Citrus Sinensis ID: 048172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEccccccHHHHHHHHHHHHHccccccccccccccccccEEEcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHcccccccccEEEEEEccccccHHHEcHHHHccHHHHHHHHHHHHHHcccccHHHccccccEEEEEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
MELEITelrlglpgrdgcdsglnsssnnnknekkrafsdicdeanyetngerkinptksqvvgwppvcsyrrknsfnekdrvESSKMYVKVSmdgapflrkidlgmhqgYPDLAMALEKLFGCfglsealkdadssefvpiyedkdgdwmlagdvpwe
Flexible Loop (DISEMBL)
MELEITELrlglpgrdgcdsglnsssnnnknekkrafsDICDEANyetngerkinptksqvvgwppvcsyrrknsfnekdrvesskMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEalkdadssefvpiyedkdgdwmlagdvpwe
Low Complexity Region (SEG)
MELEITELRLGLPGRDGCDSGLnsssnnnknekkRAFSDICDEANYETNGERKINPTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE
Disordered region (IsUnstruct)
************************************************************VVGWPPVCSYR***************MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAG*****
Disordered Region (DISOPRED)
MELEITELRLGL******************************************************************************VSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPW*
Disordered Region (DISEMBL)
MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE
Disordered Region (DISPRO)
MELEITELRLGLPG******************************************TKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
P13088	195	Auxin-induced protein AUX	yes	no	0.930	0.753	0.687	2e-55
P32293	194	Auxin-induced protein 22A	N/A	no	0.917	0.747	0.633	8e-49
O24541	188	Auxin-induced protein 22C	N/A	no	0.905	0.760	0.636	1e-46
O24409	197	Auxin-responsive protein	yes	no	0.930	0.746	0.558	1e-42
P49680	179	Auxin-induced protein IAA	N/A	no	0.867	0.765	0.616	2e-39
P33078	163	Auxin-responsive protein	no	no	0.841	0.815	0.594	3e-35
Q38824	189	Auxin-responsive protein	no	no	0.936	0.783	0.485	8e-35
O24542	193	Auxin-induced protein 22D	N/A	no	0.955	0.782	0.469	4e-33
P33077	186	Auxin-responsive protein	no	no	0.930	0.790	0.474	7e-32
Q38822	189	Auxin-responsive protein	no	no	0.993	0.830	0.475	1e-31

>sp|P13088|AUX22_SOYBN Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1

 Score =  214 bits (545), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 125/160 (78%), Gaps = 13/160 (8%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDI----CDEANYETNGERKINPTK 58
           LEITELRLGLP     D+    S  N KNEKKRAFS+I     DE +    G+RK+   K
Sbjct: 8   LEITELRLGLP-----DAEHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKMETNK 62

Query: 59  SQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALE 118
           SQVVGWPPVCSYR+KNS NE     +SKMYVKVSMDGAPFLRKIDLG+H+GY DLA+AL+
Sbjct: 63  SQVVGWPPVCSYRKKNSMNEG----ASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALD 118

Query: 119 KLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           KLFGC+G+ EALK+AD+SE VPIYEDKDGDWML GDVPWE
Sbjct: 119 KLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWE 158

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Glycine max (taxid: 3847)

>sp|P32293|AX22A_VIGRR Auxin-induced protein 22A OS=Vigna radiata var. radiata GN=AUX22A PE=2 SV=1

 Score =  192 bits (487), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 122/161 (75%), Gaps = 16/161 (9%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEK-KRAFSDICDEANYETN----GERKINPT 57
           LEITELRLGLP     D+   + +N N  +K KR FS+I D  +  ++    G+RK+   
Sbjct: 8   LEITELRLGLP-----DAEHVAVANKNGEKKNKRVFSEIDDVGDENSSSGGGGDRKME-N 61

Query: 58  KSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMAL 117
           K+QVVGWPPVCSYR+KNS NE     +SKMYVKVSMDGAPFLRK+DLGMH+GY DLA AL
Sbjct: 62  KNQVVGWPPVCSYRKKNSVNE-----ASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFAL 116

Query: 118 EKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           EKLFGC+G+ EALK+ ++ E VPIYEDKDGDWML GDVPWE
Sbjct: 117 EKLFGCYGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWE 157

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|O24541|AX22C_VIGRR Auxin-induced protein 22C OS=Vigna radiata var. radiata GN=AUX22C PE=2 SV=1

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 120/157 (76%), Gaps = 14/157 (8%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDE-ANYETNGERKINPTKSQV 61
           LEITELRLGLPG      G N++  +    KKR FSDI  E ++ E +G+++   TK+QV
Sbjct: 8   LEITELRLGLPGA----GGENNTDKDKNKNKKRVFSDIEGENSSSEEDGKKE---TKNQV 60

Query: 62  VGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLF 121
           VGWPPVCSYR+KN+ NE       K+YVKVSMDGAPFLRKIDL MH+GY DLA AL+K F
Sbjct: 61  VGWPPVCSYRKKNTVNE------PKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFF 114

Query: 122 GCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           GC+G+ EALKDA+++E VPIYEDKDGDWML GDVPWE
Sbjct: 115 GCYGICEALKDAENAEHVPIYEDKDGDWMLVGDVPWE 151

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|O24409|IAA19_ARATH Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 110/172 (63%), Gaps = 25/172 (14%)

Query: 1   MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAF-----------SDICDEANYETN 49
           + LEITELRLGLPGRD  +          K  KKRAF           SD C+     + 
Sbjct: 6   LGLEITELRLGLPGRDVAE----------KMMKKRAFTEMNMTSSGSNSDQCESGVVSSG 55

Query: 50  GE-RKIN---PTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLG 105
           G+  K+N     KSQVVGWPPVCSYR+KNS  E    +    YVKVSMDG P+LRK+DLG
Sbjct: 56  GDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLG 115

Query: 106 MHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPW 157
             QGY DLA AL+KLFG  G+  ALKD D+ E+V IYEDKDGDWMLAGDVPW
Sbjct: 116 SSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPW 167

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49680|IAA6_PEA Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1

 Score =  161 bits (407), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 112/159 (70%), Gaps = 22/159 (13%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNG---ERKINPTKS 59
           LEITELRLGL           S     KNEKKR FS+I  +   E NG   +RK    K+
Sbjct: 8   LEITELRLGL-----------SCGEPKKNEKKRMFSEI--DGGVEENGGSGDRKSVDKKN 54

Query: 60  QVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEK 119
           QVVGWPPVCSYR+KN        E SKMY+KVSMDGAP+LRKIDL +H+GY +LA+ALEK
Sbjct: 55  QVVGWPPVCSYRKKNMN------EGSKMYMKVSMDGAPYLRKIDLCLHKGYLELALALEK 108

Query: 120 LFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           LF C G+ EALKDA++ E VPIYEDKDGDWML GDVPWE
Sbjct: 109 LFDCCGIEEALKDAENCEHVPIYEDKDGDWMLVGDVPWE 147

