Citrus Sinensis ID: 048194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccEEEEEccccccEEEccccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHHcccccccEEEEEccEEcccccccccccccccEEEccccccEEcccccHHHHHccccccccccccccccccccccEEEccccccEEEcccHHHcccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHcccccccEEEcccccccccccccccccccEEcccccccEEccccccccccEEEccccEEEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccccccHHHHHcccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEEcccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHEEHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHHccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHccccHHHHHHHcccccccccccccccccEEEEEccccccccccHHHcccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccHcccccHHHHcccccccEEEccccccccccHHHccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccc
Coil and Loop (DISEMBL)
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKssltfdpsssvklmqwrqstdccdwsgvdcdeaghvigldlstesisgGIENAAILFSLHYLRSLNLartsfngtqissKLANIssltylnlsdagfagqipVQISRMARLVALDfsfnqfsgsisSIRWEHLLNLVCAVlsdnsldgsiprsmfefpMLQQLQLANnqfggsiprfsnasssaLDTQIKRVYSClglrtqkltplllssnnlngtvQLDKILslgnlakldlsynslavdessrnysfspMLELLNLAScklreipnlknqsQLQYLYLSENqisreipnwIWRVSVVGLHclnlshnflvgfqapysipalRFIDLISNQLrgnihqlpnnpiyidfsnnnftssipadtvngtlpdtfprncllqtldlngnrpqgtvpksiAKCKMLEVLnlgnnqfsdkfpcslydapitikGLDIKLQKILNIFTSidfstnnfkgpileDVGLLKSLyglnlshnaltgsipssfgnlkrlesLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ
Flexible Loop (DISEMBL)
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ
Low Complexity Region (SEG)
MSSLGYFFAINIAFVSGqcqsdqqtlllqlksslTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPlllssnnlnGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQlaslyflsylnlsynqlEGRFQ
Disordered region (IsUnstruct)
***LGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSI*********ALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ******
Disordered Region (DISOPRED)
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTF**********WRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT***RV***LGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR**
Disordered Region (DISEMBL)
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ
Disordered Region (DISPRO)
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTF**SSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	558	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.939	0.618	0.280	2e-45
O82318	960	Probably inactive leucine	no	no	0.901	0.523	0.304	3e-40
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.931	0.472	0.285	7e-39
Q42371	976	LRR receptor-like serine/	no	no	0.854	0.488	0.290	5e-38
O65440	992	Leucine-rich repeat recep	no	no	0.844	0.474	0.286	9e-38
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.865	0.430	0.302	1e-37
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.965	0.739	0.291	4e-37
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.874	0.390	0.313	9e-37
Q9FL28	1173	LRR receptor-like serine/	no	no	0.756	0.359	0.318	2e-36
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.851	0.398	0.293	2e-36

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 203/724 (28%), Positives = 295/724 (40%), Gaps = 200/724 (27%)

Query: 19  CQSDQQTLLLQLKSSLTFDPSSSVKLMQWR----QSTDCCDWSGVDC-DEAGHVIGLDLS 73
           C+ DQ+  LL+ +     + S  + + QWR    +STDCC W+GV C D++G VI LD+ 
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHI-MNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIP 92

Query: 74  TESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP 133
              ++  ++  + LF L YLR L+L   +  G +I S L N+S LT +NL    F G+IP
Sbjct: 93  NTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLYFNKFVGEIP 151

Query: 134 VQISRM------------------------ARLVALDFSFNQFSGSISSIRWEHLLNLVC 169
             I  +                        +RLV L+   N+  G I     + L  L  
Sbjct: 152 ASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGD-LKQLRN 210

Query: 170 AVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP---------RFSNASSSALDTQI 220
             L+ N+L G IP S+     L  L L +NQ  G +P         R  +  +++L   I
Sbjct: 211 LSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI 270

Query: 221 KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLA---------- 270
              ++ L     KL+  +LSSNN   T   D  +   NL   D+SYNS +          
Sbjct: 271 PISFANL----TKLSIFVLSSNNFTSTFPFDMSI-FHNLEYFDVSYNSFSGPFPKSLLLI 325

Query: 271 -------------------VDESS----------RNYSFSPMLE----LLNLASCKLRE- 296
                               + SS          RN    P+ E    LLNL    +   
Sbjct: 326 PSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHN 385

Query: 297 ------IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
                  P +     L +L LS+N +  E+P  +WR     L+ + LSHN    F+    
Sbjct: 386 NFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWR-----LNTMVLSHNSFSSFENTSQ 440

Query: 351 IPAL-RFIDLISNQLRGNIHQLP---NNPIYIDFSNNNFTSSIPA--------------- 391
             AL   +DL SN  +G I  +    ++  ++D SNN F+ SIP+               
Sbjct: 441 EEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLG 500

Query: 392 -DTVNGTLPD--------------------TFPR---NC-LLQTLDLNGNRPQGTVPKSI 426
            +  +GTLPD                     FP+   NC  L+ +++  N+ +   P  +
Sbjct: 501 DNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL 560

Query: 427 AKCKMLEVLNL--------------------------GNNQFSDKFP------------- 447
                L VLNL                           +N FS   P             
Sbjct: 561 ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTL 620

Query: 448 ----------------CSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL 491
                              ++  +  KG+D+  ++I   F +IDFS N   G I E +G 
Sbjct: 621 TEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGY 680

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           LK L  LNLS NA T  IP    NL +LE+LD+S N LS  IP  LA+L FLSY+N S+N
Sbjct: 681 LKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHN 740

Query: 552 QLEG 555
            L+G
Sbjct: 741 LLQG 744

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  167 bits (422), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 265/607 (43%), Gaps = 104/607 (17%)

Query: 14  FVSGQC-QSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDL 72
           F++  C  +++  LLL  KSS+  DP   +    +  + D C WSGV C+    V+ LDL
Sbjct: 21  FLNFSCLHANELELLLSFKSSIQ-DPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDL 79

Query: 73  STESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANIS-SLTYLNLSDAGFAGQ 131
           S +++SG I  AA  F L +L+++NL+  + +G          S SL YLNLS+  F+G 
Sbjct: 80  SGKNMSGQILTAAT-FRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGS 138

Query: 132 IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML 191
           IP     +  L  LD S N F+G I +       NL    L  N L G +P  +     L
Sbjct: 139 IPRGF--LPNLYTLDLSNNMFTGEIYN-DIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRL 195

Query: 192 QQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLD 251
           + L LA+NQ  G +P                    LG + + L  + L  NNL+G +   
Sbjct: 196 EFLTLASNQLTGGVP------------------VELG-KMKNLKWIYLGYNNLSGEIPY- 235

Query: 252 KILSLGNLAKLDLSYNSLA--VDESSRNYSFSPMLELLNLASCKL--REIPNLKNQSQLQ 307
           +I  L +L  LDL YN+L+  +  S  +      LE + L   KL  +  P++ +   L 
Sbjct: 236 QIGGLSSLNHLDLVYNNLSGPIPPSLGDLK---KLEYMFLYQNKLSGQIPPSIFSLQNLI 292

Query: 308 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFIDLISNQLR 365
            L  S+N +S EIP  + ++    L  L+L  N L G   +   S+P L+ + L SN+  
Sbjct: 293 SLDFSDNSLSGEIPELVAQMQ--SLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFS 350

Query: 366 GNIHQ---LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTV 422
           G I       NN   +D S NN T         G LPDT   +  L  L L  N     +
Sbjct: 351 GGIPANLGKHNNLTVLDLSTNNLT---------GKLPDTLCDSGHLTKLILFSNSLDSQI 401

Query: 423 PKSIAKCKMLEVLNLGNNQFSDKFP----------------------CSLYDAP------ 454
           P S+  C+ LE + L NN FS K P                       + +D P      
Sbjct: 402 PPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLD 461

Query: 455 ----------------ITIKGLDIKLQKILNI----------FTSIDFSTNNFKGPILED 488
                             +K LD+   KI  +             +D S N   G I  +
Sbjct: 462 LSVNKFFGELPDFSRSKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRE 521

Query: 489 VGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNL 548
           +   K+L  L+LSHN  TG IPSSF   + L  LDLS N LS  IP  L ++  L  +N+
Sbjct: 522 LSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNI 581

Query: 549 SYNQLEG 555
           S+N L G
Sbjct: 582 SHNLLHG 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  162 bits (409), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 175/612 (28%), Positives = 282/612 (46%), Gaps = 92/612 (15%)

Query: 7   FFAINI----AFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQ-STDCCDWSGVDC 61
           F AI I    +F+  +  +++  +LL+ K+ L     S+  L  W Q  ++ C+W+G+ C
Sbjct: 7   FLAIVILCSFSFILVRSLNEEGRVLLEFKAFLN---DSNGYLASWNQLDSNPCNWTGIAC 63

Query: 62  DEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYL 121
                V  +DL+  ++SG +  + ++  LH LR LN++ T+F    I   L+   SL  L
Sbjct: 64  THLRTVTSVDLNGMNLSGTL--SPLICKLHGLRKLNVS-TNFISGPIPQDLSLCRSLEVL 120

Query: 122 NLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSI 181
           +L    F G IP+Q++ +  L  L    N   GSI   +  +L +L   V+  N+L G I
Sbjct: 121 DLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPR-QIGNLSSLQELVIYSNNLTGVI 179

Query: 182 PRSMFEFPMLQQLQLANNQFGGSIPR-------------FSNASSSALDTQIKRVYSCLG 228
           P SM +   L+ ++   N F G IP                N    +L  Q++++     
Sbjct: 180 PPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKL----- 234

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES------SRNYSFSP 282
              Q LT L+L  N L+G +      S+GN+++L++    LA+ E+       R      
Sbjct: 235 ---QNLTDLILWQNRLSGEIPP----SVGNISRLEV----LALHENYFTGSIPREIGKLT 283

Query: 283 MLELLNLASCKL-----REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 337
            ++ L L + +L     REI NL + +++ +   SENQ++  IP     +  + L  L+L
Sbjct: 284 KMKRLYLYTNQLTGEIPREIGNLIDAAEIDF---SENQLTGFIPKEFGHI--LNLKLLHL 338

Query: 338 SHNFLVGFQAPYSIPALRFI---DLISNQLRGNIHQ-LPNNPIYIDFS--NNNFTSSIP- 390
             N L+G   P  +  L  +   DL  N+L G I Q L   P  +D    +N     IP 
Sbjct: 339 FENILLG-PIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPP 397

Query: 391 --------------ADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436
                         A++++G +P  F R   L  L L  N+  G +P+ +  CK L  L 
Sbjct: 398 LIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLM 457

Query: 437 LGNNQFSDKFPCSLYDAPITIKGLDIK-----------LQKILNIFTSIDFSTNNFKGPI 485
           LG+NQ +   P  L++    +  L++            L K+ N+   +  + NNF G I
Sbjct: 458 LGDNQLTGSLPIELFNLQ-NLTALELHQNWLSGNISADLGKLKNL-ERLRLANNNFTGEI 515

Query: 486 LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY 545
             ++G L  + G N+S N LTG IP   G+   ++ LDLS N  S  I  +L  L +L  
Sbjct: 516 PPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEI 575

Query: 546 LNLSYNQLEGRF 557
           L LS N+L G  
Sbjct: 576 LRLSDNRLTGEI 587

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 168/579 (29%), Positives = 262/579 (45%), Gaps = 102/579 (17%)

Query: 4   LGYFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQS--TDCCDWSGVDC 61
           LG+ F +++        S++   LL++K S  F   ++V L  W  S  +D C W GV C
Sbjct: 10  LGFLFCLSLV---ATVTSEEGATLLEIKKS--FKDVNNV-LYDWTTSPSSDYCVWRGVSC 63

Query: 62  DEAG-HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTY 120
           +    +V+ L+LS  ++ G                           +IS  + ++ SL  
Sbjct: 64  ENVTFNVVALNLSDLNLDG---------------------------EISPAIGDLKSLLS 96

Query: 121 LNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS 180
           ++L     +GQIP +I   + L  LD SFN+ SG I       L  L   +L +N L G 
Sbjct: 97  IDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIP-FSISKLKQLEQLILKNNQLIGP 155

Query: 181 IPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLS 240
           IP ++ + P L+ L LA N+  G IPR               V   LGLR          
Sbjct: 156 IPSTLSQIPNLKILDLAQNKLSGEIPRL---------IYWNEVLQYLGLR---------- 196

Query: 241 SNNLNGTVQLDKILSLGNLAKLDLSYNSL--AVDESSRNYSFSPMLELLNLASCKLR-EI 297
            NNL G +  D +  L  L   D+  NSL  ++ E+  N +     ++L+L+  +L  EI
Sbjct: 197 GNNLVGNISPD-LCQLTGLWYFDVRNNSLTGSIPETIGNCT---AFQVLDLSYNQLTGEI 252

Query: 298 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFI 357
           P      Q+  L L  NQ+S +IP+ I  +  + +  L+LS N L G   P  +  L F 
Sbjct: 253 PFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAV--LDLSGNLLSGSIPPI-LGNLTFT 309

Query: 358 D---LISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPAD---------------TVNG 396
           +   L SN+L G+I     N     Y++ ++N+ T  IP +                + G
Sbjct: 310 EKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEG 369

Query: 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT 456
            +PD       L +L+++GN+  GT+P++  K + +  LNL +N      P         
Sbjct: 370 PIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIP--------- 420

Query: 457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL 516
                ++L +I N+ T +D S N   G I   +G L+ L  +NLS N +TG +P  FGNL
Sbjct: 421 -----VELSRIGNLDT-LDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNL 474

Query: 517 KRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           + +  +DLS N++S  IP +L  L  +  L L  N L G
Sbjct: 475 RSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTG 513

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  158 bits (400), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 167/583 (28%), Positives = 260/583 (44%), Gaps = 112/583 (19%)

Query: 23  QQTLLLQLKSSL-TFDPSSSVKLMQWR--QSTDCCDWSGVDCDEAGHVIG-LDLSTESIS 78
           Q  +L+ LK S  ++DPS    L  W        C W+GV CD     I  LDLS  +IS
Sbjct: 34  QANVLISLKQSFDSYDPS----LDSWNIPNFNSLCSWTGVSCDNLNQSITRLDLSNLNIS 89

Query: 79  GGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISR 138
           G I             S  ++R S              SL +L++S   F+G++P +I  
Sbjct: 90  GTI-------------SPEISRLS-------------PSLVFLDISSNSFSGELPKEIYE 123

Query: 139 MARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLAN 198
           ++ L  L+ S N F G + +  +  +  LV     DNS +GS+P S+     L+ L L  
Sbjct: 124 LSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGG 183

Query: 199 NQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGN 258
           N F G IPR   +  S L  +                 L LS N+L G +  +++ ++  
Sbjct: 184 NYFDGEIPR---SYGSFLSLKF----------------LSLSGNDLRGRIP-NELANITT 223

Query: 259 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-----EIPNLKNQSQLQYLYLSE 313
           L +L L Y +        ++     L  L+LA+C L+     E+ NLKN   L+ L+L  
Sbjct: 224 LVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKN---LEVLFLQT 280

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALR---FIDLISNQLRGNI-- 368
           N+++  +P  +  ++   L  L+LS+NFL G + P  +  L+     +L  N+L G I  
Sbjct: 281 NELTGSVPRELGNMT--SLKTLDLSNNFLEG-EIPLELSGLQKLQLFNLFFNRLHGEIPE 337

Query: 369 --HQLPNNPIYIDFSNNNFTSSIPA---------------DTVNGTLPDTFPRNCLLQTL 411
              +LP+  I +   +NNFT  IP+               + + G +P++      L+ L
Sbjct: 338 FVSELPDLQI-LKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFGRRLKIL 396

Query: 412 DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471
            L  N   G +P+ + +C+ L    LG N  + K P  L   P      ++ L ++ N F
Sbjct: 397 ILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLP------NLSLLELQNNF 450

Query: 472 ------------------TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513
                             T I+ S N   GPI   +  L+SL  L L  N L+G IP   
Sbjct: 451 LTGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEI 510

Query: 514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
           G+LK L  +D+S NN S   P +      L+YL+LS+NQ+ G+
Sbjct: 511 GSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQ 553

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 166/548 (30%), Positives = 258/548 (47%), Gaps = 65/548 (11%)

Query: 54  CDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLA 113
           C+W G+ CD++ +V  L+ +   +SG +     +  L  L+ L+L+  +F+GT I S L 
Sbjct: 64  CNWFGITCDDSKNVASLNFTRSRVSGQL--GPEIGELKSLQILDLSTNNFSGT-IPSTLG 120

Query: 114 NISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS 173
           N + L  L+LS+ GF+ +IP  +  + RL  L    N  +G +    +  +  L    L 
Sbjct: 121 NCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLF-RIPKLQVLYLD 179

Query: 174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLG----- 228
            N+L G IP+S+ +   L +L +  NQF G+IP  S  +SS+L          +G     
Sbjct: 180 YNNLTGPIPQSIGDAKELVELSMYANQFSGNIPE-SIGNSSSLQILYLHRNKLVGSLPES 238

Query: 229 -LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL--AVDESSRNYSFSPMLE 285
                 LT L + +N+L G V+     +  NL  LDLSYN     V  +  N S    L 
Sbjct: 239 LNLLGNLTTLFVGNNSLQGPVRFGSP-NCKNLLTLDLSYNEFEGGVPPALGNCSSLDALV 297

Query: 286 LL--NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
           ++  NL+      +  LKN   L  L LSEN++S  IP  +   S   L+ L L+ N LV
Sbjct: 298 IVSGNLSGTIPSSLGMLKN---LTILNLSENRLSGSIPAELGNCS--SLNLLKLNDNQLV 352

Query: 344 GFQAPYSIPALRFID---LISNQLRGNIHQLPNNPIYIDFSN---------NNFTSSIPA 391
           G   P ++  LR ++   L  N+  G I      PI I  S          NN T  +P 
Sbjct: 353 G-GIPSALGKLRKLESLELFENRFSGEI------PIEIWKSQSLTQLLVYQNNLTGELPV 405

Query: 392 DTVN---------------GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436
           +                  G +P     N  L+ +D  GN+  G +P ++   + L +LN
Sbjct: 406 EMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILN 465

Query: 437 LGNNQFSDKFPCSLYDAPITIKGLDIK---LQKILNIFTS------IDFSTNNFKGPILE 487
           LG+N      P S+     TI+   ++   L  +L  F+       +DF++NNF+GPI  
Sbjct: 466 LGSNLLHGTIPASIGHCK-TIRRFILRENNLSGLLPEFSQDHSLSFLDFNSNNFEGPIPG 524

Query: 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLN 547
            +G  K+L  +NLS N  TG IP   GNL+ L  ++LS N L  ++P+QL++   L   +
Sbjct: 525 SLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFD 584

Query: 548 LSYNQLEG 555
           + +N L G
Sbjct: 585 VGFNSLNG 592

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  156 bits (395), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 284/659 (43%), Gaps = 120/659 (18%)

Query: 1   MSSLGYFFAINIAFVSGQCQSDQQTLL-LQLKSSLTF---DPSSSVKLMQWRQSTDCCDW 56
           +SS  + F + I F+S    +  + +  LQ + SL +   + SSSV  + W  S DCC W
Sbjct: 20  LSSHMHLFLLCILFLSALFLTLSEAVCNLQDRESLIWFSGNVSSSVSPLNWNLSIDCCSW 79

Query: 57  SGVDCDEAG--HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLAN 114
            G+ CD++   HV  + L +  +SG +  A+ + ++H L  L+L+    +G       + 
Sbjct: 80  EGITCDDSSDSHVTVISLPSRGLSGTL--ASSVQNIHRLSRLDLSYNRLSGPLPPGFFST 137

Query: 115 ISSLTYLNLSDAGFAGQIPVQIS------RMARLVALDFSFNQFSGSI--SSIRWEHLLN 166
           +  L  LNLS   F G++P++ +      R   +  LD S N   G I  SS+  +  +N
Sbjct: 138 LDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQTLDLSSNLLEGEILRSSVYLQGTIN 197

Query: 167 LVCAVLSDNSLDGSIPRSMFEF-PMLQQLQLANNQFGGSIPR--------------FSNA 211
           L+   +S+NS  G IP  M    P L +L  + N F G I +              F+N 
Sbjct: 198 LISFNVSNNSFTGPIPSFMCRSSPQLSKLDFSYNDFSGHISQELGRCLRLTVLQAGFNNL 257

Query: 212 SSSALDTQIKRVYSCLGL----------------RTQKLTPLLLSSNNLNGTVQLD---- 251
           S   + ++I  +     L                R +KLT L L SN+L G + +D    
Sbjct: 258 SG-VIPSEIYNLSELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNL 316

Query: 252 ----------------KILSLGN---LAKLDLSYNSLAVDESSRNYSFSPMLELLNLA-- 290
                             LSL N   L KL+L  N L    +   +S    L++L+L   
Sbjct: 317 SSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNN 376

Query: 291 -----------SCK----LR--------EI-PNLKNQSQLQYLYLSENQISREIPNWIWR 326
                      SCK    +R        EI P +     L ++ LS+N+++         
Sbjct: 377 SFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITGALSIL 436

Query: 327 VSVVGLHCLNLSHNFL-------VGFQAPYSIPALRFIDLISNQLRGNIHQLP---NNPI 376
                L  L L+ NF          F +P   P LR   + + +LRG I       N   
Sbjct: 437 QGCRKLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVE 496

Query: 377 YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436
            +D S N F  SIP     GTLPD F        LDL+ N   G +PK + + + L    
Sbjct: 497 VMDLSMNRFVGSIPGWL--GTLPDLF-------YLDLSDNLLTGELPKELFQLRALMSQK 547

Query: 437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY 496
           +  N + +  P  L    +T    + +  K+ +   +I    NN  G I  +VG LK L+
Sbjct: 548 ITENNYLE-LPIFLNPNNVTT---NQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLH 603

Query: 497 GLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            L L  N L+GSIP    NL  LE LDLS NNLS +IP  L +L FLSY N++ N LEG
Sbjct: 604 ILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEG 662

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  155 bits (392), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 181/577 (31%), Positives = 257/577 (44%), Gaps = 89/577 (15%)

Query: 17  GQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWR-QSTDCCDWSGVDCDEAG--HVIGLDLS 73
           G   +D QTLL ++K SL  +P     L QW   + + C W+GV CD  G   VI L+L+
Sbjct: 21  GIINNDLQTLL-EVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLT 79

Query: 74  TESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP 133
              ++G I  +        L  L+L+  +  G  I + L+N++SL  L L      G+IP
Sbjct: 80  GLGLTGSI--SPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLESLFLFSNQLTGEIP 136

Query: 134 VQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQ 193
            Q+  +  + +L    N+  G I      +L+NL    L+   L G IP  +     +Q 
Sbjct: 137 SQLGSLVNIRSLRIGDNELVGDIPET-LGNLVNLQMLALASCRLTGPIPSQLGRLVRVQS 195

Query: 194 LQLANNQFGGSIP-RFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK 252
           L L +N   G IP    N S                     LT    + N LNGT+  + 
Sbjct: 196 LILQDNYLEGPIPAELGNCSD--------------------LTVFTAAENMLNGTIPAE- 234

Query: 253 ILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE-IP-NLKNQSQLQYLY 310
           +  L NL  L+L+ NSL  +  S+    S  L+ L+L + +L+  IP +L +   LQ L 
Sbjct: 235 LGRLENLEILNLANNSLTGEIPSQLGEMS-QLQYLSLMANQLQGLIPKSLADLGNLQTLD 293

Query: 311 LSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA----LRFIDLISNQLRG 366
           LS N ++ EIP   W +S   L  L L++N L G   P SI +    L  + L   QL G
Sbjct: 294 LSANNLTGEIPEEFWNMSQ--LLDLVLANNHLSG-SLPKSICSNNTNLEQLVLSGTQLSG 350

Query: 367 NIHQLPNNPI---------YIDFSNNNFTSSIPA---------------DTVNGTLPDTF 402
            I      P+          +D SNN+   SIP                +T+ GTL  + 
Sbjct: 351 EI------PVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSI 404

Query: 403 PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI 462
                LQ L L  N  +G +PK I+  + LEVL L  N+FS + P               
Sbjct: 405 SNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIP--------------- 449

Query: 463 KLQKILNI--FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLE 520
             Q+I N      ID   N+F+G I   +G LK L  L+L  N L G +P+S GN  +L 
Sbjct: 450 --QEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLN 507

Query: 521 SLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF 557
            LDL+ N LS +IPS    L  L  L L  N L+G  
Sbjct: 508 ILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNL 544

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 160/502 (31%), Positives = 224/502 (44%), Gaps = 80/502 (15%)

Query: 87  LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD 146
           LF L  L  L L+     G  IS ++  + SL  L L    F G+ P  I+ +  L  L 
Sbjct: 308 LFRLTQLTHLGLSENHLVG-PISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLT 366

Query: 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP 206
             FN  SG + +     L NL      DN L G IP S+     L+ L L++NQ  G IP
Sbjct: 367 VGFNNISGELPA-DLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIP 425

Query: 207 R--------FSNASSSALDTQI-KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLG 257
           R        F +   +    +I   +++C  L T     L ++ NNL GT++   I  L 
Sbjct: 426 RGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLET-----LSVADNNLTGTLK-PLIGKLQ 479

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317
            L  L +SYNSL            P+           REI NLK+   L  LYL  N  +
Sbjct: 480 KLRILQVSYNSLT----------GPIP----------REIGNLKD---LNILYLHSNGFT 516

Query: 318 REIPNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFIDLISNQLRGNIHQL---P 372
             IP  +  +++  L  L +  N L G   +  + +  L  +DL +N+  G I  L    
Sbjct: 517 GRIPREMSNLTL--LQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKL 574

Query: 373 NNPIYIDFSNNNFTSSIPA-----------DTVNGTLPDTFPRNCLLQT------LDLNG 415
            +  Y+    N F  SIPA           D  +  L  T P   L         L+ + 
Sbjct: 575 ESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSN 634

Query: 416 NRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSID 475
           N   GT+PK + K +M++ ++L NN FS   P SL              Q   N+FT +D
Sbjct: 635 NLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSL--------------QACKNVFT-LD 679

Query: 476 FSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
           FS NN  G I ++V   +  +  LNLS N+ +G IP SFGN+  L SLDLS NNL+  IP
Sbjct: 680 FSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIP 739

Query: 535 SQLASLYFLSYLNLSYNQLEGR 556
             LA+L  L +L L+ N L+G 
Sbjct: 740 ESLANLSTLKHLKLASNNLKGH 761

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  154 bits (389), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 167/569 (29%), Positives = 251/569 (44%), Gaps = 94/569 (16%)

Query: 66  HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD 125
           H+  LDLS   +   I  +     LH L  LNL      G  I  +L N  SL  L LS 
Sbjct: 235 HLAKLDLSYNPLKCSIPKS--FGELHNLSILNLVSAELIGL-IPPELGNCKSLKSLMLSF 291

Query: 126 AGFAGQIPVQISRMARLVALDFSFNQFSGSISSI--RWEHLLNLVCAVLSDNSLDGSIPR 183
              +G +P+++S +  L+      NQ SGS+ S   +W+ L +L+   L++N   G IP 
Sbjct: 292 NSLSGPLPLELSEIP-LLTFSAERNQLSGSLPSWMGKWKVLDSLL---LANNRFSGEIPH 347

Query: 184 SMFEFPMLQQLQLANNQFGGSIPR--FSNASSSALD-------TQIKRVYSCLGLRTQKL 234
            + + PML+ L LA+N   GSIPR    + S  A+D         I+ V+         L
Sbjct: 348 EIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFD----GCSSL 403

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 294
             LLL++N +NG++  D  L    L  LDL  N+   +     +  + ++E     +   
Sbjct: 404 GELLLTNNQINGSIPED--LWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLE 461

Query: 295 REIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI-- 351
             +P  + N + L+ L LS+NQ++ EIP  I +++   L  LNL+ N   G + P  +  
Sbjct: 462 GYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLT--SLSVLNLNANMFQG-KIPVELGD 518

Query: 352 -PALRFIDLISNQLRGNI---------------------HQLPNNPI------------- 376
             +L  +DL SN L+G I                       +P+ P              
Sbjct: 519 CTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSF 578

Query: 377 -----YIDFSNNNFTSSIPAD---------------TVNGTLPDTFPRNCLLQTLDLNGN 416
                  D S N  +  IP +                ++G +P +  R   L  LDL+GN
Sbjct: 579 LQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGN 638

Query: 417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFP------CSLYDAPITIKGLDIKLQKIL-- 468
              G++PK +     L+ LNL NNQ +   P       SL    +T   LD  +   L  
Sbjct: 639 ALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGN 698

Query: 469 -NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
               T +D S NN  G +  ++  ++ L GL +  N  TG IPS  GNL +LE LD+S N
Sbjct: 699 LKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSEN 758

Query: 528 NLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
            LS  IP+++  L  L +LNL+ N L G 
Sbjct: 759 LLSGEIPTKICGLPNLEFLNLAKNNLRGE 787

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
297735649	778	unnamed protein product [Vitis vinifera]	0.879	0.631	0.414	3e-93
359481302	988	PREDICTED: leucine-rich repeat receptor	0.856	0.483	0.403	5e-83
297735650	2134	unnamed protein product [Vitis vinifera]	0.965	0.252	0.365	4e-81
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.870	0.454	0.360	4e-80
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.872	0.460	0.360	1e-78
297735654	942	unnamed protein product [Vitis vinifera]	0.779	0.461	0.414	5e-78
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.876	0.463	0.360	6e-78
255579300	1065	serine-threonine protein kinase, plant-t	0.860	0.450	0.377	4e-77
315436722	1077	verticillium wilt resistance-like protei	0.824	0.427	0.352	1e-74
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.870	0.406	0.363	7e-73

>gi|297735649|emb|CBI18143.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 263/634 (41%), Positives = 330/634 (52%), Gaps = 143/634 (22%)

Query: 7   FFAINIAFVSGQCQ-------SDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGV 59
            F I+IA VSG+C         D++++LLQLK+SL F  + S+KL+ W +S  CC W GV
Sbjct: 18  LFRIHIALVSGECLGGSRLCLEDEKSMLLQLKNSLKFKSNVSMKLVTWNESVGCCSWEGV 77

Query: 60  DCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLT 119
             D  GHV+GLDLS+E ISGG                      FN    SSK +   +LT
Sbjct: 78  TWDSNGHVVGLDLSSELISGG----------------------FNS---SSKASIFQNLT 112

Query: 120 YLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG 179
            +NLS                         N  +G I S   + L+NLV   LS NSL+G
Sbjct: 113 RINLSH------------------------NHLTGPIPSSHLDGLVNLVTLDLSKNSLNG 148

Query: 180 SIPRSMFEFPMLQQLQLANNQFGGSIPRFS---------NASSSALDTQIKRVYSCLGLR 230
           S+P  +F  P LQ++QL+NNQF G + +FS         + SS+ L+ QI    S   L 
Sbjct: 149 SLPMPLFSLPSLQKIQLSNNQFSGPLSKFSVVPSVLDTLDLSSNNLEGQIP--VSIFDL- 205

Query: 231 TQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES--SRNYSFSPMLELLN 288
            Q L+ L LSSN  NGTV L     LGNL  L LSYN+L+++ S  +        L  L 
Sbjct: 206 -QCLSILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLK 264

Query: 289 LASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP 348
           LASCKLR +P+L  QS+L YL LS+NQI   IPNWI ++    L  LNLSHN L   Q  
Sbjct: 265 LASCKLRTLPDLSTQSRLTYLDLSDNQIPGSIPNWIRKIGNGSLLHLNLSHNLLEDLQET 324

Query: 349 YS--IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNF--------------------- 385
           +S   P+L  +DL SNQL G I   P    Y+D+S+N F                     
Sbjct: 325 FSNFTPSLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLS 384

Query: 386 ----TSSIPADTVN---------------------------------------GTLPDTF 402
               T SIP    N                                       G +P  F
Sbjct: 385 KNNITGSIPRSICNATYLQVLDFSNNNLSGKIPSCLIEYGTLGVLNLRRNNFSGAIPGKF 444

Query: 403 PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI 462
           P NCLLQTLDL+ N  +G +P S+A C  LEVLNLGNNQ +  FPC L +  IT     +
Sbjct: 445 PVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKN--ITT----L 498

Query: 463 KLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESL 522
           +L K+L ++TSID S NNF+G I E +G   SLY LNLSHN  TG IPSS GNL++LESL
Sbjct: 499 RLVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESL 558

Query: 523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
           DLS N LS  IP+QLA+L FLS LNLS+NQL GR
Sbjct: 559 DLSRNRLSGEIPTQLANLNFLSVLNLSFNQLVGR 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481302|ref|XP_003632605.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 226/560 (40%), Positives = 292/560 (52%), Gaps = 82/560 (14%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L LS    SG + ++  + +L  L  + LA  +F+G  I + +AN++ L Y++LS   F 
Sbjct: 321 LVLSDTKFSGKVPDS--IGNLKRLTRIELAGCNFSGP-IPNSMANLTQLVYMDLSGNAFF 377

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
           G +P   S    L  +D S N  +G I S  W+ L NLV   L +NSL+GS+P  +F   
Sbjct: 378 GPVP-SFSLSKNLTRIDLSHNHLAGQILSSHWDGLENLVTLDLRNNSLNGSLPMHLFSLS 436

Query: 190 MLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLSSNN 243
            LQ++QL+NNQF G    F   S S LDT       ++          Q L  L LS N 
Sbjct: 437 SLQKIQLSNNQFSGPFSEFEVKSFSVLDTLDLSSNNLEGPIPVSLFDLQHLNILDLSFNK 496

Query: 244 LNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLK 301
            NGTV+L     L NL  L LSYN+L+++ S RN +   +  L  L LASCKLR +P+L 
Sbjct: 497 FNGTVELSSYQKLRNLFTLSLSYNNLSINASVRNPTLPLLSNLTTLKLASCKLRTLPDLS 556

Query: 302 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS--IPALRFIDL 359
            QS L YL LS+NQI   IPNWIW++    L  LNLSHN L   Q P+S   P L  +DL
Sbjct: 557 TQSGLTYLDLSDNQIHGTIPNWIWKIGNGSLMHLNLSHNLLEDLQEPFSNFTPDLSSLDL 616

Query: 360 ISNQLRGNIHQLPNNPIYIDFSNNNF-------------------------TSSIPA--- 391
            SNQL G I   P    Y+D+SNN+F                         T SIP    
Sbjct: 617 HSNQLHGQIPTPPQFSSYVDYSNNSFNSSIPDDIGIYMSFALFFSLSKNNITGSIPRSIC 676

Query: 392 ------------DTVNGTLPD------------------------TFPRNCLLQTLDLNG 415
                       +T++G +P                          FP  CLLQTLDLN 
Sbjct: 677 NATYLRVLDFSDNTLSGKIPSCLIENGNLAVLNLRRNKFSGAILWEFPGECLLQTLDLNR 736

Query: 416 NRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSID 475
           N  +G +P+S+  CK LEVLNLGNN+ +D FPC L +    I  L + + +       I 
Sbjct: 737 NLLRGKIPESLGNCKALEVLNLGNNRMNDNFPCWLKN----ISSLRVLVLRANKFHGPIG 792

Query: 476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535
              +NF+G I E +G   SL  LNLSHN  TG IPSS GNL++LESLDLS N LS  IP+
Sbjct: 793 CPKSNFEGDIPEVMGNFTSLNVLNLSHNGFTGQIPSSIGNLRQLESLDLSRNWLSGEIPT 852

Query: 536 QLASLYFLSYLNLSYNQLEG 555
           QLA+L FLS LNLS+NQL G
Sbjct: 853 QLANLNFLSVLNLSFNQLVG 872

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735650|emb|CBI18144.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 265/725 (36%), Positives = 348/725 (48%), Gaps = 186/725 (25%)

Query: 8    FAINIAFVSGQCQSDQQTLLLQLKSSLT-------FDPSSSVKLMQWRQSTDCCDWSGVD 60
            F I+I  VSG+C SD +  L    S L        F+ + S KL+ W +S DC  W GV 
Sbjct: 464  FGIHITLVSGECLSDGRVCLEDEMSLLLRLKKTLKFNVAVSNKLVSWNRSADCSSWGGVT 523

