)
                      ++||+++|+|+...+.+|.++++|++|++++|.+... .+..|..+++++++.+. .|.+....+..+..+. +..+.  
T Consensus        32 ~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~--  109 (242)
T d1xwdc1          32 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL--  109 (242)
T ss_dssp             SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE--
T ss_pred             CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc--
Confidence            4799999999977777899999999999999988754 45578889999999875 4667666666554433 22222  


Q ss_pred             CCCCCCCcchhhhhhhhhhhcccchhhcccccccccccccc---ccccccceEEcccCccccccCCCcCCCC-CcCEEec
Q 048153           78 GSSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQG---RVVSYLSGLDLSCNKLICHISPQIGNLT-RIQTLNL  153 (257)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l  153 (257)
                                                   +..+.+......   ..+..+..+...++.+....+..|.+++ .++.+++
T Consensus       110 -----------------------------l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1         110 -----------------------------ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             -----------------------------EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             -----------------------------cchhhhcccccccccccccccccccccccccccccccccccccccceeeec
Confidence                                         222222211111   1234455555566677766667777765 7899999


Q ss_pred             cCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccC
Q 048153          154 SHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGN  228 (257)
Q Consensus       154 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n  228 (257)
                      ++|.++.+.+..+......+.+.+++|+++...+..+.++++|+.|++++|++++..+..+..+++|+.+++...
T Consensus       161 ~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         161 NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             ccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            999999766666654333445567888998555567899999999999999999665667777777777776553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.1e-15  Score=104.53  Aligned_cols=104  Identities=22%  Similarity=0.319  Sum_probs=87.8

Q ss_pred             ceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCC
Q 048153          125 SGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHN  204 (257)
Q Consensus       125 ~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  204 (257)
                      +.|++++|.++ .++ .+..++.|++|++++|.+++ .|+.+..+++|+.|++++|++++ ++ .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            46899999998 444 48889999999999999994 56778899999999999999984 44 5888999999999999


Q ss_pred             cccCCCC-hhhhhccCCCeeccccCccccc
Q 048153          205 NLSGKIP-EWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       205 ~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      ++.+... ..++.+++|+.+++++|++...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            9985432 5678899999999999997653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4e-16  Score=111.96  Aligned_cols=83  Identities=18%  Similarity=0.110  Sum_probs=43.5

Q ss_pred             cCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC-ChhhhcCCCCCEEEccCCcccCCC---Chhhhhc
Q 048153          142 IGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI-PLQLVELNTLAVFSVAHNNLSGKI---PEWTAQF  217 (257)
Q Consensus       142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~~  217 (257)
                      +..+++|++|++++|.++...+..+..+++|+.|++++|+++... ...+..+++|++|++++|.+....   +..++.+
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l  138 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV  138 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC
T ss_pred             cccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHC
Confidence            444555555555555555444444445556666666666555221 124455566666666666655322   1234556


Q ss_pred             cCCCeec
Q 048153          218 ATFSESS  224 (257)
Q Consensus       218 ~~L~~l~  224 (257)
                      |+|+.||
T Consensus       139 p~L~~LD  145 (162)
T d1a9na_         139 PQVRVLD  145 (162)
T ss_dssp             TTCSEET
T ss_pred             CCcCeeC
Confidence            6666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.2e-16  Score=111.34  Aligned_cols=130  Identities=17%  Similarity=0.161  Sum_probs=106.0

Q ss_pred             cccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhhhhhh
Q 048153           17 LVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKNIYIY   96 (257)
Q Consensus        17 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~   96 (257)
                      .|.++.++++|++++|+++. ++..+..+++|++|++++|.++.+ +. +..                            
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~~-~~~----------------------------   61 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DG-FPL----------------------------   61 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CC-CCC----------------------------
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-CC-ccc----------------------------
Confidence            46788899999999999984 566667899999999999999754 21 221                            