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Pisum sativum (taxid: 3888)

>sp|P33078|IAA5_ARATH Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 106/158 (67%), Gaps = 25/158 (15%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTK-SQV 61
           LEITELRLGLPG D   SG + S       KKRA        + E   + K  P K SQV
Sbjct: 10  LEITELRLGLPG-DIVVSGESISG------KKRA--------SPEVEIDLKCEPAKKSQV 54

Query: 62  VGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLF 121
           VGWPPVCSYRRKNS    +R +SS  YVKVS+DGA FLRKIDL M++ Y DLA AL+ LF
Sbjct: 55  VGWPPVCSYRRKNSL---ERTKSS--YVKVSVDGAAFLRKIDLEMYKCYQDLASALQILF 109

Query: 122 GCF-GLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           GC+    + LK+   SE VPIYEDKDGDWMLAGDVPWE
Sbjct: 110 GCYINFDDTLKE---SECVPIYEDKDGDWMLAGDVPWE 144

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38824|IAA6_ARATH Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2

 Score =  145 bits (367), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 102/169 (60%), Gaps = 21/169 (12%)

Query: 1   MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPT--- 57
           + LEITELRLGLPG +  +  +  SS     +KKR  SD+   +  +T  E  +  +   
Sbjct: 6   LALEITELRLGLPGDNYSEISVCGSSK----KKKRVLSDMMTSSALDTENENSVVSSVED 61

Query: 58  ------KSQVVGWPPVCSYRRKNSFNEKDRVESSKM--YVKVSMDGAPFLRKIDLGMHQG 109
                 KSQ VGWPPVCSYRRK     K+  E+SK   YVKVSMDG P++RKIDLG    
Sbjct: 62  ESLPVVKSQAVGWPPVCSYRRK-----KNNEEASKAIGYVKVSMDGVPYMRKIDLGSSNS 116

Query: 110 YPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           Y +L   LE LFGC G+  A K+    E++ IYEDKD DWML GDVPW+
Sbjct: 117 YINLVTVLENLFGCLGIGVA-KEGKKCEYIIIYEDKDRDWMLVGDVPWQ 164

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24542|AX22D_VIGRR Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1

 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 101/164 (61%), Gaps = 13/164 (7%)

Query: 1   MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYE-----TNGERKIN 55
           + L+ TELRLGLPG D  +    + SN      KR+  +  DE +       T  +  + 
Sbjct: 12  LNLKATELRLGLPGSDEPEKRATARSN------KRSSPEASDEESISNGSDVTKEDNVVP 65

Query: 56  PTKSQVVGWPPVCSYRRKNSFNEKDR-VESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLA 114
           P K+QVVGWPP+ SYR+ N   +K+   E + MYVKVSM GAP+LRKIDL +++ YP+L 
Sbjct: 66  PAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELL 125

Query: 115 MALEKLFGC-FGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPW 157
            ALE +F C FG     +  + SE+ P YEDKDGDWML GDVPW
Sbjct: 126 KALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 169

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|P33077|IAA4_ARATH Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 95/158 (60%), Gaps = 11/158 (6%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVV 62
           L+ TELRLGLPG +   S   S+        KR   +  ++    T      +P K+Q+V
Sbjct: 13  LKATELRLGLPGTEETVSCGKSN--------KRVLPEATEKEIESTGKTETASPPKAQIV 64

Query: 63  GWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFG 122
           GWPPV SYR+ N   +K   E    YVKVSMDGAP+LRKIDL M++ YP+L  +LE +F 
Sbjct: 65  GWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK 124

Query: 123 CFGLSEALKDA--DSSEFVPIYEDKDGDWMLAGDVPWE 158
            F + E  +      S+FVP YEDKDGDWML GDVPWE
Sbjct: 125 -FSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 5/162 (3%)

Query: 1   MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQ 60
           + L+ TELRLGLPG D         S  N N K+   +D   E    +       P K+Q
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 61  VVGWPPVCSYRRKNSFNEKDRVES--SKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALE 118
           +VGWPPV SYR+ N  ++K+  E     +YVKVSMDGAP+LRKIDL  ++GY +L  ALE
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALE 124

Query: 119 KLFGCFGLSEALK--DADSSEFVPIYEDKDGDWMLAGDVPWE 158
            +F  F + E  +      S+FVP YEDKDGDWML GDVPWE
Sbjct: 125 VMFK-FSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
255552971	194	Auxin-induced protein AUX22, putative [R	0.930	0.757	0.687	1e-55
224058761	189	predicted protein [Populus trichocarpa]	0.911	0.761	0.692	8e-55
359482957	192	PREDICTED: auxin-induced protein 22A-lik	0.955	0.786	0.683	2e-54
147815559	192	hypothetical protein VITISV_010218 [Viti	0.955	0.786	0.683	3e-54
351725121	195	auxin-induced protein AUX22 [Glycine max	0.930	0.753	0.687	1e-53
356519427	187	PREDICTED: auxin-induced protein AUX22-l	0.905	0.764	0.698	4e-53
255637606	169	unknown [Glycine max]	0.905	0.846	0.698	5e-53
429326566	183	hypothetical protein [Populus tomentosa]	0.886	0.765	0.666	9e-51
224073804	184	predicted protein [Populus trichocarpa]	0.886	0.760	0.668	1e-50
388503438	188	unknown [Lotus japonicus]	0.898	0.755	0.658	9e-50

>gi|255552971|ref|XP_002517528.1| Auxin-induced protein AUX22, putative [Ricinus communis] gi|223543160|gb|EEF44692.1| Auxin-induced protein AUX22, putative [Ricinus communis]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/163 (68%), Positives = 129/163 (79%), Gaps = 16/163 (9%)

Query: 1   MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDIC-DEAN----YETNGERKIN 55
           + LEITELRLGLPG D             KNEKKR FS++  DE N      T  ++KI 
Sbjct: 6   LGLEITELRLGLPGGD----------QGIKNEKKRVFSEVSGDEGNSASSTTTTCDQKI- 54

Query: 56  PTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAM 115
           PTKSQVVGWPPVCSYR++NSFNEK+R+E+SK+YVKVSMDGAPFLRKIDLG H+ Y DL +
Sbjct: 55  PTKSQVVGWPPVCSYRKRNSFNEKERLETSKLYVKVSMDGAPFLRKIDLGTHKEYSDLVL 114

Query: 116 ALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           ALEKLFGCFG+ +ALKDADSS++VPIYEDKDGDWML GDVPWE
Sbjct: 115 ALEKLFGCFGIGKALKDADSSDYVPIYEDKDGDWMLVGDVPWE 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058761|ref|XP_002299626.1| predicted protein [Populus trichocarpa] gi|222846884|gb|EEE84431.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 121/156 (77%), Gaps = 12/156 (7%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVV 62
           LEITELRLG PG          S N  KNEKKR FS++  EAN  T+G +    T SQVV
Sbjct: 7   LEITELRLGPPG----------SENGPKNEKKRVFSELSGEANSTTDGRK--TQTTSQVV 54