Query: 61   CDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG-----------TQIS 109
             D  GHV+GLDLS+ESISGG  +++ LFSL YL+SLNLA  SF G           +QI 
Sbjct: 524  WDANGHVVGLDLSSESISGGFNSSSSLFSLQYLQSLNLAGNSFCGGLNWPNNSFCSSQIP 583

Query: 110  SKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFS-----------------FNQF 152
            S    +++L YLNLS++GF+GQIP + S +  LV +DFS                     
Sbjct: 584  SGFDRLANLIYLNLSNSGFSGQIPKEFSLLTSLVTIDFSSLGYLIGFPTLKLENPNLRML 643

Query: 153  SGSISSIRWEHL-------------LNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANN 199
              ++  +R  HL              NL    LS   L G+ P  + +   LQ L L+ N
Sbjct: 644  VQNLKELRELHLNGVDISAEGKECFSNLTHLQLSSCGLTGTFPEKIIQVTTLQILDLSIN 703

Query: 200  QFGGSIPRF-SNASSSAL---DTQI-KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKIL 254
                S+P F  N S   L   DT++  ++ + +G   +KLT + L+  + +G + L+ + 
Sbjct: 704  LLEDSLPEFPQNGSLETLVLSDTKLWGKLPNSMG-NLKKLTSIELARCHFSGPI-LNSVA 761

Query: 255  SLGNLAKLDLSYN---------SLAVDESSRNYSFSPML--------ELLNLASCKLRE- 296
            +L  L  LDLS N         SL+   +  N S++ ++        +L+NL +  LR  
Sbjct: 762  NLPQLIYLDLSENKFSGPIPSFSLSKRLTEINLSYNNLMGPIPFHWEQLVNLMNLDLRYN 821

Query: 297  ------IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL----SHNFLVGFQ 346
                   P+L +   LQ L L  NQIS  IP+     SV  L CL+     S+ F    +
Sbjct: 822  AITGNLPPSLFSLPSLQRLRLDNNQISGPIPD-----SVFELRCLSFLDLSSNKFNGKIE 876

Query: 347  APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDF------SNNNFTSSIPADTVNG---- 396
                  +L  +DL  NQ+ GNI   PN   YI F      S NN T  IPA   N     
Sbjct: 877  LSNGQSSLTHLDLSQNQIHGNI---PNIGTYIFFTIFFSLSKNNITGMIPASICNASYLR 933

Query: 397  -----------------------------------TLPDTFPRNCLLQTLDLNGNRPQGT 421
                                               T+P  F  NCLL+TLDLNGN  +G 
Sbjct: 934  VLDFSDNALSGMIPSCLIGNEILEVLNLRRNKLSATIPGEFSGNCLLRTLDLNGNLLEGK 993

Query: 422  VPKSIAKCKMLEVLNLGNNQFSDKFPCSL---------------YDAPI----------- 455
            +P+S+A CK LEVLNLGNNQ SD FPCSL               +  PI           
Sbjct: 994  IPESLANCKELEVLNLGNNQMSDFFPCSLKTISNLRVLVLRSNRFYGPIQSIPPGHCFKL 1053

Query: 456  ------------------------TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL 491
                                    T KGL+++L KIL +FT+IDFS NNF+G I E +G 
Sbjct: 1054 STLLPTILLVLQFGQVYYQDTVTVTSKGLEMQLVKILTVFTAIDFSFNNFQGEIPEAMGS 1113

Query: 492  LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
            L SLY LNLSHNALTG IPSS G L++LESLDLS N+L   IP Q  SL FLS+LNLS+N
Sbjct: 1114 LISLYALNLSHNALTGQIPSSLGKLRQLESLDLSQNSLRGEIPPQFVSLNFLSFLNLSFN 1173

Query: 552  QLEGR 556
            QLEG 
Sbjct: 1174 QLEGE 1178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 236/655 (36%), Positives = 307/655 (46%), Gaps = 169/655 (25%)

Query: 63  EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLN 122
           + G +  L L     SG + N+  + +L  L  + LAR +F+G  I +  AN++ L YL+
Sbjct: 312 QNGSLETLVLPDTKFSGKVPNS--IGNLKRLTRIELARCNFSGP-IPNSTANLAQLVYLD 368

Query: 123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIP 182
           LS+  F+G IP   S    L  ++ S N  +G I S   + L+NLV   L DNSL+GS+P
Sbjct: 369 LSENKFSGPIP-PFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILDLRDNSLNGSLP 427

Query: 183 RSMFEFPMLQQLQLANNQFGGSIPRFS---------NASSSALDTQIKRVYSCLGLRTQK 233
             +F  P LQ++QL+NNQF G + +FS         + SS+ L+ QI           Q 
Sbjct: 428 MPLFSLPSLQKIQLSNNQFSGPLSKFSVVPSVLDTLDLSSNNLEGQIPVSI----FDLQC 483

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES--SRNYSFSPMLELLNLAS 291
           L  L LSSN  NGTV L     LGNL  L LSYN+L+++ S  +        L  L LAS
Sbjct: 484 LNILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLAS 543

Query: 292 CKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS- 350
           CKLR +P+L  QS+L YL LS+NQI   IPNWIW++    L  LNLSHN L   Q P S 
Sbjct: 544 CKLRTLPDLSTQSRLTYLDLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLLEDLQEPLSN 603

Query: 351 -IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNF------------------------ 385
             P L  +DL SNQL G I   P    Y+D+S+N F                        
Sbjct: 604 FTPYLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKNN 663

Query: 386 -TSSIPADTVN---------------------------------------GTLPDTFPRN 405
            T SIP    N                                       G +P  FP N
Sbjct: 664 ITGSIPRSICNATYLQVLDFSDNHLSGKIPSCLIEYGTLGVLNLRRNNFSGAIPGKFPVN 723

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKC------------------------------------ 429
           CLLQTLDL+ N  +G +P S+A C                                    
Sbjct: 724 CLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVLRGNN 783

Query: 430 --------------KMLEVLNLGNNQFSDKFPCSLYD----------------------- 452
                          ML++++L  N FS K P + +                        
Sbjct: 784 FQGSIGCCKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHLQFRV 843

Query: 453 -----------APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLS 501
                        +T KGL+++L K+L ++TSID S NNF+G I E +G   SLY LNLS
Sbjct: 844 LQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLNLS 903

Query: 502 HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
           HN  TG IPSS GNL++LESLDLS N LS  IP+QLA+L FLS LNLS+NQL GR
Sbjct: 904 HNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLVGR 958

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 236/654 (36%), Positives = 308/654 (47%), Gaps = 167/654 (25%)

Query: 63  EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLN 122
           + G +  L LS    SG + ++  +  L  L  + LAR +F+G  I S +AN++ L YL+
Sbjct: 294 QGGSLRTLVLSDTKFSGHMPDS--IGKLEMLSWIELARCNFSGP-IPSSIANLTRLLYLD 350

Query: 123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIP 182
           LS  GF G IP        L  ++ S N F+G I S  WE  LNL+   L  N L G +P
Sbjct: 351 LSSNGFTGSIP-SFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLP 409

Query: 183 RSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT--------QIKRVYSCLGLRTQKL 234
            S+F  P LQ++QL  NQF G +  FS  SS  L+         Q     S   LR  ++
Sbjct: 410 LSLFSHPSLQKIQLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGSIPLSVFDLRALRV 469

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASC 292
             L LS NN++GT++L K   LGNL  L LS+N L+++  S N SFS  P    L LASC
Sbjct: 470 --LELSFNNVSGTLELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASC 527

Query: 293 KLREIPNLKNQSQ-LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS- 350
            L+  P+L+N S+ L YL LS+NQI  EIP+WIW +    L  LNLSHN LV  Q P+  
Sbjct: 528 NLKRFPDLRNNSKFLGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPFPN 587

Query: 351 -IPALRFIDLISNQLRGNIHQLPNNPIYIDFSN-------------------------NN 384
             P L  +DL SN LRG I   P    Y+D+SN                         NN
Sbjct: 588 LPPYLFTLDLHSNLLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNN 647

Query: 385 FTSSIPADTVN---------------------------------------GTLPDTFPRN 405
            +  IP    N                                       GT+   FP N
Sbjct: 648 ISGIIPESICNATNVQVLDLSDNALSGEIPSCLIENEALAVLNLRRNMFSGTISGNFPGN 707

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCK----------------------------------- 430
           C+L TLDLNGN  +GT+P+S+A CK                                   
Sbjct: 708 CILHTLDLNGNLLEGTIPESVANCKELEVLNLGNNRIDDKFPCWLKNMSSLRVLVLRANR 767

Query: 431 ---------------MLEVLNLGNNQFSDKFPC--------------------------- 448
                          ML++++L  N FS K P                            
Sbjct: 768 FHGPIGCPNSNSTWPMLQIVDLAYNNFSGKLPAKGFLTWKAMMASEDEVQSKLNHIQFKI 827

Query: 449 ----SLY--DA-PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLS 501
                LY  DA  +T KG +++L K+L +FTSIDFS+N F+G I E++G   SLY LNLS
Sbjct: 828 LEFSELYYQDAVTVTSKGQEMELVKVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLS 887

Query: 502 HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            N  TG IPSS G L++LESLDLS N+LS  IP++L SL FLS L+LS+NQL G
Sbjct: 888 GNGFTGQIPSSMGQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDLSFNQLVG 941

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735654|emb|CBI18148.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 270/514 (52%), Gaps = 79/514 (15%)

Query: 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDN 175
           SL  L LSD  F+G++P  I  + RL  ++ +   FSG I +S+     LNLV   L +N
Sbjct: 317 SLDSLVLSDTKFSGKVPDSIGNLKRLTRIELAGCNFSGPIPNSMANLTQLNLVTLDLRNN 376

Query: 176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGL 229
           SL+GS+P  +F    LQ++QL+NNQF G    F   S S LDT       ++        
Sbjct: 377 SLNGSLPMHLFSLSSLQKIQLSNNQFSGPFSEFEVKSFSVLDTLDLSSNNLEGPIPVSLF 436

Query: 230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELL 287
             Q L  L LS N  NGTV+L     L NL  L LSYN+L+++ S RN +   +  L  L
Sbjct: 437 DLQHLNILDLSFNKFNGTVELSSYQKLRNLFTLSLSYNNLSINASVRNPTLPLLSNLTTL 496

Query: 288 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA 347
            LASCKLR +P+L  QS L YL LS+NQI   IPNWIW++    L  LNLSHN L   Q 
Sbjct: 497 KLASCKLRTLPDLSTQSGLTYLDLSDNQIHGTIPNWIWKIGNGSLMHLNLSHNLLEDLQE 556

Query: 348 PYS--IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNF-------------------- 385
           P+S   P L  +DL SNQL G I   P    Y+D+SNN+F                    
Sbjct: 557 PFSNFTPDLSSLDLHSNQLHGQIPTPPQFSSYVDYSNNSFNSSIPDDIGIYMSFALFFSL 616

Query: 386 -----TSSIPA---------------DTVNGTLPDT------------------------ 401
                T SIP                +T++G +P                          
Sbjct: 617 SKNNITGSIPRSICNATYLRVLDFSDNTLSGKIPSCLIENGNLAVLNLRRNKFSGAILWE 676

Query: 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
           FP  CLLQTLDLN N  +G +P+S+  CK LEVLNLGNN+ +D FPC L +    I  L 
Sbjct: 677 FPGECLLQTLDLNRNLLRGKIPESLGNCKALEVLNLGNNRMNDNFPCWLKN----ISSLR 732

Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLES 521
           + + +       I    +NF+G I E +G   SL  LNLSHN  TG IPSS GNL++LES
Sbjct: 733 VLVLRANKFHGPIGCPKSNFEGDIPEVMGNFTSLNVLNLSHNGFTGQIPSSIGNLRQLES 792

Query: 522 LDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           LDLS N LS  IP+QLA+L FLS LNLS+NQL G
Sbjct: 793 LDLSRNWLSGEIPTQLANLNFLSVLNLSFNQLVG 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 235/652 (36%), Positives = 304/652 (46%), Gaps = 163/652 (25%)

Query: 63  EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLN 122
           + G +  L LS    SG + N+  + +L  L  + LA   F+G  I + +AN++ L YL+
Sbjct: 293 QGGCLETLVLSVTKFSGKLPNS--IANLKRLARIELADCDFSGP-IPTVMANLTQLVYLD 349

Query: 123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIP 182
            S   F+G IP   S    L  +D S N  +G ISS  W   +NLV      NSL GS+P
Sbjct: 350 FSHNKFSGAIP-SFSLSKNLTLIDLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLP 408

Query: 183 RSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTP 236
             +F  P LQ+++L NNQF G    F   SS  +DT       ++          Q L  
Sbjct: 409 MPLFSLPSLQKIKLNNNQFSGPFGEFPATSSHPMDTLDLSGNNLEGPIPVSLFDLQHLNI 468

Query: 237 LLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYS--FSPMLELLNLASCKL 294
           L LSSN  NGTV+L +   LGNL  L LSYN+L+++ S  N +    P+L  L LASCKL
Sbjct: 469 LDLSSNKFNGTVELSQFQKLGNLTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKL 528

Query: 295 REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS--IP 352
           R +P+L +QS L  L LS+NQI  +IPNWIW++    L  LNLSHN L G Q P S   P
Sbjct: 529 RTLPDLSSQSMLVILDLSQNQIPGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEPLSNLPP 588

Query: 353 ALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNF-------------------------TS 387
            L  +DL SNQLRG I   P++  Y+D+SNN F                         T 
Sbjct: 589 FLSTLDLHSNQLRGPIPTPPSS-TYVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITG 647

Query: 388 SIPADTVN---------------------------------------GTLPDTFPRNCLL 408
            IPA   N                                       GT+P  FP +CLL
Sbjct: 648 IIPASICNAHYLQVLDFSDNSLSGKIPSCLIENGDLAVLNLRRNKFKGTIPGEFPGHCLL 707

Query: 409 QTLD------------------------------------------------LNGNRPQG 420
           QTLD                                                L  N+  G
Sbjct: 708 QTLDLNGNLLEGKIPESLANCKALEVLNLGNNRMNDIFPCWLKNISSLRVLVLRANKFHG 767

Query: 421 TV--PKSIAKCKMLEVLNLGNNQFSDKFPCSLY--------------------------- 451
            +  P S +   ML++++L  N FS   P   +                           
Sbjct: 768 PIGCPNSNSTWPMLQIVDLAWNNFSGVLPEKCFSNWRAMMAGEDDVQSKSNHLRFKVLAF 827

Query: 452 ------DA-PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504
                 DA  +T KG +++L K+L +FTSIDFS NNF+G I ED+G LK LY LNLS N 
Sbjct: 828 SQLYYQDAVTVTSKGQEMELVKVLTLFTSIDFSCNNFQGDIPEDIGDLKLLYVLNLSGNG 887

Query: 505 LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
            TG IPSS G L++LESLDLS+N LS  IP+QL+SL FLS LNLS+N L GR
Sbjct: 888 FTGQIPSSLGQLRQLESLDLSLNKLSGEIPAQLSSLNFLSVLNLSFNGLVGR 939

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579300|ref|XP_002530495.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223529952|gb|EEF31879.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 310/601 (51%), Gaps = 121/601 (20%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L+LS  + SG + ++  + +L  L  +NLA  +F G  I + + N++ L YL+ S   F 
Sbjct: 292 LELSNTNFSGRLPDS--IGALGNLTRINLATCTFTG-PIPTSMENLTELVYLDFSSNTFT 348

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
           G IP  +    +L+ +DFS+N  SG IS+I W+ L NLV   L +NS +GSIP S+F   
Sbjct: 349 GSIP-SLDGSKKLMYVDFSYNYLSGVISNIDWKGLSNLVHIDLKNNSFNGSIPLSLFAIQ 407

Query: 190 MLQQLQLANNQFGGSIPRFSNASSSALDT--------QIKRVYSCLGLRTQKLTPLLLSS 241
            LQ++ L+ NQFGG IP F NAS+ +LDT        +    +S   LR  +L  L L+S
Sbjct: 408 SLQKIMLSYNQFGGQIPEFPNASTLSLDTLDLSNNNLEGPVPHSVFELR--RLNVLSLAS 465

Query: 242 NNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNY--SFSPMLELLNLASCKLREIPN 299
           N  +GT++LD+I  L NL  +DLSYN L VD ++ N   SF   L  L LASC LR  P+
Sbjct: 466 NKFSGTIKLDQIQKLVNLTTVDLSYNKLTVDVNATNSTSSFPLRLTTLKLASCNLRMFPD 525

Query: 300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIP-ALRFID 358
           L+NQS++  L L++N+I+  +P WI +V    L  LNLS N LV    P S+   L  +D
Sbjct: 526 LRNQSRITNLDLADNKIAGSVPPWIGQVGNGSLLNLNLSRNLLVSLPEPLSLSNTLAVLD 585

Query: 359 LISNQLRGNIHQLP----------------------------------NNPI-------- 376
           L SNQL+GNI   P                                  NN +        
Sbjct: 586 LHSNQLQGNIPSPPPLVSVVDLSNNNFSSSIPYNIGDNLSVAIFFSLSNNRVEGVIPESL 645

Query: 377 -------YIDFSNNNFTSSIPA----------------DTVNGTLPDTFPRNCLLQTLDL 413
                   +D SNN+   SIP+                +   G +PD F R C L+TLDL
Sbjct: 646 CTASYLEVLDLSNNSLIGSIPSCLIERSETLGVLNLRKNNFTGRIPDNFSRKCKLETLDL 705

Query: 414 NGNRPQGTVPKSIAKCKMLEVLNLGN--------NQFSDKFPCSL--------------- 450
           +GN  +G VP+S+  C +LE  ++G         N F+ + P  +               
Sbjct: 706 SGNLLEGKVPESLINCTILEQCHMGRLQIVDIALNSFTGRLPNRMLSKWKAMIGAGNETH 765

Query: 451 --------------YDAPITI--KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKS 494
                         Y   IT+  KGL+++L KIL +FTSID S N F+G I E +G   +
Sbjct: 766 GPIKFKFLKVGGLYYQDSITVTSKGLEMQLVKILTLFTSIDVSCNKFQGQIPERLGQFSA 825

Query: 495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           LY LNLSHNAL G IP S GN+  LESLDLS N+L+  IP QL  L FLS+LNLS N+L 
Sbjct: 826 LYILNLSHNALDGQIPPSLGNVSNLESLDLSNNHLTGEIPRQLTDLTFLSFLNLSGNELV 885

Query: 555 G 555
           G
Sbjct: 886 G 886

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436722|gb|ADU18534.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 228/647 (35%), Positives = 303/647 (46%), Gaps = 187/647 (28%)

Query: 93  LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQF 152
           L++L L+ T F G QI   L N+  LT + L+   F+G IP  + ++ +LV+LDFS N F
Sbjct: 313 LQALALSSTKFGG-QIPESLDNLGQLTRIELAGCNFSGPIPKAVEKLTQLVSLDFSNNNF 371

Query: 153 SG-----------------------SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
           SG                       +I S  W  L  L  A L DN L G+IP ++F  P
Sbjct: 372 SGPIPSFSSSRNLTNLSLAHNKLVGTIHSTDWSSLSKLEDADLGDNKLSGTIPPTLFGIP 431

Query: 190 MLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLSSNN 243
            LQ+L L++NQF GSI  F + +SS L+T      ++K  +       + L  L LSSNN
Sbjct: 432 SLQRLDLSHNQFNGSIGDFHDKASSLLNTLDLSNNKLKGQFPTPLFELRGLEILHLSSNN 491

Query: 244 LNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSF--SPMLELLNLASCKLREIPN-L 300
            +G + ++   +LGNL  LDLS+N L++D ++ N S    P    L LASC L E P  L
Sbjct: 492 FSGLIPMNAFQNLGNLLSLDLSHNRLSIDATATNISLLSFPTFTGLGLASCNLTEFPGFL 551

Query: 301 KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS--IPALRFID 358
           KNQS L YL LS N I  +IP+WIW+   + L  LNLS NFLVGF+ P      +++ ID
Sbjct: 552 KNQSSLMYLDLSNNHIHGKIPDWIWKP--IDLLRLNLSDNFLVGFERPVKNITSSVQIID 609

Query: 359 LISNQLRGNIHQLPNNPIYIDFS-------------------------NNNFTSSIPA-- 391
           L  NQL+G I     +  Y+D+S                         NNN   SIP   
Sbjct: 610 LHVNQLQGEIPIPTLDATYLDYSDNNFSSVLPAHIGDSLQRVSFFSISNNNIHGSIPPSI 669

Query: 392 --------------------------------------DTVNGTLPDTFPRNCLLQTLDL 413
                                                 + ++G + DTF ++C LQTL L
Sbjct: 670 CSSTSLRVLDLSNNSLSGPIPQCLFQMSGSLGVLDLRQNNLSGIISDTFSKSCKLQTLKL 729

Query: 414 NGNRPQGTVP---------------------------KSIAKCK---------------- 430
           + NR +G VP                           K+IAK                  
Sbjct: 730 DQNRLEGKVPKSLGNCKMLEVLDIGNNQINDSFPWHLKNIAKLHVLVLRSNKFNGHIDCS 789

Query: 431 -------MLEVLNLGNNQFSDKFPCSL---YDA--------------------------- 453
                  ML++ +L +N FS K   +    +DA                           
Sbjct: 790 GNNGGWSMLQIFDLASNNFSGKLHLTCLGTWDAMQHNPYSNLLELKHLHFVDSGSGGGTR 849

Query: 454 -----PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS 508
                 IT KGL+++L KIL +FTSID S NNF+GPI E +G  K L+GLN SHNA TG 
Sbjct: 850 YQDAITITTKGLELELVKILPVFTSIDISWNNFEGPIPEVIGKFKELHGLNFSHNAFTGP 909

Query: 509 IPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           IPSSFGNL+ LESLDLS N+L   IP QLA+L FLS LN+S N+L G
Sbjct: 910 IPSSFGNLRELESLDLSSNSLRGEIPLQLANLNFLSCLNVSNNKLVG 956

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 238/655 (36%), Positives = 312/655 (47%), Gaps = 169/655 (25%)

Query: 63   EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLN 122
            + G +  L L     SG + N+  + +L  L  + LAR +F+G  I +  AN++ L YL+
Sbjct: 365  QNGSLETLVLPDTKFSGKVPNS--IGNLKRLTRIELARCNFSGP-IPNSTANLARLVYLD 421

Query: 123  LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIP 182
            LS+  F+G IP   S    L  ++ S N  +G I S   + L+NLV   LS NSL+GS+P
Sbjct: 422  LSENKFSGPIP-PFSLSKNLTRINLSHNHLTGPIPSSHLDGLVNLVTLDLSKNSLNGSLP 480

Query: 183  RSMFEFPMLQQLQLANNQFGGSIPRFS---------NASSSALDTQIKRVYSCLGLRTQK 233
              +F  P LQ++QL+NNQF G + +FS         + SS+ L+ QI    S   L  Q 
Sbjct: 481  MPLFSLPSLQKIQLSNNQFSGPLSKFSVVPSVLDTLDLSSNNLEGQIP--VSIFDL--QC 536

Query: 234  LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES--SRNYSFSPMLELLNLAS 291
            L+ L LSSN  NGTV L     LGNL  L LSYN+L+++ S  +        L  L LAS
Sbjct: 537  LSILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLAS 596

Query: 292  CKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS- 350
            CKLR +P+L  QS+L YL LS+NQI   IPNWI ++    L  LNLSHN L   Q  +S 
Sbjct: 597  CKLRTLPDLSTQSRLTYLDLSDNQIPGSIPNWIRKIGNGSLLHLNLSHNLLEDLQETFSN 656

Query: 351  -IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNF------------------------ 385
              P+L  +DL SNQL G I   P    Y+D+S+N F                        
Sbjct: 657  FTPSLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKNN 716

Query: 386  -TSSIPADTVN---------------------------------------GTLPDTFPRN 405
             T SIP    N                                       G +P  FP N
Sbjct: 717  ITGSIPRSICNATYLQVLDFSNNNLSGKIPSCLIEYGTLGVLNLRRNNFSGAIPGKFPVN 776

Query: 406  CLLQTLDLNGNRPQGTVPKSIAKC------------------------------------ 429
            CLLQTLDL+ N  +G +P S+A C                                    
Sbjct: 777  CLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVLRGNN 836

Query: 430  --------------KMLEVLNLGNNQFSDKFPCSLY------------------------ 451
                           ML++++L  N FS K P + +                        
Sbjct: 837  FQGSIGCRKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHLQFRV 896

Query: 452  ---------DA-PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLS 501
                     DA  +T KGL+++L K+L ++TSID S NNF+G I E +G   SLY LNLS
Sbjct: 897  LQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLNLS 956

Query: 502  HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
            HN  TG IPSS GNL++LESLDLS N LS  IP+QLA+L FLS LNLS+NQL GR
Sbjct: 957  HNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNLSFNQLVGR 1011

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.840	0.580	0.302	3.2e-41
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.854	0.670	0.305	9.5e-38
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.835	0.550	0.301	1.1e-37
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.813	0.612	0.281	4e-37
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.853	0.595	0.280	5.2e-37
TAIR|locus:2046535	740	RLP28 "receptor like protein 2	0.725	0.547	0.298	8.4e-37
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.799	0.357	0.296	2.4e-36
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.836	0.475	0.298	3.1e-36
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.797	0.408	0.293	1e-35
TAIR|locus:2184058	1048	AT5G10020 [Arabidopsis thalian	0.801	0.426	0.299	2.6e-35

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 3.2e-41, P = 3.2e-41
 Identities = 156/515 (30%), Positives = 238/515 (46%)

Query:    50 STDC--CDW-SGVDCD-EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG 105
             S+DC   D+ +GV CD + G V  L L +  + G ++  + LF L +LR LNL+  +F  
Sbjct:    52 SSDCNQTDYFNGVQCDNKTGVVTKLQLPSGCLHGSMKPNSSLFGLQHLRYLNLSNNNFTS 111

Query:   106 TQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL 165
               + S   N++ L  L LS  GF GQ+P   S +++L  LD S N+ +GS   +  ++L 
Sbjct:   112 ASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSFPFV--QNLT 169

Query:   166 NLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYS 225
              L   VLS N   G+IP S+   P L  L L  N   GSI   ++++SS L+        
Sbjct:   170 KLSILVLSYNHFSGTIPSSLLTLPFLSSLDLRENYLTGSIEAPNSSTSSRLEFMYLGNNH 229

Query:   226 CLGLRTQ---KLTPXXXXXXXXXGT---VQLDKILSLGNLAKLDLSYNSLAVDESSRNYS 279
               G   +   KL            T   + L+   S  +L +L LS NSL     + +  
Sbjct:   230 FEGQILEPISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSLLATSITSDSK 289

Query:   280 FSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 338
                 LE L L SC L E P  LKN ++L+++ LS N+I  ++P W W +    L  +NL 
Sbjct:   290 IPLNLENLVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWNLP--RLRRVNLF 347

Query:   339 HNFLVGFQAPYSI---PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVN 395
             +N     +    +    ++R +DL  N  RG   + P +   +   NN+FT +IP +T N
Sbjct:   348 NNLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLETCN 407

Query:   396 GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK-MLEVLNLGNNQFSDKFPCSLYDAP 454
                     R+ L   LDL+ N   G +P+ ++  +  L V+NL  N      P    D  
Sbjct:   408 --------RSSLA-ILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGA 458

Query:   455 ITIKGLDI-------KLQK-ILNI----FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSH 502
             + ++ LD+       KL + +LN     F S+D   N  K      +  L  L  L L  
Sbjct:   459 L-LRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDH--NKIKDTFPFWLKALPDLQALTLRS 515

Query:   503 NALTGSI-PSSFGNLK--RLESLDLSMNNLSRAIP 534
             N   G I P   G L   +L  L++S NN + ++P
Sbjct:   516 NKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLP 550

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 9.5e-38, P = 9.5e-38
 Identities = 155/508 (30%), Positives = 236/508 (46%)

Query:    43 KLMQW-RQSTDCCDWSGVDCD-EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLAR 100
             K   W   ++DCC+W GV C+ ++G VI LDLS   + G   + + + +LH+L +L+L+ 
Sbjct:    71 KTESWGNNNSDCCNWEGVTCNAKSGEVIELDLSCSYLHGRFHSNSSIRNLHFLTTLDLSF 130

Query:   101 TSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSI-SSI 159
               F G QI S + N+S LTYL+LS   F+GQ+P  I  ++ L  LD   NQFSG + SSI
Sbjct:   131 NDFKG-QIMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVPSSI 189

Query:   160 RWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP----RFSNASSSA 215
                +L +L    LS N   G  P S+     L  L L  N F G IP      SN +S  
Sbjct:   190 G--NLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLY 247

Query:   216 L--DTQIKRVYSCLGLRTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKLDLSYNSLAVDE 273
             L  +    ++ S +G  +Q LT          G +    + +L NL  ++LSYN+  +  
Sbjct:   248 LCKNNFSGQIPSFIGNLSQ-LTRLDLSSNNFFGEIP-GWLWTLPNLFYVNLSYNTF-IGF 304

Query:   274 SSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGL 332
                N     M  LL   +    +IP+ +     L+ L LS+N  S  IP  +  +    L
Sbjct:   305 QRPNKPEPSMGHLLGSNNNFTGKIPSFICELRSLETLDLSDNNFSGLIPRCMGNLKS-NL 363

Query:   333 HCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD 392
               LNL  N L G    +    LR +D+  NQL G   +LP +   + F +     ++ ++
Sbjct:   364 SHLNLRQNNLSGGLPKHIFEILRSLDVGHNQLVG---KLPRS---LRFFSTLEVLNVESN 417

Query:   393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452
              +N T P        LQ L L  N   G + +  A    L ++++ +N F+   P   + 
Sbjct:   418 RINDTFPFWLTSLPKLQVLVLRSNAFHGPIHE--ASFLKLRIIDISHNHFNGTLPSDYFV 475

Query:   453 --APITIKGLDIKLQKILNIFTSIDFSTNNF---KGPILEDVGLLKSLYGLNLSHNALTG 507
               + ++  G D + +   N   S+ +  +     KG   E + +L     L+ S N   G
Sbjct:   476 KWSAMSSLGTD-EDRSNANYMGSVYYQDSMVLMNKGVESELIRILTIYTALDFSGNKFEG 534

Query:   508 SIPSSFGNLKRLESLDLSMNNLSRAIPS 535
              IP S G LK L  L+LS N  +  IPS
Sbjct:   535 EIPKSIGLLKELLVLNLSNNAFTGHIPS 562

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 156/517 (30%), Positives = 227/517 (43%)

Query:    47 WRQSTDCCDWSGVDC-DEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG 105
             W +STDCC W+GV C D++G VI LD+    ++  ++  + LF L YLR L+L   +  G
Sbjct:    65 WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query:   106 TQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL 165
              +I S L N+S LT +NL    F G+IP  I  + +L  L  + N  +G I S    +L 
Sbjct:   125 -EIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPS-SLGNLS 182

Query:   166 NLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP----RFSNASSSAL--DTQ 219
              LV   L  N L G IP S+ +   L+ L LA+N   G IP      SN     L  +  
Sbjct:   183 RLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQL 242

Query:   220 IKRVYSCLGLRTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYS 279
             +  V + +G    +L           G + +    S  NL KL +   S     S+  + 
Sbjct:   243 VGEVPASIG-NLIELRVMSFENNSLSGNIPI----SFANLTKLSIFVLSSNNFTSTFPFD 297

Query:   280 FSPM--LELLNLASCKLR-EIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCL 335
              S    LE  +++        P +L     L+ +YL ENQ +  I  +    S   L  L
Sbjct:   298 MSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPI-EFANTSSSTKLQDL 356

Query:   336 NLSHNFLVGFQAPYSIPAL---RFIDLISNQLRGNIHQLPN---NPIYIDFSNNNFTSSI 389
              L  N L G   P SI  L     +D+  N   G I    +   N +++D S NN    +
Sbjct:   357 ILGRNRLHG-PIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEV 415

Query:   390 PA-----DTV----NG--TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLG 438
             PA     +T+    N   +  +T     L++ LDLN N  QG +P  I K   L  L+L 
Sbjct:   416 PACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLS 475

Query:   439 NNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGL 498
             NN FS   P  + +   +IK L++                NNF G + +       L  L
Sbjct:   476 NNLFSGSIPSCIRNFSGSIKELNL--------------GDNNFSGTLPDIFSKATELVSL 521

Query:   499 NLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535
             ++SHN L G  P S  N K LE +++  N +    PS
Sbjct:   522 DVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPS 558

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 4.0e-37, P = 4.0e-37
 Identities = 141/501 (28%), Positives = 220/501 (43%)

Query:    46 QWRQSTDCCDWSGVDCD-EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFN 104
             +WR +TDCC W GV CD + G V+ LDL    ++G + + + LF L +L+ L L     +
Sbjct:     4 KWRNNTDCCSWDGVSCDPKTGVVVELDLQYSHLNGPLRSNSSLFRLQHLQKLVLGSNHLS 63

Query:   105 GTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSG----SISSIR 160
             G  +   + N+  L  L L +    G+IP  +  ++ L  LD S+N F+     S+ ++ 
Sbjct:    64 GI-LPDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLN 122

Query:   161 --WEHLLNLVCAV---LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSA 215
                + LL L       L DN L G +P +M     L+   ++ N F G+IP       S 
Sbjct:   123 RLTDMLLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSL 182

Query:   216 LDTQIKRVYSCLGLRTQKLTPXXXXXXXXXGT-------VQLDKILSLGNLAKLDLSYNS 268
             +   + R           ++          G        V L     L +L  LD+S  +
Sbjct:   183 ILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGIN 242

Query:   269 LAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRV 327
             L +   S   S    +E L L SC + E P  L+NQ+ L+YL +S NQI  ++P W+W  
Sbjct:   243 LKI---SSTVSLPSPIEYLGLLSCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLW-- 297

Query:   328 SVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFT 386
             S+  L  +N+SHN   GF+ P   I   R  +L+   +  NI Q P   + +   N  F+
Sbjct:   298 SLPELRYVNISHNSFNGFEGPADVIQGGR--ELLVLDISSNIFQDPFPLLPVVSMNYLFS 355

Query:   387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKF 446
             S+   +  +G +P T      L+ L L+ N   G++P+       L VL+L NN  S  F
Sbjct:   356 SN---NRFSGEIPKTICELDNLRILVLSNNNFSGSIPRCFENLH-LYVLHLRNNNLSGIF 411

Query:   447 PCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
             P          + +   LQ       S D   N F G + + +     +  LN+  N + 
Sbjct:   412 P---------EEAISHHLQ-------SFDVGHNLFSGELPKSLINCSDIEFLNVEDNRIN 455

Query:   507 GSIPSSFGNLKRLESLDLSMN 527
              + PS    L  L+ L L  N
Sbjct:   456 DTFPSWLELLPNLQILVLRSN 476

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 5.2e-37, P = 5.2e-37
 Identities = 149/532 (28%), Positives = 241/532 (45%)

Query:    38 PSSSVKLMQWRQS--TDCCDWS----GVDCDEA-GHVIGLDLSTESISGGIENAAILFSL 90
             P     L+Q++    +D C+ S    GV CD   G V  L L +   +G ++  + LF L
Sbjct:    30 PDQIQALIQFKNEFESDGCNRSDYLNGVQCDNTTGAVTKLQLPSGCFTGTLKPNSSLFEL 89

Query:    91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFN 150
             H LR LNL+  +F  + + S+ +N++ L  L+L+ + F GQ+P  IS +  L  L+ S N
Sbjct:    90 HQLRYLNLSHNNFTSSSLPSEFSNLTRLEVLSLASSSFTGQVPSSISNLILLTHLNLSHN 149

Query:   151 QFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFS 209
             + +GS   +R  +L  L    LS N   G+IP  +    P L  L L  N   GSI   +
Sbjct:   150 ELTGSFPPVR--NLTKLSFLDLSYNQFSGAIPFDLLPTLPFLSYLDLKKNHLTGSIDVPN 207

Query:   210 NASSSALD------TQIK-RVYSCLGLRTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKL 262
             ++SSS L        Q + ++   +  +   L             + L     L +L   
Sbjct:   208 SSSSSKLVRLSLGFNQFEGKIIEPIS-KLINLNHLELASLNISHPIDLRVFAPLKSLLVF 266