Q ss_pred             hcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCC-ccccCccCCCEE
Q 048153           97 REKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP-STFSNLKHIESL  175 (257)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L  175 (257)
                                              +++|++|++++|.++...+..+..+++|++|++++|.++.... ..+..+++|+.+
T Consensus        62 ------------------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          62 ------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             ------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             ------------------------CcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence                                    6789999999999997666667789999999999999985432 567889999999


Q ss_pred             EccCCcccccCCh----hhhcCCCCCEEEcc
Q 048153          176 DLSYNQLNGKIPL----QLVELNTLAVFSVA  202 (257)
Q Consensus       176 ~l~~n~l~~~~~~----~~~~~~~L~~L~L~  202 (257)
                      ++++|.++ ..+.    .+..+|+|+.||-+
T Consensus       118 ~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         118 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             hcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence            99999998 4443    47889999998743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-15  Score=107.59  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=93.8

Q ss_pred             ccceEEcccCccccccCCCcCCCCCcCEEeccCC-ccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEc
Q 048153          123 YLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHN-DLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSV  201 (257)
Q Consensus       123 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  201 (257)
                      ..+.++++++.+. ..|..+..+++|+.|++++| .++.+.+.+|..+++|+.|++++|+++...+.+|.++++|+.|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456788888877 45677888999999999876 599888889999999999999999999777888999999999999


Q ss_pred             cCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          202 AHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       202 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      ++|+++...+..+ ...+|+.|++++|+|.|+|-.
T Consensus        88 s~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            9999994444444 455799999999999987743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3e-14  Score=97.29  Aligned_cols=114  Identities=22%  Similarity=0.295  Sum_probs=88.9

Q ss_pred             ccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccC
Q 048153          107 FTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKI  186 (257)
Q Consensus       107 ~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  186 (257)
                      ++.+.+........++.|++|++++|.++ .+|+.+..+++|+.|++++|.++.. + .+..+++|+.|++++|+++...
T Consensus         5 Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3           5 LAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             CTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSS
T ss_pred             cCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCC
Confidence            33343333333344788999999999998 5677899999999999999999954 3 5889999999999999998543


Q ss_pred             -ChhhhcCCCCCEEEccCCcccCC---CChhhhhccCCCee
Q 048153          187 -PLQLVELNTLAVFSVAHNNLSGK---IPEWTAQFATFSES  223 (257)
Q Consensus       187 -~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~l  223 (257)
                       ...+..+++|+.|++++|++.+.   .......+|+|+.+
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             25678899999999999999743   23445567888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=1.2e-12  Score=104.87  Aligned_cols=59  Identities=24%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             ccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCC
Q 048153          169 LKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPL  236 (257)
Q Consensus       169 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  236 (257)
                      +++|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|..   +++|++|++++|++. .+|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            457788888888777 4553   3567788888888777 45543   457788888888744 4554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.3e-15  Score=115.09  Aligned_cols=84  Identities=24%  Similarity=0.239  Sum_probs=52.6

Q ss_pred             ccccceEEcccCc--ccc-ccCCCcCCCCCcCEEeccCCc-cccCCCccccCccCCCEEEccCC-cccccCChhhhcCCC
Q 048153          121 VSYLSGLDLSCNK--LIC-HISPQIGNLTRIQTLNLSHND-LIGTIPSTFSNLKHIESLDLSYN-QLNGKIPLQLVELNT  195 (257)
Q Consensus       121 ~~~L~~L~ls~n~--~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~  195 (257)
                      .+.|+.|.++++.  ++. .+...+..+++|++|++++|. +++.....+..+++|++|++++| .+++.....++++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            3567777777642  221 122223456777777777753 66556666667777777777774 466555556667777


Q ss_pred             CCEEEccCC
Q 048153          196 LAVFSVAHN  204 (257)
Q Consensus       196 L~~L~L~~n  204 (257)
                      |+.|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            777777776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=5.8e-12  Score=100.77  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             CCCCCEEEccCCcccCCCChhhhhccCCCeeccccCcccccCCCCCccCcccccccccCCccc
Q 048153          193 LNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCGLPLPICRSPVTMLKASTTNKEM  255 (257)
Q Consensus       193 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~l~~l~~~~~~~~~  255 (257)
                      +++|++|++++|++. .+|..   +++|+.|++++|.+. ++|.  ....++.|++++|..+.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~--~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc--ccCCCCEEECcCCcCCC
Confidence            578999999999998 66643   689999999999865 5664  34679999999998654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=2.4e-15  Score=111.43  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=64.8