Query: 63  GWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFG 122
           GWPPVCSYR+KNSFNEKD  E+SK+YVKVSMDGAPFLRK+DLGMH+ Y DL +ALEKLFG
Sbjct: 55  GWPPVCSYRKKNSFNEKDSHETSKIYVKVSMDGAPFLRKVDLGMHKEYSDLVVALEKLFG 114

Query: 123 CFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           CFG+ +ALKD D  E+VPIYEDKDGDWML GDVPWE
Sbjct: 115 CFGIGKALKDTDDCEYVPIYEDKDGDWMLVGDVPWE 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482957|ref|XP_003632865.1| PREDICTED: auxin-induced protein 22A-like [Vitis vinifera] gi|313765829|gb|ADR80322.1| indole-3-acetic acid-induced protein 19 [Vitis vinifera]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 127/158 (80%), Gaps = 7/158 (4%)

Query: 3   LEITELRLGLPGRDGCD--SGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQ 60
           LEITELRLGLPG    +  +G+N+     +NEKKR FS++  +++  T  ERK    K+Q
Sbjct: 5   LEITELRLGLPGHADSNHLAGVNAVE---RNEKKRVFSEMSGDSS-ATTCERKAQ-NKNQ 59

Query: 61  VVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKL 120
           VVGWPPVCSYRRKNSFN+KDR E++KMYVKVSMDGAPFLRKIDL  HQGY +L  A E+L
Sbjct: 60  VVGWPPVCSYRRKNSFNDKDRTEATKMYVKVSMDGAPFLRKIDLSSHQGYFNLVTAFEEL 119

Query: 121 FGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           FGCFG+ EALKDADSSE++PIYEDKDGDWML GDVPWE
Sbjct: 120 FGCFGIGEALKDADSSEYIPIYEDKDGDWMLVGDVPWE 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815559|emb|CAN70530.1| hypothetical protein VITISV_010218 [Vitis vinifera]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 126/158 (79%), Gaps = 7/158 (4%)

Query: 3   LEITELRLGLPGRDGCD--SGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQ 60
           LEITELRLGLPG       +G+N+     +NEKKR FS++  +++  T  ERK    K+Q
Sbjct: 5   LEITELRLGLPGHADSHHPAGVNAVE---RNEKKRVFSEMSGDSS-ATTCERKAQ-NKNQ 59

Query: 61  VVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKL 120
           VVGWPPVCSYRRKNSFN+KDR E++KMYVKVSMDGAPFLRKIDL  HQGY +L  A E+L
Sbjct: 60  VVGWPPVCSYRRKNSFNDKDRTEATKMYVKVSMDGAPFLRKIDLSSHQGYFNLVTAFEEL 119

Query: 121 FGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           FGCFG+ EALKDADSSE++PIYEDKDGDWML GDVPWE
Sbjct: 120 FGCFGIGEALKDADSSEYIPIYEDKDGDWMLVGDVPWE 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725121|ref|NP_001237849.1| auxin-induced protein AUX22 [Glycine max] gi|114733|sp|P13088.1|AUX22_SOYBN RecName: Full=Auxin-induced protein AUX22 gi|169919|gb|AAA33944.1| auxin-regulated protein (Aux22) [Glycine max]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/160 (68%), Positives = 125/160 (78%), Gaps = 13/160 (8%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDI----CDEANYETNGERKINPTK 58
           LEITELRLGLP     D+    S  N KNEKKRAFS+I     DE +    G+RK+   K
Sbjct: 8   LEITELRLGLP-----DAEHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKMETNK 62

Query: 59  SQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALE 118
           SQVVGWPPVCSYR+KNS NE     +SKMYVKVSMDGAPFLRKIDLG+H+GY DLA+AL+
Sbjct: 63  SQVVGWPPVCSYRKKNSMNEG----ASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALD 118

Query: 119 KLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           KLFGC+G+ EALK+AD+SE VPIYEDKDGDWML GDVPWE
Sbjct: 119 KLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWE 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519427|ref|XP_003528374.1| PREDICTED: auxin-induced protein AUX22-like [Glycine max]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 122/156 (78%), Gaps = 13/156 (8%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVV 62
           LEITELRLGLP  +         +  NKNEKKRAFS I DE N  + G+RKI   KSQVV
Sbjct: 8   LEITELRLGLPDAEHV-------TVVNKNEKKRAFSQIDDE-NSSSGGDRKIKTNKSQVV 59

Query: 63  GWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFG 122
           GWPPVCSYR+KNS NE      SKMYVKVSMDGAPFLRKIDLG+H+GY DLA+AL+KLFG
Sbjct: 60  GWPPVCSYRKKNSMNE-----GSKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFG 114

Query: 123 CFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
            +G+ EALK+AD+SE VPIYEDKDGDWML GDVPWE
Sbjct: 115 SYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWE 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637606|gb|ACU19128.1| unknown [Glycine max]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 122/156 (78%), Gaps = 13/156 (8%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVV 62
           LEITELRLGLP  +         +  NKNEKKRAFS I DE N  + G+RKI   KSQVV
Sbjct: 8   LEITELRLGLPDAEHV-------TVVNKNEKKRAFSQIDDE-NSSSGGDRKIKTNKSQVV 59

Query: 63  GWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFG 122
           GWPPVCSYR+KNS NE      SKMYVKVSMDGAPFLRKIDLG+H+GY DLA+AL+KLFG
Sbjct: 60  GWPPVCSYRKKNSMNE-----GSKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFG 114

Query: 123 CFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
            +G+ EALK+AD+SE VPIYEDKDGDWML GDVPWE
Sbjct: 115 SYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWE 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326566|gb|AFZ78623.1| hypothetical protein [Populus tomentosa]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 104/156 (66%), Positives = 122/156 (78%), Gaps = 16/156 (10%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVV 62
           LEITELRLGLPG D          + +KN+KKR FS++  EAN  T+ +RK+   KSQVV
Sbjct: 7   LEITELRLGLPGSD----------DGHKNDKKRVFSEVSGEANSPTD-DRKVQ-AKSQVV 54

Query: 63  GWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFG 122
           GWPPVCSYR+  SFNE+DR+E+SK+YVKVSMDGAPFLRKIDLGM + Y DL +ALE+LFG
Sbjct: 55  GWPPVCSYRKNISFNERDRLETSKIYVKVSMDGAPFLRKIDLGMQKEYSDLVVALERLFG 114

Query: 123 CFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           CFG  +ALKD    E+VPIYEDKDGDWML GDVPWE
Sbjct: 115 CFGTGKALKD----EYVPIYEDKDGDWMLVGDVPWE 146