Query:   263 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNL-KNQSQLQYLYLSENQISREIP 321
             D+  N L     S +  F   L  L L  C + E PN+ K    L+++ +S N I  ++P
Sbjct:   267 DIRQNRLLPASLSSDSEFPLSLISLILIQCDIIEFPNIFKTLQNLEHIDISNNLIKGKVP 326

Query:   322 NWIWRVSVVGLHCLNLSHNFLVGFQAPYSI---PALRFIDLISNQLRGNIHQLPNNPIYI 378
              W W++  + +   NL +N L GF+    +    +++ +D   N + G     P   IY+
Sbjct:   327 EWFWKLPRLSI--ANLVNNSLTGFEGSSEVLLNSSVQLLDFAYNSMTGAFPTPPLGSIYL 384

Query:   379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLG 438
                NN+FT +IP    N        R+ L+  LDL+ N+  G +P+ ++    L+V+NL 
Sbjct:   385 SAWNNSFTGNIPLSICN--------RSSLI-VLDLSYNKFTGPIPQCLSN---LKVVNLR 432

Query:   439 NNQFSDKFPCSLYDAPITIKGLDI-------KLQKILNIFTSIDF-STNNFKGPILED-- 488
              N      P   +    T + LD+       KL K L   +S+ F S +N +   +ED  
Sbjct:   433 KNSLEGSIPDEFHSGAKT-QTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNR---IEDTF 488

Query:   489 ---VGLLKSLYGLNLSHNALTGSI-PSSFGNLK--RLESLDLSMNNLSRAIP 534
                +  L +L+ L L  N   G + P   G L    L  L+LS N+ + ++P
Sbjct:   489 PFWLKALPNLHVLTLRSNRFFGHLSPPDRGPLAFPELRILELSDNSFTGSLP 540

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046535 RLP28 "receptor like protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 8.4e-37, P = 8.4e-37
 Identities = 131/439 (29%), Positives = 211/439 (48%)

Query:    57 SGVDCDEA-GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANI 115
             +GV CD + G V  L L+   +SG +   + LF  H LR LNL+  +F  T   S+  N+
Sbjct:    66 NGVWCDNSTGVVTKLQLNA-CLSGTLNPNSSLFWFHQLRFLNLSHNNFTSTSFPSEFGNL 124

Query:   116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
             + +  L+LS   F GQ+P   S +++L  L  S NQ +G    +  ++L NL      +N
Sbjct:   125 NKVEVLDLSFNSFTGQVPSSFSNLSQLTELHLSNNQLTGGFPQV--QNLTNLSHLDFENN 182

Query:   176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLT 235
                G++P S+   P L  L L  N F GSI   +++    L   +K     +     KL 
Sbjct:   183 KFSGTVPSSLLMMPFLSYLNLYGNHFTGSIEVSTSSKLEILYLGLKPFEGQILEPISKLI 242

Query:   236 PXXXXXXXXXGT---VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM-LELLNLAS 291
                            + L+   SL +L  LDLS NS++   S R+  + P+ LE L L  
Sbjct:   243 NLKRLELSFLNISYPLDLNLFSSLKSLTYLDLSGNSIS-PRSLRSDLYIPLTLEKLLLEQ 301

Query:   292 CKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
             C + E PN LK   +L+Y+ +S N+I+ +IP W+WR+    L  ++L++N   GF+    
Sbjct:   302 CGIIEFPNILKTLQKLEYIDMSNNRINGKIPEWLWRLP--RLRSMSLANNSFNGFEGSTD 359

Query:   351 I---PALRFIDLISNQLRGNIHQLPNNPIYID-FSN--NNFTSSIPADTVNGT------L 398
             +    ++  + + SN ++G    LPN P+ I  FS   NNF+  IP    N +      L
Sbjct:   360 VLVNSSMEILFMHSNNIQG---ALPNLPLSIKAFSAGYNNFSGEIPLSICNRSSLAALSL 416

Query:   399 P-DTFPRN---CL--LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452
             P + F      CL  L  + L  N  +G++P ++     L+ L++G N  S   P SL +
Sbjct:   417 PYNNFTGKIPQCLSNLTFVHLRKNNLEGSIPDTLCAGDSLQTLDIGFNLISGTLPRSLLN 476

Query:   453 APITIKGLDIKLQKILNIF 471
                +++ L +   +I + F
Sbjct:   477 CS-SLEFLSVDNNRIKDTF 494

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 146/492 (29%), Positives = 228/492 (46%)

Query:    70 LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
             LDLS  S++G I  A  LF L  L  L L   +  GT +S  ++N+++L +L L      
Sbjct:   365 LDLSNNSLAGSIPEA--LFELVELTDLYLHNNTLEGT-LSPSISNLTNLQWLVLYHNNLE 421

Query:   130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
             G++P +IS + +L  L    N+FSG I      +  +L    +  N  +G IP S+    
Sbjct:   422 GKLPKEISALRKLEVLFLYENRFSGEIPQ-EIGNCTSLKMIDMFGNHFEGEIPPSIGRLK 480

Query:   190 MLQQLQLANNQFGGSIPR-FSNASSSAL----DTQIK-RVYSCLGLRTQKLTPXXXXXXX 243
              L  L L  N+  G +P    N     +    D Q+   + S  G   + L         
Sbjct:   481 ELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF-LKGLEQLMLYNNS 539

Query:   244 XXGTVQLDKILSLGNLAKLDLSYNSL--AVDESSRNYSFSPMLELLNLASCKLREIP-NL 300
               G +  D ++SL NL +++LS+N L   +     + S+    ++ N       EIP  L
Sbjct:   540 LQGNLP-DSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSF-DVTNNGFED--EIPLEL 595

Query:   301 KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI---PALRFI 357
              N   L  L L +NQ++ +IP  + ++  + L  L++S N L G   P  +     L  I
Sbjct:   596 GNSQNLDRLRLGKNQLTGKIPWTLGKIRELSL--LDMSSNALTG-TIPLQLVLCKKLTHI 652

Query:   358 DLISNQLRGNIHQLPNNPIYID---FSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414
             DL +N L G I         +     S+N F  S+P +  N T          L  L L+
Sbjct:   653 DLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTK---------LLVLSLD 703

Query:   415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFP------CSLYDAPIT---IKG-LDIKL 464
             GN   G++P+ I     L VLNL  NQFS   P        LY+  ++   + G + +++
Sbjct:   704 GNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEI 763

Query:   465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
              ++ ++ +++D S NNF G I   +G L  L  L+LSHN LTG +P S G++K L  L++
Sbjct:   764 GQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNV 823

Query:   525 SMNNLSRAIPSQ 536
             S NNL   +  Q
Sbjct:   824 SFNNLGGKLKKQ 835

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 3.1e-36, P = 3.1e-36
 Identities = 156/522 (29%), Positives = 244/522 (46%)

Query:    36 FDPSSSVKLMQWRQSTDCCDWSGVDCD-EAGHVIGLDLSTESISGGIENAAILF---SLH 91
             FD +  +K   W  ++DCC W G+ CD + G VI LDLS   + G + + + LF    L 
Sbjct:    53 FDSNIPLKTESWTNNSDCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLFRLPQLR 112

Query:    92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQ 151
             +L +L+L+   F G QI S L  +S+LT L+LS   F+G+IP  I  ++ L+ +DFS N 
Sbjct:   113 FLTTLDLSNNDFIG-QIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNN 171

Query:   152 FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR---- 207
             FSG I S    +L +L    LS N+  G +P S+     L  L+L+ N F G +P     
Sbjct:   172 FSGQIPS-SLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSLGS 230

Query:   208 FSNASSSALDTQ--IKRVYSCLGLRTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKLD-- 263
               + +   LDT   + ++ S LG     LT          G +      SLGNL+ L   
Sbjct:   231 LFHLTDLILDTNHFVGKIPSSLG-NLSHLTSIDLHKNNFVGEIPF----SLGNLSCLTSF 285

Query:   264 -LSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIP-NLKNQSQLQYLYLSENQISREI 320
              LS N++ V E   ++     L++LN+ S KL    P  L N  +L  L L  N+++  +
Sbjct:   286 ILSDNNI-VGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTL 344

Query:   321 PNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFIDLISNQLRG-----NIHQLPN 373
             P+ +  +S   L   + + N   G    + ++IP+L+ I L +NQL G     NI    N
Sbjct:   345 PSNMSSLS--NLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGSLGFGNISSYSN 402

Query:   374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKML 432
               + +   NNNF          G +  +  +   L+ LDL+    QG V  +I +  K +
Sbjct:   403 LTV-LRLGNNNF---------RGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSI 452

Query:   433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL 492
             E LNL +   +      +Y+   + K LD      L++  S   ST N        + L+
Sbjct:   453 EYLNLSH--LNTTTTIDMYEILSSFKLLDT-----LDLSGS-HVSTTNKSSLSNSSLVLI 504

Query:   493 KSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
               LY   LS   +T   P    + + + +LD+S N +   +P
Sbjct:   505 SQLY---LSGCGIT-EFPKFLRSQELMLTLDISNNKIKGQVP 542

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 1.0e-35, P = 1.0e-35
 Identities = 144/490 (29%), Positives = 241/490 (49%)

Query:    56 WSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANI 115
             W   +C+    ++ L L+  S+SG +   A + +L  ++++ L  +  +G  I  ++ N 
Sbjct:   211 WEIGNCES---LVTLGLAETSLSGRLP--ASIGNLKKVQTIALYTSLLSGP-IPDEIGNC 264

Query:   116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
             + L  L L     +G IPV + R+ +L +L    N   G I +        L    LS+N
Sbjct:   265 TELQNLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNLVGKIPT-ELGTCPELFLVDLSEN 323

Query:   176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR-FSNASSSA---LDT-QIK-RVYSCLGL 229
              L G+IPRS    P LQ+LQL+ NQ  G+IP   +N +      +D  QI   +   +G 
Sbjct:   324 LLTGNIPRSFGNLPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQISGEIPPLIGK 383

Query:   230 RTQKLTPXXXXXXXXXGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 289
              T  LT          G +  + +     L  +DLSYN+L+    +  +    + +LL L
Sbjct:   384 LTS-LTMFFAWQNQLTGIIP-ESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLL 441

Query:   290 ASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP 348
             ++     IP ++ N + L  L L+ N+++  IP  I  +    L+ +++S N L+G   P
Sbjct:   442 SNYLSGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLK--NLNFIDISENRLIGNIPP 499

Query:   349 Y--SIPALRFIDLISNQLRGNIH-QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
                   +L F+DL SN L G +   LP +  +ID S+N+ T S+P  T  G+L +     
Sbjct:   500 EISGCTSLEFVDLHSNGLTGGLPGTLPKSLQFIDLSDNSLTGSLP--TGIGSLTE----- 552

Query:   406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ 465
               L  L+L  NR  G +P+ I+ C+ L++LNLG+N F+ + P  L        G      
Sbjct:   553 --LTKLNLAKNRFSGEIPREISSCRSLQLLNLGDNGFTGEIPNEL--------G------ 596

Query:   466 KILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525
             +I ++  S++ S N+F G I      L +L  L++SHN L G++ +   +L+ L SL++S
Sbjct:   597 RIPSLAISLNLSCNHFTGEIPSRFSSLTNLGTLDVSHNKLAGNL-NVLADLQNLVSLNIS 655

Query:   526 MNNLSRAIPS 535
              N  S  +P+
Sbjct:   656 FNEFSGELPN 665

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2184058 AT5G10020 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 2.6e-35, P = 2.6e-35
 Identities = 152/508 (29%), Positives = 226/508 (44%)

Query:    55 DWSGVDCD-EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLA 113
             DW G+ CD E G +I ++L    +SG ++ +  L  L  LR+L+L+  SF+G  + S L 
Sbjct:    63 DWPGISCDPETGSIIAINLDRRGLSGELKFST-LSGLTRLRNLSLSGNSFSGRVVPS-LG 120

Query:   114 NISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS 173
              ISSL +L+LSD GF G IP +IS +  L  L+ S N+F G   S  + +L  L    L 
Sbjct:   121 GISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPS-GFRNLQQLRSLDLH 179

Query:   174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGG--SIPRFSNASSSALDTQIKRVYSCLGLRT 231
              N + G +     E   ++ + L+ N+F G  S+P   N SS      I      L L  
Sbjct:   180 KNEIWGDVGEIFTELKNVEFVDLSCNRFNGGLSLP-MENISS------ISNTLRHLNLSH 232

Query:   232 QKLTPXXXXXXXXXGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 291
               L                + I S  NL  +DL  N   ++    ++   P L +L LA 
Sbjct:   233 NALNGKFFSE---------ESIGSFKNLEIVDLENNQ--INGELPHFGSQPSLRILKLAR 281

Query:   292 CKLREIPNLKNQSQLQY-LYLSENQISRE-IPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
                 E+  L  Q  LQ  + L E  +SR      I  ++   L  LNLS N L G   P 
Sbjct:   282 ---NELFGLVPQELLQSSIPLLELDLSRNGFTGSISEINSSTLTMLNLSSNGLSG-DLPS 337

Query:   350 SIPALRFIDLISNQLRGNIHQLPN---NPIYIDFSNNNFTSSIPADT------------- 393
             S  +   IDL  N   G++  +      P  +D S+NN + S+P  T             
Sbjct:   338 SFKSCSVIDLSGNTFSGDVSVVQKWEATPDVLDLSSNNLSGSLPNFTSAFSRLSVLSIRN 397

Query:   394 --VNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLY 451
               V+G+LP  +  +     +DL+ N+  G +P S      L  LNL  N           
Sbjct:   398 NSVSGSLPSLWG-DSQFSVIDLSSNKFSGFIPVSFFTFASLRSLNLSRNNL--------- 447

Query:   452 DAPITIKGLDIKLQKILNIFTS---IDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS 508
             + PI  +G       +LN +     +D STN+  G +  D+G ++ +  LNL++N L+G 
Sbjct:   448 EGPIPFRGSRASELLVLNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGE 507

Query:   509 IPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
             +PS    L  L  LDLS N     IP++
Sbjct:   508 LPSDLNKLSGLLFLDLSNNTFKGQIPNK 535

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	558
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  172 bits (438), Expect = 8e-46
 Identities = 173/551 (31%), Positives = 245/551 (44%), Gaps = 102/551 (18%)

Query: 6   YFFAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAG 65
           +F  +N         +++  LLL  KSS+  DP     L  W  S D C W G+ C+ + 
Sbjct: 17  FFLFLN----FSMLHAEELELLLSFKSSIN-DPLKY--LSNWNSSADVCLWQGITCNNSS 69

Query: 66  HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD 125
            V+ +DLS ++ISG I  ++ +F L Y++++NL+    +G          SSL YLNLS+
Sbjct: 70  RVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 126 AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSM 185
             F G IP     +  L  LD S N  SG I +       +L    L  N L G IP S+
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 186 FEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245
                L+ L LA+NQ  G IPR                   LG + + L  + L  NNL+
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE------------------LG-QMKSLKWIYLGYNNLS 225

Query: 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQS 304
           G +  + I  L +L  LDL YN+L                           IP +L N  
Sbjct: 226 GEIPYE-IGGLTSLNHLDLVYNNLT------------------------GPIPSSLGNLK 260

Query: 305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQL 364
            LQYL+L +N++S  IP  I+  S+  L  L+LS N L G      IP L          
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSG-----EIPEL---------- 303

Query: 365 RGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK 424
              + QL N  I   FS NNFT  IP          + PR   LQ L L  N+  G +PK
Sbjct: 304 ---VIQLQNLEILHLFS-NNFTGKIPVALT------SLPR---LQVLQLWSNKFSGEIPK 350

Query: 425 SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP 484
           ++ K   L VL+L  N  + + P  L  +               N+F  I FS N+ +G 
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSG--------------NLFKLILFS-NSLEGE 395

Query: 485 ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLS 544
           I + +G  +SL  + L  N+ +G +PS F  L  +  LD+S NNL   I S+   +  L 
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 545 YLNLSYNQLEG 555
            L+L+ N+  G
Sbjct: 456 MLSLARNKFFG 466

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  134 bits (340), Expect = 3e-33
 Identities = 142/485 (29%), Positives = 201/485 (41%), Gaps = 119/485 (24%)

Query: 72  LSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQ 131
           L   ++SG I     +  L  L  L+L   +  G  I S L N+ +L YL L     +G 
Sbjct: 219 LGYNNLSGEIPYE--IGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 132 IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML 191
           IP  I  + +L++LD S N  SG I  +  + L NL    L  N+  G IP ++   P L
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRL 334

Query: 192 QQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLD 251
           Q LQL +N+F G IP+                   LG +   LT L LS+NNL G +  +
Sbjct: 335 QVLQLWSNKFSGEIPK------------------NLG-KHNNLTVLDLSTNNLTGEIP-E 374

Query: 252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQYLY 310
            + S GNL KL L  NSL                          EIP +L     L+ + 
Sbjct: 375 GLCSSGNLFKLILFSNSLE------------------------GEIPKSLGACRSLRRVR 410

Query: 311 LSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ 370
           L +N  S E+P+                      F     +P + F+D+ +N L+G I  
Sbjct: 411 LQDNSFSGELPS---------------------EFT---KLPLVYFLDISNNNLQGRI-- 444

Query: 371 LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK 430
                                ++    +P        LQ L L  N+  G +P S    K
Sbjct: 445 ---------------------NSRKWDMPS-------LQMLSLARNKFFGGLPDS-FGSK 475

Query: 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVG 490
            LE L+L  NQFS   P  L             L +++ +      S N   G I +++ 
Sbjct: 476 RLENLDLSRNQFSGAVPRKL-----------GSLSELMQL----KLSENKLSGEIPDELS 520

Query: 491 LLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSY 550
             K L  L+LSHN L+G IP+SF  +  L  LDLS N LS  IP  L ++  L  +N+S+
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580

Query: 551 NQLEG 555
           N L G
Sbjct: 581 NHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (260), Expect = 3e-23
 Identities = 106/330 (32%), Positives = 151/330 (45%), Gaps = 34/330 (10%)

Query: 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 292
           ++  + LS  N++G +    I  L  +  ++LS N L+       ++ S  L  LNL++ 
Sbjct: 70  RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 293 KLR-EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY-- 349
                IP   +   L+ L LS N +S EIPN I   S   L  L+L  N LVG       
Sbjct: 129 NFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFS--SLKVLDLGGNVLVGKIPNSLT 185

Query: 350 SIPALRFIDLISNQLRGNI-HQLPN--NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
           ++ +L F+ L SNQL G I  +L    +  +I    NN +  IP +   G L        
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI--GGLTS------ 237

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            L  LDL  N   G +P S+   K L+ L L  N+ S   P S++            LQK
Sbjct: 238 -LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-----------LQK 285

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
           ++    S+D S N+  G I E V  L++L  L+L  N  TG IP +  +L RL+ L L  
Sbjct: 286 LI----SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 527 NNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
           N  S  IP  L     L+ L+LS N L G 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.5 bits (248), Expect = 9e-22
 Identities = 89/289 (30%), Positives = 125/289 (43%), Gaps = 54/289 (18%)

Query: 310 YLSENQISREIPNW-------IWRVSVVGLHCLNLSHNF-LVGFQAPYSIPALRFIDLIS 361
           YLS    S ++  W         RV  + L   N+S       F+ PY    ++ I+L +
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPY----IQTINLSN 102

Query: 362 NQLRG----NIHQLPNNPIYIDFSNNNFTSSIPA-------------DTVNGTLPDTFPR 404
           NQL G    +I    ++  Y++ SNNNFT SIP              + ++G +P+    
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162

Query: 405 NCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLY------------- 451
              L+ LDL GN   G +P S+     LE L L +NQ   + P  L              
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 452 ----DAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG 507
               + P  I GL             +D   NN  GPI   +G LK+L  L L  N L+G
Sbjct: 223 NLSGEIPYEIGGL--------TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 508 SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
            IP S  +L++L SLDLS N+LS  IP  +  L  L  L+L  N   G+
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query: 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY 541
           +G I  D+  L+ L  +NLS N++ G+IP S G++  LE LDLS N+ + +IP  L  L 
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 542 FLSYLNLSYNQLEGR 556
            L  LNL+ N L GR
Sbjct: 491 SLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 473 SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA 532
           SI+ S N+ +G I   +G + SL  L+LS+N+  GSIP S G L  L  L+L+ N+LS  
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 533 IPSQLASL 540
           +P+ L   
Sbjct: 506 VPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKG 459
           D+      +  L L+    +G +P  I+K + L+ +NL  N      P SL     +I  
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG----SITS 467

Query: 460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514
           L             +D S N+F G I E +G L SL  LNL+ N+L+G +P++ G
Sbjct: 468 L-----------EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           +L  L+LS+N LT     +F  L  L+ LDLS NNL+   P   + L  L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 121 LNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS 180
           L L + G  G IP  IS++  L +++ S N   G+I       + +L    LS NS +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGS 481

Query: 181 IPRSMFEFPMLQQLQLANNQFGGSIP 206
           IP S+ +   L+ L L  N   G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 33/135 (24%)

Query: 56  WSGVDC---DEAGH--VIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISS 110
           WSG DC      G   + GL L  + + G I N   +  L +L+S+NL            
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND--ISKLRHLQSINL------------ 449

Query: 111 KLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170
                        S     G IP  +  +  L  LD S+N F+GSI     + L +L   
Sbjct: 450 -------------SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRIL 495

Query: 171 VLSDNSLDGSIPRSM 185
            L+ NSL G +P ++
Sbjct: 496 NLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 497 GLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           GL L +  L G IP+    L+ L+S++LS N++   IP  L S+  L  L+LSYN   G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 27 LLQLKSSLTFDPSSSVKLMQWRQS-TDCCDWSGVDCD 62
          LL  KSSL  DPS +  L  W  S +D C W+GV CD
Sbjct: 8  LLAFKSSLNGDPSGA--LSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 23/110 (20%)

Query: 356 FIDLIS--NQ-LRGNI-------HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
           FID +   NQ LRG I         L +    I+ S N+   +IP     G++       
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQS----INLSGNSIRGNIPPSL--GSITS----- 467

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455
             L+ LDL+ N   G++P+S+ +   L +LNL  N  S + P +L    +
Sbjct: 468 --LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 71/210 (33%), Positives = 98/210 (46%), Gaps = 25/210 (11%)

Query: 354 LRFIDLISNQLRGNIHQLPN--NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTL 411
           L  +DL  N+LR NI +L    N   +D  NNN T   P       L      N  L+ L
Sbjct: 95  LPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-------LIGLLKSN--LKEL 145

Query: 412 DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471
           DL+ N+ + ++P  +     L+ L+L  N  SD     L      +  LD+   KI ++ 
Sbjct: 146 DLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPK--LLSNLSNLNNLDLSGNKISDLP 202

Query: 472 TSIDFST--------NNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLD 523
             I+  +        NN    +L  +  LK+L GL LS+N L   +P S GNL  LE+LD
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261

Query: 524 LSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           LS N +S    S L SL  L  L+LS N L
Sbjct: 262 LSNNQISS--ISSLGSLTNLRELDLSGNSL 289

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            L +LDLN NR +      + +   L  L+L NN  +D  P  +      +K LD+   K
Sbjct: 94  PLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNK 151

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
           I ++ + +                 L +L  L+LS N L+  +P    NL  L +LDLS 
Sbjct: 152 IESLPSPL---------------RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG 195

Query: 527 NNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           N +S  +P ++  L  L  L+LS N + 
Sbjct: 196 NKISD-LPPEIELLSALEELDLSNNSII 222

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317
             LE L+L++ ++ ++P L N   L+ L LS N+I+
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 38/185 (20%)

Query: 303 QSQLQYLYLSENQISR---EIPNWIWRVSV-------------VGLHCLNLSHNFLVGFQ 346
           Q  ++ LY + NQ++     +P+ I  + +               L  L+L HN +    
Sbjct: 219 QGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCL- 277

Query: 347 APYSIP-ALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
            P ++P  LR++ +  N +R     LP+   +++  +N+ T+          LP+T P  
Sbjct: 278 -PENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA----------LPETLPPG 326

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ 465
             L+TL+   N    ++P S+     L+VL++  NQ +   P +L   P TI  LD+   
Sbjct: 327 --LKTLEAGEN-ALTSLPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRN 377

Query: 466 KILNI 470
            + N+
Sbjct: 378 ALTNL 382

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	558
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
PLN03150	623	hypothetical protein; Provisional	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
KOG4341	483	consensus F-box protein containing LRR [General fu	98.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.02
PRK15386	426	type III secretion protein GogB; Provisional	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
KOG4341	483	consensus F-box protein containing LRR [General fu	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.88
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.7
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.85
KOG4308	478	consensus LRR-containing protein [Function unknown	93.67
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.35
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.04
KOG4308	478	consensus LRR-containing protein [Function unknown	88.32
smart00370	26	LRR Leucine-rich repeats, outliers.	86.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.68
smart00370	26	LRR Leucine-rich repeats, outliers.	85.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.51
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	84.56

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-59  Score=525.83  Aligned_cols=527  Identities=31%  Similarity=0.446  Sum_probs=372.0

Q ss_pred             hhcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCC
Q 048194           14 FVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYL   93 (558)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L   93 (558)
                      ...+..+++|++||++||+.+.++..   ...+|+...+||.|.|+.|+..++|+.|+++++.+.+..+.  .+..+++|
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~--~~~~l~~L   95 (968)
T PLN00113         21 LNFSMLHAEELELLLSFKSSINDPLK---YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS--AIFRLPYI   95 (968)
T ss_pred             HHccCCCHHHHHHHHHHHHhCCCCcc---cCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh--HHhCCCCC
Confidence            33334477899999999999964433   67899888899999999998778999999999999988877  79999999


Q ss_pred             CEEECCCCCCCCCccchhh-cCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEc
Q 048194           94 RSLNLARTSFNGTQISSKL-ANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL  172 (558)
Q Consensus        94 ~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  172 (558)
                      ++|+|++|.+.+. +|..+ ..+++|++|++++|.+++.+|.  +.+++|++|++++|.+.+.+|. .++++++|++|++
T Consensus        96 ~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L  171 (968)
T PLN00113         96 QTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDL  171 (968)
T ss_pred             CEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEEC
Confidence            9999999999876 77655 4899999999999998877775  4578888888888888866665 5788888888888


Q ss_pred             cCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh----------hchhhhcccCCCCCCCEEEcccc
Q 048194          173 SDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ----------IKRVYSCLGLRTQKLTPLLLSSN  242 (558)
Q Consensus       173 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l----------i~~~~~~~~~~~~~L~~L~l~~n  242 (558)
                      ++|.+.+.+|..+.++++|++|++++|.+.+.+|..+ ..+..|+.+          +|..+    ..+++|++|++++|
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n  246 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEI----GGLTSLNHLDLVYN  246 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhH----hcCCCCCEEECcCc
Confidence            8888887888888888888888888888887777665 222333322          33334    55566666666666


Q ss_pred             cCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccC
Q 048194          243 NLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREI  320 (558)
Q Consensus       243 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~  320 (558)
                      .+.+.+| ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++ .+|. +..+++|++|++++|.+.+..
T Consensus       247 ~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        247 NLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             eeccccC-hhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence            6654444 34556666666666666665554444 555566666666666555 4444 555666666666666666556


Q ss_pred             ChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCC---CCCCcEEEccCCcccccCCCC---
Q 048194          321 PNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQL---PNNPIYIDFSNNNFTSSIPAD---  392 (558)
Q Consensus       321 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~---  392 (558)
                      |..+..++.  |+.|++++|.+.+..+.  ..+++|+.|++++|++.+.+|..   ..+++.+++++|.+.+.+|..   
T Consensus       325 ~~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        325 PVALTSLPR--LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             ChhHhcCCC--CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence            655555544  66666666666544333  22556666666666665555432   234555555555555433321   


Q ss_pred             ------------CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc---eeec
Q 048194          393 ------------TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA---PITI  457 (558)
Q Consensus       393 ------------~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~---~~~~  457 (558)
                                  .+.+.+|..+..++.|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+...   .+.+
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l  482 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL  482 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence                        1223455555555666666666666665555555566666666666666666555543210   1111


Q ss_pred             -----cccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194          458 -----KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA  532 (558)
Q Consensus       458 -----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  532 (558)
                           .+.....+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|||++|++++.
T Consensus       483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  562 (968)
T PLN00113        483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE  562 (968)
T ss_pred             cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence                 111223345678899999999999988999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          533 IPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       533 ~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                      +|..+.++++|+++++++|+++|.+|
T Consensus       563 ~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        563 IPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999887

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-47  Score=431.57  Aligned_cols=456  Identities=30%  Similarity=0.418  Sum_probs=332.5

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .+++.|++++|++++..|.    ..+++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~----~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPR----GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             CCCCEEECcCCccccccCc----cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            5788899999888776654    4577888888888888776 7888888888888888888888788888888888888


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh-----
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ-----  219 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l-----  219 (558)
                      |++++|.+.+.+|. .++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ ..+..|+.+     
T Consensus       193 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n  270 (968)
T PLN00113        193 LTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQN  270 (968)
T ss_pred             eeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCC
Confidence            88888888766665 57888888888888888887888888888888888888888877777655 233334333     


Q ss_pred             -----hchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCC
Q 048194          220 -----IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL  294 (558)
Q Consensus       220 -----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  294 (558)
                           +|..+    ..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+
T Consensus       271 ~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        271 KLSGPIPPSI----FSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             eeeccCchhH----hhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCC
Confidence                 33444    566777777777777765555 45667777777777777777666555 66777777777777777


Q ss_pred             C-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCC
Q 048194          295 R-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQ  370 (558)
Q Consensus       295 ~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~  370 (558)
                      + .+|. +..+++|+.|++++|++.+.+|.++.....  ++.|++++|.+.+..+.  ..+++|+.|++++|.+++.+|.
T Consensus       345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~--L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN--LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC--CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence            6 5665 677777777777777777777776665544  67777777766655443  2366777777777777666554


Q ss_pred             C---CCCCcEEEccCCcccccCCCC---------------CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCC
Q 048194          371 L---PNNPIYIDFSNNNFTSSIPAD---------------TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML  432 (558)
Q Consensus       371 ~---~~~l~~l~l~~n~~~~~~~~~---------------~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  432 (558)
                      .   +++++.+++++|.+++.++..               .+.+.+|..+ ...+|+.|++++|++.+.+|..+..+++|
T Consensus       423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  501 (968)
T PLN00113        423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL  501 (968)
T ss_pred             hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence            3   345666777766666443321               1112333332 23556666666666666666666666666


Q ss_pred             CEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccc
Q 048194          433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS  512 (558)
Q Consensus       433 ~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  512 (558)
                      +.|++++|.+.+.+|..+.               .+++|++|++++|.+++.+|..++.+++|+.|++++|++++.+|..
T Consensus       502 ~~L~Ls~N~l~~~~p~~~~---------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        502 MQLKLSENKLSGEIPDELS---------------SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             CEEECcCCcceeeCChHHc---------------CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            7777777766666665543               4899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194          513 FGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ  552 (558)
Q Consensus       513 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~  552 (558)
                      +.+++.|+.|++++|++.+.+|.. ..+..+......+|+
T Consensus       567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            999999999999999999988854 333444445555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-38  Score=304.00  Aligned_cols=366  Identities=22%  Similarity=0.245  Sum_probs=309.5

Q ss_pred             CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEE
Q 048194           92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAV  171 (558)
Q Consensus        92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  171 (558)
                      .-+.|++++|.+... -+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++.+..++.++.|+.||
T Consensus        79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            567899999999988 7888999999999999999999 88987777788999999999999 66444789999999999


Q ss_pred             ccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChh
Q 048194          172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLD  251 (558)
Q Consensus       172 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  251 (558)
                      |+.|.++..--..+..-.++++|+|++|+|+..-...|                   ..+.+|..|.|+.|+++ .+|..
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-------------------~~lnsL~tlkLsrNrit-tLp~r  215 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-------------------DSLNSLLTLKLSRNRIT-TLPQR  215 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccc-------------------cccchheeeecccCccc-ccCHH
Confidence            99999985444556666889999999999997666555                   77889999999999998 89999


Q ss_pred             hhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhcc
Q 048194          252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSV  329 (558)
Q Consensus       252 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  329 (558)
                      .|+.+++|+.|++..|++.-..... |..+++|+.|.+..|++..+.+  |..+.++++|+++.|++...-..|+.++..
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             Hhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence            9999999999999999997544444 8899999999999999999988  899999999999999998877788888887


Q ss_pred             ccceEEEcCCccccccCCC-CC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194          330 VGLHCLNLSHNFLVGFQAP-YS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL  407 (558)
Q Consensus       330 ~~L~~L~ls~n~l~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~  407 (558)
                        |+.|++|+|.|+.+... +. +++|++|+|++|+++.                              --+..|..+..
T Consensus       295 --L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~------------------------------l~~~sf~~L~~  342 (873)
T KOG4194|consen  295 --LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR------------------------------LDEGSFRVLSQ  342 (873)
T ss_pred             --hhhhccchhhhheeecchhhhcccceeEecccccccc------------------------------CChhHHHHHHH
Confidence              99999999999887766 33 8888888888888762                              22345666778


Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      |+.|+|+.|.+....-..|..+++|++|||++|.++..+-+.            ...+..+++|+.|+|.+|++..+.-.
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa------------a~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA------------AVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc------------hhhhccchhhhheeecCceeeecchh
Confidence            889999999888665667788899999999999887543331            22334488899999999999887778


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCC
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM  526 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  526 (558)
                      .|.+++.|+.|+|.+|.|....|.+|..| .|++|-++.
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            89999999999999999988888999888 888887654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-37  Score=294.46  Aligned_cols=361  Identities=24%  Similarity=0.263  Sum_probs=281.8

Q ss_pred             CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcC-CCCccEEEccCCccCccCCccccCCCCCCEEe
Q 048194          117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEH-LLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQ  195 (558)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  195 (558)
                      .-+.|++++|++...-+..|.++++|+.+++.+|.++ .+|.  ++. ..+|+.|+|.+|.|+..-.+++..++.|+.||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            4567999999999888888999999999999999998 7875  444 45599999999999877788888999999999


Q ss_pred             CccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCC
Q 048194          196 LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESS  275 (558)
Q Consensus       196 l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  275 (558)
                      |+.|.++...-..+                   ..-.++++|+|++|.++ .+....|..+.+|..|.++.|+++...+.
T Consensus       156 LSrN~is~i~~~sf-------------------p~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r  215 (873)
T KOG4194|consen  156 LSRNLISEIPKPSF-------------------PAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQR  215 (873)
T ss_pred             hhhchhhcccCCCC-------------------CCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHH
Confidence            99999874433333                   44467888888888887 66667788888888888888888754444


Q ss_pred             cccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCC
Q 048194          276 RNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSI  351 (558)
Q Consensus       276 ~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~  351 (558)
                      . |..+++|+.|++..|++..+..  |..+++|+.|.+..|.+...-...|..+..  +++|+|..|+++.+...  .++
T Consensus       216 ~-Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k--me~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  216 S-FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK--MEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             H-hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc--cceeecccchhhhhhccccccc
Confidence            4 7788888888888888775544  778888888888888876555556666666  88888888887766554  446


Q ss_pred             CccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCC
Q 048194          352 PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKM  431 (558)
Q Consensus       352 ~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  431 (558)
                      .+|+.|++++|.|..                              .-++.|.-+++|+.|+|++|+++...+..|..+..
T Consensus       293 t~L~~L~lS~NaI~r------------------------------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~  342 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQR------------------------------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ  342 (873)
T ss_pred             chhhhhccchhhhhe------------------------------eecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence            777777777776652                              23456777788999999999999888888888999


Q ss_pred             CCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC---chhhcccCCCCeeeCcCCcCccc
Q 048194          432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI---LEDVGLLKSLYGLNLSHNALTGS  508 (558)
Q Consensus       432 L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~  508 (558)
                      |++|+|+.|++...--               ..+..+++|++|||++|.+...+   ...|.++++|+.|.+.+|++...
T Consensus       343 Le~LnLs~Nsi~~l~e---------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAE---------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             hhhhcccccchHHHHh---------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence            9999999998863221               22345889999999999887543   34577799999999999999844