Q ss_pred             ccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCC-hhhhcCCCCCEE
Q 048153          121 VSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIP-LQLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L  199 (257)
                      +++|++|++++|.++ .++..+..++.|+.|++++|.++..  +.+..+++|+.|++++|+++.... ..+..+++|+.|
T Consensus        69 l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             CccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCcccee
Confidence            556777777777766 3343334445677777777777743  345667778888888887763321 356777788888


Q ss_pred             EccCCcccCCCCh----------hhhhccCCCeec
Q 048153          200 SVAHNNLSGKIPE----------WTAQFATFSESS  224 (257)
Q Consensus       200 ~L~~n~l~~~~~~----------~~~~~~~L~~l~  224 (257)
                      ++++|.+....+.          .+..+|+|+.||
T Consensus       146 ~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888777543222          145677777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=2.1e-15  Score=111.79  Aligned_cols=136  Identities=23%  Similarity=0.295  Sum_probs=103.1

Q ss_pred             cCCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCceecccCCCCCcCCcccccccCCCCCCCCcchhhhhh
Q 048153           13 SIPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNNLHGLIPPCFDNTTLHESYSNGSSLKPFETSFLVKN   92 (257)
Q Consensus        13 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~   92 (257)
                      ..+.+++.+++|++|++++|+++. ++ .+..+++|++|++++|.++.+ +....                         
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~-------------------------   90 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA-------------------------   90 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHH-------------------------
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccc-------------------------
Confidence            345678889999999999999984 33 588999999999999998643 21100                         


Q ss_pred             hhhhhcccchhhccccccccccccccccccccceEEcccCccccccCCCcCCCCCcCEEeccCCccccCCC-ccccCccC
Q 048153           93 IYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNKLICHISPQIGNLTRIQTLNLSHNDLIGTIP-STFSNLKH  171 (257)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~  171 (257)
                                                 ..+.|++|++++|.++.. + .+..+++|++|++++|.++.... ..+..+++
T Consensus        91 ---------------------------~~~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          91 ---------------------------VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ---------------------------HHHHCCEEECSEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ---------------------------cccccccccccccccccc-c-cccccccccccccccchhccccccccccCCCc
Confidence                                       045689999999998844 2 47778899999999999985432 46788999


Q ss_pred             CCEEEccCCcccccCChh----------hhcCCCCCEEEccCCccc
Q 048153          172 IESLDLSYNQLNGKIPLQ----------LVELNTLAVFSVAHNNLS  207 (257)
Q Consensus       172 L~~L~l~~n~l~~~~~~~----------~~~~~~L~~L~L~~n~l~  207 (257)
                      |+.|++++|.+....+..          +..+|+|+.||  +..+.
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999999999886543321          56789999987  44554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-12  Score=90.73  Aligned_cols=117  Identities=16%  Similarity=0.196  Sum_probs=82.3

Q ss_pred             ccccceEEcccC-ccccccCCCcCCCCCcCEEeccCCccccCCCccccCccCCCEEEccCCcccccCChhhhcCCCCCEE
Q 048153          121 VSYLSGLDLSCN-KLICHISPQIGNLTRIQTLNLSHNDLIGTIPSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVF  199 (257)
Q Consensus       121 ~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  199 (257)
                      .+++++|++.+| .++...+..|.++++|+.|++++|+|+.+.+.+|..+++|++|++++|+++...+..+. ...|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccccc
Confidence            456777888665 47766677889999999999999999988888999999999999999999844444444 4579999