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073804|ref|XP_002304179.1| predicted protein [Populus trichocarpa] gi|222841611|gb|EEE79158.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 124/157 (78%), Gaps = 17/157 (10%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETNGERKINPTKSQVV 62
           LEITELRLGLPG D          + +KN+KKR FS++  EAN  T+ +RK+  TKSQVV
Sbjct: 7   LEITELRLGLPGSD----------DGHKNDKKRVFSEVSGEANSTTD-DRKVQ-TKSQVV 54

Query: 63  GWPPVCSYRRKNSFNEKDRV-ESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLF 121
           GWPPVCSYR+  SFNE+DR  E+SK+YVKVSMDGAPFLRKIDLGMH+ Y DL +ALE+LF
Sbjct: 55  GWPPVCSYRKNISFNERDRHHETSKIYVKVSMDGAPFLRKIDLGMHKEYSDLVVALERLF 114

Query: 122 GCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           GC+G+ +ALKD    E+VPIYEDKDGDWML GDVPWE
Sbjct: 115 GCYGIGKALKD----EYVPIYEDKDGDWMLVGDVPWE 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503438|gb|AFK39785.1| unknown [Lotus japonicus]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 115/158 (72%), Gaps = 16/158 (10%)

Query: 3   LEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEANYETN--GERKINPTKSQ 60
           LEITELRLGLPG             ++KNEKKR FS+I      E +  GER++      
Sbjct: 8   LEITELRLGLPG---------GERMSDKNEKKRVFSEIEGGGGDENSRSGERRVEKKSEV 58

Query: 61  VVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKL 120
           VVGWPPVCSYR+KNS NE     +SKMYVKVSMDGAPFLRKIDL MH+GY DLA ALEKL
Sbjct: 59  VVGWPPVCSYRKKNSVNE-----ASKMYVKVSMDGAPFLRKIDLSMHKGYSDLAFALEKL 113

Query: 121 FGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
           FGC+G+ EALKDAD  E VPIYEDKDGDWML GDVPWE
Sbjct: 114 FGCYGMVEALKDADKCEHVPIYEDKDGDWMLVGDVPWE 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2090141	197	IAA19 "indole-3-acetic acid in	0.981	0.786	0.562	2.2e-41
TAIR|locus:2196573	163	IAA5 "indole-3-acetic acid ind	0.677	0.656	0.641	1.3e-31
TAIR|locus:2011461	189	IAA6 "indole-3-acetic acid 6"	0.936	0.783	0.473	2e-31
TAIR|locus:2170862	186	ATAUX2-11 "AT5G43700" [Arabido	0.936	0.795	0.465	3e-30
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	0.981	0.820	0.469	6.2e-30
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.613	0.416	0.545	2e-28
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.620	0.381	0.539	2.5e-28
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.639	0.384	0.495	6.6e-28
UNIPROTKB|Q7Y1H8	195	IAA14 "Auxin-responsive protei	0.493	0.4	0.559	2.8e-27
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	0.974	0.814	0.426	4.5e-27

TAIR|locus:2090141 IAA19 "indole-3-acetic acid inducible 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 90/160 (56%), Positives = 105/160 (65%)

Query:     3 LEITELRLGLPGRDGCDSGLXXXXXXXXXXXXRAF-SDICDEANYETNGE-RKINPT--- 57
             LEITELRLGLPGRD  +  +                SD C+     + G+  K+N +   
Sbjct:     8 LEITELRLGLPGRDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGGDAEKVNDSPAA 67

Query:    58 KSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMAL 117
             KSQVVGWPPVCSYR+KNS  E    +    YVKVSMDG P+LRK+DLG  QGY DLA AL
Sbjct:    68 KSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFAL 127

Query:   118 EKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPW 157
             +KLFG  G+  ALKD D+ E+V IYEDKDGDWMLAGDVPW
Sbjct:   128 DKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPW 167

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009630 "gravitropism" evidence=NAS

GO:0009638 "phototropism" evidence=NAS

GO:0009733 "response to auxin stimulus" evidence=RCA;NAS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2196573 IAA5 "indole-3-acetic acid inducible 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 75/117 (64%), Positives = 86/117 (73%)

Query:    44 ANYETNGERKINPTK-SQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKI 102
             A+ E   + K  P K SQVVGWPPVCSYRRKNS    +R +SS  YVKVS+DGA FLRKI
Sbjct:    36 ASPEVEIDLKCEPAKKSQVVGWPPVCSYRRKNSL---ERTKSS--YVKVSVDGAAFLRKI 90

Query:   103 DLGMHQGYPDLAMALEKLFGCF-GLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
             DL M++ Y DLA AL+ LFGC+    + LK+   SE VPIYEDKDGDWMLAGDVPWE
Sbjct:    91 DLEMYKCYQDLASALQILFGCYINFDDTLKE---SECVPIYEDKDGDWMLAGDVPWE 144

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA;TAS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2011461 IAA6 "indole-3-acetic acid 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 80/169 (47%), Positives = 97/169 (57%)

Query:     1 MELEITELRLGLPGRDGCDSGLXXXXXXXXXXXXRAFSDICDEANYETNGERKINPT--- 57
             + LEITELRLGLPG    D+              R  SD+   +  +T  E  +  +   
Sbjct:     6 LALEITELRLGLPG----DNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVED 61

Query:    58 ------KSQVVGWPPVCSYRRKNSFNEKDRVESSKM--YVKVSMDGAPFLRKIDLGMHQG 109
                   KSQ VGWPPVCSYRRK + NE    E+SK   YVKVSMDG P++RKIDLG    
Sbjct:    62 ESLPVVKSQAVGWPPVCSYRRKKN-NE----EASKAIGYVKVSMDGVPYMRKIDLGSSNS 116

Query:   110 YPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
             Y +L   LE LFGC G+  A K+    E++ IYEDKD DWML GDVPW+
Sbjct:   117 YINLVTVLENLFGCLGIGVA-KEGKKCEYIIIYEDKDRDWMLVGDVPWQ 164

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP

GO:0009704 "de-etiolation" evidence=IMP

TAIR|locus:2170862 ATAUX2-11 "AT5G43700" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 75/161 (46%), Positives = 96/161 (59%)

Query:     1 MELEITELRLGLPGRDGCDSGLXXXXXXXXXXXXRAFSDICDEANYETNGERKI-NPTKS 59
             + L+ TELRLGLPG +   S              R   +   E   E+ G+ +  +P K+
Sbjct:    11 VNLKATELRLGLPGTEETVS--------CGKSNKRVLPE-ATEKEIESTGKTETASPPKA 61

Query:    60 QVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEK 119
             Q+VGWPPV SYR+ N   +K   E    YVKVSMDGAP+LRKIDL M++ YP+L  +LE 
Sbjct:    62 QIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLEN 121