Q ss_pred             ccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCc
Q 048194          509 IPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS  549 (558)
Q Consensus       509 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  549 (558)
                      .-.+|..+.+|+.|||.+|.+..+-|+.|..+ .|+.|-+.
T Consensus       408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            44678999999999999999988888888887 78777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.4e-39  Score=297.46  Aligned_cols=421  Identities=27%  Similarity=0.364  Sum_probs=303.7

Q ss_pred             EEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEe
Q 048194           67 VIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD  146 (558)
Q Consensus        67 v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  146 (558)
                      ++.+.++.|.+....+   .+..+..|.+|+++.|.+..  +|.+++.+..++.++.++|++. .+|+.++.+..|+.++
T Consensus        47 l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            4566777777654333   36777778888888887766  6777788888888888888877 7777788888888888


Q ss_pred             cccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhc
Q 048194          147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSC  226 (558)
Q Consensus       147 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~  226 (558)
                      .++|.+. .+++ .++.+..++.++..+|++. .+|+.++.+.+|..+++.+|++....|..                  
T Consensus       121 ~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~------------------  179 (565)
T KOG0472|consen  121 CSSNELK-ELPD-SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH------------------  179 (565)
T ss_pred             cccccee-ecCc-hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHH------------------
Confidence            8888877 4433 4677778888888888877 67777777888888888888877554443                  


Q ss_pred             ccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCC
Q 048194          227 LGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQS  304 (558)
Q Consensus       227 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~  304 (558)
                        -.++.|++|+...|.+. .+| ..++.+.+|+.|++..|++... | . |..+..|+++++..|++..+|.  ..+++
T Consensus       180 --i~m~~L~~ld~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~~l-P-e-f~gcs~L~Elh~g~N~i~~lpae~~~~L~  252 (565)
T KOG0472|consen  180 --IAMKRLKHLDCNSNLLE-TLP-PELGGLESLELLYLRRNKIRFL-P-E-FPGCSLLKELHVGENQIEMLPAEHLKHLN  252 (565)
T ss_pred             --HHHHHHHhcccchhhhh-cCC-hhhcchhhhHHHHhhhcccccC-C-C-CCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence              33667777777777665 666 3467777777777777777633 2 3 6677777777777777777776  56777


Q ss_pred             CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcc---cCC-----------
Q 048194          305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRG---NIH-----------  369 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~---~~~-----------  369 (558)
                      ++..||+.+|++. +.|+.++.+..  |++||+|+|.+++.+...+ + .|+.|-+.+|.+..   .+-           
T Consensus       253 ~l~vLDLRdNklk-e~Pde~clLrs--L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  253 SLLVLDLRDNKLK-EVPDEICLLRS--LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             cceeeeccccccc-cCchHHHHhhh--hhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            7777777777774 67777766665  7777777777777777655 5 77777777775531   000           


Q ss_pred             -----------------------C-C------CCC--------------------------CcEEEccCCcccccCCCCC
Q 048194          370 -----------------------Q-L------PNN--------------------------PIYIDFSNNNFTSSIPADT  393 (558)
Q Consensus       370 -----------------------~-~------~~~--------------------------l~~l~l~~n~~~~~~~~~~  393 (558)
                                             . .      .-+                          ++..+++.|.+.       
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-------  401 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-------  401 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-------
Confidence                                   0 0      001                          334444444444       


Q ss_pred             ccCCCCCCCCCCCCCCE-EECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccce
Q 048194          394 VNGTLPDTFPRNCLLQT-LDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFT  472 (558)
Q Consensus       394 ~~~~~p~~~~~~~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~  472 (558)
                         ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|...+.               +..|+
T Consensus       402 ---elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~---------------lv~Lq  461 (565)
T KOG0472|consen  402 ---ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS---------------LVRLQ  461 (565)
T ss_pred             ---hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh---------------hhhhh
Confidence               45555444433333 34444444 377778888999999999998875 56665543               77799


Q ss_pred             EEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194          473 SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ  552 (558)
Q Consensus       473 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~  552 (558)
                      +||++.|++. ..|..+..+.-|+.+-.++|++....|..+.+|.+|..|||.+|.+. .+|..+++|++|+.|++.||+
T Consensus       462 ~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  462 TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence            9999999887 57777777778888888889998767777999999999999999997 789999999999999999999


Q ss_pred             Ce
Q 048194          553 LE  554 (558)
Q Consensus       553 l~  554 (558)
                      |.
T Consensus       540 fr  541 (565)
T KOG0472|consen  540 FR  541 (565)
T ss_pred             cC
Confidence            87

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.98  E-value=2.9e-36  Score=278.13  Aligned_cols=416  Identities=23%  Similarity=0.329  Sum_probs=302.6

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      ..++.++++.++++. .|+  +++.+..++.++.+.|++..  +|..+..+.+|+.++.++|.+. .+|+.++.+..|+.
T Consensus        68 ~~l~vl~~~~n~l~~-lp~--aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQ-LPA--AIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED  141 (565)
T ss_pred             cceeEEEeccchhhh-CCH--HHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence            457889999988874 444  58888888888888888876  7888888888888888888887 77777888888888


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh-----
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ-----  219 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l-----  219 (558)
                      ++..+|+++ ..|. ++..+.++..+++.+|++. .+|....+++.|++||...|-++ .+|+.+ +....++.+     
T Consensus       142 l~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  142 LDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRN  216 (565)
T ss_pred             hhccccccc-cCch-HHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhc
Confidence            888888877 4433 3555555666666666555 23333333555555555555444 333322 112222211     


Q ss_pred             ----hchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC
Q 048194          220 ----IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR  295 (558)
Q Consensus       220 ----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  295 (558)
                          .| .|    .++..|++++++.|++. .+|.+..+++.++..||++.|+++. .|.. +..+.+|++||+++|.++
T Consensus       217 ki~~lP-ef----~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde-~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  217 KIRFLP-EF----PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDE-ICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             ccccCC-CC----CccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchH-HHHhhhhhhhcccCCccc
Confidence                22 22    77788888888888886 7787778889999999999999874 4444 667788999999999999


Q ss_pred             CCCC-CCCCCCCCEEecCCCcccccCChhHHh----------------------------------------hccccceE
Q 048194          296 EIPN-LKNQSQLQYLYLSENQISREIPNWIWR----------------------------------------VSVVGLHC  334 (558)
Q Consensus       296 ~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------~~~~~L~~  334 (558)
                      .+|. ++++ .|+.|-+.+|++.. +-..+-.                                        ....+.++
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence            9988 8888 89999999988631 1100000                                        00123566


Q ss_pred             EEcCCccccccCCC-CC---CCccCEEEcccccCcccCCCCCC----CCcEEEccCCcccccCCCCCccCCCCCCCCCCC
Q 048194          335 LNLSHNFLVGFQAP-YS---IPALRFIDLISNQLRGNIHQLPN----NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC  406 (558)
Q Consensus       335 L~ls~n~l~~~~~~-~~---~~~L~~L~l~~n~~~~~~~~~~~----~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~  406 (558)
                      |++++-+++.++.. +.   -.-.+.++++.|++. ++|..+.    -++.+.+++|.++          -+|..+..++
T Consensus       367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is----------fv~~~l~~l~  435 (565)
T KOG0472|consen  367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS----------FVPLELSQLQ  435 (565)
T ss_pred             hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc----------cchHHHHhhh
Confidence            77777777666544 11   223667888888776 3333322    2455677777776          6777888999


Q ss_pred             CCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194          407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL  486 (558)
Q Consensus       407 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  486 (558)
                      +|..|++++|.+. .+|..++.+..|+.|+++.|++. ..|..+|.               +..++.+-.+.|++....+
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~---------------lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE---------------LQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh---------------HHHHHHHHhccccccccCh
Confidence            9999999999987 88999999999999999999986 67777665               6667777777799987777


Q ss_pred             hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194          487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  530 (558)
                      ..+.+|.+|..|++.+|.+. .+|..+++|++|++|++.+|.+.
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            78999999999999999998 89999999999999999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=8.4e-35  Score=282.21  Aligned_cols=362  Identities=26%  Similarity=0.313  Sum_probs=210.4

Q ss_pred             CCEEEEEcCCCCccc-cccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCc
Q 048194           65 GHVIGLDLSTESISG-GIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLV  143 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  143 (558)
                      +-|+.+|+++|.+.| ..|.  .+..+++++.|.|....+..  +|+.++.+.+|++|.+++|++. .+-..++.++.|+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            456677777777763 4444  56677777777776666654  5677777777777777777766 4555566677777


Q ss_pred             EEecccccccccc-cchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194          144 ALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR  222 (558)
Q Consensus       144 ~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~  222 (558)
                      .+++..|++.... |. .+.++..|+.|+|++|++. ..|..+..-+++-.|++++|+|. ++|..+.            
T Consensus        82 sv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lf------------  146 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLF------------  146 (1255)
T ss_pred             HHhhhccccccCCCCc-hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHH------------
Confidence            7777777665444 43 5666777777777777766 56666666667777777777766 3443221            


Q ss_pred             hhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--CCCC-
Q 048194          223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPN-  299 (558)
Q Consensus       223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~-  299 (558)
                            .+++.|-.|||++|++. .+|+ .+..+.+|++|++++|.+.-..... +..++.|+.|.+++.+-+  .+|. 
T Consensus       147 ------inLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  147 ------INLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             ------HhhHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCc
Confidence                  45566666677777665 4453 3555666666666666554211111 334455555666665444  5555 


Q ss_pred             CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCCCCCCCcEE
Q 048194          300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYI  378 (558)
Q Consensus       300 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l  378 (558)
                      +..+.+|..+|++.|.+. .+|+.+..+..  |+.|+||+|.++......+ +.+|+.|+++.|+++             
T Consensus       218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~--LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------------  281 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP-IVPECLYKLRN--LRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------------  281 (1255)
T ss_pred             hhhhhhhhhccccccCCC-cchHHHhhhhh--hheeccCcCceeeeeccHHHHhhhhhhccccchhc-------------
Confidence            555666666666666653 55555555444  5555555555554333222 333333333333332             


Q ss_pred             EccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCc-cCCcccccCCCCCEEECCCCcCcccCCccccCceeec
Q 048194          379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITI  457 (558)
Q Consensus       379 ~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~  457 (558)
                                        .+|..+..++.|+.|++.+|+++- -+|..++.+..|++                       
T Consensus       282 ------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev-----------------------  320 (1255)
T KOG0444|consen  282 ------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV-----------------------  320 (1255)
T ss_pred             ------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH-----------------------
Confidence                              344444444455555555554432 13444444444444                       


Q ss_pred             cccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194          458 KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       458 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  530 (558)
                                      +..++|.+. .+|.++..|+.|+.|.|++|++. .+|++|.-++-|+.||+..|.-.
T Consensus       321 ----------------f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  321 ----------------FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ----------------HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                            444444444 45666666777777777777666 56777777777777777776543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=9.5e-35  Score=281.85  Aligned_cols=365  Identities=27%  Similarity=0.385  Sum_probs=263.1

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL  167 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  167 (558)
                      +-++..|-.|+++|.+++..+|..+..+.+++.|.|.+.++. .+|..++.+.+|++|.+++|++. .+.. .++.++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhh
Confidence            456678889999999997779999999999999999999998 89999999999999999999988 4422 47888889


Q ss_pred             cEEEccCCccC-ccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc
Q 048194          168 VCAVLSDNSLD-GSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG  246 (558)
Q Consensus       168 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~  246 (558)
                      +.+.+.+|++. ..+|..+..+..|..||+++|++. ..|..+                   ...+++-.|+|++|++. 
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-------------------E~AKn~iVLNLS~N~Ie-  139 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-------------------EYAKNSIVLNLSYNNIE-  139 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-------------------hhhcCcEEEEcccCccc-
Confidence            99988888875 347888888888888888888887 556544                   66677778888888886 


Q ss_pred             ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--CCCCCCCCCCCCEEecCCCccc-ccCChh
Q 048194          247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPNLKNQSQLQYLYLSENQIS-REIPNW  323 (558)
Q Consensus       247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~~~~~~L~~L~l~~n~l~-~~~~~~  323 (558)
                      .+|...+.+++.|-.||+++|++....| . ...+.+|++|.+++|.+.  .+..+..+++|++|.+++.+-+ .-+|..
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLEMLPP-Q-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhhhcCH-H-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence            7777777777777777777777764333 2 556667777777777655  2223455666667777665532 235555


Q ss_pred             HHhhccccceEEEcCCccccccCCC-CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCC
Q 048194          324 IWRVSVVGLHCLNLSHNFLVGFQAP-YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF  402 (558)
Q Consensus       324 ~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~  402 (558)
                      +..+..  |..+|+|.|.+..++.. ..+++|+.|++++|+++                               ++....
T Consensus       218 ld~l~N--L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-------------------------------eL~~~~  264 (1255)
T KOG0444|consen  218 LDDLHN--LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-------------------------------ELNMTE  264 (1255)
T ss_pred             hhhhhh--hhhccccccCCCcchHHHhhhhhhheeccCcCcee-------------------------------eeeccH
Confidence            555554  55555555555544433 22444444444444443                               111122


Q ss_pred             CCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccc
Q 048194          403 PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFK  482 (558)
Q Consensus       403 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  482 (558)
                      +.-.+|++|++|.|+++ .+|+.+..+++|+.|.+.+|+++                                     +.
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~-------------------------------------Fe  306 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT-------------------------------------FE  306 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc-------------------------------------cc
Confidence            22234555555555555 45555555555555555555443                                     12


Q ss_pred             ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194          483 GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ  552 (558)
Q Consensus       483 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~  552 (558)
                       -+|..++.+.+|+.+..++|.+. ..|+++..+.+|+.|.|+.|++. .+|+.+--++.|+.||++.|+
T Consensus       307 -GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  307 -GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             -CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence             26889999999999999999998 89999999999999999999997 799999999999999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-33  Score=284.94  Aligned_cols=416  Identities=28%  Similarity=0.353  Sum_probs=302.3

Q ss_pred             CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194           66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL  145 (558)
Q Consensus        66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  145 (558)
                      ++.+||++++.+. ..|.  .+..+++|+.|+++.|.+..  .|....++.+|+++.|.+|.+. .+|..+..+.+|++|
T Consensus        46 ~L~~l~lsnn~~~-~fp~--~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L  119 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPI--QITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL  119 (1081)
T ss_pred             eeEEeeccccccc-cCCc--hhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence            3788888888765 4444  57788888888888888766  5777888888888888888887 788888888888888


Q ss_pred             ecccccccccccchhhcCCCCccEEEccCC-------------------ccCccCCccccCCCCCCEEeCccccCCCCCC
Q 048194          146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDN-------------------SLDGSIPRSMFEFPMLQQLQLANNQFGGSIP  206 (558)
Q Consensus       146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-------------------~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  206 (558)
                      ++++|.+. .+|. .+..+..++.+..++|                   .+.+.++..+..+..  .|++++|.+. ...
T Consensus       120 dlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d  194 (1081)
T KOG0618|consen  120 DLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD  194 (1081)
T ss_pred             ccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh
Confidence            88888887 5544 2444444444444444                   444444444443333  4555555443 111


Q ss_pred             ccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCE
Q 048194          207 RFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL  286 (558)
Q Consensus       207 ~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  286 (558)
                      .                     ..+.+|+.|....|++. .+    .-.-++|+.|+..+|.++....   .....+|++
T Consensus       195 l---------------------s~~~~l~~l~c~rn~ls-~l----~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~  245 (1081)
T KOG0618|consen  195 L---------------------SNLANLEVLHCERNQLS-EL----EISGPSLTALYADHNPLTTLDV---HPVPLNLQY  245 (1081)
T ss_pred             h---------------------hhccchhhhhhhhcccc-eE----EecCcchheeeeccCcceeecc---cccccccee
Confidence            0                     44555666666655554 11    1234567777777777763222   223557888


Q ss_pred             EecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccC
Q 048194          287 LNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQL  364 (558)
Q Consensus       287 L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~  364 (558)
                      ++++.++++.+|+ +..+.+|+.++..+|.++ .+|..+.....  |+.|....|.+..+++... ...|+.|++..|++
T Consensus       246 ~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~--L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  246 LDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITS--LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             eecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhh--HHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            8899888888888 888888999999888884 67777777776  8888888899888888755 88899999998887


Q ss_pred             cccCCCCC----CCCcEEEccCCcccccCCCCCccCCCCCC-CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCC
Q 048194          365 RGNIHQLP----NNPIYIDFSNNNFTSSIPADTVNGTLPDT-FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGN  439 (558)
Q Consensus       365 ~~~~~~~~----~~l~~l~l~~n~~~~~~~~~~~~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  439 (558)
                      .......+    .++..++.+.|++.          ..|.. -..++.|+.|++.+|.+++.....+.+.+.|++|+|++
T Consensus       323 ~~lp~~~l~v~~~~l~~ln~s~n~l~----------~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  323 PSLPDNFLAVLNASLNTLNVSSNKLS----------TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY  392 (1081)
T ss_pred             cccchHHHhhhhHHHHHHhhhhcccc----------ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence            64333221    23566666777665          33321 12356799999999999988777889999999999999


Q ss_pred             CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCC
Q 048194          440 NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL  519 (558)
Q Consensus       440 n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  519 (558)
                      |++. .+|.              ....++..|++|+||+|.++ .+|..+..++.|++|...+|++. ..| ++..++.|
T Consensus       393 NrL~-~fpa--------------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  393 NRLN-SFPA--------------SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             cccc-cCCH--------------HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            9986 4443              34456899999999999999 47799999999999999999998 678 78999999


Q ss_pred             CeecCCCCcCcccchhhhcCCCCCCEEeCcCCc
Q 048194          520 ESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ  552 (558)
Q Consensus       520 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~  552 (558)
                      +.+|++.|+++......-...++|++||++||.
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            999999999975433323333899999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=6.2e-32  Score=273.91  Aligned_cols=436  Identities=26%  Similarity=0.286  Sum_probs=281.3

Q ss_pred             CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194           66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL  145 (558)
Q Consensus        66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  145 (558)
                      .++.|+++.|.+....-+  .+.+.-.|+.|++++|.+..  +|..+..+++|+.|+++.|.+. ..|....++.+|++|
T Consensus        22 ~~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL   96 (1081)
T ss_pred             HHHhhhccccccccCchH--HhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence            477788887765432222  34445559999999998877  7888889999999999999998 788888999999999


Q ss_pred             ecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccc----cccccchhhhhc
Q 048194          146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFS----NASSSALDTQIK  221 (558)
Q Consensus       146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~~~~l~~li~  221 (558)
                      .|.+|++. ..|. .++.+++|++|++++|.+. .+|..+..+..+..+..++|.....++...    ......+...++
T Consensus        97 nL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~  173 (1081)
T KOG0618|consen   97 NLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL  173 (1081)
T ss_pred             eeccchhh-cCch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh
Confidence            99999988 6665 6889999999999999987 788888888888888888882221222110    000000000011


Q ss_pred             hhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCC
Q 048194          222 RVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLK  301 (558)
Q Consensus       222 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~  301 (558)
                      ..+    ..++.  .|++++|.+. .   ..+..+.+|+.+....|++....     ...++++.|+.+.|.++.+-.-.
T Consensus       174 ~~i----~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~~p  238 (1081)
T KOG0618|consen  174 IDI----YNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDVHP  238 (1081)
T ss_pred             cch----hhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeecccc
Confidence            111    11111  2555555443 1   12344455555555555443221     12345666666666655333334


Q ss_pred             CCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCC--CCCCCcEE
Q 048194          302 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQ--LPNNPIYI  378 (558)
Q Consensus       302 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~--~~~~l~~l  378 (558)
                      ...+|+++++++|++. .+|.|+..+..  ++.++..+|.++..+.... ..+|+.+.+..|.+.-..+.  ...++++|
T Consensus       239 ~p~nl~~~dis~n~l~-~lp~wi~~~~n--le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS-NLPEWIGACAN--LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccccceeeecchhhhh-cchHHHHhccc--ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence            4556667777777665 44566666555  6666666666655554432 55666666666665532221  13355555


Q ss_pred             EccCCcccccCCCCCccCCCCCCCCC-C-CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceee
Q 048194          379 DFSNNNFTSSIPADTVNGTLPDTFPR-N-CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT  456 (558)
Q Consensus       379 ~l~~n~~~~~~~~~~~~~~~p~~~~~-~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  456 (558)
                      ++..|++.          .+|+.+-. . ..|..|..+.|++.......=..++.|+.|.+.+|.+++..-         
T Consensus       316 dL~~N~L~----------~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~---------  376 (1081)
T KOG0618|consen  316 DLQSNNLP----------SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF---------  376 (1081)
T ss_pred             eehhcccc----------ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch---------
Confidence            55555554          33332111 1 113444444444441111111234456666666666654433         


Q ss_pred             ccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhh
Q 048194          457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ  536 (558)
Q Consensus       457 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  536 (558)
                            ..+..+++|+.|+|++|++.......+.+++.|++|+|++|+++ .+|.++.++..|++|...+|++. ..| .
T Consensus       377 ------p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e  447 (1081)
T KOG0618|consen  377 ------PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E  447 (1081)
T ss_pred             ------hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence                  33445899999999999999777777899999999999999999 79999999999999999999997 678 7


Q ss_pred             hcCCCCCCEEeCcCCcCee
Q 048194          537 LASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       537 ~~~l~~L~~L~l~~n~l~~  555 (558)
                      +..+++|+.+|++.|+++.
T Consensus       448 ~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hhhcCcceEEecccchhhh
Confidence            8899999999999999874

>PLN03210 Resistant to P

Probab=99.93  E-value=3.7e-24  Score=241.64  Aligned_cols=367  Identities=18%  Similarity=0.174  Sum_probs=222.4

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCC-----CccchhhcCCC-CCCEEeCcCCcCccCCChhccC
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG-----TQISSKLANIS-SLTYLNLSDAGFAGQIPVQISR  138 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~  138 (558)
                      .+|..+.+....+.........|..+++|+.|.+..+....     ..+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            45665555444333221122257778888888776543211     11455565553 5778888777776 666665 4


Q ss_pred             CCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhh
Q 048194          139 MARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT  218 (558)
Q Consensus       139 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  218 (558)
                      ..+|++|++++|.+. .++. .+..+++|++|+++++.....+|. +..+++|++|++++|.....+|..+         
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si---------  677 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI---------  677 (1153)
T ss_pred             ccCCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh---------
Confidence            677788888877776 4433 356677777777777654445553 6667777777777776555666554         


Q ss_pred             hhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCC
Q 048194          219 QIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP  298 (558)
Q Consensus       219 li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~  298 (558)
                                ..+++|+.|++++|...+.+|.. + ++++|+.|++++|......|.    ..++|+.|++++|.++.+|
T Consensus       678 ----------~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        678 ----------QYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             ----------hccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccc
Confidence                      66677777777776544455532 1 566677777776654333322    1345666666666666666


Q ss_pred             CCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEE
Q 048194          299 NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYI  378 (558)
Q Consensus       299 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  378 (558)
                      ....+++|++|++.++... .+...+.                  ...                   ......+++|+.|
T Consensus       742 ~~~~l~~L~~L~l~~~~~~-~l~~~~~------------------~l~-------------------~~~~~~~~sL~~L  783 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSE-KLWERVQ------------------PLT-------------------PLMTMLSPSLTRL  783 (1153)
T ss_pred             ccccccccccccccccchh-hcccccc------------------ccc-------------------hhhhhccccchhe
Confidence            5334555555555543321 0100000                  000                   0001112344455


Q ss_pred             EccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeecc
Q 048194          379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK  458 (558)
Q Consensus       379 ~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~  458 (558)
                      ++++|...         +.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..         
T Consensus       784 ~Ls~n~~l---------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------  844 (1153)
T PLN03210        784 FLSDIPSL---------VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------  844 (1153)
T ss_pred             eCCCCCCc---------cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---------
Confidence            55544433         3567777888888888888876555666655 6788888888887655444432         


Q ss_pred             ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCc
Q 048194          459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNN  528 (558)
Q Consensus       459 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~  528 (558)
                               ..+|+.|+|++|.++ .+|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       845 ---------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ---------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ---------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                     467888888888887 467778888888888888754333577777788888888888874

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=4e-23  Score=233.32  Aligned_cols=273  Identities=21%  Similarity=0.197  Sum_probs=176.8

Q ss_pred             CCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC-CCCCCCCCCCCCCCC
Q 048194          229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPNLKNQSQLQ  307 (558)
Q Consensus       229 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~~~~~~L~  307 (558)
                      ..+++|+.|+++++...+.+|  .++.+++|++|++++|......|.. +..+++|+.|++++| .++.+|...++++|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~  707 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLY  707 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence            344555555555443322333  2444555555555555433333433 455556666666655 455555533556666


Q ss_pred             EEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccc
Q 048194          308 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS  387 (558)
Q Consensus       308 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~  387 (558)
                      .|++++|...+.+|...     .+|++|++++|.+..++....+++|+.|++.++....                  +.+
T Consensus       708 ~L~Lsgc~~L~~~p~~~-----~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~------------------l~~  764 (1153)
T PLN03210        708 RLNLSGCSRLKSFPDIS-----TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK------------------LWE  764 (1153)
T ss_pred             EEeCCCCCCcccccccc-----CCcCeeecCCCccccccccccccccccccccccchhh------------------ccc
Confidence            66666665444444321     2366666666666554444445555555555433210                  000


Q ss_pred             cCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194          388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI  467 (558)
Q Consensus       388 ~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~  467 (558)
                      .     +....+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+                .
T Consensus       765 ~-----~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----------------~  823 (1153)
T PLN03210        765 R-----VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----------------N  823 (1153)
T ss_pred             c-----ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC----------------C
Confidence            0     001112223345689999999998888899999999999999999997666777654                2


Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEe
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLN  547 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  547 (558)
                      +++|+.|++++|.....+|..   ..+|++|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus       824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            789999999998755444432   478999999999998 7999999999999999999755456887888899999999


Q ss_pred             CcCCc
Q 048194          548 LSYNQ  552 (558)
Q Consensus       548 l~~n~  552 (558)
                      +++|.
T Consensus       900 l~~C~  904 (1153)
T PLN03210        900 FSDCG  904 (1153)
T ss_pred             cCCCc
Confidence            99884

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=1.9e-22  Score=211.79  Aligned_cols=261  Identities=25%  Similarity=0.272  Sum_probs=203.4

Q ss_pred             CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194          232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL  311 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l  311 (558)
                      ..-..|+++++.++ .+|.. +.  ++|+.|++.+|+++.. |.    .+++|++|++++|+++.+|.+  .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~-l~--~~L~~L~L~~N~Lt~L-P~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLTSL-PA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcc-hh--cCCCEEEccCCcCCCC-CC----CCCCCcEEEecCCccCcccCc--ccccceeec
Confidence            45668899999988 67743 32  4799999999998853 32    268899999999999999863  468999999


Q ss_pred             CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCC
Q 048194          312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPA  391 (558)
Q Consensus       312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  391 (558)
                      ++|.+. .+|...     ..|+.|++++|.++.++.  .+++|+.|++++|++.+ +|..+.+|+.|++++|.++     
T Consensus       270 s~N~L~-~Lp~lp-----~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~-----  335 (788)
T PRK15387        270 FSNPLT-HLPALP-----SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLT-----  335 (788)
T ss_pred             cCCchh-hhhhch-----hhcCEEECcCCccccccc--cccccceeECCCCcccc-CCCCcccccccccccCccc-----
Confidence            999886 445432     238899999999987654  25789999999999885 5667788999999999987     


Q ss_pred             CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194          392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF  471 (558)
Q Consensus       392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L  471 (558)
                           .+|..   ..+|+.|++++|+++ .+|..   .++|+.|++++|.+++ +|..                  ..+|
T Consensus       336 -----~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l------------------~~~L  384 (788)
T PRK15387        336 -----SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL------------------PSGL  384 (788)
T ss_pred             -----ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc------------------cccc
Confidence                 34432   246899999999998 45543   3578889999999874 4532                  4578


Q ss_pred             eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194          472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN  551 (558)
Q Consensus       472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  551 (558)
                      +.|++++|.+++ +|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+.++++|+.|+|++|
T Consensus       385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence            999999999985 4432   368999999999998 577543   46788999999998 68988999999999999999


Q ss_pred             cCeeec
Q 048194          552 QLEGRF  557 (558)
Q Consensus       552 ~l~~~~  557 (558)
                      +|+|.+
T Consensus       456 ~Ls~~~  461 (788)
T PRK15387        456 PLSERT  461 (788)
T ss_pred             CCCchH
Confidence            999865

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=8.7e-25  Score=202.22  Aligned_cols=132  Identities=22%  Similarity=0.266  Sum_probs=111.0

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCCc
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARLV  143 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~  143 (558)
                      ...+.|+|..|.|+...+.  .|..+++||+|||+.|.++.+ -|+.|.++++|..|-+-+ |+|+......|+++..|+
T Consensus        67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            5789999999999877766  899999999999999999988 899999999988876655 888855556789999999


Q ss_pred             EEecccccccccccchhhcCCCCccEEEccCCccCccCCc-cccCCCCCCEEeCccccC
Q 048194          144 ALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR-SMFEFPMLQQLQLANNQF  201 (558)
Q Consensus       144 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~  201 (558)
                      .|.+.-|++. -++...+..++++..|.+.+|.+. .++. .+..+..++++.+..|.+
T Consensus       144 rLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  144 RLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             HHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence            9999999988 554337899999999999999988 4554 677889999999988874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=8.1e-22  Score=206.98  Aligned_cols=222  Identities=25%  Similarity=0.266  Sum_probs=95.8

Q ss_pred             CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194          232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL  311 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l  311 (558)
                      ++|++|++++|+++ .+|.    ..++|+.|++++|.+.... .    .+..|+.|++++|+++.+|..  +++|+.|++
T Consensus       242 ~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp-~----lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdL  309 (788)
T PRK15387        242 PELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP-A----LPSGLCKLWIFGNQLTSLPVL--PPGLQELSV  309 (788)
T ss_pred             CCCcEEEecCCccC-cccC----cccccceeeccCCchhhhh-h----chhhcCEEECcCCcccccccc--ccccceeEC
Confidence            34555555555444 3331    1234455555555443211 1    123455555555555555531  244555555


Q ss_pred             CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCC
Q 048194          312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPA  391 (558)
Q Consensus       312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  391 (558)
                      ++|++.+ +|...     ..|+.|++++|.++.++..  .++|+.|++++|++++ +|..+.+++.|++++|.++     
T Consensus       310 S~N~L~~-Lp~lp-----~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~-----  375 (788)
T PRK15387        310 SDNQLAS-LPALP-----SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-----  375 (788)
T ss_pred             CCCcccc-CCCCc-----ccccccccccCcccccccc--ccccceEecCCCccCC-CCCCCcccceehhhccccc-----
Confidence            5555542 22211     1144445555544433211  1244555555554442 3333444444444444444     


Q ss_pred             CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194          392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF  471 (558)
Q Consensus       392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L  471 (558)
                           .+|..   ..+|+.|++++|.+++ +|..   .++|+.|++++|.+++ +|..                  +.+|
T Consensus       376 -----~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l------------------~~~L  424 (788)
T PRK15387        376 -----SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML------------------PSGL  424 (788)
T ss_pred             -----cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc------------------hhhh
Confidence                 22221   1235555555555542 3321   2345555555555442 2321                  2234


Q ss_pred             eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccc
Q 048194          472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS  511 (558)
Q Consensus       472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  511 (558)
                      +.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            44455555444 2344444455555555555555444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.87  E-value=4.9e-21  Score=202.49  Aligned_cols=353  Identities=18%  Similarity=0.223  Sum_probs=207.7

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCCccc----------------eEeCCCCCEEEEE
Q 048194            8 FAINIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSG----------------VDCDEAGHVIGLD   71 (558)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~----------------~~c~~~~~v~~L~   71 (558)
                      ++--+...++...++|.+.+.++.+.+.+++........|+.++++|.-..                |.|.. +.|+.+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~-~~vt~l~  127 (754)
T PRK15370         49 CIAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG-KSVTYTR  127 (754)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC-Ccccccc
Confidence            344556677888899999999999999887764445567999999997544                45543 5666666


Q ss_pred             cCCCCccccccCcccccCCCCCCEEECCCCCCCCC--ccchhh-----cCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           72 LSTESISGGIENAAILFSLHYLRSLNLARTSFNGT--QISSKL-----ANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        72 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .-+................... .=+-..+.-.+.  .-...+     .-..+...|++++++++ .+|..+.  +.|+.
T Consensus       128 ~~g~~~~~~~~~~~~~~~~~~~-w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~  203 (754)
T PRK15370        128 VTESEQASSASGSKDAVNYELI-WSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITT  203 (754)
T ss_pred             cccccccccCCCCCChhhHHHH-HHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcE
Confidence            5553221111000000000000 000000000000  000111     11135677888888877 5666553  46888


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY  224 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~  224 (558)
                      |++++|.++ .+|.. +  ..+|++|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+               
T Consensus       204 L~Ls~N~Lt-sLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l---------------  260 (754)
T PRK15370        204 LILDNNELK-SLPEN-L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERL---------------  260 (754)
T ss_pred             EEecCCCCC-cCChh-h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhH---------------
Confidence            888888887 55431 2  247888888888877 5665443  46888888888877 455432               


Q ss_pred             hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCC
Q 048194          225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS  304 (558)
Q Consensus       225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~  304 (558)
                            ..+|+.|++++|+++ .+|.. +  .++|+.|++++|+++.. |.. +  .+.|+.|++++|+++.+|. ...+
T Consensus       261 ------~s~L~~L~Ls~N~L~-~LP~~-l--~~sL~~L~Ls~N~Lt~L-P~~-l--p~sL~~L~Ls~N~Lt~LP~-~l~~  325 (754)
T PRK15370        261 ------PSALQSLDLFHNKIS-CLPEN-L--PEELRYLSVYDNSIRTL-PAH-L--PSGITHLNVQSNSLTALPE-TLPP  325 (754)
T ss_pred             ------hCCCCEEECcCCccC-ccccc-c--CCCCcEEECCCCccccC-ccc-c--hhhHHHHHhcCCccccCCc-cccc
Confidence                  246888888888887 55532 2  24788888888888743 222 1  3468888999998888876 1136


Q ss_pred             CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCc
Q 048194          305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN  384 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~  384 (558)
                      +|+.|++++|.+++ +|..+.    ++|+.|++++|.++.++... .+.|+.|++++|.++                   
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~----~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt-------------------  380 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP----PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALT-------------------  380 (754)
T ss_pred             cceeccccCCcccc-CChhhc----CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCC-------------------
Confidence            78888888888864 565442    24777777777665433211 234555555554443                   


Q ss_pred             ccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCccc----ccCCCCCEEECCCCcCc
Q 048194          385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI----AKCKMLEVLNLGNNQFS  443 (558)
Q Consensus       385 ~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~i~  443 (558)
                                  .+|..+.  ..|+.|++++|++. .+|..+    ..++.+..|++.+|+++
T Consensus       381 ------------~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        381 ------------NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ------------CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                        2333222  24666666666665 334332    33466667777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=6.5e-24  Score=196.48  Aligned_cols=405  Identities=19%  Similarity=0.163  Sum_probs=231.5

Q ss_pred             CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEeccc-ccccccccchhhcCCCCccEE
Q 048194           92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSF-NQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      .-..++|..|.++.. .+..|+.+++||.|||++|.|+..-|.+|.+++.|..|-+.+ |+|+ .+|+..|.++..|+-|
T Consensus        68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            567789999999987 778999999999999999999988999999999987776665 9998 7877789999999999


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC-
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ-  249 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-  249 (558)
                      .+..|++.-...+.+..+++|..|.+.+|.+...--..+                   ..+..++.+.+..|.+...-. 
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf-------------------~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF-------------------QGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc-------------------cchhccchHhhhcCcccccccc
Confidence            999999998888889999999999999998873322233                   556667777776665321100 