Q ss_pred             EccCCcccCCC-ChhhhhccCCCeeccccCcccccCCCCC
Q 048153          200 SVAHNNLSGKI-PEWTAQFATFSESSYEGNHFLCGLPLPI  238 (257)
Q Consensus       200 ~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~  238 (257)
                      +|++|.+.-.- ..++..........+..+.+.|.-|...
T Consensus       109 ~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l  148 (156)
T d2ifga3         109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPL  148 (156)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCS
T ss_pred             ccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHH
Confidence            99999886211 1122222223334445566666656544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=1.1e-13  Score=111.24  Aligned_cols=232  Identities=12%  Similarity=0.108  Sum_probs=133.6

Q ss_pred             CEEEccccccccc----CCccccCcccCcEeeCcCCcccc---c-------CChhhhCCCCCCeeeccCceecccCCCCC
Q 048153            1 MILDLSYNRLNGS----IPDLVDGLSQLSHLILAHNNLEG---K-------VPVQLCRLNQLQLLDLSNNNLHGLIPPCF   66 (257)
Q Consensus         1 ~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~---~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   66 (257)
                      +.|+|++|.+...    +...+...++|+.++++++....   .       +...+...++|+.|++++|.+.......+
T Consensus        34 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  113 (344)
T d2ca6a1          34 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  113 (344)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccch
Confidence            4688888887632    33456677888888888765431   1       11234556788889988887754211111


Q ss_pred             -----cCCcccccccCCCCCCCCcchhhhhhhh------hhhcccchhhccccccccccccc------cccccccceEEc
Q 048153           67 -----DNTTLHESYSNGSSLKPFETSFLVKNIY------IYREKKILEIFEFTTKNIAYTYQ------GRVVSYLSGLDL  129 (257)
Q Consensus        67 -----~~~~l~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~L~~L~l  129 (257)
                           ....+..+....+.+.............      .......++.+.+..+.+.....      ....+.++++++
T Consensus       114 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L  193 (344)
T d2ca6a1         114 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM  193 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             hhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccc
Confidence                 1122344444444332211111111110      01112233334444333322111      122467888999


Q ss_pred             ccCcccc-----ccCCCcCCCCCcCEEeccCCccccC----CCccccCccCCCEEEccCCcccccCChhh----hc--CC
Q 048153          130 SCNKLIC-----HISPQIGNLTRIQTLNLSHNDLIGT----IPSTFSNLKHIESLDLSYNQLNGKIPLQL----VE--LN  194 (257)
Q Consensus       130 s~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~--~~  194 (257)
                      ++|.+..     .+...+..+++|++|++++|.++..    ....+..+++|+.|++++|.+++.....+    ..  .+
T Consensus       194 ~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~  273 (344)
T d2ca6a1         194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI  273 (344)
T ss_dssp             CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred             ccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCC
Confidence            8888753     1344567788899999999887643    23445677889999999998875433333    22  36


Q ss_pred             CCCEEEccCCcccCCC----Chhhh-hccCCCeeccccCcccc
Q 048153          195 TLAVFSVAHNNLSGKI----PEWTA-QFATFSESSYEGNHFLC  232 (257)
Q Consensus       195 ~L~~L~L~~n~l~~~~----~~~~~-~~~~L~~l~l~~n~~~~  232 (257)
                      .|++|++++|++....    ...+. ++++|+.|++++|.+..
T Consensus       274 ~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            7899999999886432    33332 46789999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-12  Score=101.74  Aligned_cols=177  Identities=21%  Similarity=0.207  Sum_probs=127.5

Q ss_pred             CEEEccccccccc-CCccccCcccCcEeeCcCCcccccCChhhhCCCCCCeeeccCce-ecccCCCCCcCCcccccccCC
Q 048153            1 MILDLSYNRLNGS-IPDLVDGLSQLSHLILAHNNLEGKVPVQLCRLNQLQLLDLSNNN-LHGLIPPCFDNTTLHESYSNG   78 (257)
Q Consensus         1 ~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~~~~~~   78 (257)
                      ++||++++.+... +...++.+++|++|+++++.+.+..+..++.+++|++|+++++. ++..        .+..     
T Consensus        49 ~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~--------~l~~-----  115 (284)
T d2astb2          49 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--------ALQT-----  115 (284)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH--------HHHH-----
T ss_pred             CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc--------ccch-----
Confidence            5799999998743 45568899999999999999987778889999999999999864 3210        0000     