Query:   120 LFGCFGLSEALKDAD--SSEFVPIYEDKDGDWMLAGDVPWE 158
             +F  F + E  +      S+FVP YEDKDGDWML GDVPWE
Sbjct:   122 MFK-FSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS;RCA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 77/164 (46%), Positives = 97/164 (59%)

Query:     1 MELEITELRLGLPGRDG-CDSGLXXXXXXXXXXXXRAFS-DICDEANYETNGERKINPTK 58
             + L+ TELRLGLPG D  C++              R  S D   E    +       P K
Sbjct:     5 VNLKETELRLGLPGTDNVCEA--KERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRK 62

Query:    59 SQVVGWPPVCSYRRKNSFNEKDRVE--SSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMA 116
             +Q+VGWPPV SYR+ N  ++K+  E     +YVKVSMDGAP+LRKIDL  ++GY +L  A
Sbjct:    63 AQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKA 122

Query:   117 LEKLFGCFGLSEAL-KDA-DSSEFVPIYEDKDGDWMLAGDVPWE 158
             LE +F  F + E   +D    S+FVP YEDKDGDWML GDVPWE
Sbjct:   123 LEVMFK-FSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 286 (105.7 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 60/110 (54%), Positives = 76/110 (69%)

Query:    58 KSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMAL 117
             K+QVVGWPPV S+R KN   EK +  +    VKVSMDGAP+LRKID+ M++ YP+L+MA 
Sbjct:    98 KAQVVGWPPVRSFR-KNVLAEKCKAAA---LVKVSMDGAPYLRKIDVAMYKSYPELSMAF 153

Query:   118 EKLFGCF-----GLSEALKDA----DSSEFVPIYEDKDGDWMLAGDVPWE 158
             + +F  F     G  + LK++    D  E+VP YEDKDGDWML GDVPWE
Sbjct:   154 QNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWE 203

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 281 (104.0 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 62/115 (53%), Positives = 79/115 (68%)

Query:    58 KSQVVGWPPVCSYRRKN-SFNE----KDRVESSK----MYVKVSMDGAPFLRKIDLGMHQ 108
             K+QVVGWPP+ SYR+   + N+    K+  E+ +    +YVKVSMDGAP+LRK+DL  ++
Sbjct:   114 KAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYK 173

Query:   109 GYPDLAMALEKLF-----GCFGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
              Y DL+ ALEK+F     G  GLSE+ KD    E+V  YEDKDGDWML GDVPWE
Sbjct:   174 NYKDLSTALEKMFIGFTTGKDGLSESRKDG---EYVLTYEDKDGDWMLVGDVPWE 225

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 273 (101.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 55/111 (49%), Positives = 76/111 (68%)

Query:    58 KSQVVGWPPVCSYRRKN-SFNE----KDRVESSK----MYVKVSMDGAPFLRKIDLGMHQ 108
             K+QVVGWPP+ SYR+   + N+    K+ V++ +    +YVKVSMDGAP+LRK+DL  ++
Sbjct:   121 KAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYK 180

Query:   109 GYPDLAMALEKLFGCFGLS-EALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
              Y D+++ LEK+F  F    E  ++    E+V  YEDKDGDWML GDVPWE
Sbjct:   181 NYKDMSLGLEKMFIGFSTGKEGAENQKDGEYVLTYEDKDGDWMLVGDVPWE 231

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q7Y1H8 IAA14 "Auxin-responsive protein IAA14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 225 (84.3 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
 Identities = 47/84 (55%), Positives = 60/84 (71%)

Query:    78 EKDRVESSK---MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDAD 134
             E D+   +K   +YVKVSMDGAP+LRK+DL M+ GY +L  AL+ LFGCF  ++A   A 
Sbjct:    97 ETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFS-ADA--SAS 153

Query:   135 SSEFVPIYEDKDGDWMLAGDVPWE 158
             ++ F   YEDKDGD MLAGDVPW+
Sbjct:   154 AAHFAVAYEDKDGDLMLAGDVPWD 177

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 72/169 (42%), Positives = 95/169 (56%)

Query:     1 MELEITELRLGLPG-RDGCDSGLXXXXXXXXXXXXRAFSDICDEA---NYETNGERKIN- 55
             ME + TELRLGLPG  +  +  +            R      +E+   +  TN E  +  
Sbjct:     1 MEFKATELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQTSEESVSISKVTNDEHIVES 60

Query:    56 -----PTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGY 110
                  P K+++VGWPP+ SYR KNS +E D      ++VKVSMDGAP+LRKIDL ++ GY
Sbjct:    61 SSAAPPAKAKIVGWPPIRSYR-KNSLHEAD---VGGIFVKVSMDGAPYLRKIDLRVYGGY 116

Query:   111 PDLAMALEKLFGC-FGLSEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
              +L  ALE +F    G     +    SE+ P YEDKDGDWML GDVPW+
Sbjct:   117 SELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWD 165

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P13088	AUX22_SOYBN	No assigned EC number	0.6875	0.9303	0.7538	yes	no
O24409	IAA19_ARATH	No assigned EC number	0.5581	0.9303	0.7461	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	6e-69

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  206 bits (526), Expect = 6e-69
 Identities = 84/172 (48%), Positives = 105/172 (61%), Gaps = 22/172 (12%)

Query: 1   MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSD------------ICDEANYET 48
           + L+ TELRLGLPG  G +     S+++     KR FS+                 +  +
Sbjct: 1   LNLKATELRLGLPG--GSEPESEPSTSS-VTSNKRGFSEVTEDGISSSLGEDKSTISVSS 57

Query: 49  NGERKINPTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQ 108
           NG+    P K+QVVGWPPV SYR KNS  EK     S  YVKVSMDGAP+LRK+DL M++
Sbjct: 58  NGDSAKPPAKAQVVGWPPVRSYR-KNSLREK----KSGSYVKVSMDGAPYLRKVDLKMYK 112

Query: 109 GYPDLAMALEKLFGCFGL--SEALKDADSSEFVPIYEDKDGDWMLAGDVPWE 158
            Y +L+ ALEK+F CF +  S  L   + SE+VP YEDKDGDWML GDVPWE
Sbjct: 113 SYDELSSALEKMFSCFTIGESGLLDLLNGSEYVPTYEDKDGDWMLVGDVPWE 164

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.5
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.38
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.32
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	97.08
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.06
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.67
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.35
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.35
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.05
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.02
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.69
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.87
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	94.61

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=8.1e-55  Score=355.55  Aligned_cols=156  Identities=46%  Similarity=0.815  Sum_probs=6.0

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCccccccccccccccccc-----------------c-c-------cCCCCCCC
Q 048172            1 MELEITELRLGLPGRDGCDSGLNSSSNNNKNEKKRAFSDICDEAN-----------------Y-E-------TNGERKIN   55 (158)
Q Consensus         1 l~l~~tELrLGLPG~~~~~~~~~~~~~~~~~~~Kr~~~~~~~~~~-----------------~-~-------~~~~~~~p   55 (158)
                      |||++|||||||||+.+++............++||+|+++.+...                 . .       .......|
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   80 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP   80 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence            799999999999998754311122233456788999999533110                 0 0       00112235