Q ss_pred             ----------hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC-CCCCCCC--CCCCCCCCEEecCCCcc
Q 048194          250 ----------LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPN--LKNQSQLQYLYLSENQI  316 (558)
Q Consensus       250 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~--~~~~~~L~~L~l~~n~l  316 (558)
                                ...++.+.-..-..+.+.++....+..+......+..-..+.+ .....|.  |..+++|+.|++++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                      0111122222222233333332222221111111111111222 2223344  66677777777777777


Q ss_pred             cccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCCCC---CCcEEEccCCcccccCCC
Q 048194          317 SREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPN---NPIYIDFSNNNFTSSIPA  391 (558)
Q Consensus       317 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~l~l~~n~~~~~~~~  391 (558)
                      ++..+.+|.....  +++|.|..|++..+...  .++..|+.|++.+|+|+...|..+.   +|..+.+-.|.+.-.=  
T Consensus       287 ~~i~~~aFe~~a~--l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC--  362 (498)
T KOG4237|consen  287 TRIEDGAFEGAAE--LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC--  362 (498)
T ss_pred             chhhhhhhcchhh--hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc--
Confidence            6666666666555  67777777766655433  3366666666666666543333222   3334444333332100  


Q ss_pred             CCccCCCCCCCCCCCCCCEE--ECcCCcCCccCCcccccCCCCCEEECCCCcCc---ccCCccccCceeeccccchhhhh
Q 048194          392 DTVNGTLPDTFPRNCLLQTL--DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS---DKFPCSLYDAPITIKGLDIKLQK  466 (558)
Q Consensus       392 ~~~~~~~p~~~~~~~~L~~L--~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~---~~~p~~~~~~~~~~~~~~~~~~~  466 (558)
                                     .|..|  .+.+....+..|  ...-..++.+.++...+.   ...|++..-.+     .. ..-.
T Consensus       363 ---------------~l~wl~~Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~-----s~-~cP~  419 (498)
T KOG4237|consen  363 ---------------RLAWLGEWLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLT-----SS-PCPP  419 (498)
T ss_pred             ---------------chHHHHHHHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCC-----CC-CCCC
Confidence                           00000  000011000000  011112333444433221   11111110000     00 0000


Q ss_pred             hhccceEE-ECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCE
Q 048194          467 ILNIFTSI-DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY  545 (558)
Q Consensus       467 ~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  545 (558)
                      .++.+.+. .-|+..++ .+|..+  ...-.+|++.+|.++ .+|.+  .+.+| .+|+++|++....-..|.++++|.+
T Consensus       420 ~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~t  492 (498)
T KOG4237|consen  420 PCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLST  492 (498)
T ss_pred             CcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhe
Confidence            12222222 22222222 344444  345678889999988 77776  66777 8899999887656677888999999


Q ss_pred             EeCcCC
Q 048194          546 LNLSYN  551 (558)
Q Consensus       546 L~l~~n  551 (558)
                      |-+++|
T Consensus       493 lilsyn  498 (498)
T KOG4237|consen  493 LILSYN  498 (498)
T ss_pred             eEEecC
Confidence            988886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.2e-19  Score=192.05  Aligned_cols=246  Identities=27%  Similarity=0.374  Sum_probs=173.3

Q ss_pred             CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEe
Q 048194          232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLY  310 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~  310 (558)
                      .+...|+++++.++ .+|.. +  .++++.|++++|+++.. |.. +  .++|+.|++++|+++.+|. +  ..+|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~LtsL-P~~-l--~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELKSL-PEN-L--QGNIKTLYANSNQLTSIPATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCCcC-Chh-h--ccCCCEEECCCCccccCChhh--hccccEEE
Confidence            45788999988887 56632 2  25788999999988843 333 2  3589999999999998886 3  34789999


Q ss_pred             cCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCC
Q 048194          311 LSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIP  390 (558)
Q Consensus       311 l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~  390 (558)
                      +++|.+. .+|..+.    .+|+.|++++|.+..++... +++|+.|++++|++++.....+.+++.|++++|.++    
T Consensus       248 Ls~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt----  317 (754)
T PRK15370        248 LSINRIT-ELPERLP----SALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT----  317 (754)
T ss_pred             CcCCccC-cCChhHh----CCCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccc----
Confidence            9999886 6676653    24889999998888654322 457888888888887543334567888888888877    


Q ss_pred             CCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhcc
Q 048194          391 ADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNI  470 (558)
Q Consensus       391 ~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~  470 (558)
                            .+|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|.++ .+|..+                 .+.
T Consensus       318 ------~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-----------------p~~  368 (754)
T PRK15370        318 ------ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-----------------PPT  368 (754)
T ss_pred             ------cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-----------------cCC
Confidence                  3443332  468888888888874 555443  67888888888876 345433                 457


Q ss_pred             ceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc----cCCCCCCeecCCCCcCc
Q 048194          471 FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF----GNLKRLESLDLSMNNLS  530 (558)
Q Consensus       471 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~L~~N~l~  530 (558)
                      |+.|++++|.++. +|..+.  .+|+.|++++|+++ .+|..+    ..++.+..|++.+|+++
T Consensus       369 L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        369 ITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8888888888874 455443  36778888888887 555544    33467788888888876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=8.8e-19  Score=172.52  Aligned_cols=87  Identities=23%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             CCCCEEEcccccCCcccC---hhhhcCCCCCCEEEccCCcccccCCCc---ccCCCCCCCEEecCCCCCCC-----CCC-
Q 048194          232 QKLTPLLLSSNNLNGTVQ---LDKILSLGNLAKLDLSYNSLAVDESSR---NYSFSPMLELLNLASCKLRE-----IPN-  299 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~~-----l~~-  299 (558)
                      ++|+.|++++|.+++...   ...+..+++|++|++++|.+.+.....   .+...++|+.|++++|.++.     +.. 
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            445555555554442111   112334445555555555544211110   02223455555555554431     112 


Q ss_pred             CCCCCCCCEEecCCCcccc
Q 048194          300 LKNQSQLQYLYLSENQISR  318 (558)
Q Consensus       300 ~~~~~~L~~L~l~~n~l~~  318 (558)
                      +..+++|++|++++|.+++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             hcccCCCCEEecCCCcCch
Confidence            4455666677776666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.1e-18  Score=171.92  Aligned_cols=288  Identities=22%  Similarity=0.212  Sum_probs=170.6

Q ss_pred             EEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC---CcccCCCCCCCEEecCCCCCCCCC-------C-CCCCC
Q 048194          236 PLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLASCKLREIP-------N-LKNQS  304 (558)
Q Consensus       236 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~-------~-~~~~~  304 (558)
                      .|+|..+.+++.-....+..+..|++++++++.++....   ...+...+.+++++++++.+...+       . +..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            466777777644444556677778888888888754321   111445666777777777655211       1 44566


Q ss_pred             CCCEEecCCCcccccCChhHHhhcc-ccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCC
Q 048194          305 QLQYLYLSENQISREIPNWIWRVSV-VGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNN  383 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n  383 (558)
                      +|+.|++++|.+.+..+..+..... ++|++|++++|.+.+.....-              ...++..+.+++.+++++|
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l--------------~~~l~~~~~~L~~L~L~~n  147 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL--------------AKGLKDLPPALEKLVLGRN  147 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH--------------HHHHHhCCCCceEEEcCCC
Confidence            7777777777765444444332211 235666666655542111000              0001111234555555555


Q ss_pred             cccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccc
Q 048194          384 NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKG  459 (558)
Q Consensus       384 ~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~  459 (558)
                      .+++...     ..++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.....+         
T Consensus       148 ~l~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------  213 (319)
T cd00116         148 RLEGASC-----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL---------  213 (319)
T ss_pred             cCCchHH-----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH---------
Confidence            5442110     12334455667788888888888742    33445566788899998888764322211         


Q ss_pred             cchhhhhhhccceEEECCCCcccccCchhhcc-----cCCCCeeeCcCCcCcc----cccccccCCCCCCeecCCCCcCc
Q 048194          460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGL-----LKSLYGLNLSHNALTG----SIPSSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       460 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~  530 (558)
                        ......+++|++|++++|.+++.....+..     .+.|++|++++|.+++    .+...+..+++|+.+++++|.++
T Consensus       214 --~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         214 --AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             --HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence              112334678889999988887643333322     3789999999998862    23445667788999999999988


Q ss_pred             cc----chhhhcCC-CCCCEEeCcCCcC
Q 048194          531 RA----IPSQLASL-YFLSYLNLSYNQL  553 (558)
Q Consensus       531 ~~----~~~~~~~l-~~L~~L~l~~n~l  553 (558)
                      ..    ....+... ..|+++++.+|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         292 EEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            54    33444444 6788999888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=2e-18  Score=142.19  Aligned_cols=170  Identities=32%  Similarity=0.523  Sum_probs=106.8

Q ss_pred             CCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCC
Q 048194          296 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP  375 (558)
Q Consensus       296 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  375 (558)
                      ++|.+..+.+++.|.+++|+++ .+|..+..+..  |+.|++++|+++                                
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~n--levln~~nnqie--------------------------------   69 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKN--LEVLNLSNNQIE--------------------------------   69 (264)
T ss_pred             hcccccchhhhhhhhcccCcee-ecCCcHHHhhh--hhhhhcccchhh--------------------------------
Confidence            4455556667777777777775 55555655554  555555555554                                


Q ss_pred             cEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcc-cCCccccCce
Q 048194          376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD-KFPCSLYDAP  454 (558)
Q Consensus       376 ~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~p~~~~~~~  454 (558)
                                           ++|.++++++.|+.|+++-|++. ..|..|+.+|.|++||+.+|.+.+ ..|..++.  
T Consensus        70 ---------------------~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~--  125 (264)
T KOG0617|consen   70 ---------------------ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY--  125 (264)
T ss_pred             ---------------------hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH--
Confidence                                 34555555555666666666655 566666666666666666665543 33433332  


Q ss_pred             eeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch
Q 048194          455 ITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP  534 (558)
Q Consensus       455 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  534 (558)
                                   +..|+-|+|+.|.+. .+|..++++++|+.|.++.|.+. .+|.+++.++.|++|.+.+|+++ .+|
T Consensus       126 -------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlp  189 (264)
T KOG0617|consen  126 -------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLP  189 (264)
T ss_pred             -------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecC
Confidence                         566666677777666 56677777777777777777776 67777777777777777777776 455


Q ss_pred             hhhcCC
Q 048194          535 SQLASL  540 (558)
Q Consensus       535 ~~~~~l  540 (558)
                      ..++++
T Consensus       190 pel~~l  195 (264)
T KOG0617|consen  190 PELANL  195 (264)
T ss_pred             hhhhhh
Confidence            555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=5.7e-18  Score=139.54  Aligned_cols=140  Identities=25%  Similarity=0.414  Sum_probs=128.5

Q ss_pred             CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194          397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF  476 (558)
Q Consensus       397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  476 (558)
                      .+|+.+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..|..+..               ++.|+.|||
T Consensus        47 ~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs---------------~p~levldl  109 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS---------------FPALEVLDL  109 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC---------------Cchhhhhhc
Confidence            78888999999999999999998 88899999999999999999986 66776654               999999999


Q ss_pred             CCCcccc-cCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194          477 STNNFKG-PILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       477 s~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      ++|++.. ..|..|..+..|+.|++++|.+. .+|..++++++|+.|.+++|.+. .+|..++.++.|++|.+.+|+++-
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence            9999864 57888999999999999999998 78999999999999999999997 799999999999999999999875

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=2e-13  Score=144.51  Aligned_cols=150  Identities=32%  Similarity=0.501  Sum_probs=114.3

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCC-----CccceEeCCC-----CCEEEEEcCCCCccccccCccc
Q 048194           17 GQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCC-----DWSGVDCDEA-----GHVIGLDLSTESISGGIENAAI   86 (558)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~~~-----~~v~~L~l~~~~~~~~~~~~~~   86 (558)
                      ..+.++|.+||+++|+++..+.     ..+|. + |+|     .|.|+.|...     ..|+.|+|+++.+.+..|.  .
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~-----~~~W~-g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~  437 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL-----RFGWN-G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--D  437 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc-----cCCCC-C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--H
Confidence            3456778999999999986432     24785 3 444     6999999532     2488888888888888877  7


Q ss_pred             ccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcC-CC
Q 048194           87 LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEH-LL  165 (558)
Q Consensus        87 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~  165 (558)
                      +..+++|+.|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+++.+|. .+.. ..
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~  515 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLL  515 (623)
T ss_pred             HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccc
Confidence            88888888888888888877 888888888888888888888888888888888888888888888877765 2333 34


Q ss_pred             CccEEEccCCcc
Q 048194          166 NLVCAVLSDNSL  177 (558)
Q Consensus       166 ~L~~L~L~~n~l  177 (558)
                      ++..+++.+|..
T Consensus       516 ~~~~l~~~~N~~  527 (623)
T PLN03150        516 HRASFNFTDNAG  527 (623)
T ss_pred             cCceEEecCCcc
Confidence            556666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=1.5e-13  Score=134.13  Aligned_cols=103  Identities=24%  Similarity=0.447  Sum_probs=63.8

Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      |+.|.+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..+.               .+.+|+.|.+..|++.. +|.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~---------------~l~slr~l~vrRn~l~~-lp~  206 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG---------------YLTSLRDLNVRRNHLED-LPE  206 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh---------------hHHHHHHHHHhhhhhhh-CCH
Confidence            667777777776 66666666667777777777664 3333332               25666666666666653 445


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  530 (558)
                      .+..+ .|..|+++.|++. .+|.+|.+|+.|++|-|.+|.+.
T Consensus       207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            55533 3566666666666 56666666666666666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.5e-12  Score=123.35  Aligned_cols=90  Identities=24%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             CCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccC--CChhccCCCCCcEEecccccccccccchhhcCCCC
Q 048194           89 SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQ--IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLN  166 (558)
Q Consensus        89 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  166 (558)
                      ++..|+...|.+..+...........|++++.|||++|-+..-  +......+|+|+.|+++.|.+.....+..-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3444555555544443321112334455555555555544311  11122344555555555554442222211223444


Q ss_pred             ccEEEccCCccC
Q 048194          167 LVCAVLSDNSLD  178 (558)
Q Consensus       167 L~~L~L~~n~l~  178 (558)
                      |+.|.++.|.++
T Consensus       199 lK~L~l~~CGls  210 (505)
T KOG3207|consen  199 LKQLVLNSCGLS  210 (505)
T ss_pred             hheEEeccCCCC
Confidence            444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=4.2e-12  Score=114.53  Aligned_cols=201  Identities=23%  Similarity=0.232  Sum_probs=108.9

Q ss_pred             hhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCc-ccccCChhHHhhccc
Q 048194          252 KILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ-ISREIPNWIWRVSVV  330 (558)
Q Consensus       252 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~  330 (558)
                      .+..+++|+.+.++.+.-......  ...-|.|.++.+.+..+...|.+-....+.....+.-. .+|.....+..... 
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i~~~--~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~-  285 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENIVDI--ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE-  285 (490)
T ss_pred             chHHhhhhheeeeeccchhheece--eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh-
Confidence            345566677777776643321111  12235677777766655555543333333332222111 11211111111122 


Q ss_pred             cceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194          331 GLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ  409 (558)
Q Consensus       331 ~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~  409 (558)
                       |+++|+++|.|+.+..... .|.++.|++++|.+.                               .+. .+..+++|+
T Consensus       286 -LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-------------------------------~v~-nLa~L~~L~  332 (490)
T KOG1259|consen  286 -LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-------------------------------TVQ-NLAELPQLQ  332 (490)
T ss_pred             -hhhccccccchhhhhhhhhhccceeEEecccccee-------------------------------eeh-hhhhcccce
Confidence             7777777777776665544 566666666666654                               222 255566677


Q ss_pred             EEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc-Cchh
Q 048194          410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP-ILED  488 (558)
Q Consensus       410 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~  488 (558)
                      .||+++|.++.. -.+=..+-+.+.|.+++|.+.                 .++..+++-+|..||+++|++... -..+
T Consensus       333 ~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~  394 (490)
T KOG1259|consen  333 LLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEVNH  394 (490)
T ss_pred             EeecccchhHhh-hhhHhhhcCEeeeehhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHhcc
Confidence            777777776632 222234566677777777664                 234445566677777777766532 2345


Q ss_pred             hcccCCCCeeeCcCCcCc
Q 048194          489 VGLLKSLYGLNLSHNALT  506 (558)
Q Consensus       489 ~~~l~~L~~L~l~~n~l~  506 (558)
                      ++++|.|+.+.|.+|.+.
T Consensus       395 IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  395 IGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             cccccHHHHHhhcCCCcc
Confidence            677777777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=5.8e-11  Score=120.36  Aligned_cols=98  Identities=29%  Similarity=0.397  Sum_probs=45.8

Q ss_pred             ceEEEcCCccccccCCCCC-C-CccCEEEcccccCccc--CCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194          332 LHCLNLSHNFLVGFQAPYS-I-PALRFIDLISNQLRGN--IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL  407 (558)
Q Consensus       332 L~~L~ls~n~l~~~~~~~~-~-~~L~~L~l~~n~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~  407 (558)
                      ++.+++.+|.++...+... . ++|+.|++++|.+...  ....+++|+.|++++|.++          .+|...+..+.
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~----------~l~~~~~~~~~  187 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS----------DLPKLLSNLSN  187 (394)
T ss_pred             eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh----------hhhhhhhhhhh
Confidence            6666666666666666544 3 2566666666665522  1122333333333333333          33333334444


Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCC
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN  440 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  440 (558)
                      |+.|++++|++. .+|........|+++.+++|
T Consensus       188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            555555555554 33333333333445555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=4.7e-11  Score=103.51  Aligned_cols=126  Identities=25%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             CCCCCCCEEECcCCcCCccCCcccc-cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          403 PRNCLLQTLDLNGNRPQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       403 ~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      .+...+++|+|++|.++. + +.++ .+.+|+.|++++|.|+..                 +.+..++.|++|++++|.+
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-----------------~~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-----------------EGLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S-------------------TT----TT--EEE--SS--
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-----------------cCccChhhhhhcccCCCCC
Confidence            344567888888888873 2 2454 467888888888888732                 2233478888888888888


Q ss_pred             cccCchhh-cccCCCCeeeCcCCcCcccc-cccccCCCCCCeecCCCCcCcccc---hhhhcCCCCCCEEeC
Q 048194          482 KGPILEDV-GLLKSLYGLNLSHNALTGSI-PSSFGNLKRLESLDLSMNNLSRAI---PSQLASLYFLSYLNL  548 (558)
Q Consensus       482 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l  548 (558)
                      +... ..+ ..+++|++|++++|+|.... -..+..+++|+.|++.+|+++..-   ...+..+++|+.||-
T Consensus        77 ~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   77 SSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             Cccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            8543 334 46888888999888886422 245677888888999988887431   133556788888874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=2.1e-12  Score=126.26  Aligned_cols=194  Identities=25%  Similarity=0.308  Sum_probs=146.7

Q ss_pred             CCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEc
Q 048194          281 SPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDL  359 (558)
Q Consensus       281 ~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l  359 (558)
                      +..-...+++.|++.++|. +..+..|+.+.+..|.+. .+|..+..+..  |..++|+.|+++-.+.....--|+.|-+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~--lt~l~ls~NqlS~lp~~lC~lpLkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEA--LTFLDLSSNQLSHLPDGLCDLPLKVLIV  150 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhH--HHHhhhccchhhcCChhhhcCcceeEEE
Confidence            3445567777787777777 666677777777777774 67777777776  7777777777776665533222555555


Q ss_pred             ccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCC
Q 048194          360 ISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGN  439 (558)
Q Consensus       360 ~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  439 (558)
                      ++|+++                               .+|+.++....|..||.+.|.+. .+|..++.+.+|+.|.+..
T Consensus       151 sNNkl~-------------------------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  151 SNNKLT-------------------------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             ecCccc-------------------------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence            555543                               78888888889999999999998 7888899999999999999


Q ss_pred             CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccC---C
Q 048194          440 NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN---L  516 (558)
Q Consensus       440 n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---l  516 (558)
                      |++.. +|.++.                .-.|..||+|+|++. .+|..|-.|.+|++|.|.+|.+. ..|..+..   .
T Consensus       199 n~l~~-lp~El~----------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkV  259 (722)
T KOG0532|consen  199 NHLED-LPEELC----------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKV  259 (722)
T ss_pred             hhhhh-CCHHHh----------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccce
Confidence            99874 555443                235889999999998 58899999999999999999998 66665533   3


Q ss_pred             CCCCeecCCCCc
Q 048194          517 KRLESLDLSMNN  528 (558)
Q Consensus       517 ~~L~~L~L~~N~  528 (558)
                      .--+.|+...|+
T Consensus       260 HIFKyL~~qA~q  271 (722)
T KOG0532|consen  260 HIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeecchhcc
Confidence            345678888775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=1.2e-10  Score=118.09  Aligned_cols=196  Identities=28%  Similarity=0.392  Sum_probs=119.6

Q ss_pred             CEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC-CCCCEEecCCCCCCCCCC-CCCCCCCCEEecC
Q 048194          235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS-PMLELLNLASCKLREIPN-LKNQSQLQYLYLS  312 (558)
Q Consensus       235 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~  312 (558)
                      ..++...+.+....  ..+..++.++.|++.+|.+....+.  .... ++|+.|++++|++..+|. +..+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc--hhhhcccceeEEecCCcccccCccc--cccchhhcccccccccchhhhhhhhhccccccccccC
Confidence            35777777663222  2345557788888888887754442  2334 378888888888888864 7888888888888


Q ss_pred             CCcccccCChhHHhhccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCC--CCCCCcEEEccCCcccccC
Q 048194          313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQ--LPNNPIYIDFSNNNFTSSI  389 (558)
Q Consensus       313 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~--~~~~l~~l~l~~n~~~~~~  389 (558)
                      +|++. .+|........  |+.|++++|.+..++.... ...|+++.+++|.+...+..  ...++..+.+.+|++.   
T Consensus       172 ~N~l~-~l~~~~~~~~~--L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~---  245 (394)
T COG4886         172 FNDLS-DLPKLLSNLSN--LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE---  245 (394)
T ss_pred             Cchhh-hhhhhhhhhhh--hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee---
Confidence            88875 45544434444  7888888888877777643 44577777777743322211  1334445555555554   


Q ss_pred             CCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCcc
Q 048194          390 PADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCS  449 (558)
Q Consensus       390 ~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~  449 (558)
                             .++..++.++.+++|++++|.++...+  ++.+.+++.|++++|.+....|..
T Consensus       246 -------~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         246 -------DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -------eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence                   234455555556666666666653222  555666666666666665544443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-11  Score=116.43  Aligned_cols=110  Identities=30%  Similarity=0.340  Sum_probs=64.6

Q ss_pred             cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccc
Q 048194          254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVV  330 (558)
Q Consensus       254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  330 (558)
                      ..+++|+.|+++.|++........-..+++|+.|.++.|.++  ++.. +..+|+|+.|++.+|.....-.....-... 
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-  247 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT-  247 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH-
Confidence            345555555555555542222222234566777777777776  3333 556777888888777422222222222333 


Q ss_pred             cceEEEcCCccccccCCC--C-CCCccCEEEcccccCc
Q 048194          331 GLHCLNLSHNFLVGFQAP--Y-SIPALRFIDLISNQLR  365 (558)
Q Consensus       331 ~L~~L~ls~n~l~~~~~~--~-~~~~L~~L~l~~n~~~  365 (558)
                       |++|||++|++.+....  . .+|.|..|+++.+.+.
T Consensus       248 -L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  248 -LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             -HhhccccCCcccccccccccccccchhhhhccccCcc
Confidence             88888888888776643  2 2778888888777765

>PLN03150 hypothetical protein; Provisional

Probab=99.10  E-value=1.4e-10  Score=122.94  Aligned_cols=108  Identities=31%  Similarity=0.504  Sum_probs=75.0

Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..               +++|+.|+|++|++++.+|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~---------------l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS---------------ITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC---------------CCCCCEEECCCCCCCCCCch
Confidence            566777777777777777777777777777777777776665543               66777777777777777777


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccccCC-CCCCeecCCCCcCc
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSFGNL-KRLESLDLSMNNLS  530 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~N~l~  530 (558)
                      .++.+++|+.|+|++|++++.+|..+... .++..+++.+|...
T Consensus       485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            77777777777777777777777666543 35566667766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2.9e-11  Score=109.18  Aligned_cols=127  Identities=27%  Similarity=0.263  Sum_probs=56.3

Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      |+++|+++|.++ .+.+.+.-.|.++.|++++|.+....                 ....+++|+.||||+|.++.. ..
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-----------------nLa~L~~L~~LDLS~N~Ls~~-~G  346 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-----------------NLAELPQLQLLDLSGNLLAEC-VG  346 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-----------------hhhhcccceEeecccchhHhh-hh
Confidence            445555555544 33344444455555555555544211                 112244555555555544421 11


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc-chhhhcCCCCCCEEeCcCCcCee
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA-IPSQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      .=..+.+.+.|.|+.|.|.  .-.+++.+-+|..||+++|++... --..+++++-|+.+.|.+|++.+
T Consensus       347 wh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  347 WHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            1223444455555555443  223344444555555555554321 11334445555555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=9.5e-12  Score=114.89  Aligned_cols=117  Identities=22%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CCCCCCCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECC
Q 048194          402 FPRNCLLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFS  477 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  477 (558)
                      +...+.|+.+.+..|.+...    +...+.+++.|++|||..|.++......+.           ..+..+++|++|+++
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-----------kaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----------KALSSWPHLRELNLG  249 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-----------HHhcccchheeeccc
Confidence            34445566666666665421    223456667777777777666533222211           122335566666666


Q ss_pred             CCcccccCchhh-----cccCCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcC
Q 048194          478 TNNFKGPILEDV-----GLLKSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNL  529 (558)
Q Consensus       478 ~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l  529 (558)
                      +|.+.......|     ...|+|+.|.+.+|.|+..    +..++...+.|++|+|++|++
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            666654433333     2256666666666666521    223344456666666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1e-10  Score=101.38  Aligned_cols=13  Identities=38%  Similarity=0.442  Sum_probs=0.0

Q ss_pred             CCcEEeccccccc
Q 048194          141 RLVALDFSFNQFS  153 (558)
Q Consensus       141 ~L~~L~L~~n~~~  153 (558)
                      ++++|+|++|.|+
T Consensus        20 ~~~~L~L~~n~I~   32 (175)
T PF14580_consen   20 KLRELNLRGNQIS   32 (175)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            3444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=1.4e-11  Score=113.69  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=19.1

Q ss_pred             CCCCCCEEEcccccCCc---ccChhhhcCCCCCCEEEccCCccc
Q 048194          230 RTQKLTPLLLSSNNLNG---TVQLDKILSLGNLAKLDLSYNSLA  270 (558)
Q Consensus       230 ~~~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~  270 (558)
                      ..+.|+.+.+..|.+..   ......+..+++|+.||+..|-++
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            33455555555554431   011233445555555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.8e-09  Score=117.08  Aligned_cols=83  Identities=22%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             CCCEEeCcCCc--CccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194          117 SLTYLNLSDAG--FAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL  194 (558)
Q Consensus       117 ~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  194 (558)
                      +|++|-+.+|.  +....+..|..++.|+.|||++|.-.+.+|. .++.+.+|++|+++++.+. .+|..+.++.+|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            45555555443  3322222344455555555555443334444 3555555555555555554 455555555555555


Q ss_pred             eCccccC
Q 048194          195 QLANNQF  201 (558)
Q Consensus       195 ~l~~n~~  201 (558)
                      ++..+..
T Consensus       624 nl~~~~~  630 (889)
T KOG4658|consen  624 NLEVTGR  630 (889)
T ss_pred             ccccccc
Confidence            5555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.1e-09  Score=77.94  Aligned_cols=60  Identities=50%  Similarity=0.657  Sum_probs=32.9

Q ss_pred             CCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 048194          494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL  553 (558)
Q Consensus       494 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l  553 (558)
                      +|++|++++|+++...+..|..+++|+.|++++|+++...+..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555533334555555555555555555544445555555555555555553

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=4e-10  Score=114.35  Aligned_cols=104  Identities=32%  Similarity=0.354  Sum_probs=55.2

Q ss_pred             CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceE
Q 048194          256 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC  334 (558)
Q Consensus       256 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  334 (558)
                      +..++.+.+..|.+...  ...+..+.+++.+++.+|++..+.. +..+++|++|++++|.|+...+  +..+..  |+.
T Consensus        71 l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~--L~~  144 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTL--LKE  144 (414)
T ss_pred             hHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccc--hhh
Confidence            33444444555544420  1113445566666666666666666 6666666666666666643322  222333  566


Q ss_pred             EEcCCccccccCCCCCCCccCEEEcccccCc
Q 048194          335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLR  365 (558)
Q Consensus       335 L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~  365 (558)
                      |++++|.++.+.....++.|+.+++++|++.
T Consensus       145 L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  145 LNLSGNLISDISGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             heeccCcchhccCCccchhhhcccCCcchhh
Confidence            6666666655554444555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.9e-09  Score=76.83  Aligned_cols=61  Identities=39%  Similarity=0.475  Sum_probs=51.6

Q ss_pred             ccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcC
Q 048194          469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL  529 (558)
Q Consensus       469 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l  529 (558)
                      ++|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888877777888899999999999999877777889999999999998875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.82  E-value=3.6e-09  Score=114.80  Aligned_cols=129  Identities=24%  Similarity=0.244  Sum_probs=98.1

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCC--CCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCC
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTS--FNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARL  142 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  142 (558)
                      ..++++.+.++.+.....    -...+.|++|-+..|.  +... ....|..++.|+.|||++|.--+.+|..++.+-+|
T Consensus       523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            456667766666542221    2334478888888885  4433 34558889999999999887777899999999999


Q ss_pred             cEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc
Q 048194          143 VALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ  200 (558)
Q Consensus       143 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  200 (558)
                      |+|+++++.+. .+|. .++++..|.+|++..+.....+|.....+.+|++|.+....
T Consensus       598 ryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hcccccCCCcc-ccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999988 7776 68999999999999887665666767779999999887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=5.1e-10  Score=113.60  Aligned_cols=242  Identities=24%  Similarity=0.248  Sum_probs=150.4

Q ss_pred             CCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEE
Q 048194          280 FSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFID  358 (558)
Q Consensus       280 ~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~  358 (558)
                      .+..++.+.+..|.++.+-. +..+.+++.+++.+|.+.. +...+..+..  |+.|++++|.|+.+.....++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~--L~~L~ls~N~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVN--LQVLDLSFNKITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhc--chheeccccccccccchhhccchhhhe
Confidence            35667777788888887444 8888899999999998863 3332444454  899999999998888877777788888


Q ss_pred             cccccCcccCC-CCCCCCcEEEccCCcccccCCCCCccCCCCCC-CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194          359 LISNQLRGNIH-QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDT-FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN  436 (558)
Q Consensus       359 l~~n~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  436 (558)
                      +++|.+...-- ..+..++.+++++|.+.          .+... ...+..++.+++.+|.+...  ..+..+..+..++
T Consensus       147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~----------~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~  214 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSLKLLDLSYNRIV----------DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLS  214 (414)
T ss_pred             eccCcchhccCCccchhhhcccCCcchhh----------hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhh
Confidence            88888873211 12556666666666665          22221 34455566666666666422  1233333444445


Q ss_pred             CCCCcCcccCCccccCceeeccccchhhhhhhc--cceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILN--IFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       437 l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      +..|.++..-+-.                 ...  +|+.+++++|.+.. .+..+..+..+..|++.+|++..  -..+.
T Consensus       215 l~~n~i~~~~~l~-----------------~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~--~~~~~  274 (414)
T KOG0531|consen  215 LLDNKISKLEGLN-----------------ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN--LEGLE  274 (414)
T ss_pred             cccccceeccCcc-----------------cchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc--ccccc
Confidence            5555554322211                 122  37778888887764 22556667777788888777762  22345


Q ss_pred             CCCCCCeecCCCCcCccc---chhh-hcCCCCCCEEeCcCCcCeee
Q 048194          515 NLKRLESLDLSMNNLSRA---IPSQ-LASLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l~~~---~~~~-~~~l~~L~~L~l~~n~l~~~  556 (558)
                      ....+..+...+|++...   .... ......++.+++.+|++...
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            566677777777776521   1111 44566788888888876653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=3.5e-10  Score=102.25  Aligned_cols=161  Identities=21%  Similarity=0.148  Sum_probs=100.3

Q ss_pred             CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccc-cccccccchhhcCCCCccEE
Q 048194           92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFN-QFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L  170 (558)
                      .|++|||++..++...+...++.|.+|+.|.|.++.+.+.+...+++-.+|+.|+++.+ .++.......+++++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            58888888887766556666788888888888888888888888888888888888875 34433344457888888888


Q ss_pred             EccCCccCccCCcccc--CCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194          171 VLSDNSLDGSIPRSMF--EFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV  248 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~  248 (558)
                      +++.|.+.......+.  --++|+.|++++++-.-... .               ++-+..+++++.+|||++|.....-
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h---------------~~tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-H---------------LSTLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-H---------------HHHHHHhCCceeeeccccccccCch
Confidence            8888876533222111  13567778887765320000 0               0001156667777777665422121


Q ss_pred             ChhhhcCCCCCCEEEccCCc
Q 048194          249 QLDKILSLGNLAKLDLSYNS  268 (558)
Q Consensus       249 ~~~~~~~l~~L~~L~l~~n~  268 (558)
                      -...+.+++-|++|.++.|.
T Consensus       330 ~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  330 CFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHHHHHhcchheeeehhhhc
Confidence            12334455556666555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=7.1e-10  Score=100.33  Aligned_cols=60  Identities=23%  Similarity=0.137  Sum_probs=33.8

Q ss_pred             CCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc
Q 048194          141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ  200 (558)
Q Consensus       141 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  200 (558)
                      .|++|||++..++...-...++.+.+|+.|.+.++++++.+...+.+-.+|+.|+++.+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence            466666666555533322235556666666666666665555555566666666666553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.55  E-value=1.1e-07  Score=61.75  Aligned_cols=41  Identities=46%  Similarity=0.891  Sum_probs=30.3

Q ss_pred             cHHHHHHHHHHHhhcCCCCCCCcccCCCCCC--CCCCCccceEeC
Q 048194           20 QSDQQTLLLQLKSSLTFDPSSSVKLMQWRQS--TDCCDWSGVDCD   62 (558)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~c~   62 (558)
                      +.+|++||++||+++..++..  .+.+|+..  .++|.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~--~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSG--VLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-C--CCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCc--ccccCCCcCCCCCeeeccEEeC
Confidence            357999999999999976532  78999986  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=8.5e-08  Score=87.10  Aligned_cols=84  Identities=24%  Similarity=0.384  Sum_probs=41.7

Q ss_pred             CCCCCEEeCcCCcCcc--CCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCcc-CCccccCCCCC
Q 048194          115 ISSLTYLNLSDAGFAG--QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS-IPRSMFEFPML  191 (558)
Q Consensus       115 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L  191 (558)
                      +..++.+||.+|.+++  .+...+.+||.|++|+++.|++...|.... ....+|++|.|.+..+.=. ....+..+|++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4455566666665541  122334456666666666666654442211 2345566666655544311 22233455666


Q ss_pred             CEEeCccc
Q 048194          192 QQLQLANN  199 (558)
Q Consensus       192 ~~L~l~~n  199 (558)
                      +.|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            66666555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=3.6e-09  Score=106.83  Aligned_cols=126  Identities=27%  Similarity=0.257  Sum_probs=56.2

Q ss_pred             CCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCc
Q 048194          118 LTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLA  197 (558)
Q Consensus       118 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  197 (558)
                      |...+.++|.+. ..-.++.-++.|+.|+|++|+++ ...  .+..++.|++|||++|.+. .+|..=..-.+|+.|+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            334444444443 23333444455555555555554 222  2445555555555555554 233211111125555555


Q ss_pred             cccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcc
Q 048194          198 NNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL  269 (558)
Q Consensus       198 ~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  269 (558)
                      +|.++.. -..                    .++++|+.||+++|-+.+.-....+..+..|+.|++.+|.+
T Consensus       241 nN~l~tL-~gi--------------------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL-RGI--------------------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh-hhH--------------------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5544311 110                    44555555555555554433333344444555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1e-08  Score=103.53  Aligned_cols=83  Identities=39%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch-hhhcCCCCCCEE
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP-SQLASLYFLSYL  546 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L  546 (558)
                      ++.|++|||++|.+....-.+..+++ |+.|.+++|.++.  -..+.++.+|+.||+++|-+.+.-- ..+..+.+|+.|
T Consensus       208 l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             cccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            44444444444444432222233333 5555555555441  1234455555555555554432110 112333445555