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhccccccccccccccccccccceEEcccCc-ccc-ccCCCc-CCCCCcCEEeccC
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTYQGRVVSYLSGLDLSCNK-LIC-HISPQI-GNLTRIQTLNLSH  155 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-~~~-~~~~~~-~~l~~L~~L~l~~  155 (257)
                                                            .....++|++|+++++. ++. .....+ ...+.|+.|++++
T Consensus       116 --------------------------------------l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2         116 --------------------------------------LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             --------------------------------------HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             --------------------------------------hhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence                                                  00115678999998864 321 111122 2346799999987


Q ss_pred             Cc--cccC-CCccccCccCCCEEEccCC-cccccCChhhhcCCCCCEEEccCC-cccCCCChhhhhccCCCeeccccC
Q 048153          156 ND--LIGT-IPSTFSNLKHIESLDLSYN-QLNGKIPLQLVELNTLAVFSVAHN-NLSGKIPEWTAQFATFSESSYEGN  228 (257)
Q Consensus       156 n~--l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~l~l~~n  228 (257)
                      +.  ++.. ....+..+++|++|++++| .+++.....+.++++|++|++++| .+.+.....++++++|+.++++++
T Consensus       158 ~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            53  4432 2223356789999999986 477667778888999999999996 566666667888999999999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.1e-13  Score=112.03  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=16.6

Q ss_pred             EEEcccccccc----cCCccccCcccCcEeeCcCCccc
Q 048153            2 ILDLSYNRLNG----SIPDLVDGLSQLSHLILAHNNLE   35 (257)
Q Consensus         2 ~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~   35 (257)
                      +|+|++|.++.    .++..++.+++|++|++++|+++
T Consensus        31 ~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1          31 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            45555555442    12233445555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.8e-12  Score=104.17  Aligned_cols=59  Identities=29%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             CEEEccccccccc----CCcccc-CcccCcEeeCcCCccccc----CChhhhCCCCCCeeeccCceec
Q 048153            1 MILDLSYNRLNGS----IPDLVD-GLSQLSHLILAHNNLEGK----VPVQLCRLNQLQLLDLSNNNLH   59 (257)
Q Consensus         1 ~~L~L~~n~i~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~   59 (257)
                      +.|||++|.|+..    +.+.+. ...+|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        58 ~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          58 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            5799999998732    222232 235799999999998743    3455678899999999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=9.9e-12  Score=99.57  Aligned_cols=237  Identities=11%  Similarity=0.113  Sum_probs=143.8

Q ss_pred             CCccccCcccCcEeeCcCCcccccC----ChhhhCCCCCCeeeccCceecccCCC-----------CCcCCcccccccCC
Q 048153           14 IPDLVDGLSQLSHLILAHNNLEGKV----PVQLCRLNQLQLLDLSNNNLHGLIPP-----------CFDNTTLHESYSNG   78 (257)
Q Consensus        14 ~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~-----------~~~~~~l~~~~~~~   78 (257)
                      +...+.....++.|++++|.+....    ...+...++|+.++++++........           ......+..+....
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            3445677889999999999886432    33456778999999987754322110           00112344455444


Q ss_pred             CCCCCCcchhhhhhhhhhhcccchhhcccccccccccc---------------ccccccccceEEcccCcccc----ccC
Q 048153           79 SSLKPFETSFLVKNIYIYREKKILEIFEFTTKNIAYTY---------------QGRVVSYLSGLDLSCNKLIC----HIS  139 (257)
Q Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~L~~L~ls~n~~~~----~~~  139 (257)
                      +.+.......+..   .......++.+.+..+.+....               .....+.++.+.+++|.+..    .+.
T Consensus       103 n~i~~~~~~~l~~---~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         103 NAFGPTAQEPLID---FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCCCTTTHHHHHH---HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             cccccccccchhh---hhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            4443322222222   2223334455555544432210               01224568888888887652    122