Q ss_pred             CCCCcccCCCCCccccccccccccccccCCcceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhccc--Ccc------
Q 048172           56 PTKSQVVGWPPVCSYRRKNSFNEKDRVESSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCF--GLS------  127 (158)
Q Consensus        56 ~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~--g~~------  127 (158)
                      .+++|+||||||++||+|.+...  .....++||||+|||+||||||||++|+||++|+.+|++||.++  +++      
T Consensus        81 ~~~~~~vgwpp~~s~r~n~~~~~--~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~  158 (215)
T PF02309_consen   81 ASKAQVVGWPPVRSFRKNSLSEK--QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN  158 (215)
T ss_dssp             -----BTTBS----S-----------------------------------------------------------------
T ss_pred             cccccccCCCccccccccccccc--ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence            57899999999999999987622  11234799999999999999999999999999999999999544  211      


Q ss_pred             --ccccCCCCCCcEEEEEeCCCCEEecccCCCC
Q 048172          128 --EALKDADSSEFVPIYEDKDGDWMLAGDVPWE  158 (158)
Q Consensus       128 --~~~~~~~~~~~~ltYeD~eGD~mLVGDvPW~  158 (158)
                        ...+..++++|+|||||+||||||||||||+
T Consensus       159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~  191 (215)
T PF02309_consen  159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWE  191 (215)
T ss_dssp             ---------------------------------
T ss_pred             chhhccccCCcceeEEEECCCCCEEEecCCCHH
Confidence              0111245679999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.50  E-value=0.00042  Score=47.74  Aligned_cols=56  Identities=30%  Similarity=0.490  Sum_probs=46.6

Q ss_pred             eeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172           88 YVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus        88 ~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      -|||+..|. +=|.+.+..--+|.+|...++..|++.+          ..+.+.|.|.||||..+-+
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~~----------~~~~l~Y~D~dgD~V~i~s   58 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLLD----------EDFQLKYKDEDGDLVTISS   58 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTST----------SSEEEEEEETTSSEEEESS
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCCC----------ccEEEEeeCCCCCEEEeCC
Confidence            479999997 4446888888899999999999999751          3699999999999988753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.38  E-value=0.0007  Score=48.68  Aligned_cols=54  Identities=26%  Similarity=0.361  Sum_probs=43.6

Q ss_pred             eeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           88 YVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        88 ~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      =|||...|.  -+.+-|..--+|++|...+.++|.+..         .+.|.|-|.|.||||.++
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~~---------~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLDD---------MSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCCC---------CCeeEEEEECCCCCeEEe
Confidence            389999887  445555556699999999999999641         147999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.32  E-value=0.00098  Score=48.87  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=45.2

Q ss_pred             eeEEEecCcccceeeeCC---CCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEecc
Q 048172           88 YVKVSMDGAPFLRKIDLG---MHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAG  153 (158)
Q Consensus        88 ~VKV~mdG~pigRkVDL~---~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVG  153 (158)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|.+..         ..+|++.|.|.||||..+-
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~---------~~~~~l~Y~Dedgd~V~l~   61 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSP---------DADLSLTYTDEDGDVVTLV   61 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCC---------CCcEEEEEECCCCCEEEEc
Confidence            389999998444455553   46799999999999998642         2479999999999998764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=97.08  E-value=0.0025  Score=46.30  Aligned_cols=52  Identities=13%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             eEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           89 VKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        89 VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      |||.-.|.-+--+++-+..-+|.+|...+.++|++.            .+.|.|-|.||||.++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------------~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------------DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------------cceeEEEcCCCCEEEE
Confidence            799999997777787777889999999999999975            3899999999999986

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>smart00666 PB1 PB1 domain

Probab=97.06  E-value=0.0033  Score=43.24  Aligned_cols=54  Identities=28%  Similarity=0.437  Sum_probs=44.4

Q ss_pred             eEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172           89 VKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus        89 VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      |||.-.|  --|.+-+..--+|.+|...+.+.|.+..          ..+.|.|+|.||||..+.+
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~~----------~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLDN----------QSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCCC----------CCeEEEEECCCCCEEEecC
Confidence            6887754  3677888889999999999999999642          3589999999999987653

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.67  E-value=0.011  Score=40.31  Aligned_cols=55  Identities=27%  Similarity=0.414  Sum_probs=43.8

Q ss_pred             eeEEEecCcccceeeeCC-CCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172           88 YVKVSMDGAPFLRKIDLG-MHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus        88 ~VKV~mdG~pigRkVDL~-~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      -|||+-.|.  -|.+=+. .--+|++|...|.+.|.+..          ..+.+.|.|.||||..+.+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~----------~~~~l~y~D~e~d~v~l~s   57 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA----------VSFKLKYPDEDGDLVTISS   57 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC----------CcEEEEeeCCCCCEEEeCC
Confidence            378888765  3445555 88899999999999999642          2589999999999988754

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.35  E-value=0.0088  Score=43.77  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             cccceeeeCC--CCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           96 APFLRKIDLG--MHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        96 ~pigRkVDL~--~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      +|-||.+=++  ...|+.+|..++.+-|+.....       ...|.|.|.|.||||.+.
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~-------~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFE-------THLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc-------CCcccEEEEcCCCCEEEE
Confidence            4567765554  4789999999999999875321       246999999999999986

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.35  E-value=0.011  Score=42.91  Aligned_cols=54  Identities=24%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             eEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           89 VKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        89 VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      ||...|..=-=-.+|.....+|++++.-|+.||.+..          ..|+|-|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~----------~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN----------VDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC----------CcEEEEEeCCCCCEecc
Confidence            6666666522224555667999999999999999763          36999999999998754

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.05  E-value=0.023  Score=41.34  Aligned_cols=57  Identities=23%  Similarity=0.424  Sum_probs=40.9

Q ss_pred             eEEEecCcccceeeeCCCC-CChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172           89 VKVSMDGAPFLRKIDLGMH-QGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus        89 VKV~mdG~pigRkVDL~~~-~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      +|+...|. | |.+=+..- -+|.+|...+.+.|...  .     +....+.+.|.|.|||+.-|-+
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~--~-----~~~~~flIKYkD~dGDlVTIts   60 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK--L-----GSSDDVLIKYKDEDGDLITIFD   60 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc--c-----CCcccEEEEEECCCCCEEEecc
Confidence            67776665 4 44444432 39999999999999943  1     1134799999999999986643

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.02  E-value=0.022  Score=41.69  Aligned_cols=53  Identities=19%  Similarity=0.304  Sum_probs=42.8