Q ss_pred             eCcCCcC
Q 048194          547 NLSYNQL  553 (558)
Q Consensus       547 ~l~~n~l  553 (558)
                      +|.||++
T Consensus       285 ~LeGNPl  291 (1096)
T KOG1859|consen  285 WLEGNPL  291 (1096)
T ss_pred             hhcCCcc
Confidence            5555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=1.6e-07  Score=85.42  Aligned_cols=37  Identities=22%  Similarity=0.138  Sum_probs=19.7

Q ss_pred             CCCCCCCCEEECcCCcCCccCC------cccccCCCCCEEECC
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVP------KSIAKCKMLEVLNLG  438 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~l~  438 (558)
                      +.++++|..|.++++++.+.+-      -.++.+++++.|+=+
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            4555666666666666643221      124556666665433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=9.4e-07  Score=79.44  Aligned_cols=238  Identities=18%  Similarity=0.143  Sum_probs=128.8

Q ss_pred             CCCCCCEEecCCCcccccCChhHHhh--ccccceEEEcCCcccccc-----------C-CCCCCCccCEEEcccccCccc
Q 048194          302 NQSQLQYLYLSENQISREIPNWIWRV--SVVGLHCLNLSHNFLVGF-----------Q-APYSIPALRFIDLISNQLRGN  367 (558)
Q Consensus       302 ~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~-----------~-~~~~~~~L~~L~l~~n~~~~~  367 (558)
                      .+..++.+++|+|.+......+++..  ...+|+..+++.-.....           . ...+||+|+.++++.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            45567777777777755544444432  123366666665322111           1 114589999999999988755


Q ss_pred             CCCC-------CCCCcEEEccCCcccccCCCCCccCCCC---------CCCCCCCCCCEEECcCCcCCccCCc-----cc
Q 048194          368 IHQL-------PNNPIYIDFSNNNFTSSIPADTVNGTLP---------DTFPRNCLLQTLDLNGNRPQGTVPK-----SI  426 (558)
Q Consensus       368 ~~~~-------~~~l~~l~l~~n~~~~~~~~~~~~~~~p---------~~~~~~~~L~~L~l~~n~l~~~~~~-----~l  426 (558)
                      .|..       -..+..|.+++|.+.- +--    +.+.         .-...-+.|+..+...|++.. .+.     .+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG----~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l  181 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGP-IAG----GRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALL  181 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCc-cch----hHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHH
Confidence            4432       2356677777776531 000    0111         011223456677777776642 221     12


Q ss_pred             ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC----chhhcccCCCCeeeCcC
Q 048194          427 AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI----LEDVGLLKSLYGLNLSH  502 (558)
Q Consensus       427 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~  502 (558)
                      ..-..|+++.+..|.|....-.          -+.......+++|+.||+..|-++...    ...+..++.|++|.+..
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~----------~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVT----------MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhH----------HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            2224667777777665422111          111233345777888888888776432    22344466778888888


Q ss_pred             CcCcccccccc------cCCCCCCeecCCCCcCcccc------hhhh-cCCCCCCEEeCcCCcCee
Q 048194          503 NALTGSIPSSF------GNLKRLESLDLSMNNLSRAI------PSQL-ASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       503 n~l~~~~~~~l------~~l~~L~~L~L~~N~l~~~~------~~~~-~~l~~L~~L~l~~n~l~~  555 (558)
                      |-++.....++      ...++|..|-..+|...+.+      +... ..++-|..|.+.+|+|.+
T Consensus       252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            87664433322      13367777777777654322      2111 235667777777777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=1.1e-07  Score=76.34  Aligned_cols=129  Identities=24%  Similarity=0.342  Sum_probs=73.1

Q ss_pred             CCEEECcCCcCCccCCcccc---cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194          408 LQTLDLNGNRPQGTVPKSIA---KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP  484 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  484 (558)
                      +..++|+.|++. .+++...   ....|+.+++++|.+. .+|..+.              .+++..++|++++|.+.. 
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft--------------~kf~t~t~lNl~~neisd-   91 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFT--------------IKFPTATTLNLANNEISD-   91 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHh--------------hccchhhhhhcchhhhhh-
Confidence            445666666665 3444333   3334555677777665 3333322              235566777777777763 


Q ss_pred             CchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194          485 ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       485 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      +|..++.++.|+.|+++.|.+. ..|.-+..+.++-.||.-+|.+. .+|..+-.-+..-..++.++++.|
T Consensus        92 vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen   92 VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence            5566777777777777777776 56666666777777777777665 333222222233333445555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.09  E-value=9.2e-08  Score=90.97  Aligned_cols=281  Identities=19%  Similarity=0.068  Sum_probs=150.0

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCC-ccchhhcCCCCCCEEeCcCC-cCccCCChhc-cCCCC
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGT-QISSKLANISSLTYLNLSDA-GFAGQIPVQI-SRMAR  141 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~  141 (558)
                      ++++++.++|+.-.+.-+.......++++++|++.++..... .....-..+++|++|++..| .++...-..+ ..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            456666666665544433333445666666666666542222 11122234666777777664 3333222222 34667


Q ss_pred             CcEEeccccc-ccccccchhhcCCCCccEEEccCCccCccCCccc----cCCCCCCEEeCccccCCCCCCccccccccch
Q 048194          142 LVALDFSFNQ-FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSM----FEFPMLQQLQLANNQFGGSIPRFSNASSSAL  216 (558)
Q Consensus       142 L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l  216 (558)
                      |++|+++++. +++..-....+++..++.+.+.+|.-.  ....+    ..++-+..+++..|.......          
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~----------  285 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDED----------  285 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchH----------
Confidence            7777776653 232221113455555666655544211  00111    123445555555543211110          


Q ss_pred             hhhhchhhhcccCCCCCCCEEEcccccCCcccChhh-hcCCCCCCEEEccCCc-ccccCCCcccCCCCCCCEEecCCCCC
Q 048194          217 DTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK-ILSLGNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASCKL  294 (558)
Q Consensus       217 ~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l  294 (558)
                             +..+...+..|+.|+.+++...+..+... -.+..+|+.+.+..++ +++......-.+++.|+.+++..+..
T Consensus       286 -------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  286 -------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             -------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence                   11112456778888888765433333222 3467889999888885 44444444345778899999988855


Q ss_pred             C---CCCC-CCCCCCCCEEecCCCccc-ccCChhHHh--hccccceEEEcCCccccccCCC---CCCCccCEEEcccccC
Q 048194          295 R---EIPN-LKNQSQLQYLYLSENQIS-REIPNWIWR--VSVVGLHCLNLSHNFLVGFQAP---YSIPALRFIDLISNQL  364 (558)
Q Consensus       295 ~---~l~~-~~~~~~L~~L~l~~n~l~-~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~~L~~L~l~~n~~  364 (558)
                      .   ++.. -.+++.|+.+.+++|... +.....+..  .....++.+.++++........   ..+++|+.+++-.++-
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            4   3444 567888999999988643 221111111  2334478888888877544332   2377888877776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.02  E-value=7.6e-07  Score=80.01  Aligned_cols=136  Identities=19%  Similarity=0.297  Sum_probs=73.3

Q ss_pred             CCEEEEEcCCCCccccccC--cccccCCCCCCEEECCCCCCCCC--ccc-------hhhcCCCCCCEEeCcCCcCccCCC
Q 048194           65 GHVIGLDLSTESISGGIEN--AAILFSLHYLRSLNLARTSFNGT--QIS-------SKLANISSLTYLNLSDAGFAGQIP  133 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~--~~~-------~~~~~l~~L~~L~L~~n~l~~~~p  133 (558)
                      ..++.++||||.+......  ...++.-++|+..+++.--....  .++       ..+-+||+|+..+|++|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5678888888877532211  01455667777777764311110  122       334567788888888887765555


Q ss_pred             hh----ccCCCCCcEEecccccccccccch-------------hhcCCCCccEEEccCCccCccCCcc-----ccCCCCC
Q 048194          134 VQ----ISRMARLVALDFSFNQFSGSISSI-------------RWEHLLNLVCAVLSDNSLDGSIPRS-----MFEFPML  191 (558)
Q Consensus       134 ~~----l~~l~~L~~L~L~~n~~~~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L  191 (558)
                      ..    +++-+.|++|.+++|.+. .+...             ...+-|.|+++....|++.. .+..     +.....|
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l  187 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL  187 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence            43    445577777777777654 22110             12234556666666665541 1111     1122456


Q ss_pred             CEEeCccccCC
Q 048194          192 QQLQLANNQFG  202 (558)
Q Consensus       192 ~~L~l~~n~~~  202 (558)
                      +++.+..|.|.
T Consensus       188 k~vki~qNgIr  198 (388)
T COG5238         188 KEVKIQQNGIR  198 (388)
T ss_pred             eeEEeeecCcC
Confidence            66666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=2e-05  Score=77.20  Aligned_cols=50  Identities=8%  Similarity=-0.016  Sum_probs=28.9

Q ss_pred             ceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCC-CCCCCcEEEccCC
Q 048194          332 LHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ-LPNNPIYIDFSNN  383 (558)
Q Consensus       332 L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~n  383 (558)
                      ++.|++++|.++.++.  -.++|+.|.+++|.-...+|. .+.+|+.|++++|
T Consensus        54 l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         54 SGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             CCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            7777777776666541  133577777766543333342 3446666666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=2.2e-06  Score=91.02  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=16.3

Q ss_pred             cCCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc
Q 048194          162 EHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ  200 (558)
Q Consensus       162 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  200 (558)
                      .++++|..||+++++++..  ..++.+++|+.|.+.+=.
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe  206 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLE  206 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccCCC
Confidence            3444444444444444321  334444444444444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=7.4e-06  Score=53.22  Aligned_cols=36  Identities=31%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             CCCEEeCcCCcCccCCChhccCCCCCcEEeccccccc
Q 048194          117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFS  153 (558)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~  153 (558)
                      +|++|++++|.++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 45555666666666666666666

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=6e-06  Score=53.64  Aligned_cols=36  Identities=44%  Similarity=0.672  Sum_probs=16.8

Q ss_pred             CCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194          494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       494 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  530 (558)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555554 34434455555555555555544

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.93  E-value=3.1e-07  Score=87.45  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=17.5

Q ss_pred             hccceEEECCCCccc-ccCchhhcccCCCCeeeCcCCc
Q 048194          468 LNIFTSIDFSTNNFK-GPILEDVGLLKSLYGLNLSHNA  504 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~  504 (558)
                      +..|+.+.|+++... ......+..+++|+.+++-+++
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            444555555555432 2233344445555555555553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=2.6e-06  Score=68.63  Aligned_cols=87  Identities=28%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             hhhccceEEECCCCcccccCchhh-cccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCC
Q 048194          466 KILNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLS  544 (558)
Q Consensus       466 ~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  544 (558)
                      .....|+.++|++|.+... |..| ..++.++.|++++|.|+ .+|+++..++.|+.|+++.|.+. ..|.-+..+.+|-
T Consensus        50 ~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             hCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            3467788999999999964 4555 45679999999999999 78999999999999999999998 5677777799999


Q ss_pred             EEeCcCCcCee
Q 048194          545 YLNLSYNQLEG  555 (558)
Q Consensus       545 ~L~l~~n~l~~  555 (558)
                      .|+..+|.+..
T Consensus       127 ~Lds~~na~~e  137 (177)
T KOG4579|consen  127 MLDSPENARAE  137 (177)
T ss_pred             HhcCCCCcccc
Confidence            99999887643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=9.8e-05  Score=72.49  Aligned_cols=54  Identities=13%  Similarity=0.222  Sum_probs=28.5

Q ss_pred             cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC-CCCCCCC-CCCCCCCCEEecCCC
Q 048194          254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPN-LKNQSQLQYLYLSEN  314 (558)
Q Consensus       254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~-~~~~~~L~~L~l~~n  314 (558)
                      ..+.+++.|++++|.++.. |    ...++|+.|.+.+| .++.+|. +  .++|+.|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3456666666666655432 2    11334666666654 4455554 2  245666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2.9e-05  Score=67.08  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             CCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194           90 LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        90 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  169 (558)
                      +.+...+||++|.+...   +.|..++.|.+|.+.+|.|+..-|.--.-+++|..|.+.+|.+.....-..+..+++|++
T Consensus        41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            34677889999888654   557888899999999999985555544457889999999998873222224788899999


Q ss_pred             EEccCCccCccC---CccccCCCCCCEEeCccccC
Q 048194          170 AVLSDNSLDGSI---PRSMFEFPMLQQLQLANNQF  201 (558)
Q Consensus       170 L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n~~  201 (558)
                      |.+-+|.+...-   --.+..+|+|+.||+.+-..
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999998876321   12356789999999986543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=7.1e-06  Score=87.24  Aligned_cols=138  Identities=22%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             CCEEEEEcCCCCcc-ccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCc
Q 048194           65 GHVIGLDLSTESIS-GGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLV  143 (558)
Q Consensus        65 ~~v~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  143 (558)
                      .++++|+++|.... ..++. ..-..||+|++|.+.+-.+....+.....++|+|+.||+++++++..  ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            57888999886643 22332 13357899999999987775543556667899999999999999843  6789999999


Q ss_pred             EEecccccccccccchhhcCCCCccEEEccCCccCccC--C----ccccCCCCCCEEeCccccCCCCC
Q 048194          144 ALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSI--P----RSMFEFPMLQQLQLANNQFGGSI  205 (558)
Q Consensus       144 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~~~  205 (558)
                      .|.+.+=.+.....-..+.++++|+.||+|........  .    +.-..+|.|+.||.+++.+.+..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            99998877763222236889999999999987654221  1    11224899999999998876543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=6.3e-05  Score=65.08  Aligned_cols=61  Identities=28%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             CCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC---CCCCCCCCEEecCCCcc
Q 048194          255 SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQI  316 (558)
Q Consensus       255 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~---~~~~~~L~~L~l~~n~l  316 (558)
                      .++.|.+|.+.+|+|+...+.- -..+++|..|.+.+|.+..+.+   +..+++|++|.+-+|++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             CccccceEEecCCcceeeccch-hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence            3334444444444443322221 2233344444444444332222   33444444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=1.6e-05  Score=71.98  Aligned_cols=84  Identities=21%  Similarity=0.203  Sum_probs=47.6

Q ss_pred             hhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccc-ccccCCCCCCeecCCCCcCcccchh-----
Q 048194          462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAIPS-----  535 (558)
Q Consensus       462 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~-----  535 (558)
                      ++.+.+++.|+.|.||-|.++.  ...+..|+.|++|+|..|.|.+..- ..+.++++|+.|.|..|.=.+..+.     
T Consensus        34 Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~  111 (388)
T KOG2123|consen   34 ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK  111 (388)
T ss_pred             HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence            3444556666666666666653  3445667777777777776653211 2356667777777777665544332     


Q ss_pred             hhcCCCCCCEEe
Q 048194          536 QLASLYFLSYLN  547 (558)
Q Consensus       536 ~~~~l~~L~~L~  547 (558)
                      .+.-+++|+.||
T Consensus       112 VLR~LPnLkKLD  123 (388)
T KOG2123|consen  112 VLRVLPNLKKLD  123 (388)
T ss_pred             HHHHcccchhcc
Confidence            233455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00022  Score=64.50  Aligned_cols=109  Identities=19%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCC--cCccCCChhccCCCCCcEEecccccccc--cccchhh
Q 048194           86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDA--GFAGQIPVQISRMARLVALDFSFNQFSG--SISSIRW  161 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~~~~--~~~~~~~  161 (558)
                      ....+..|+.|++.+..++..   ..+..+++|++|.++.|  ++.+.++.-...+++|++|++++|++..  .++  .+
T Consensus        38 l~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl  112 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PL  112 (260)
T ss_pred             ccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hh
Confidence            344556667777766666554   44667778888888888  6665555555566888888888888762  222  35


Q ss_pred             cCCCCccEEEccCCccCccC---CccccCCCCCCEEeCccc
Q 048194          162 EHLLNLVCAVLSDNSLDGSI---PRSMFEFPMLQQLQLANN  199 (558)
Q Consensus       162 ~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n  199 (558)
                      ..+.+|..|++.+|..+..-   -..+.-+++|++|+-...
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            66777888888887665311   112334677888776544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.05  E-value=0.0017  Score=54.04  Aligned_cols=84  Identities=14%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             hhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCC
Q 048194          111 KLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPM  190 (558)
Q Consensus       111 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  190 (558)
                      .|.++.+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++...+.+++.++.+.+.. .+.......+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            344555555555543 233233334555555555555543 33 33333455555555555543 222122233344555


Q ss_pred             CCEEeCcc
Q 048194          191 LQQLQLAN  198 (558)
Q Consensus       191 L~~L~l~~  198 (558)
                      |+.+++..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            55555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.02  E-value=0.0024  Score=53.16  Aligned_cols=123  Identities=18%  Similarity=0.244  Sum_probs=60.7

Q ss_pred             CCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc
Q 048194          401 TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN  480 (558)
Q Consensus       401 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  480 (558)
                      .|..+.+|+.+.+.. .+.......+..+++|+.+.+.++ +.......+               ..+++++.+.+.+ .
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F---------------~~~~~l~~i~~~~-~   68 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF---------------SNCKSLESITFPN-N   68 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT---------------TT-TT-EEEEETS-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee---------------ecccccccccccc-c
Confidence            466677888888875 455555667788888888888764 432222222               2366788888865 4


Q ss_pred             ccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCC
Q 048194          481 FKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLS  544 (558)
Q Consensus       481 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  544 (558)
                      +.......|..+++|+.+.+..+ +.......|.++ .|+.+.+.+ .+.......|.+.++|+
T Consensus        69 ~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   69 LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            44344566777888888888765 553445566676 888888876 44434556677766653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=5.9e-05  Score=68.39  Aligned_cols=100  Identities=24%  Similarity=0.185  Sum_probs=76.2

Q ss_pred             CCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194          405 NCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP  484 (558)
Q Consensus       405 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  484 (558)
                      +.+.++|++.++.+.++  .....|+.|++|.|+-|.|+..                 +.+..++.|++|+|..|.|...
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-----------------~pl~rCtrLkElYLRkN~I~sl   78 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-----------------APLQRCTRLKELYLRKNCIESL   78 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-----------------hhHHHHHHHHHHHHHhcccccH
Confidence            44678899999999743  3567899999999999999843                 3345589999999999998753


Q ss_pred             C-chhhcccCCCCeeeCcCCcCcccccc-----cccCCCCCCeec
Q 048194          485 I-LEDVGLLKSLYGLNLSHNALTGSIPS-----SFGNLKRLESLD  523 (558)
Q Consensus       485 ~-~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~  523 (558)
                      . ..-+.++|+|+.|.|..|.=.+..+.     -+.-+++|++||
T Consensus        79 dEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   79 DELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            2 23467889999999999976655443     245678888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.91  E-value=0.00053  Score=62.11  Aligned_cols=16  Identities=31%  Similarity=0.266  Sum_probs=7.1

Q ss_pred             CCCCCCCCEEecCCCc
Q 048194          300 LKNQSQLQYLYLSENQ  315 (558)
Q Consensus       300 ~~~~~~L~~L~l~~n~  315 (558)
                      +..+.+|..|++.+|.
T Consensus       112 l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCS  127 (260)
T ss_pred             hhhhcchhhhhcccCC
Confidence            3344444444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.13  E-value=0.0012  Score=68.86  Aligned_cols=114  Identities=24%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             CCCCCCEEECCCCC-CCCCccchhhcCCCCCCEEeCcCC-cCccCCC----hhccCCCCCcEEeccccc-ccccccchhh
Q 048194           89 SLHYLRSLNLARTS-FNGTQISSKLANISSLTYLNLSDA-GFAGQIP----VQISRMARLVALDFSFNQ-FSGSISSIRW  161 (558)
Q Consensus        89 ~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-~~~~~~~~~~  161 (558)
                      .++.|+.|.+..+. +....+-.....+++|+.|+++++ ......+    .....+++|+.|+++++. +++..-....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46888888888763 333222345667889999999873 2221222    233457889999999888 5533322123


Q ss_pred             cCCCCccEEEccCCc-cCccCCccc-cCCCCCCEEeCccccCC
Q 048194          162 EHLLNLVCAVLSDNS-LDGSIPRSM-FEFPMLQQLQLANNQFG  202 (558)
Q Consensus       162 ~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~~~  202 (558)
                      ..+++|++|.+.++. +++..-..+ ..++.|++|+++++...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            448899999988776 454333333 36788999999988654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.18  E-value=0.0069  Score=32.56  Aligned_cols=18  Identities=67%  Similarity=0.875  Sum_probs=8.0

Q ss_pred             CCeecCCCCcCcccchhhh
Q 048194          519 LESLDLSMNNLSRAIPSQL  537 (558)
Q Consensus       519 L~~L~L~~N~l~~~~~~~~  537 (558)
                      |+.|||++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.88  E-value=0.0088  Score=32.13  Aligned_cols=19  Identities=68%  Similarity=0.770  Sum_probs=9.4

Q ss_pred             CCeeeCcCCcCccccccccc
Q 048194          495 LYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       495 L~~L~l~~n~l~~~~~~~l~  514 (558)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.70  E-value=0.0077  Score=62.83  Aligned_cols=234  Identities=22%  Similarity=0.151  Sum_probs=124.5

Q ss_pred             CCEEEEEcCCCCcccc--ccCcccccCCCCCCEEECCCC-CCCCC-c--cchhhcCCCCCCEEeCcCCc-CccCCChhcc
Q 048194           65 GHVIGLDLSTESISGG--IENAAILFSLHYLRSLNLART-SFNGT-Q--ISSKLANISSLTYLNLSDAG-FAGQIPVQIS  137 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~L~~n-~~~~~-~--~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~  137 (558)
                      +.++.+.+.++.-...  ...  .....++|+.|+++++ ..... .  .......+++|+.|+++++. +++..-..++
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDA--LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhhhcccccCChhhHHH--HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4555566655432211  122  4667889999999873 22111 0  12344567889999999887 6645444444


Q ss_pred             -CCCCCcEEeccccc-ccccccchhhcCCCCccEEEccCCccC--ccCCccccCCCCCCEEeCccccCCCCCCccccccc
Q 048194          138 -RMARLVALDFSFNQ-FSGSISSIRWEHLLNLVCAVLSDNSLD--GSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS  213 (558)
Q Consensus       138 -~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  213 (558)
                       .+++|++|.+.++. +++..-......++.|++|+++++...  ..+.....++++|+.|.+........+...   ..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~---~l  342 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDL---SL  342 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHH---HH
Confidence             38899999988887 564442214567888999999988753  112233345676666655443210000000   00


Q ss_pred             cchhhhhc--hhhhcccCCCCCCCEEEcccccCCcccC-hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecC
Q 048194          214 SALDTQIK--RVYSCLGLRTQKLTPLLLSSNNLNGTVQ-LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA  290 (558)
Q Consensus       214 ~~l~~li~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  290 (558)
                      ..... +.  .........+++++.+.+..+... ... ...+..++.|+ ..+...          ......++.|++.
T Consensus       343 ~~~~~-~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~~L~l~  409 (482)
T KOG1947|consen  343 SGLLT-LTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLT-ESLELR----------LCRSDSLRVLNLS  409 (482)
T ss_pred             HHhhc-cCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccc-hHHHHH----------hccCCccceEecc
Confidence            00000 00  011112256677777777776632 322 23444555552 111111          1112227888888


Q ss_pred             CCCCCCCCC---CCC-CCCCCEEecCCCcc
Q 048194          291 SCKLREIPN---LKN-QSQLQYLYLSENQI  316 (558)
Q Consensus       291 ~n~l~~l~~---~~~-~~~L~~L~l~~n~l  316 (558)
                      .+.......   ... +..++.+++.++..
T Consensus       410 ~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  410 DCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cCccccccchHHHhhhhhccccCCccCccc
Confidence            886554433   222 66778888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.85  E-value=0.0023  Score=56.79  Aligned_cols=83  Identities=18%  Similarity=0.202  Sum_probs=37.6

Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEe
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLN  547 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  547 (558)
                      +...+.||++.|++.. ....|+-+..|+.|+++.|++. ..|..++....+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3444444444444432 2233344444444455544444 44444444444444444444443 3444444444444444


Q ss_pred             CcCCcC
Q 048194          548 LSYNQL  553 (558)
Q Consensus       548 l~~n~l  553 (558)
                      +-+|++
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.67  E-value=0.00044  Score=70.58  Aligned_cols=123  Identities=23%  Similarity=0.271  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCCEEECcCCcCCc----cCCcccc----cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhc
Q 048194          398 LPDTFPRNCLLQTLDLNGNRPQG----TVPKSIA----KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILN  469 (558)
Q Consensus       398 ~p~~~~~~~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~  469 (558)
                      +...+...+.++.++++.|.+..    .++..+.    ...++++|.+.+|.++...-..           -.......+
T Consensus       164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~-----------l~~~l~~~~  232 (478)
T KOG4308|consen  164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL-----------LDEVLASGE  232 (478)
T ss_pred             HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH-----------HHHHHhccc
Confidence            33444455667777777776632    1222333    3556777777777665110000           001112223


Q ss_pred             c-ceEEECCCCccccc----Cchhhccc-CCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcc
Q 048194          470 I-FTSIDFSTNNFKGP----ILEDVGLL-KSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       470 ~-L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      . +..+++..|.+.+.    ..+.+..+ +.++.++++.|.|+..    +...+..++.++.+.+++|.+..
T Consensus       233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3 45566666666533    12233344 5556777777766543    23344555666777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.35  E-value=0.051  Score=26.99  Aligned_cols=15  Identities=27%  Similarity=0.463  Sum_probs=5.3

Q ss_pred             CCCEEecCCCCCCCC
Q 048194          283 MLELLNLASCKLREI  297 (558)
Q Consensus       283 ~L~~L~l~~n~l~~l  297 (558)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.70  E-value=0.022  Score=49.76  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             CCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccc-cCchhhc-ccCCCCeeeCcCC-cCcc
Q 048194          431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKG-PILEDVG-LLKSLYGLNLSHN-ALTG  507 (558)
Q Consensus       431 ~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~-~l~~L~~L~l~~n-~l~~  507 (558)
                      .++.++.++..|..+               ..+.++.++.++.|.+.+|.--+ -...-++ -.++|+.|++++| +||.
T Consensus       102 ~IeaVDAsds~I~~e---------------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE---------------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             eEEEEecCCchHHHH---------------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            466777777666532               34445557777777777775221 1111222 2578888888877 4776


Q ss_pred             cccccccCCCCCCeecCCCCc
Q 048194          508 SIPSSFGNLKRLESLDLSMNN  528 (558)
Q Consensus       508 ~~~~~l~~l~~L~~L~L~~N~  528 (558)
                      ..-..+..+++|+.|.+.+=.
T Consensus       167 ~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  167 GGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hHHHHHHHhhhhHHHHhcCch
Confidence            667777888888888877643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=0.034  Score=48.62  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhh-hhhccceEEECCCC-cccc
Q 048194          406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ-KILNIFTSIDFSTN-NFKG  483 (558)
Q Consensus       406 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n-~l~~  483 (558)
                      ..++.+|-++..+..+..+.+..+++++.|.+.+|.--+              ...++.. ...++|+.|++++| +||.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--------------D~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--------------DWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--------------hHHHHHhcccccchheeeccCCCeech
Confidence            448899999999988888888899999999999886321              1112211 23789999999988 4777


Q ss_pred             cCchhhcccCCCCeeeCcCCc
Q 048194          484 PILEDVGLLKSLYGLNLSHNA  504 (558)
Q Consensus       484 ~~~~~~~~l~~L~~L~l~~n~  504 (558)
                      .....+..+++|+.|.|.+=.
T Consensus       167 ~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  167 GGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hHHHHHHHhhhhHHHHhcCch
Confidence            677788889999999887543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.31  E-value=0.0086  Score=53.30  Aligned_cols=84  Identities=14%  Similarity=0.073  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .+++.||++.+.+.....   .+.-++.|..|+++.|.+.-  +|..++....++.+++..|... ..|.+++..+++++
T Consensus        42 kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            688888888887754333   36667788888888887754  6777888888888888888877 77888888888888


Q ss_pred             Eecccccccc
Q 048194          145 LDFSFNQFSG  154 (558)
Q Consensus       145 L~L~~n~~~~  154 (558)
                      +++..|.+..
T Consensus       116 ~e~k~~~~~~  125 (326)
T KOG0473|consen  116 NEQKKTEFFR  125 (326)
T ss_pred             hhhccCcchH
Confidence            8888887663

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.04  E-value=0.078  Score=29.07  Aligned_cols=17  Identities=41%  Similarity=0.501  Sum_probs=7.3

Q ss_pred             CCCCeecCCCCcCcccc
Q 048194          517 KRLESLDLSMNNLSRAI  533 (558)
Q Consensus       517 ~~L~~L~L~~N~l~~~~  533 (558)
                      ++|++|+|++|++++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            34555555555554433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.32  E-value=0.0035  Score=64.12  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             CCCCEEecCCCCCC-----CCCC-CCCCCCCCEEecCCCccccc
Q 048194          282 PMLELLNLASCKLR-----EIPN-LKNQSQLQYLYLSENQISRE  319 (558)
Q Consensus       282 ~~L~~L~l~~n~l~-----~l~~-~~~~~~L~~L~l~~n~l~~~  319 (558)
                      +.++.+++..|.++     .+.. +..++.++++.++.|.+...
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            44566666666665     2222 55666777888887776543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.68  E-value=0.54  Score=26.21  Aligned_cols=13  Identities=46%  Similarity=0.641  Sum_probs=5.8

Q ss_pred             CCCeeeCcCCcCc
Q 048194          494 SLYGLNLSHNALT  506 (558)
Q Consensus       494 ~L~~L~l~~n~l~  506 (558)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.68  E-value=0.54  Score=26.21  Aligned_cols=13  Identities=46%  Similarity=0.641  Sum_probs=5.8

Q ss_pred             CCCeeeCcCCcCc
Q 048194          494 SLYGLNLSHNALT  506 (558)
Q Consensus       494 ~L~~L~l~~n~l~  506 (558)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.51  E-value=0.76  Score=25.60  Aligned_cols=22  Identities=45%  Similarity=0.569  Sum_probs=15.5

Q ss_pred             CCCCCeecCCCCcCcccchhhh
Q 048194          516 LKRLESLDLSMNNLSRAIPSQL  537 (558)
Q Consensus       516 l~~L~~L~L~~N~l~~~~~~~~  537 (558)
                      +++|+.|+|++|+++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678999999999884433333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.51  E-value=0.76  Score=25.60  Aligned_cols=22  Identities=45%  Similarity=0.569  Sum_probs=15.5

Q ss_pred             CCCCCeecCCCCcCcccchhhh
Q 048194          516 LKRLESLDLSMNNLSRAIPSQL  537 (558)
Q Consensus       516 l~~L~~L~L~~N~l~~~~~~~~  537 (558)
                      +++|+.|+|++|+++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678999999999884433333

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=84.56  E-value=9.9  Score=38.25  Aligned_cols=155  Identities=19%  Similarity=0.020  Sum_probs=84.8

Q ss_pred             ccCCCCC--CCCCCC--ccceEeC-------CCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchh
Q 048194           43 KLMQWRQ--STDCCD--WSGVDCD-------EAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK  111 (558)
Q Consensus        43 ~~~~w~~--~~~~c~--~~~~~c~-------~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  111 (558)
                      ..+.|-.  +.+.|+  |+-.+-.       ...+++.++++.+.+...++....-..++    +.++.+..++..+...
T Consensus       132 ~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l  207 (553)
T KOG4242|consen  132 SPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKL  207 (553)
T ss_pred             cccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHh
Confidence            3566755  456676  5432221       22678889999888876665411111222    5555555544311110


Q ss_pred             h--cCCCCCCEEeCcCCcCccCCChhccC---CCCCcEEecccccccccc--cchhhcCCCCccEEEccCCccCc----c
Q 048194          112 L--ANISSLTYLNLSDAGFAGQIPVQISR---MARLVALDFSFNQFSGSI--SSIRWEHLLNLVCAVLSDNSLDG----S  180 (558)
Q Consensus       112 ~--~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~----~  180 (558)
                      .  ..=..+.+++++.|...+.+|..+..   -.-++.++.+...+.-..  ..+..+.-+.++..+++.|....    +
T Consensus       208 ~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~E  287 (553)
T KOG4242|consen  208 LIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEE  287 (553)
T ss_pred             hhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccc
Confidence            0  11135788999999888778765432   245777777776554222  33345556677777777765431    1


Q ss_pred             CCcc----ccCCCCCCEEeCccccCC
Q 048194          181 IPRS----MFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       181 ~~~~----l~~l~~L~~L~l~~n~~~  202 (558)
                      ++..    +..-+++ +|++..++.-
T Consensus       288 gg~~~k~~fS~~~sg-hln~~~~~~p  312 (553)
T KOG4242|consen  288 GGGAEKDTFSPDPSG-HLNSRPRYTP  312 (553)
T ss_pred             cccccccccCcCccc-ccccccccCc
Confidence            2222    2233556 7777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	558
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-18
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-16
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 238/570 (41%), Gaps = 143/570 (25%)
Query: 44  LMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG------------------IENAA 85
           L  W  + + C + GV C +   V  +DLS++ ++ G                  + N+ 
Sbjct: 30  LPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 88
Query: 86  ILFSLH------YLRSLNLARTSFNGTQIS-SKLANISSLTYLNLSD--AGFAGQIPVQI 136
           I  S+        L SL+L+R S +G   + + L + S L +LN+S     F G++   +
Sbjct: 89  INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 137 SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL 196
            ++  L  LD S N  SG+          N+V  VLSD   +            L+ L +
Sbjct: 149 -KLNSLEVLDLSANSISGA----------NVVGWVLSDGCGE------------LKHLAI 185
Query: 197 ANNQFGGSIP-------RFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXXXXXXXGTVQ 249
           + N+  G +         F + SS+   T I  +  C  L+                   
Sbjct: 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ------------------- 226
Query: 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQY 308
                       LD+S N L+ D  SR  S    L+LLN++S + +  IP L  +S LQY
Sbjct: 227 -----------HLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQY 273
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY------------------- 349
           L L+EN+ + EIP+++       L  L+LS N   G   P+                   
Sbjct: 274 LSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 350 --------SIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGT 397
                    +  L+ +DL  N+  G + +    L  + + +D S+NNF+  I        
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-------- 384
Query: 398 LPDTF--PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSL----- 450
           LP+    P+N L Q L L  N   G +P +++ C  L  L+L  N  S   P SL     
Sbjct: 385 LPNLCQNPKNTL-QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 451 -YDAPITIKGLDIKL-QKILNIFT--SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
             D  + +  L+ ++ Q+++ + T  ++    N+  G I   +    +L  ++LS+N LT
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 507 GSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
           G IP   G L+ L  L LS N+ S  IP++
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 185/465 (39%), Gaps = 131/465 (28%)
Query: 128 FAGQIPVQ-ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL----SDNSLDGSIP 182
           F+G++P+  + +M  L  LD SFN+FSG +     E L NL  ++L    S N+  G I 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 183 RSMFEFP--MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXX 240
            ++ + P   LQ+L L NN F G IP   +  S  +   +   Y                
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY---------------- 429
Query: 241 XXXXXGTVQLDKILSLGNLAKL-DLS-YNSLAVDESSRNYSFSPMLELLNLASCKLR-EI 297
                GT+      SLG+L+KL DL  + ++   E  +   +   LE L L    L  EI
Sbjct: 430 ---LSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 298 PN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA--- 353
           P+ L N + L ++ LS N+++ EIP WI R+    L  L LS+N   G     +IPA   
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--NLAILKLSNNSFSG-----NIPAELG 535
Query: 354 ----LRFIDLISNQLRGNI--------HQLPNNPI----YIDFSNNNFTS---------- 387
               L ++DL +N   G I         ++  N I    Y+   N+              
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 388 ------------------SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC 429
                             +I +    G    TF  N  +  LD++ N   G +PK I   
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 430 KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV 489
             L +LNLG+N  S   P                                       ++V
Sbjct: 656 PYLFILNLGHNDISGSIP---------------------------------------DEV 676
Query: 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
           G L+ L  L+LS N L G IP +   L  L  +DLS NNLS  IP
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 238/570 (41%), Gaps = 143/570 (25%)
Query: 44  LMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG------------------IENAA 85
           L  W  + + C + GV C +   V  +DLS++ ++ G                  + N+ 
Sbjct: 27  LPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH 85
Query: 86  ILFSLH------YLRSLNLARTSFNGTQIS-SKLANISSLTYLNLSD--AGFAGQIPVQI 136
           I  S+        L SL+L+R S +G   + + L + S L +LN+S     F G++   +
Sbjct: 86  INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 137 SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL 196
            ++  L  LD S N  SG+          N+V  VLSD   +            L+ L +
Sbjct: 146 -KLNSLEVLDLSANSISGA----------NVVGWVLSDGCGE------------LKHLAI 182
Query: 197 ANNQFGGSIP-------RFSNASSSALDTQIKRVYSCLGLRTQKLTPXXXXXXXXXGTVQ 249
           + N+  G +         F + SS+   T I  +  C  L+                   
Sbjct: 183 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ------------------- 223
Query: 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQY 308
                       LD+S N L+ D  SR  S    L+LLN++S + +  IP L  +S LQY
Sbjct: 224 -----------HLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQY 270
Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY------------------- 349
           L L+EN+ + EIP+++       L  L+LS N   G   P+                   
Sbjct: 271 LSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 350 --------SIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGT 397
                    +  L+ +DL  N+  G + +    L  + + +D S+NNF+  I        
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-------- 381
Query: 398 LPDTF--PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSL----- 450
           LP+    P+N L Q L L  N   G +P +++ C  L  L+L  N  S   P SL     
Sbjct: 382 LPNLCQNPKNTL-QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 451 -YDAPITIKGLDIKL-QKILNIFT--SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
             D  + +  L+ ++ Q+++ + T  ++    N+  G I   +    +L  ++LS+N LT
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 507 GSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
           G IP   G L+ L  L LS N+ S  IP++
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAE 530