Q ss_pred             CCcCCCCCcCEEeccCCccccC-----CCccccCccCCCEEEccCCccccc----CChhhhcCCCCCEEEccCCcccCCC
Q 048153          140 PQIGNLTRIQTLNLSHNDLIGT-----IPSTFSNLKHIESLDLSYNQLNGK----IPLQLVELNTLAVFSVAHNNLSGKI  210 (257)
Q Consensus       140 ~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~  210 (257)
                      ..+...+.|+.+++++|.+...     ....+...++|+.|++++|.++..    +...+..+++|++|++++|.+.+.-
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            3345677899999999987642     234466778899999999988643    3345567899999999999987543


Q ss_pred             Chhhh----h--ccCCCeeccccCcccccCCCCC----c--cCcccccccccCCc
Q 048153          211 PEWTA----Q--FATFSESSYEGNHFLCGLPLPI----C--RSPVTMLKASTTNK  253 (257)
Q Consensus       211 ~~~~~----~--~~~L~~l~l~~n~~~~~~~~~~----~--~~~l~~l~~~~~~~  253 (257)
                      ...++    .  .+.|++|++++|.+..+....+    .  .+.++.|++++|.-
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            33332    2  3578999999998654221111    1  25788888888753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.1e-09  Score=77.66  Aligned_cols=67  Identities=19%  Similarity=0.157  Sum_probs=35.2

Q ss_pred             cCccCCCEEEccCCcccccC--ChhhhcCCCCCEEEccCCcccCCCChhhhhccCCCeeccccCccccc
Q 048153          167 SNLKHIESLDLSYNQLNGKI--PLQLVELNTLAVFSVAHNNLSGKIPEWTAQFATFSESSYEGNHFLCG  233 (257)
Q Consensus       167 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  233 (257)
                      ..++.|++|++++|+++...  +..+..+++|+.|++++|.+.+..+-.......|+.+++++||+.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            44556666666666665321  23345556666666666666533222222334566666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.4e-10  Score=78.65  Aligned_cols=89  Identities=22%  Similarity=0.256  Sum_probs=67.8

Q ss_pred             CCCcCCCCCcCEEeccCCccccCC--CccccCccCCCEEEccCCcccccCChhhhcCCCCCEEEccCCcccCCCCh----
Q 048153          139 SPQIGNLTRIQTLNLSHNDLIGTI--PSTFSNLKHIESLDLSYNQLNGKIPLQLVELNTLAVFSVAHNNLSGKIPE----  212 (257)
Q Consensus       139 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----  212 (257)
                      +..+..++.|++|++++|.++...  +..+..+++|+.|++++|+++............|+.+++++|.+.+....    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            334456889999999999999653  34567889999999999999954443445567899999999999865442    


Q ss_pred             ---hhhhccCCCeeccccCc
Q 048153          213 ---WTAQFATFSESSYEGNH  229 (257)
Q Consensus       213 ---~~~~~~~L~~l~l~~n~  229 (257)
                         .+..+|+|+.||  |.+
T Consensus       138 ~~~i~~~~P~L~~LD--g~~  155 (162)
T d1koha1         138 ISAIRERFPKLLRLD--GHE  155 (162)
T ss_dssp             HHHHHTTSTTCCEET--TEE
T ss_pred             HHHHHHHCCCCCEEC--cCC
Confidence               245689999885  544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=1.1e-06  Score=62.12  Aligned_cols=109  Identities=8%  Similarity=0.066  Sum_probs=75.3

Q ss_pred             ccccceEEcccC-ccccc----cCCCcCCCCCcCEEeccCCccccCCC----ccccCccCCCEEEccCCcccccC----C
Q 048153          121 VSYLSGLDLSCN-KLICH----ISPQIGNLTRIQTLNLSHNDLIGTIP----STFSNLKHIESLDLSYNQLNGKI----P  187 (257)
Q Consensus       121 ~~~L~~L~ls~n-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~----~  187 (257)
                      .+.|++|+++++ .++..    +...+...+.|++|++++|.+.....    +.+...+.|+.|++++|.++...    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            467999999874 34321    23356677889999999998874332    33445678999999999887543    2