Q ss_pred             eEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           89 VKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        89 VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      ||++-.|.-+--.+|.  .-+|++|.+.+..||.+.         ....|++.|.|.|||---+
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~---------~~q~ft~kw~DEEGDp~ti   55 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH---------NDQPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC---------CCCcEEEEEECCCCCceee
Confidence            7999999865556665  778999999999999964         1236999999999997543

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.69  E-value=0.047  Score=39.91  Aligned_cols=53  Identities=26%  Similarity=0.279  Sum_probs=44.3

Q ss_pred             eEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEecc
Q 048172           89 VKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAG  153 (158)
Q Consensus        89 VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVG  153 (158)
                      -||+-.|.  .|++....-=+|..|...|+.+|.+...          .+.|+|.|.|||..-+-
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~~----------~~~vtYiDeD~D~ITls   55 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPEI----------KVGVTYIDNDNDEITLS   55 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCChh----------HeEEEEEcCCCCEEEec
Confidence            48888885  7999888889999999999999997621          28999999999987543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.87  E-value=0.15  Score=37.41  Aligned_cols=56  Identities=20%  Similarity=0.387  Sum_probs=41.0

Q ss_pred             eeEEEecC---cccceeeeC--CCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           88 YVKVSMDG---APFLRKIDL--GMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        88 ~VKV~mdG---~pigRkVDL--~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      .||.+..|   .+==|++-|  ....+|++|...+.++|..-         .+..|++.|.|.|||..-+
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l---------~~~~ftlky~DeeGDlvtI   62 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL---------RGKNFQLFWKDEEGDLVAF   62 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc---------CCCcEEEEEECCCCCEEee
Confidence            57777766   223344444  66679999999999999732         1247999999999998754

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=94.61  E-value=0.14  Score=37.49  Aligned_cols=54  Identities=28%  Similarity=0.437  Sum_probs=45.1

Q ss_pred             ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172           87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus        87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      .-|||+-.|.  .|-|-+..--+|++|...+.++|++.           ..++|-|.|. ||..-+++
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~-----------~~~~iKykDE-GD~iti~s   56 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK-----------RRLKIKMKDD-GDMITMGD   56 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC-----------CceEEEEEcC-CCCccccC
Confidence            4589999888  66777777778999999999999974           2589999999 99887765

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.67
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.62
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.1
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.42
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	92.38
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	89.47
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	88.84
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	87.56
1pqs_A	77	Cell division control protein 24; alpha and beta p	86.49

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.67  E-value=0.0037  Score=44.83  Aligned_cols=56  Identities=14%  Similarity=0.164  Sum_probs=43.4

Q ss_pred             cceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           86 KMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        86 ~~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      ..=|||+-.|.-+  .+.+..--+|++|...|.++|.+.-         +..+++.|.|.|||+.-+
T Consensus         6 ~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~---------~~~f~lky~DEeGD~iti   61 (89)
T 1vd2_A            6 QVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN---------EQLFTMKWIDEEGDPCTV   61 (89)
T ss_dssp             CEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS---------SCCEEEEECCSSSCCEEC
T ss_pred             eEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC---------CCeEEEEEECCCCCcccc
Confidence            3568889999844  4444446699999999999999641         236999999999998654

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.62  E-value=0.0055  Score=43.91  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      .-||...+..--=-.||-..-.+|++|...|+++|.+..          ..|++.|.|.|||++-+
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~----------~~f~i~Y~D~dGDLlpI   62 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG----------LDVLLGYTDAHGDLLPL   62 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT----------CCCEEEEECTTSCEEEC
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC----------CCEEEEEECCCCCEeee
Confidence            457878877743335666677899999999999999542          36999999999999754

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.10  E-value=0.042  Score=40.21  Aligned_cols=59  Identities=19%  Similarity=0.275  Sum_probs=42.3

Q ss_pred             cceeEEEecCc----ccceeeeCCC-----------CCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEE
Q 048172           86 KMYVKVSMDGA----PFLRKIDLGM-----------HQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWM  150 (158)
Q Consensus        86 ~~~VKV~mdG~----pigRkVDL~~-----------~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~m  150 (158)
                      +.-||++..|.    .==|++-|..           -.+|++|...++++|..-         .+..|.+.|.|.|||+.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l---------~~~~f~l~Y~DedGDlI   75 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL---------RPGGFQAHYRAERGDLV   75 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---------CSSCEEEEEECTTCCEE
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc---------CCCcEEEEEECCCCCEE
Confidence            45688888752    2345555532           248999999999999732         12369999999999987


Q ss_pred             ecc
Q 048172          151 LAG  153 (158)
Q Consensus       151 LVG  153 (158)
                      -+-
T Consensus        76 tiS   78 (102)
T 2kkc_A           76 AFS   78 (102)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            553

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.42  E-value=0.084  Score=39.63  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=42.2

Q ss_pred             CcceeEEEecCc----ccceeeeCC-----------CCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCE
Q 048172           85 SKMYVKVSMDGA----PFLRKIDLG-----------MHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDW  149 (158)
Q Consensus        85 ~~~~VKV~mdG~----pigRkVDL~-----------~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~  149 (158)
                      .+.-||++..|.    .==|++-|.           .-.+|++|...+.++|..-         .+..|.+.|.|.|||+
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L---------~~~~f~l~YkDEdGDl   89 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL---------RPGGFQAHYRAERGDL   89 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS---------CSSCEEEEEECTTCCE
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc---------CCCcEEEEEECCCCCE
Confidence            457899998751    223555554           1359999999999999621         1236999999999998


Q ss_pred             Eec
Q 048172          150 MLA  152 (158)
Q Consensus       150 mLV  152 (158)
                      .-+
T Consensus        90 ItI   92 (117)
T 2ktr_A           90 VAF   92 (117)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=92.38  E-value=0.32  Score=35.43  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=46.1

Q ss_pred             cceeEEEecCc------ccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172           86 KMYVKVSMDGA------PFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus        86 ~~~VKV~mdG~------pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      +.-|||+-+..      .=.|.|=+..--+|++|...+.+-|.+.. ..   .. .....+-|+|.|||+...++
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~---~i-~~~~klkYkDEdGD~Vtl~s   74 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NN---NI-SPITKIKYQDEDGDFVVLGS   74 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SS---CC-CCCCCEEEECSSSCEEEECS
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cc---cc-cceeEEEEEcCCCCEEEEcC
Confidence            35678887742      12366667788899999999999999641 00   00 13579999999999988775

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=89.47  E-value=1  Score=32.15  Aligned_cols=54  Identities=9%  Similarity=0.072  Sum_probs=41.9

Q ss_pred             ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      .-+||.--|...=--|.-..--++++|-..+..+|++.            .++|.|.|.|||-.-|
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~------------~~~ikY~DEenD~v~i   60 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN------------TIQIKYLDEENEEVSI   60 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS------------SEEEEEECTTSCEEEE
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC------------ceEEEEEcCCCCEEEE
Confidence            35789999985444454444788999999999999964            4799999999997644