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 37  DPSSSVKLMQWRQSTDCCD--WSGVDCD---EAGHVIGLDLSTESISGGIENAAILFSLH 91
           D  +   L  W  +TDCC+  W GV CD   +   V  LDLS  ++       + L +L 
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 92  YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQ 151
           YL  L +   +     I   +A ++ L YL ++    +G IP  +S++  LV LDFS+N 
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 152 FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML-QQLQLANNQFGGSI-PRFS 209
            SG++       L NLV      N + G+IP S   F  L   + ++ N+  G I P F+
Sbjct: 137 LSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 210 NASSSALD 217
           N + + +D
Sbjct: 196 NLNLAFVD 203

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 48/238 (20%)
Query: 298 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFI 357
           P +   +QL YLY++   +S  IP+++ ++    L  L+ S+N L G   P         
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--LVTLDFSYNALSGTLPP--------- 143
Query: 358 DLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR-NCLLQTLDLNGN 416
                    +I  LPN  + I F  N          ++G +PD++   + L  ++ ++ N
Sbjct: 144 ---------SISSLPN-LVGITFDGNR---------ISGAIPDSYGSFSKLFTSMTISRN 184
Query: 417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476
           R  G +P + A    L  ++L  N           DA + + G D   QKI     S+ F
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASV-LFGSDKNTQKIHLAKNSLAF 235
Query: 477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
                    L  VGL K+L GL+L +N + G++P     LK L SL++S NNL   IP
Sbjct: 236 D--------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	558
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  278 bits (714), Expect = 7e-85
 Identities = 146/555 (26%), Positives = 226/555 (40%), Gaps = 81/555 (14%)

Query: 11  NIAFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGL 70
           +      Q    +   L+  K  L  D +    L  W  + + C + GV C     V  +
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLP-DKNL---LPDWSSNKNPCTFDGVTCR-DDKVTSI 55

Query: 71  DLSTESISGGI-ENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           DLS++ ++ G    ++ L SL  L SL L+ +  NG+   S     +SLT L+LS    +
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLS 113

Query: 130 GQIP--VQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE 187
           G +     +   + L  L+ S N             L +L    LS NS+ G+       
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 188 FPMLQQLQ---LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNL 244
                +L+   ++ N+  G +   S   +                    L  L +SSNN 
Sbjct: 174 SDGCGELKHLAISGNKISGDVD-VSRCVN--------------------LEFLDVSSNNF 212

Query: 245 NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPNLKNQ 303
           +  +    +     L  LD+S N L   + SR  S    L+LLN++S +    IP L   
Sbjct: 213 STGIPF--LGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPL-PL 268

Query: 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQ 363
             LQYL L+EN+ + EIP+++   +   L  L+LS N   G     ++P   F       
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYG-----AVPP--FF------ 314

Query: 364 LRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVP 423
             G+   L      +  S+NNF+  +P DT+   +         L+ LDL+ N   G +P
Sbjct: 315 --GSCSLL----ESLALSSNNFSGELPMDTL-LKMRG-------LKVLDLSFNEFSGELP 360

Query: 424 KSIAKCKM-LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFK 482
           +S+      L  L+L +N FS     +L              Q   N    +    N F 
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNL-------------CQNPKNTLQELYLQNNGFT 407

Query: 483 GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF 542
           G I   +     L  L+LS N L+G+IPSS G+L +L  L L +N L   IP +L  +  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 543 LSYLNLSYNQLEGRF 557
           L  L L +N L G  
Sbjct: 468 LETLILDFNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  271 bits (695), Expect = 3e-82
 Identities = 138/501 (27%), Positives = 205/501 (40%), Gaps = 69/501 (13%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L L+    +G I    +  +   L  L+L+   F G  +     + S L  L LS   F+
Sbjct: 274 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFS 331

Query: 130 GQIPVQ-ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF 188
           G++P+  + +M  L  LD SFN+FSG +         +L+   LS N+  G I  ++ + 
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 189 PM--LQQLQLANNQFGGSIPR-FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245
           P   LQ+L L NN F G IP   SN S                     L  L LS N L+
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSE--------------------LVSLHLSFNYLS 431

Query: 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQ 303
           GT+    + SL  L  L L  N L   E  +   +   LE L L    L  EIP+ L N 
Sbjct: 432 GTIPSS-LGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA-------LRF 356
           + L ++ LS N+++ EIP WI R+    L  L LS+N   G     +IPA       L +
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLE--NLAILKLSNNSFSG-----NIPAELGDCRSLIW 542

Query: 357 IDLISNQLRGNI-HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNG 415
           +DL +N   G I   +         + N           N  +               N 
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSG--KIAANFIAGKRYVYIKNDGMKKECH-------GAGNL 593

Query: 416 NRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSID 475
              QG   + + +       N+ +  +      +                        +D
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF---------------DNNGSMMFLD 638

Query: 476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535
            S N   G I +++G +  L+ LNL HN ++GSIP   G+L+ L  LDLS N L   IP 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 536 QLASLYFLSYLNLSYNQLEGR 556
            +++L  L+ ++LS N L G 
Sbjct: 699 AMSALTMLTEIDLSNNNLSGP 719

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  195 bits (498), Expect = 2e-54
 Identities = 119/472 (25%), Positives = 182/472 (38%), Gaps = 76/472 (16%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           LDLS     G +       S   L SL L+  +F+G      L  +  L  L+LS   F+
Sbjct: 299 LDLSGNHFYGAVPPF--FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 130 GQIPVQISRM-ARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE 187
           G++P  ++ + A L+ LD S N FSG I  ++       L    L +N   G IP ++  
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 188 FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT 247
              L  L L+ N   G+IP                  S LG    KL  L L  N L G 
Sbjct: 417 CSELVSLHLSFNYLSGTIP------------------SSLG-SLSKLRDLKLWLNMLEGE 457

Query: 248 VQLDKILSLGNLAKLDLSYNSL--AVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQ 303
           +   +++ +  L  L L +N L   +     N +    L  ++L++ +L  EIP  +   
Sbjct: 458 I-PQELMYVKTLETLILDFNDLTGEIPSGLSNCT---NLNWISLSNNRLTGEIPKWIGRL 513

Query: 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA---LRFIDLI 360
             L  L LS N  S  IP  +       L  L+L+ N   G     +IPA    +   + 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNLFNG-----TIPAAMFKQSGKIA 566

Query: 361 SNQLRGNI-HQLPNNP----IYIDFSNNNFTSSIPADTVN---------------GTLPD 400
           +N + G     + N+      +   +   F                         G    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 401 TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGL 460
           TF  N  +  LD++ N   G +PK I     L +LNLG+N  S   P  +          
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV---------- 676

Query: 461 DIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512
              L+ +      +D S+N   G I + +  L  L  ++LS+N L+G IP  
Sbjct: 677 -GDLRGL----NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  134 bits (339), Expect = 3e-33
 Identities = 91/340 (26%), Positives = 131/340 (38%), Gaps = 42/340 (12%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L LS   +SG I ++  L SL  LR L L      G  I  +L  + +L  L L      
Sbjct: 423 LHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLT 479

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF 188
           G+IP  +S    L  +  S N+ +G I   I    L NL    LS+NS  G+IP  + + 
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 189 PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV 248
             L  L L  N F G+IP                  + +  ++       +++N + G  
Sbjct: 538 RSLIWLDLNTNLFNGTIP------------------AAMFKQS-----GKIAANFIAGKR 574

Query: 249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS-PMLELLNLASCKLR-EIPN-LKNQSQ 305
            +  I + G   +   + N L                   N+ S            N   
Sbjct: 575 YVY-IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 306 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFI---DLISN 362
           + +L +S N +S  IP  I   S+  L  LNL HN + G   P  +  LR +   DL SN
Sbjct: 634 MMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSN 690

Query: 363 QLRGNI-HQLPN--NPIYIDFSNNNFTSSIPADTVNGTLP 399
           +L G I   +        ID SNNN +  IP      T P
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 65  GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLS 124
           G ++ LD+S   +SG I     + S+ YL  LNL     +G  I  ++ ++  L  L+LS
Sbjct: 632 GSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLS 688

Query: 125 DAGFAGQIPVQISRMARLVALDFSFNQFSGSI 156
                G+IP  +S +  L  +D S N  SG I
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (486), Expect = 2e-53
 Identities = 80/546 (14%), Positives = 169/546 (30%), Gaps = 62/546 (11%)

Query: 35  TFDPSSSVKLMQWRQSTDCCDWS---GVDCDEAGHVIGLDLSTESISGGIENAAILFSLH 91
           +     +     W  + +   W    GV  +  G V GL L     SG + +A  +  L 
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA--IGQLT 105

Query: 92  YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQ 151
            L  L L        +       IS+                  +    R    D   + 
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 152 FSGSISSIRWEHLLNLVCAV----LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR 207
            +        +    +           N++   + +++     L+Q  + N+ F      
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENIC 224

Query: 208 FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYN 267
            +  + ++   Q  +         + LT + + +      +    + +L  +  ++++ N
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACN 283

Query: 268 SLAVDESSRNY-------SFSPMLELLNLASCKLREIP---NLKNQSQLQYLYLSENQIS 317
                E  ++             ++++ +    L+  P   +L+   +L  L    NQ+ 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 318 REIPNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFIDLISNQLRG-----NIHQ 370
            ++P +    S + L  LNL++N +             +  +    N+L+      +   
Sbjct: 344 GKLPAF---GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 371 LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK 430
           +      IDFS N   S          L  T  +   + +++L+ N+      +  +   
Sbjct: 401 VSV-MSAIDFSYNEIGSVDG--KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE-DV 489
            L  +NL  N  ++    SL D     K     L        SID   N       +   
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNT-YLLT-------SIDLRFNKLTKLSDDFRA 509

Query: 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS 549
             L  L G++LS+N+ +   P+   N   L+   +                      +  
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQ 550

Query: 550 YNQLEG 555
            N+   
Sbjct: 551 GNRTLR 556

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (444), Expect = 1e-47
 Identities = 88/502 (17%), Positives = 170/502 (33%), Gaps = 53/502 (10%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLN-LARTSFNGTQISSKLANISSLTYLNLSDAGF 128
            DL  + I+   +  +I  S         + + S N T +S  +  ++ L    + ++ F
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF 218

Query: 129 AGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF 188
             +   +          +  + Q   +    +W++L +L    + +      +P  +   
Sbjct: 219 VAENICEAWEN-----ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 189 PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV 248
           P +Q + +A N+         +  + A     +           K+  + +  NNL    
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGE-----------KIQIIYIGYNNLKTFP 321

Query: 249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQL 306
               +  +  L  L+  YN L        +     L  LNLA  ++ EIP        Q+
Sbjct: 322 VETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 307 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY--SIPA-------LRFI 357
           + L  + N++   IPN     SV  +  ++ S+N +          +         +  I
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 358 DLISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414
           +L +NQ+     +L +       I+   N  T  IP +++     + F    LL ++DL 
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKD-ENENFKNTYLLTSIDLR 496

Query: 415 GNRPQGTVPKSIAKCKM--LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFT 472
            N+    +        +  L  ++L  N FS KFP                L+    I  
Sbjct: 497 FNKLTK-LSDDFRATTLPYLVGIDLSYNSFS-KFPTQP--------LNSSTLKG-FGIRN 545

Query: 473 SIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA 532
             D   N       E + L  SL  L +  N +   +         +  LD+  N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISI 602

Query: 533 IPSQLASLYFLSYLNLSYNQLE 554
             S +          L Y++ +
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  119 bits (300), Expect = 1e-28
 Identities = 66/437 (15%), Positives = 132/437 (30%), Gaps = 76/437 (17%)

Query: 87  LFSLHYLRSLNLARTSFNGTQISSK------------------LANISSLTYLNLSDAGF 128
           +  L  LR   +  + F    I                       N+  LT + + +   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 129 AGQIPVQISRMARLVALDFSFNQFSGSISSIR-WEHLLNLVCAV------LSDNSL-DGS 180
             ++P  +  +  +  ++ + N+          W+ L +           +  N+L    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 181 IPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS-SALD---TQIKRVYSCLGLRTQKLTP 236
           +  S+ +   L  L+   NQ  G +P F +    ++L+    QI  + +     T+++  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 237 LLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM---------LELL 287
           L  + N L     +    S+  ++ +D SYN +    S    +F P+         +  +
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI---GSVDGKNFDPLDPTPFKGINVSSI 438

Query: 288 NLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSV-----VGLHCLNLSHN 340
           NL++ ++ + P       S L  + L  N ++    N +   +        L  ++L  N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 341 FLVGFQAPYSI---PALRFIDLISNQLRG---NIHQLPN-----NPIYIDFSNNNFTSSI 389
            L      +     P L  IDL  N                        D   N      
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 390 PADTVN--------------GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVL 435
           P                     + +    N  +  LD+  N         +       + 
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 436 NLGNNQFSDKFPCSLYD 452
            L  ++  D   C   D
Sbjct: 617 MLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 35/184 (19%)

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           +  L L G    G VP +I +   LEVL LG++                    + K +  
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 468 LNIFTSI---------------DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512
           ++   +                  +++  +  I +   +      +    N +T  +  +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA 201

Query: 513 FGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY-------------------LNLSYNQL 553
              L +L    +  +        +        Y                   + +     
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 554 EGRF 557
             + 
Sbjct: 262 LTKL 265

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 7/91 (7%)

Query: 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG----SIPSSFGNLKRLESLDLSMN 527
           T +        G + + +G L  L  L L  +          P         E       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 528 NLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558
           +  +             + +L  + +    Q
Sbjct: 144 HYQKTFVDYDPRE---DFSDLIKDCINSDPQ 171

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (488), Expect = 1e-52
 Identities = 87/551 (15%), Positives = 177/551 (32%), Gaps = 56/551 (10%)

Query: 38  PSSSVKLMQWRQSTDCCDWS---GVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLR 94
            ++++  + W  + +   W    GVD D  G V GL L+     G + +A  +  L  L+
Sbjct: 293 INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA--IGQLTELK 350

Query: 95  SLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSG 154
            L+    S   +        ++                 + +    RL   D   +  + 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 155 --SISSIRWEHLLNLVCAVLSDNSLD-GSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNA 211
              +  I+ +  ++L    + + +     I +++     LQ +  AN+ F          
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470

Query: 212 SSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV 271
            +++   +            + LT + L +      +  D +  L  L  L+++ N    
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGIS 529

Query: 272 DESSRNYSFS--------PMLELLNLASCKLREIP---NLKNQSQLQYLYLSENQISREI 320
               +             P +++  +    L E P   +L+   +L  L    N++   +
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL 588

Query: 321 PNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI----PALRFIDLISNQLRG-----NIHQL 371
             +    + V L  L L +N +     P         +  +    N+L+      N   +
Sbjct: 589 EAF---GTNVKLTDLKLDYNQIEEI--PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKM 431
                 +DFS N   S    +                 T+ L+ N  Q    +  A    
Sbjct: 644 YV-MGSVDFSYNKIGS-EGRNISCSMDDYKGIN---ASTVTLSYNEIQKFPTELFATGSP 698

Query: 432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKG-PILEDVG 490
           +  + L NN  +     SL       K     L        +ID   N            
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNT-YLLT-------TIDLRFNKLTSLSDDFRAT 750

Query: 491 LLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM------NNLSRAIPSQLASLYFLS 544
            L  L  +++S+N  + S P+   N  +L++  +        N + R  P+ + +   L 
Sbjct: 751 TLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 545 YLNLSYNQLEG 555
            L +  N +  
Sbjct: 810 QLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  126 bits (318), Expect = 1e-30
 Identities = 75/486 (15%), Positives = 143/486 (29%), Gaps = 99/486 (20%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           +  +    +          +                       +N+  LT + L +    
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQY--------ENEELSWSNLKDLTDVELYNCPNM 504

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
            Q+P  +  +  L +L+ + N+                        +    +       P
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGIS----------------AAQLKADWTRLADDEDTGP 548

Query: 190 MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ 249
            +Q   +  N      P  ++AS   +                KL  L    N +     
Sbjct: 549 KIQIFYMGYNNLE-EFP--ASASLQKM---------------VKLGLLDCVHNKVR---H 587

Query: 250 LDKILSLGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPN---LKNQSQ 305
           L+   +   L  L L YN +  + E     +F+  +E L  +  KL+ IPN    K+   
Sbjct: 588 LEAFGTNVKLTDLKLDYNQIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 306 LQYLYLSENQIS---REIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLI 360
           +  +  S N+I    R I   +     +    + LS+N +  F      +   +  I L 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 361 SNQLRG---NIHQLPNNPI-------YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQT 410
           +N +     N  +  +           ID   N  TS +  D    TLP        L  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY-------LSN 757

Query: 411 LDLNGNRPQGTVPKSIAKCKMLEVLNL------GNNQFSDKFPCSLYDAPITIKGLDIKL 464
           +D++ N    + P        L+   +        N+   ++P  +   P         L
Sbjct: 758 MDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP--------SL 808

Query: 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
            ++          +N+ +     D  L   LY L+++ N       +S           L
Sbjct: 809 IQL-------QIGSNDIRKV---DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 525 SMNNLS 530
             +   
Sbjct: 859 LYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (281), Expect = 5e-26
 Identities = 55/426 (12%), Positives = 124/426 (29%), Gaps = 63/426 (14%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD---- 125
            +          E +    +L  L  + L         +   L ++  L  LN++     
Sbjct: 472 ANSDYAKQYENEELS--WSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGI 528

Query: 126 -----AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS 180
                     ++        ++      +N      +S   + ++ L       N +   
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--R 586

Query: 181 IPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRT-QK 233
              +      L  L+L  NQ    IP    A +  ++       ++K + +    ++   
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 234 LTPLLLSSNNLNG----TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELL 287
           +  +  S N +                 N + + LSYN +   +      F+    +  +
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI---QKFPTELFATGSPISTI 702

Query: 288 NLASCKLREIPN---------LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 338
            L++  +  IP           KN   L  + L  N+++  + +     ++  L  +++S
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 339 HNFLVGF-QAPYSIPALRFIDLISNQLRGNIHQLPNNP---------IYIDFSNNNFTSS 388
           +N    F   P +   L+   +   +       L   P         I +   +N+    
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK- 820

Query: 389 IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPC 448
                    + +       L  LD+  N        S+       +  L  ++  D   C
Sbjct: 821 ---------VDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869

Query: 449 SLYDAP 454
                 
Sbjct: 870 DALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 29/209 (13%), Positives = 62/209 (29%), Gaps = 37/209 (17%)

Query: 384 NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
           N+  +   D            N  +  L L G   +G VP +I +   L+VL+ G +  +
Sbjct: 301 NWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET 360

Query: 444 DKFPCSLYDAPITIKGLDIKLQKILNIFTSI----------------DFSTNNFKGPILE 487
                   D  +T    + +  +I   +  +                  + N    PI +
Sbjct: 361 V-SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS----------------- 530
           D  +      +    N +T  I  +   L +L+ +  + +  +                 
Sbjct: 420 DSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

Query: 531 --RAIPSQLASLYFLSYLNLSYNQLEGRF 557
                    ++L  L+ + L       + 
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQL 507

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (468), Expect = 4e-51
 Identities = 93/510 (18%), Positives = 164/510 (32%), Gaps = 58/510 (11%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           LDLS   I    + A    SL +L +L L              + +SSL  L   +   A
Sbjct: 57  LDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLA 113

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
                 I  +  L  L+ + N          + +L NL    LS N +       +    
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 190 MLQ----QLQLANNQFGGSIP--------RFSNASSSALDTQIKRVYSCLGLRTQKLTPL 237
            +      L L+ N      P              ++     + +     GL   ++  L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT-CIQGLAGLEVHRL 232

Query: 238 LLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS-----PMLELLNLASC 292
           +L      G ++     +L  L  L +    LA  +   +           +   +L S 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 293 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIP 352
            +  + +       Q+L L   +  +     +  +       L  + N      +   +P
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLP 347

Query: 353 ALRFIDLISNQL--RGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407
           +L F+DL  N L  +G   Q         Y+D S N             T+   F     
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----------TMSSNFLGLEQ 397

Query: 408 LQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
           L+ LD   +  +     S+    + L  L++ +      F                 L+ 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--------SLE- 448

Query: 467 ILNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525
                  +  + N+F+   L D+   L++L  L+LS   L    P++F +L  L+ L++S
Sbjct: 449 ------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 526 MNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            NN           L  L  L+ S N +  
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (362), Expect = 1e-36
 Identities = 81/475 (17%), Positives = 136/475 (28%), Gaps = 74/475 (15%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
            S   L+LS                 L  LD S  +         ++ L +L   +L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGN 86

Query: 176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR-FSNASSSALDTQIKRVYSCLGLRTQKL 234
            +      +      LQ+L                +  +                    L
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--------------------L 126

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL------LN 288
             L ++ N +      +   +L NL  LDLS N +   +S        + ++      L+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI---QSIYCTDLRVLHQMPLLNLSLD 183

Query: 289 LASCKLREI-PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA 347
           L+   +  I P    + +L  L L  N  S  +     +  + GL    L          
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGN 242

Query: 348 PYSIPA---------------LRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD 392
                                L ++D   + +    + L N        +      +   
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV-SSFSLVSVTI-ERVKDF 300

Query: 393 TVNGTLPD---------TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
           + N               FP   L     L     +G    S      LE L+L  N  S
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 444 DKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHN 503
            K  C       +  G    L+        +D S N     +  +   L+ L  L+  H+
Sbjct: 361 FKGCC-----SQSDFGTT-SLK-------YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406

Query: 504 ALTGSIPSS-FGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF 557
            L      S F +L+ L  LD+S  +   A       L  L  L ++ N  +  F
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  133 bits (336), Expect = 3e-33
 Identities = 87/495 (17%), Positives = 157/495 (31%), Gaps = 91/495 (18%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           LDLS   ++     A   F    L  L L     +   + + +  ++ L    L    F 
Sbjct: 182 LDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 130 GQIPVQ------ISRMARLVALDFSFNQFSGSISSIR--WEHLLNLVCAVLSDNSLDGSI 181
            +  ++      +  +  L   +F        +  I   +  L N+    L   +++   
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 182 PRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSS 241
             S       Q L+L N +FG                               L  L  +S
Sbjct: 299 DFSYN--FGWQHLELVNCKFGQFPTLKLK----------------------SLKRLTFTS 334

Query: 242 NNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS-PMLELLNLASCKLREIP-N 299
           N           + L +L  LDLS N L+         F    L+ L+L+   +  +  N
Sbjct: 335 NKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFI 357
                QL++L    + + +     ++  S+  L  L++SH             + +L  +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 358 DLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNR 417
            +                     + N+F  +          PD F     L  LDL+  +
Sbjct: 451 KM---------------------AGNSFQENFL--------PDIFTELRNLTFLDLSQCQ 481

Query: 418 PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFS 477
            +   P +      L+VLN+ +N F                     LQ        +D+S
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--------SLQ-------VLDYS 526

Query: 478 TNNFKGPILEDVG-LLKSLYGLNLSHNALTGSIPSS--FGNLKRLESLDLSMNNLSRAIP 534
            N+      +++     SL  LNL+ N    +         +K    L + +  +  A P
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 535 SQLASLYFLSYLNLS 549
           S    +  LS LN++
Sbjct: 587 SDKQGMPVLS-LNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 6e-28
 Identities = 81/379 (21%), Positives = 126/379 (33%), Gaps = 72/379 (18%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS 291
              L LS N L   +      S   L  LDLS   +   ++  + ++  +  L  L L  
Sbjct: 30  TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTG 85

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
             ++ +        S LQ L   E  ++      I  +    L  LN++HN +  F+ P 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPE 143

Query: 350 SI---PALRFIDLISNQLRG-------NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399
                  L  +DL SN+++         +HQ+P   + +D S N      P         
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--------- 194

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPK-SIAKCKMLEVLNLGNNQFSDKFP----------- 447
             F +   L  L L  N     V K  I     LEV  L   +F ++             
Sbjct: 195 GAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 448 -CSLYDAPITIKGLDIKLQKILNIF------TSIDFSTNNFKGPILEDVGLLKSLYGLNL 500
            C+L      +  LD  L  I+++F      +S    +   +   ++D         L L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLEL 311

Query: 501 SHNALT-------------------GSIPSSFGNLKRLESLDLSMNNLSR--AIPSQLAS 539
            +                       G    S  +L  LE LDLS N LS           
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 540 LYFLSYLNLSYNQLEGRFQ 558
              L YL+LS+N +     
Sbjct: 372 TTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 4e-17
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 28/181 (15%)

Query: 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVL 435
           I       NF            +PD  P +   + LDL+ N  +     S      L+VL
Sbjct: 10  ITYQCMELNFYK----------IPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 436 NLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSL 495
           +L   +       +              L  +    +++  + N  +   L     L SL
Sbjct: 58  DLSRCEIQTIEDGAYQS-----------LSHL----STLILTGNPIQSLALGAFSGLSSL 102

Query: 496 YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA-IPSQLASLYFLSYLNLSYNQLE 554
             L      L        G+LK L+ L+++ N +    +P   ++L  L +L+LS N+++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 555 G 555
            
Sbjct: 163 S 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (450), Expect = 3e-48
 Identities = 94/512 (18%), Positives = 168/512 (32%), Gaps = 64/512 (12%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L LS   I         +F+   L+ L L+               I  L  L L++    
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLG 208

Query: 130 GQIPVQIS---RMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSM 185
             +  ++        +  L  S +Q S +  ++       NL    LS N+L+     S 
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 186 FEFPMLQQLQLANNQFGGSIPR-FSNASS-------------SALDTQIKRVYSCLGLRT 231
              P L+   L  N              +             S     + ++        
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN---YSFSPMLELLN 288
           + L  L +  N++ G ++ +    L NL  L LS +  ++   +           L +LN
Sbjct: 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 289 LASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
           L   K+ +I +        L+ L L  N+I +E+    WR  +  +  + LS+N  +   
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLT 446

Query: 347 AP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR 404
                 +P+L+ + L    L+                                 P  F  
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDS----------------------------SPSPFQP 478

Query: 405 NCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464
              L  LDL+ N         +   + LE+L+L +N  +               G  I  
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-------RLWKHANPGGPIYF 531

Query: 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
            K L+    ++  +N F    +E    L  L  ++L  N L     S F N   L+SL+L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 525 SMNNLSRAIPSQLA-SLYFLSYLNLSYNQLEG 555
             N ++         +   L+ L++ +N  + 
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  176 bits (449), Expect = 4e-48
 Identities = 102/518 (19%), Positives = 186/518 (35%), Gaps = 53/518 (10%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L L + SI     N         L +L+L+    + T++ +    + +L  L LS+    
Sbjct: 102 LHLMSNSIQKIKNNP--FVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQ 158

Query: 130 GQIP--VQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE 187
                 + I   + L  L+ S NQ         +  +  L    L++  L  S+   +  
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 188 F---PMLQQLQLANNQFGGSIPR-FSNASSSALDT------QIKRVYSCLGLRTQKLTPL 237
                 ++ L L+N+Q   +    F     + L         +  V +       +L   
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 238 LLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN------YSFS--PMLELLNL 289
            L  NN+   +    +  L N+  L+L  +      S  +      +SF     LE LN+
Sbjct: 278 FLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 290 ASCKLREIPN--LKNQSQLQYLYLSENQIS-REIPNWIWR-VSVVGLHCLNLSHNFLVGF 345
               +  I +        L+YL LS +  S R + N  +  ++   LH LNL+ N +   
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 346 QAP--YSIPALRFIDLISNQLRGNIHQLP----NNPIYIDFSNNNFTSSIPADTVNGTLP 399
           ++     +  L  +DL  N++   +         N   I  S N +              
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR--------- 447

Query: 400 DTFPRNCLLQTLDLNGNRPQG--TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITI 457
           ++F     LQ L L     +   + P      + L +L+L NN  ++     + +    +
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKL 506

Query: 458 KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK 517
           + LD++   +  +        +   G  +  +  L  L+ LNL  N         F +L 
Sbjct: 507 EILDLQHNNLARL------WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 518 RLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            L+ +DL +NNL+    S   +   L  LNL  N +  
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 8e-40
 Identities = 87/449 (19%), Positives = 157/449 (34%), Gaps = 63/449 (14%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
           +++T LNL+            +R ++L +LD  FN  S     +  + L  L    L  N
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHN 83

Query: 176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR-FSNASSSALDTQIKRVYSCLGLRTQKL 234
            L     ++      L +L L +N         F    +                    L
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--------------------L 123

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCK 293
             L LS N L+   +L   + L NL +L LS N + A+     +   +  L+ L L+S +
Sbjct: 124 ITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 294 LREIPN--LKNQSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNFLVGFQAPYS 350
           ++E          +L  L+L+  Q+   +   +   ++   +  L+LS++ L        
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST------ 236

Query: 351 IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQT 410
                F+ L    L             +D S NN               D+F     L+ 
Sbjct: 237 TSNTTFLGLKWTNLT-----------MLDLSYNNLNVVG---------NDSFAWLPQLEY 276

Query: 411 LDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNI 470
             L  N  Q     S+     +  LNL  +            +  ++  +D    + L  
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT------KQSISLASLPKIDDFSFQWLKC 330

Query: 471 FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS--IPSSFGNL--KRLESLDLSM 526
              ++   N+  G        L +L  L+LS++  +       +F +L    L  L+L+ 
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 527 NNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           N +S+      + L  L  L+L  N++  
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (371), Expect = 1e-37
 Identities = 89/450 (19%), Positives = 156/450 (34%), Gaps = 96/450 (21%)

Query: 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDN 175
           S    + S      Q+P  +     +  L+ + NQ      ++        L    +  N
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFN 59

Query: 176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR-FSNASSSALDTQIKRVYSCLGLRTQKL 234
           ++    P    + PML+ L L +N+      + F+  ++                    L
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN--------------------L 99

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASC 292
           T L L SN++   ++ +  +   NL  LDLS+N L    S++  +   +  L+ L L++ 
Sbjct: 100 TELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL---SSTKLGTQVQLENLQELLLSNN 155

Query: 293 KLREIP----NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP 348
           K++ +     ++   S L+ L LS NQI    P     +    L  L L++  L      
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG--RLFGLFLNNVQLGP---- 209

Query: 349 YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL- 407
            S+     ++L +  +R            +  SN+  +++            TF      
Sbjct: 210 -SLTEKLCLELANTSIR-----------NLSLSNSQLSTTSN---------TTFLGLKWT 248

Query: 408 -LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            L  LDL+ N        S A    LE   L  N     F  SL+               
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN----------- 297

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
                              +  + L +S    ++S  +L      SF  LK LE L++  
Sbjct: 298 -------------------VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 527 NNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
           N++     +    L  L YL+LS +    R
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  134 bits (340), Expect = 1e-33
 Identities = 77/488 (15%), Positives = 158/488 (32%), Gaps = 68/488 (13%)

Query: 70  LDLSTESISGGI-ENAAILFSLHYLRSLNLARTSFNGTQISS-KLANISSLTYLNLSDAG 127
           L L+   +   + E   +  +   +R+L+L+ +  + T  ++      ++LT L+LS   
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 128 FAGQIPVQISRMARLVALDFSFNQFSGSI-------SSIRWEHLL-NLVCAVLSDNSLDG 179
                    + + +L      +N              ++R+ +L  +     +S  SL  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 180 SIPRSMFEFPMLQQLQLANNQFGGSIPR-FSNASSSALDTQIKRVYSCLGLRTQKLTPLL 238
               S      L+ L + +N   G     F+   +                    L  L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN--------------------LKYLS 359

Query: 239 LSSNNLNGTVQLDKI---LSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCK 293
           LS++  +     ++    L+   L  L+L+ N +       + +FS    LE+L+L   +
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI---SKIESDAFSWLGHLEVLDLGLNE 416

Query: 294 LREIPN---LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
           + +       +    +  +YLS N+  +   N    V    L  L L    L    +  S
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPS 474

Query: 351 I----PALRFIDLISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFP 403
                  L  +DL +N +      +         +D  +NN    +      G       
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LWKHANPGGPIYFLK 533

Query: 404 RNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIK 463
               L  L+L  N       +       L++++LG N  +        +           
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV--------S 585

Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVG-LLKSLYGLNLSHNALTGSIPSSFGNLKRLESL 522
           L+       S++   N       +  G   ++L  L++  N    +  S    +  +   
Sbjct: 586 LK-------SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 523 DLSMNNLS 530
             ++  LS
Sbjct: 639 HTNIPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 405 NCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464
               +  D +  +    VP  +     + VLNL +NQ       +               
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----------Y 48

Query: 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
            ++    TS+D   N       E    L  L  LNL HN L+     +F     L  L L
Sbjct: 49  SQL----TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104

Query: 525 SMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
             N++ +   +       L  L+LS+N L  
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  160 bits (407), Expect = 5e-45
 Identities = 97/359 (27%), Positives = 143/359 (39%), Gaps = 70/359 (19%)

Query: 19  CQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCD--WSGVDCDEAGH---VIGLDLS 73
           C    +  LLQ+K  L  +P++   L  W  +TDCC+  W GV CD       V  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLG-NPTT---LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 74  TESISGGIENAAILFSLHYLRSLNLART-SFNGTQISSKLANISSLTYLNLSDAGFAGQI 132
             ++       + L +L YL  L +    +  G  I   +A ++ L YL ++    +G I
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 133 PVQISRMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML 191
           P  +S++  LV LDFS+N  SG++  SI    L NLV      N + G+IP S   F  L
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 192 QQ-LQLANNQFGGSIPR-FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ 249
              + ++ N+  G IP  F+N +                     L  + LS N L G   
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN---------------------LAFVDLSRNMLEGDA- 213

Query: 250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL 309
                S  N  K+ L+ NSL         +F                +  +     L  L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSL---------AFD---------------LGKVGLSKNLNGL 249

Query: 310 YLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPAL-RFIDLISNQLRGN 367
            L  N+I   +P  + ++    LH LN+S N L G      IP          +    N
Sbjct: 250 DLRNNRIYGTLPQGLTQLK--FLHSLNVSFNNLCG-----EIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (367), Expect = 3e-39
 Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 53/278 (19%)