Q ss_pred             hhhhcCCCCCEEEccCCcccCC-------CChhhhhccCCCeeccccCc
Q 048153          188 LQLVELNTLAVFSVAHNNLSGK-------IPEWTAQFATFSESSYEGNH  229 (257)
Q Consensus       188 ~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~~~~L~~l~l~~n~  229 (257)
                      ..+...++|++|++++|.+...       +...+...++|+.++++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3455668899999998876532       23344456888888887664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=2.2e-05  Score=55.15  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=75.7

Q ss_pred             CCCCCcCEEeccCC-ccccC----CCccccCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCCCC--
Q 048153          143 GNLTRIQTLNLSHN-DLIGT----IPSTFSNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGKIP--  211 (257)
Q Consensus       143 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~--  211 (257)
                      ...+.|+.|+++++ .++..    ...++...++|+.|++++|.+....    ...+...+.|++|++++|.+.+.-.  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578999999975 46532    2334556789999999999987532    2345567999999999999885322  


Q ss_pred             --hhhhhccCCCeeccccCcccc---cCCCCC-----ccCcccccccccCC
Q 048153          212 --EWTAQFATFSESSYEGNHFLC---GLPLPI-----CRSPVTMLKASTTN  252 (257)
Q Consensus       212 --~~~~~~~~L~~l~l~~n~~~~---~~~~~~-----~~~~l~~l~~~~~~  252 (257)
                        .++...++|++|++++|.+..   ..-..+     .+++++.++++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              344556889999999885432   100111     35788888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.48  E-value=1.2e-05  Score=56.53  Aligned_cols=110  Identities=12%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             ccccceEEccc-Ccccc----ccCCCcCCCCCcCEEeccCCccccCCCc----cccCccCCCEEEccCCccccc----CC
Q 048153          121 VSYLSGLDLSC-NKLIC----HISPQIGNLTRIQTLNLSHNDLIGTIPS----TFSNLKHIESLDLSYNQLNGK----IP  187 (257)
Q Consensus       121 ~~~L~~L~ls~-n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~----~~  187 (257)
                      .+.|++|.+++ +.++.    .+...+...++|++|++++|.++.....    .+...++++.+++++|.+...    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46788898987 34431    1233456788899999999988754332    345567899999999987643    23


Q ss_pred             hhhhcCCCCCEEEcc--CCcccC----CCChhhhhccCCCeeccccCcc
Q 048153          188 LQLVELNTLAVFSVA--HNNLSG----KIPEWTAQFATFSESSYEGNHF  230 (257)
Q Consensus       188 ~~~~~~~~L~~L~L~--~n~l~~----~~~~~~~~~~~L~~l~l~~n~~  230 (257)
                      ..+...++|+.++|+  +|.+..    .+...+...++|+.|+++.+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            455667888876664  566653    2344555778999998887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=6.2e-05  Score=52.65  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             cCCCCCcCEEeccC-CccccC----CCccccCccCCCEEEccCCcccccC----ChhhhcCCCCCEEEccCCcccCCC--
Q 048153          142 IGNLTRIQTLNLSH-NDLIGT----IPSTFSNLKHIESLDLSYNQLNGKI----PLQLVELNTLAVFSVAHNNLSGKI--  210 (257)
Q Consensus       142 ~~~l~~L~~L~l~~-n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~--  210 (257)
                      ....+.|++|++++ +.++..    ...++...++|+.|++++|.+....    ...+...+.++.+++++|.+....  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34568899999997 456533    2334457789999999999987543    334566799999999999987432  


Q ss_pred             --ChhhhhccCCCeecc--ccCcccccCCCCC-----ccCcccccccccCC
Q 048153          211 --PEWTAQFATFSESSY--EGNHFLCGLPLPI-----CRSPVTMLKASTTN  252 (257)
Q Consensus       211 --~~~~~~~~~L~~l~l--~~n~~~~~~~~~~-----~~~~l~~l~~~~~~  252 (257)
                        ...+...++|+.+++  ++|++..+.-.-+     .+..++.|+++.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              244556788887555  4566543221111     56788888887654