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=88.84  E-value=1.1  Score=32.89  Aligned_cols=54  Identities=9%  Similarity=0.072  Sum_probs=42.9

Q ss_pred             ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      .-+||..-|...=--|.-..--.+++|-..+..+|++.            .++|.|.|.|||-.-|
T Consensus        15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~------------~~~IkY~DEenD~V~i   68 (101)
T 1wj6_A           15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN------------TIQIKYLDEENEEVSI   68 (101)
T ss_dssp             EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS------------SBCCEEECTTSCEECC
T ss_pred             EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC------------ceEEEEecCCCCEEEE
Confidence            46799999985544565555788999999999999964            4799999999997643

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=87.56  E-value=0.93  Score=33.59  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=32.6

Q ss_pred             eCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172          103 DLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus       103 DL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      ||+..-.|.+|+.-+.+-|.-+            +-+|-|.|.|||+.-+
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~------------DIaLNYrD~eGDLIri   65 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE------------DIALNYRDAEGDLVRL   65 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS------------SEEEEEECTTSCEEEC
T ss_pred             ccccCCCHHHHHHHHHHHhccc------------ceeeeeecCCCCEEEE
Confidence            6788889999999999999832            5799999999999754

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=86.49  E-value=0.74  Score=31.88  Aligned_cols=48  Identities=23%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             eeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEeccc
Q 048172          102 IDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAGD  154 (158)
Q Consensus       102 VDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVGD  154 (158)
                      |=...--+|++|...+.+-|...  .+   +.......+-|+|.|||+...++
T Consensus         6 i~V~~~i~f~~L~~kI~~kl~~~--~~---~~~~~~~~lkYkDEdGD~Vti~s   53 (77)
T 1pqs_A            6 LLVEKVWNFDDLIMAINSKISNT--HN---NNISPITKIKYQDEDGDFVVLGS   53 (77)
T ss_dssp             EECTTCCCSHHHHHHHHHHTTTT--TS---SCSCSTTCCEEEETTTEEEECCS
T ss_pred             EEeCCCCCHHHHHHHHHHHHccc--cc---ccccceeEEEEEcCCCCEEEEcC
Confidence            33445568999999999999853  10   00124689999999999987765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.34
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.39
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	91.47
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	81.83
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	80.99

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00022  Score=49.39  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=47.1

Q ss_pred             ceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEecc
Q 048172           87 MYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAG  153 (158)
Q Consensus        87 ~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVG  153 (158)
                      .=|||+..|..+=-+|-+..-.+|.+|...|.+.|++.            .+.|.|.|.|+||.++.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~------------~~~lkY~Ddd~e~v~l~   59 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN------------TIQIKYLDEENEEVSIN   59 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS------------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc------------cceEEEEcCCCCEEEEe
Confidence            45899999986666777778899999999999999963            37899999999999875

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.0022  Score=43.32  Aligned_cols=56  Identities=14%  Similarity=0.033  Sum_probs=43.9

Q ss_pred             CCcceeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEecc
Q 048172           84 SSKMYVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLAG  153 (158)
Q Consensus        84 ~~~~~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLVG  153 (158)
                      .+..-|||+..+.-+  .+-|..=-+|.+|..++.+.|.+.            .++|-|.|.||||..+-
T Consensus        10 ~~~ikVKv~~~~D~~--~~~l~~~it~~dL~~kI~~rf~~~------------~~~lkY~Dedgd~v~i~   65 (85)
T d1ip9a_          10 LKTTKIKFYYKDDIF--ALMLKGDTTYKELRSKIAPRIDTD------------NFKLQTKLFDGSGEEIK   65 (85)
T ss_dssp             CCCEEEEECBTTCCE--EEEECSCCCHHHHHHHHHHHHTSS------------CEEEEECCSSSCCSCCC
T ss_pred             CCCEEEEEEECCcEE--EEEeCCCCCHHHHHHHHHHHhCCC------------ceEEEEEcCCCCEEEEe
Confidence            345678999988844  444455678999999999999742            48999999999997653

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.3  Score=33.01  Aligned_cols=53  Identities=23%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             eEEEecCcccce-eeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172           89 VKVSMDGAPFLR-KIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus        89 VKV~mdG~pigR-kVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      ||=.. |+.+=| .+|.....+|++.+.-|++|-.+..          -++.|.|.|..||.+-+
T Consensus         5 VKSKF-dAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~~----------~~f~i~Y~D~hgDLLPI   58 (82)
T d1wmhb_           5 VKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPG----------LDVLLGYTDAHGDLLPL   58 (82)
T ss_dssp             EEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT----------CCCEEEEECTTSCEEEC
T ss_pred             eeccc-CceEEEeeeccccccCHHHHHHHHHHHcCCCC----------CcEEEEEecCCCCcccc
Confidence            44333 333433 6788888999999999999988752          37999999999999854

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.83  E-value=1.2  Score=31.21  Aligned_cols=40  Identities=23%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             eeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCEEec
Q 048172          101 KIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDWMLA  152 (158)
Q Consensus       101 kVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~mLV  152 (158)
                      -=||+.--+|.+|..-+.+-|...            +-+|-|.|.|||..-+
T Consensus        24 eedl~~~P~ykdLl~lmr~~f~~~------------dIaLNYrD~eGDLIRl   63 (105)
T d1oeyj_          24 EEDLSSTPLLKDLLELTRREFQRE------------DIALNYRDAEGDLVRL   63 (105)
T ss_dssp             CSCTTCCCCHHHHHHHHHHHHCCS------------SEEEEEECTTSCEEEC
T ss_pred             ccccccCccHHHHHHHHHHHhccc------------eeEeeeecCCCCEEEE
Confidence            347889999999999999999843            5699999999998754

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.99  E-value=2.4  Score=28.40  Aligned_cols=51  Identities=16%  Similarity=0.230  Sum_probs=41.6

Q ss_pred             eeEEEecCcccceeeeCCCCCChHHHHHHHHHHhcccCccccccCCCCCCcEEEEEeCCCCE
Q 048172           88 YVKVSMDGAPFLRKIDLGMHQGYPDLAMALEKLFGCFGLSEALKDADSSEFVPIYEDKDGDW  149 (158)
Q Consensus        88 ~VKV~mdG~pigRkVDL~~~~~Y~eL~~~L~~MF~~~g~~~~~~~~~~~~~~ltYeD~eGD~  149 (158)
                      -||+.-.|..+--.+|..  -.|++|...+..|..+..         ..-|++-..|.|||=
T Consensus         3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~f~~---------~q~fT~KWiDeEGDP   53 (83)
T d1wmha_           3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSFDN---------EQLFTMKWIDEEGDP   53 (83)
T ss_dssp             EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTTCCT---------TCCCEEEEECTTSCE
T ss_pred             EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhCCCc---------CCcEEEEEEcCCCCc
Confidence            478999999887777765  589999999999998752         125899999999994