Query: 284 LELLNLASCKLR---EIPN-LKNQSQLQYLYLS-ENQISREIPNWIWRVSVVGLHCLNLS 338
           +  L+L+   L     IP+ L N   L +LY+   N +   IP  I +++   LH L ++
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYIT 109

Query: 339 HNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTL 398
           H  + G     +IP   F+          I  L    + +DFS N  + ++P      +L
Sbjct: 110 HTNVSG-----AIPD--FL--------SQIKTL----VTLDFSYNALSGTLPPSI--SSL 148

Query: 399 PDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML-EVLNLGNNQFSDKFPCSLYDAPITI 457
           P+       L  +  +GNR  G +P S      L   + +  N+ + K P +  +     
Sbjct: 149 PN-------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN----- 196

Query: 458 KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK 517
                     LN    +D S N  +G      G  K+   ++L+ N+L   +    G  K
Sbjct: 197 ----------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244

Query: 518 RLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            L  LDL  N +   +P  L  L FL  LN+S+N L G
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (349), Expect = 9e-37
 Identities = 73/337 (21%), Positives = 109/337 (32%), Gaps = 103/337 (30%)

Query: 230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 289
           +T ++  L LS  NL     +    SL NL                      P L  L +
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPS--SLANL----------------------PYLNFLYI 83

Query: 290 ASCKL------REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
                        I  L     L YLY++   +S  IP+++ ++    L  L+ S+N L 
Sbjct: 84  GGINNLVGPIPPAIAKLTQ---LHYLYITHTNVSGAIPDFLSQIK--TLVTLDFSYNALS 138

Query: 344 GFQAPYSIPA-------LRFIDLISNQLRGNI----HQLPNNPIYIDFSNNNFTSSIPAD 392
           G     ++P        L  I    N++ G I             +  S N  T  IP  
Sbjct: 139 G-----TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452
                       N  L  +DL+ N  +G         K  + ++L  N  +         
Sbjct: 194 F----------ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----- 238

Query: 453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512
                                               VGL K+L GL+L +N + G++P  
Sbjct: 239 -----------------------------------KVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 513 FGNLKRLESLDLSMNNLSRAIPS--QLASLYFLSYLN 547
              LK L SL++S NNL   IP    L      +Y N
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (271), Expect = 3e-26
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 28/182 (15%)

Query: 378 IDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT--VPKSIAKCKMLEVL 435
            D  N  +          G L DT  +   +  LDL+G        +P S+A    L  L
Sbjct: 31  TDCCNRTWL---------GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 436 NLGN-NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKS 494
            +G  N      P ++            KL ++      +  +  N  G I + +  +K+
Sbjct: 82  YIGGINNLVGPIPPAIA-----------KLTQL----HYLYITHTNVSGAIPDFLSQIKT 126

Query: 495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLS-YLNLSYNQL 553
           L  L+ S+NAL+G++P S  +L  L  +    N +S AIP    S   L   + +S N+L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 554 EG 555
            G
Sbjct: 187 TG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.8 bits (177), Expect = 6e-14
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS--IPSSFGNLKRLESLDLS-MNN 528
            + D     + G + +       +  L+LS   L     IPSS  NL  L  L +  +NN
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 529 LSRAIPSQLASLYFLSYLNLSYNQLEG 555
           L   IP  +A L  L YL +++  + G
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSG 115

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  158 bits (402), Expect = 4e-42
 Identities = 98/510 (19%), Positives = 171/510 (33%), Gaps = 59/510 (11%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           LDLS   I    + A     LH+L +L L           S  + ++SL  L   +   A
Sbjct: 61  LDLSRCEIETIEDKA--WHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLA 117

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF- 188
                 I ++  L  L+ + N          + +L NLV   LS N +  +I  +  +F 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFL 176

Query: 189 ----PMLQQLQLANNQFGGSIPR-FSNASSSALD-------TQIKRV--YSCLGLRTQKL 234
                +   L ++ N       + F       L        + I +    +  GL   +L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASC 292
                         +   +  L ++   +          S     F  +  +  ++LA  
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND-FSDDIVKFHCLANVSAMSLAGV 295

Query: 293 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIP 352
            ++ + ++    + Q L +   Q+ +     +       L  L L+ N         ++P
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF-----LKSLTLTMNKGSISFKKVALP 350

Query: 353 ALRFIDLISNQLR----GNIHQLPNNPI-YIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407
           +L ++DL  N L      +   L  N + ++D S N              +   F     
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII----------MSANFMGLEE 400

Query: 408 LQTLDLNGNRPQGTVPKS-IAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
           LQ LD   +  +     S     + L  L++        F                 L  
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT--------SLNT 452

Query: 467 ILNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525
           +         + N+FK   L +V     +L  L+LS   L       F  L RL+ L++S
Sbjct: 453 L-------KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 526 MNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            NNL     S    LY LS L+ S+N++E 
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 6e-40
 Identities = 84/493 (17%), Positives = 165/493 (33%), Gaps = 53/493 (10%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L      ++        +  L  L+ LN+A    +  ++ +  +N+++L +++LS     
Sbjct: 109 LVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWE--HLLNLVCAVLSDNSLDGSIPRSMFE 187
                 +  +     ++ S +     I  I+ +    + L    L  N    +I ++  +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 188 -FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG 246
               L   +L   +F          +    +  I       GL    +    L+  N   
Sbjct: 227 NLAGLHVHRLILGEF------KDERNLEIFEPSI-----MEGLCDVTIDEFRLTYTNDF- 274

Query: 247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQL 306
           +  + K   L N++ + L+  S+   +   +       + L++  C+L++ P L +   L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFL 330

Query: 307 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA----PYSIPALRFIDLISN 362
           + L L+ N+ S          ++  L  L+LS N L              +LR +DL  N
Sbjct: 331 KSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 363 QLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG 420
                           ++DF ++                  F     L  LD++    + 
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTE--------FSAFLSLEKLLYLDISYTNTKI 438

Query: 421 TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN 480
                      L  L +  N F D    +++     +  LD+              S   
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL--------------SKCQ 484

Query: 481 FKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASL 540
            +         L  L  LN+SHN L     S +  L  L +LD S N +  +        
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 541 YFLSYLNLSYNQL 553
             L++ NL+ N +
Sbjct: 545 KSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (302), Expect = 6e-29
 Identities = 76/484 (15%), Positives = 149/484 (30%), Gaps = 76/484 (15%)

Query: 93  LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQF 152
            ++++L+       +  S  +N S L +L+LS              +  L  L  + N  
Sbjct: 34  TKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 153 SGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNAS 212
                   +  L +L   V  +  L       + +   L++L +A+N           ++
Sbjct: 93  QSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 213 SSALDT------QIKRVYSC----LGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKL 262
            + L         I+ +       L    Q    L +S N +      D+      L +L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQGIKLHEL 209

Query: 263 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKN----------QSQLQYLYLS 312
            L  N  + +           L +  L   + ++  NL+              +    L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLP 372
                 +       ++   +  ++L+   +   +        + + +I  QL+       
Sbjct: 270 YTNDFSDDIVKFHCLA--NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK------- 320

Query: 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML 432
                  F   +                       L++L L  N+  G++         L
Sbjct: 321 ------QFPTLDLPF--------------------LKSLTLTMNK--GSISFKKVALPSL 352

Query: 433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL 492
             L+L  N  S    CS  D           L+ +   F      + NF G        L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTN------SLRHLDLSFNGAIIMSANFMG--------L 398

Query: 493 KSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           + L  L+  H+ L      S+F +L++L  LD+S  N           L  L+ L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 552 QLEG 555
             + 
Sbjct: 459 SFKD 462

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (264), Expect = 4e-24
 Identities = 61/339 (17%), Positives = 118/339 (34%), Gaps = 43/339 (12%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS 291
              + LS N L   ++     +   L  LDLS   +   E+  + ++  +  L  L L  
Sbjct: 34  TKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEI---ETIEDKAWHGLHHLSNLILTG 89

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
             ++          + L+ L   E +++      I    ++ L  LN++HNF+   + P 
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI--GQLITLKKLNVAHNFIHSCKLPA 147

Query: 350 SI---PALRFIDLISNQLRG-------NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399
                  L  +DL  N ++         + + P   + +D S N              + 
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF----------IQ 197

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPK-SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK 458
           D   +   L  L L GN     + K  +     L V  L   +F D+    +++ P  ++
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE-PSIME 256

Query: 459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKR 518
           GL                +  N     +     L ++  ++L+  ++            +
Sbjct: 257 GLC------DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFK 308

Query: 519 LESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF 557
            +SL +    L +  P+    L FL  L L+ N+    F
Sbjct: 309 WQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSISF 344

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (259), Expect = 2e-23
 Identities = 72/395 (18%), Positives = 130/395 (32%), Gaps = 43/395 (10%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           LD+S   I    + A   F    L  L L     +   + + L N++ L    L    F 
Sbjct: 186 LDMSLNPIDFIQDQA---FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 130 GQIPVQISRMA--------RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSI 181
            +  ++I   +         +     ++     S   +++  L N+    L+  S+    
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF-SDDIVKFHCLANVSAMSLAGVSI--KY 299

Query: 182 PRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALD---TQIKRVYSCLGLRTQKLTPLL 238
              + +    Q L +   Q     P        +L     +    +  + L    L+ L 
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLD 356

Query: 239 LSSNNLNG-TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI 297
           LS N L+         L   +L  LDLS+N   +   S N+     L+ L+     L+ +
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRV 414

Query: 298 PN---LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI--- 351
                  +  +L YL +S      +       ++   L+ L ++ N              
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT--SLNTLKMAGNSFKDNTLSNVFANT 472

Query: 352 PALRFIDLISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL 408
             L F+DL   QL      + +       ++ S+NN                 + +   L
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS---------SHYNQLYSL 523

Query: 409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
            TLD + NR + +        K L   NL NN  +
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 28/181 (15%)

Query: 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVL 435
           I     +   +           +PD  P +   + +DL+ N  +     S +    L+ L
Sbjct: 14  ITYQCMDQKLSK----------VPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 436 NLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSL 495
           +L   +       + +            L  +    +++  + N  +         L SL
Sbjct: 62  DLSRCEIETIEDKAWHG-----------LHHL----SNLILTGNPIQSFSPGSFSGLTSL 106

Query: 496 YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA-IPSQLASLYFLSYLNLSYNQLE 554
             L      L        G L  L+ L+++ N +    +P+  ++L  L +++LSYN ++
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 555 G 555
            
Sbjct: 167 T 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 5e-39
 Identities = 93/515 (18%), Positives = 166/515 (32%), Gaps = 44/515 (8%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L+ S   +            L  L  L+L R         +   +   L  L L+     
Sbjct: 38  LEFSFNVLPTIQNTT--FSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLI 94

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
                 +S    L  L F     S         +   L    L  N +        F   
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 190 MLQQLQLANNQFGGSIPR-FSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLSSN 242
            L+ L   NN          S+   +   +       I  +           +     + 
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 243 NLNGTVQLDKILSLGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIPN-- 299
           NL    +  K  ++ +L            +  +         +E +NL       I +  
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFI 357
               S LQ L L+   +S E+P+ +  +S   L  L LS N        +  + P+L  +
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLST--LKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 358 DLISNQLRGNIH----QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDL 413
            +  N  R  +     +   N   +D S+++  +S                   LQ+L+L
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETS-------DCCNLQLRNLSHLQSLNL 383

Query: 414 NGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF-- 471
           + N P     ++  +C  LE+L+L   +   K   S +     +K L++    +      
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 472 --------TSIDFSTNNFKGPILEDVGL---LKSLYGLNLSHNALTGSIPSSFGNLKRLE 520
                     ++   N+F    ++       L  L  L LS   L+     +F +LK + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 521 SLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            +DLS N L+ +    L+ L  + YLNL+ N +  
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  134 bits (339), Expect = 1e-33
 Identities = 93/525 (17%), Positives = 175/525 (33%), Gaps = 68/525 (12%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L L+   +    E A  L     L+ L   +T  +       L N  +L  L L     +
Sbjct: 86  LVLTANPLIFMAETA--LSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHIS 142

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL--SDNSLDGSIPRSMFE 187
                +     +L  LDF  N     +S      L       L  + N +   I    F+
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFD 200

Query: 188 FPMLQQLQLANNQF-GGSIPRFSNASSSAL------DTQIKRVYSCL--GLRTQKLTPLL 238
             + Q L     Q          N++  +L      D   + +   +  GL    +  + 
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 239 LSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLRE 296
           L  +     +  +       L +LDL+   L    S        +  L+ L L++ K   
Sbjct: 261 LQKHYFFN-ISSNTFHCFSGLQELDLTATHL----SELPSGLVGLSTLKKLVLSANKFEN 315

Query: 297 IPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP----YS 350
           +      N   L +L +  N    E+       ++  L  L+LSH+ +           +
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 351 IPALRFIDLISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407
           +  L+ ++L  N+      +          +D +                    F    L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--------QSPFQNLHL 426

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           L+ L+L+ +    +  +       L+ LNL  N F             +++ L  +L+ +
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK----GNIQKTNSLQTLG-RLEIL 481

Query: 468 L-----------NIF------TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP 510
           +           + F        +D S N      +E +  LK +Y LNL+ N ++  +P
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP 540

Query: 511 SSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           S    L +  +++L  N L        +++YFL +   +  +LE 
Sbjct: 541 SLLPILSQQRTINLRQNPLD----CTCSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (300), Expect = 1e-28
 Identities = 58/323 (17%), Positives = 104/323 (32%), Gaps = 36/323 (11%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
           +   L+ S+N L    + +N +FS +  L  L+L  C++  I     ++Q +L  L L+ 
Sbjct: 34  STECLEFSFNVL---PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY--SIPALRFIDLISNQLRGNIHQL 371
           N +       +       L  L      +         +   L  + L SN +       
Sbjct: 91  NPLIFMAETALSGPK--ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 372 PNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAK 428
                    +DF NN        D  +        +     +L+LNGN     +      
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSS-------LQQATNLSLNLNGN-DIAGIEPGAFD 200

Query: 429 CKMLEVLNLGNNQFSDKFPCSLYDAPIT-IKGLDIKLQKILNI------------FTSID 475
             + + LN G  Q        L ++ I  +     +     +I              SI+
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535
              + F             L  L+L+   L+  +PS    L  L+ L LS N        
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 536 QLASLYFLSYLNLSYNQLEGRFQ 558
             ++   L++L++  N       
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 4e-16
 Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 26/203 (12%)

Query: 355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414
           +  +  +  L      LPN+   ++FS N   +              F R   L  LDL 
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTT---------FSRLINLTFLDLT 65

Query: 415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI 474
             +       +      L+ L L  N            A   + G    L+        +
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-------AETALSGP-KALK-------HL 110

Query: 475 DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
            F            +   K+L  L L  N ++          ++L+ LD   N +     
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 535 SQLASLYFLS--YLNLSYNQLEG 555
             ++SL   +   LNL+ N + G
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAG 193

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (340), Expect = 6e-34
 Identities = 87/483 (18%), Positives = 158/483 (32%), Gaps = 68/483 (14%)

Query: 89  SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA-GQIPVQISRMARLVALDF 147
            L  L+ L    T+    +    + ++ +L  LN++       ++P   S +  L  LD 
Sbjct: 98  GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 148 SFNQFSGSISSIRWEHLLNLVCAV----LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGG 203
           S N+   SI       L  +        LS N ++  I    F+   L +L L NN    
Sbjct: 157 SSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 204 SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLD 263
           ++ +      +             GL   +L      +           +  L NL   +
Sbjct: 215 NVMKTCIQGLA-------------GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 264 LSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP 321
                L          F+ +  +   +L S  +  + +       Q+L L   +      
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF----- 316

Query: 322 NWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFS 381
                + +  L  L  + N      +   +P+L F+DL  N L                 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL----------------- 359

Query: 382 NNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ 441
                      +  G    +      L+ LDL+ N    T+  +    + LE L+  ++ 
Sbjct: 360 -----------SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 442 FSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI----------DFSTNNFKGPILEDV-G 490
                  S++ +   +  LDI        F  I            + N+F+   L D+  
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 491 LLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSY 550
            L++L  L+LS   L    P++F +L  L+ L+++ N L          L  L  + L  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 551 NQL 553
           N  
Sbjct: 528 NPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 1e-24
 Identities = 96/451 (21%), Positives = 156/451 (34%), Gaps = 64/451 (14%)

Query: 131 QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPM 190
           +IP  +        LD SFN     + S  +     L    LS   +      +      
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 191 LQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL 250
           L  L L  N          + +  A                  L  L+    NL  +++ 
Sbjct: 78  LSTLILTGNPI-------QSLALGAFS------------GLSSLQKLVAVETNLA-SLEN 117

Query: 251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQY 308
             I  L  L +L++++N +   +    +S    LE L+L+S K++ I    L+   Q+  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 309 ----LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQL 364
               L LS N ++   P     +    LH L L +NF         I  L  +++    L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR---LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 365 R-----GNIHQLPNNPI----YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNG 415
                 GN+ +   + +     +             D     + D F     + +  L  
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL---DYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 416 NRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF--- 471
              +     S     + LE++N    QF      SL       K L     K  N F   
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-------KRLTFTSNKGGNAFSEV 344

Query: 472 -----TSIDFSTN--NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
                  +D S N  +FKG   +      SL  L+LS N +  ++ S+F  L++LE LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 525 SMNNLSRAIP-SQLASLYFLSYLNLSYNQLE 554
             +NL +    S   SL  L YL++S+    
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 29/202 (14%)

Query: 358 DLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNR 417
             +          LP +   +D S N     +           +F     LQ LDL+   
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LG--------SYSFFSFPELQVLDLSRCE 63

Query: 418 PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFS 477
            Q     +      L  L L  N                I+ L +     L+    +   
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNP---------------IQSLALGAFSGLSSLQKLVAV 108

Query: 478 TNNFKGPILEDVGLLKSLYGLNLSHNALT-GSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
             N        +G LK+L  LN++HN +    +P  F NL  LE LDLS N +     + 
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 537 LASLYFLSY----LNLSYNQLE 554
           L  L+ +      L+LS N + 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN 190

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 1e-31
 Identities = 99/509 (19%), Positives = 188/509 (36%), Gaps = 48/509 (9%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGF 128
           L+L ++     I+  A   +L  LR L+L  +      +       +  L  L L   G 
Sbjct: 53  LELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGL 109

Query: 129 AGQI--PVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF 186
           +  +        +  L  LD S NQ         +  L +L     S N +   +     
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHEL 168

Query: 187 EF---PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLS-SN 242
           E      L    LA N     +        +     +  +   L +     T  +    +
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI---LDVSGNGWTVDITGNFS 225

Query: 243 NLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM----LELLNLASCKLREIP 298
           N     Q   ++   ++      ++++   +     +F+ +    +  L+L+   +  + 
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNI---KDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 299 N--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL--VGFQAPYSIPAL 354
           +   +    L+ L L+ N+I+ +I +  +   +  L  LNLS+N L  +     Y +P +
Sbjct: 283 SRVFETLKDLKVLNLAYNKIN-KIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 355 RFIDLISNQLR---GNIHQLPNNPIYIDFSNNNFT-----SSIPADTVNGTLPDTFPRNC 406
            +IDL  N +        +       +D  +N  T      SIP   ++G    T P+  
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 407 L-LQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464
           L    + L+ NR +   +   + +   L++L L  N+FS            +++ L +  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG- 459

Query: 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
           + +L +    +   + F+G        L  L  L L+HN L    P  F +L  L  L L
Sbjct: 460 ENMLQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 525 SMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           + N L+    + L +   L  L++S NQL
Sbjct: 512 NSNRLTVLSHNDLPAN--LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  115 bits (289), Expect = 5e-27
 Identities = 71/332 (21%), Positives = 108/332 (32%), Gaps = 39/332 (11%)

Query: 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 292
               LLLS N +  TV       L  L  L+L      +      +   P L +L+L S 
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 293 KLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
           K+  +     +    L  L L    +S  +    +  ++  L  L+LS N +       S
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 351 IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQT 410
              L         L+            IDFS+N        +               L  
Sbjct: 144 FGKLN-------SLK-----------SIDFSSNQIFLVCEHELEPLQGKT-------LSF 178

Query: 411 LDLNGNRPQGTVPKSIAKCKM------LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL 464
             L  N     V     KC        LE+L++  N ++     +  +A   I       
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---ISKSQAFS 235

Query: 465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG--LNLSHNALTGSIPSSFGNLKRLESL 522
             + +      F  +N K P       L       L+LSH  +       F  LK L+ L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           +L+ N +++        L  L  LNLSYN L 
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (284), Expect = 2e-26
 Identities = 84/485 (17%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 90  LHYLRSLNLARTSFNG-TQISSK-LANISSLTYLNLSDAGFAGQIPVQI-SRMARLVALD 146
           L+    L L   SFN    +++     +  L  L L        I  +    +  L  LD
Sbjct: 23  LNTTERLLL---SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSL-DGSIPRSMFEF-PMLQQLQLANNQFGGS 204
              ++    +    ++ L +L    L    L D  +    F     L +L L+ NQ    
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 205 IPRFSNASSSALDT------QIKRVY--SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSL 256
               S    ++L +      QI  V       L+ + L+   L++N+L   V +D    +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 257 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQI 316
                + L    +     S N     +    + A  K  +  +L     +       + I
Sbjct: 199 NPFRNMVLEILDV-----SGNGWTVDITGNFSNAISKS-QAFSLILAHHIMGAGFGFHNI 252

Query: 317 SREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLR---GNIHQL 371
                N    ++   +  L+LSH F+    +    ++  L+ ++L  N++          
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKM 431
            +N   ++ S N     +            F     +  +DL  N       ++    + 
Sbjct: 313 LDNLQVLNLSYNLLGE-LY--------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL 491
           L+ L+L +N  +            +I  + +   K++ +   I+ + N            
Sbjct: 364 LQTLDLRDNALTTIHFIP------SIPDIFLSGNKLVTL-PKINLTANL----------- 405

Query: 492 LKSLYGLNLSHNALTG-SIPSSFGNLKRLESLDLSMNNLSRAIPSQLAS-LYFLSYLNLS 549
                 ++LS N L    I      +  L+ L L+ N  S     Q  S    L  L L 
Sbjct: 406 ------IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 550 YNQLE 554
            N L+
Sbjct: 460 ENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 73/400 (18%), Positives = 130/400 (32%), Gaps = 63/400 (15%)

Query: 74  TESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP 133
              +S         F    L  L+++   +      +    IS     +L          
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI--------- 237

Query: 134 VQISRMARLVALDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPML 191
                   ++   F F+       ++       ++    LS   +  S+   +FE    L
Sbjct: 238 ----LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDL 292

Query: 192 QQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLSSNNLN 245
           + L LA N+    I   +      L         +  +YS       K+  + L  N++ 
Sbjct: 293 KVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQ 305
             +Q      L  L  LDL  N+L          F P +  + L+  KL  +P +     
Sbjct: 352 -IIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPKI--NLT 402

Query: 306 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI---PALRFIDLISN 362
              ++LSEN++   +    + + V  L  L L+ N         +    P+L  + L  N
Sbjct: 403 ANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 363 QLRG-NIHQLPNNPI-------YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414
            L+     +L  +          +  ++N   S +P        P  F     L+ L LN
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LP--------PGVFSHLTALRGLSLN 512

Query: 415 GNR----PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSL 450
            NR        +P +      LE+L++  NQ     P   
Sbjct: 513 SNRLTVLSHNDLPAN------LEILDISRNQLLAPNPDVF 546

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 41/321 (12%)

Query: 86  ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145
             + L  +  ++L +      Q  +    +  L  L+L D          I  +  +  +
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDLRDNAL-----TTIHFIPSIPDI 386

Query: 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGS 204
             S N+           +L++L     S+N L+           P LQ L L  N+F   
Sbjct: 387 FLSGNKLVTLPKINLTANLIHL-----SENRLENLDILYFLLRVPHLQILILNQNRF--- 438

Query: 205 IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG----TVQLDKILSLGNLA 260
                        +      +        L  L L  N L       +  D    L +L 
Sbjct: 439 -------------SSCSGDQTPSEN--PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 261 KLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 318
            L L++N L    S     FS +  L  L+L S +L  + +    + L+ L +S NQ+  
Sbjct: 484 VLYLNHNYL---NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540

Query: 319 EIPNWIWRVSVVGLHCLNLSHN-FLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIY 377
             P+    +SV+ +          L  F    +   +      ++             + 
Sbjct: 541 PNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSL- 599

Query: 378 IDFSNNNFTSSIPADTVNGTL 398
              S           ++  +L
Sbjct: 600 FSLSTEGCDEEEVLKSLKFSL 620

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 6e-31
 Identities = 76/415 (18%), Positives = 140/415 (33%), Gaps = 72/415 (17%)

Query: 142 LVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF 201
              L       +  I       L   + AVL   S+   + +   E   + +L +A  + 
Sbjct: 2   AATLATLPAPIN-QIFPD--ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV 56

Query: 202 GGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAK 261
             SI      ++                    L  L L+ N +     +  + +L  L  
Sbjct: 57  A-SIQGIEYLTN--------------------LEYLNLNGNQITD---ISPLSNLVKLTN 92

Query: 262 LDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP 321
           L +  N +    + +N      L  L L    + +I  L N +++  L L  N    ++ 
Sbjct: 93  LYIGTNKITDISALQN---LTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 322 NWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRG--NIHQLPNNPIYID 379
                 ++ GL+ L ++ + +       ++  L  + L  NQ+     +  L +   Y  
Sbjct: 150 PL---SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFT 205

Query: 380 FSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGN 439
              N  T   P       +         L +L +  N  + T    +A    L  L +G 
Sbjct: 206 AYVNQITDITPV----ANMTR-------LNSLKIGNN--KITDLSPLANLSQLTWLEIGT 252

Query: 440 NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLN 499
           NQ SD            I  +   L K+      ++  +N      +  +  L  L  L 
Sbjct: 253 NQISD------------INAVK-DLTKL----KMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 500 LSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           L++N L        G L  L +L LS N+++   P  LASL  +   + +   ++
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (288), Expect = 4e-28
 Identities = 73/351 (20%), Positives = 133/351 (37%), Gaps = 44/351 (12%)

Query: 216 LDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESS 275
           L   I +++    L   +    +L   ++   V  ++   L ++ KL ++   +    S 
Sbjct: 8   LPAPINQIFPDADL--AEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV---ASI 59

Query: 276 RNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCL 335
           +   +   LE LNL   ++ +I  L N  +L  LY+  N+I+ +I       ++  L  L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISAL---QNLTNLREL 115

Query: 336 NLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADT 393
            L+ + +       ++  +  ++L +N    ++  L N     Y+  + +      P   
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 394 VNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFP-CSLYD 452
               L D       L +L LN N  Q      +A    L       NQ +D  P  ++  
Sbjct: 173 -IANLTD-------LYSLSLNYN--QIEDISPLASLTSLHYFTAYVNQITDITPVANM-- 220

Query: 453 APITIKGLDI---KLQKILNIF-----TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504
               +  L I   K+  +  +      T ++  TN      +  V  L  L  LN+  N 
Sbjct: 221 --TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

Query: 505 LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           ++    S   NL +L SL L+ N L       +  L  L+ L LS N +  
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 8e-21
 Identities = 62/300 (20%), Positives = 124/300 (41%), Gaps = 28/300 (9%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L+L+   I+  I     L +L  L +L +     N     S L N+++L  L L++   +
Sbjct: 71  LNLNGNQITD-ISP---LSNLVKLTNLYI---GTNKITDISALQNLTNLRELYLNEDNIS 123

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFP 189
              P  ++ + ++ +L+   N     +S +   ++  L    ++++ +    P +     
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTESKVKDVTPIA--NLT 177

Query: 190 MLQQLQLANNQFGGSIPRFSNASS----SALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245
            L  L L  NQ    I   ++ +S    +A   QI  +     +   +L  L + +N + 
Sbjct: 178 DLYSLSLNYNQI-EDISPLASLTSLHYFTAYVNQITDITPVANM--TRLNSLKIGNNKIT 234

Query: 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQ 305
               L  + +L  L  L++  N +              L++LN+ S ++ +I  L N SQ
Sbjct: 235 D---LSPLANLSQLTWLEIGTNQI---SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ 288

Query: 306 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLR 365
           L  L+L+ NQ+  E    I  ++   L  L LS N +   +   S+  +   D  +  ++
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLT--NLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 7e-14
 Identities = 58/256 (22%), Positives = 103/256 (40%), Gaps = 30/256 (11%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFN-GTQISSKLANISSLTYLNLSDAGF 128
           L L+ ++IS  I     L +L  + SLNL     N      S L+N++ L YL ++++  
Sbjct: 115 LYLNEDNISD-ISP---LANLTKMYSLNL---GANHNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 129 AGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF 188
               P  I+ +  L +L  ++NQ    IS +    L +L       N +    P  +   
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIE-DISPL--ASLTSLHYFTAYVNQITDITP--VANM 220

Query: 189 PMLQQLQLANNQFGGSIPRFSNASS----SALDTQIKRVYSCLGLRTQKLTPLLLSSNNL 244
             L  L++ NN+     P  +N S          QI  + +   L   KL  L + SN +
Sbjct: 221 TRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDL--TKLKMLNVGSNQI 277

Query: 245 NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKN 302
           +    +  + +L  L  L L+ N L  ++         +  L  L L+   + +I  L +
Sbjct: 278 SD---ISVLNNLSQLNSLFLNNNQLGNEDME---VIGGLTNLTTLFLSQNHITDIRPLAS 331

Query: 303 QSQLQYLYLSENQISR 318
            S++     +   I +
Sbjct: 332 LSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 1e-29
 Identities = 91/479 (18%), Positives = 166/479 (34%), Gaps = 72/479 (15%)

Query: 87  LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD 146
           +F+   L               +    ++  +T L     G   +    +  +  L  ++
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 74

Query: 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP 206
           FS NQ +  I+ +  ++L  LV  ++++N +    P  +     L  L L NNQ    I 
Sbjct: 75  FSNNQLT-DITPL--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI-TDID 128

Query: 207 RFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSY 266
              N +                     L  L LSSN ++    +  +  L +L +L    
Sbjct: 129 PLKNLT--------------------NLNRLELSSNTISD---ISALSGLTSLQQLSFGN 165

Query: 267 NSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWR 326
               +   +   +    LE L+++S K+ +I  L   + L+ L  + NQIS   P     
Sbjct: 166 QVTDLKPLANLTT----LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--- 218

Query: 327 VSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRG--NIHQLPNNPIYIDFSNNN 384
             +  L  L+L+ N L       S+  L  +DL +NQ+     +  L      +    N 
Sbjct: 219 -ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL-TELKLGANQ 276

Query: 385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
            ++  P   +             L  L+LN N  Q      I+  K L  L L  N  SD
Sbjct: 277 ISNISPLAGLTA-----------LTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISD 323

Query: 445 KFPCS---------LYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSL 495
             P S          Y+  ++    D+     L     +    N      L  +  L  +
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVS----DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 377

Query: 496 YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
             L L+  A T +  +   N+    ++      L    P+ ++     +  ++++N   
Sbjct: 378 TQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 52/282 (18%), Positives = 93/282 (32%), Gaps = 34/282 (12%)

Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
           P+          + +I      ++     L +  ++  +        +  +  L      
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ----TDLDQVTTLQADRLG 57

Query: 342 LVGFQAPYSIPALRFIDLISNQLRG--NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399
           +        +  L  I+  +NQL     +  L    + I  +NN      P       L 
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKL-VDILMNNNQIADITP----LANLT 112

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD-KFPCSLYDAPITIK 458
           +       L  L L  N  Q T    +     L  L L +N  SD      L    +   
Sbjct: 113 N-------LTGLTLFNN--QITDIDPLKNLTNLNRLELSSNTISDISALSGLTS--LQQL 161

Query: 459 GLDIKLQKILNIF-----TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513
               ++  +  +        +D S+N      +  +  L +L  L  ++N ++   P   
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--L 217

Query: 514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           G L  L+ L L+ N L       LASL  L+ L+L+ NQ+  
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (300), Expect = 9e-29
 Identities = 77/456 (16%), Positives = 143/456 (31%), Gaps = 54/456 (11%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
            +    +     F   IP  ++  A + +LD SFN+ +  I         NL   +L  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 176 SLDGSIPRSMFEF-PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL 234
            +  +I    F     L+ L L++N         S+ SSS                   L
Sbjct: 61  RI-NTIEGDAFYSLGSLEHLDLSDNHL-------SSLSSSWFG------------PLSSL 100

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 294
             L L  N            +L NL  L +       +    +++    L  L + +  L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 295 REIPN--LKNQSQLQYLYLSENQ---ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
           R   +  LK+   + +L L  ++   +     + +  V  + L   NL+           
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 350 SIPALRFIDLISNQLRGNI---------HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPD 400
               ++ +    + L             + L  + +  D    N          +     
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 401 TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGL 460
                  ++ L +        +    +  + ++ + + N++     PCS      +++ L
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339

Query: 461 DIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT--GSIPSSFGNLKR 518
           D+      N+        +  KG          SL  L LS N L            LK 
Sbjct: 340 DLSE----NLMVEEYLKNSACKG-------AWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 519 LESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           L SLD+S N     +P        + +LNLS   + 
Sbjct: 389 LTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (264), Expect = 3e-24
 Identities = 71/476 (14%), Positives = 150/476 (31%), Gaps = 73/476 (15%)

Query: 89  SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQ-ISRMARLVALDF 147
            L  L+ LNL    +    ++S   N+++L  L + +     +I     + +  L  L+ 
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 148 SFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR 207
                  +  S   + + ++    L  +     +         ++ L+L +         
Sbjct: 156 KALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 208 FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL-DKILSLGNLAKLDLSY 266
                       +        ++       +L+  + N  ++L   IL L  +   D + 
Sbjct: 215 -----------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 267 NSLAVDESSRNYSFSPM-------LELLNLASCKLREIPN--LKNQSQLQYLYLSENQIS 317
           N L     S +   S +       +  L++    L    +       +++ + +  +++ 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIY 377
             +P    +  +  L  L+LS N +V               L ++  +G    L      
Sbjct: 324 -LVPCSFSQ-HLKSLEFLDLSENLMV------------EEYLKNSACKGAWPSL----QT 365

Query: 378 IDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNL 437
           +  S N+  S +          +       L +LD++ N     +P S    + +  LNL
Sbjct: 366 LVLSQNHLRS-MQKT------GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 438 GNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG 497
            +        C     P T++ LD+    + +                      L  L  
Sbjct: 418 SSTGIRVVKTC----IPQTLEVLDVSNNNLDSFSLF------------------LPRLQE 455

Query: 498 LNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           L +S N L  ++P +      L  + +S N L          L  L  + L  N  
Sbjct: 456 LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.6 bits (246), Expect = 5e-22
 Identities = 85/470 (18%), Positives = 164/470 (34%), Gaps = 62/470 (13%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
           +++  L+LS           +   A L  L    ++ + +I    +  L +L    LSDN
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDN 84

Query: 176 SLDGSIPRSMFEF-PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL 234
            L  S+  S F     L+ L L  N +                  +        L    L
Sbjct: 85  HLS-SLSSSWFGPLSSLKYLNLMGNPY----------------QTLGVTSLFPNLT--NL 125

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASC 292
             L + +      ++      L +L +L++   SL    + ++ S   +  +  L L   
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLS 182

Query: 293 KLREIPN--LKNQSQLQYLYLSENQISR---------EIPNWIWRVSVVGLHCLNLSHNF 341
           +   +        S ++YL L +  ++R         E+ + + +++  G    + S N 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 342 LVG-FQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS--SIPADTVNGTL 398
           L+   +    +  + F D   N L        +    +            IP   +   L
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 399 PDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKF--PCSLYDAPIT 456
              +     ++ + +  ++            K LE L+L  N   +++    +   A  +
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 457 IKGLD------IKLQKILNIF------TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504
           ++ L         +QK   I       TS+D S N F  P+ +     + +  LNLS   
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 505 LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           +   + +     + LE LD+S NNL  +    L  L     L +S N+L+
Sbjct: 422 IR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 39/216 (18%), Positives = 63/216 (29%), Gaps = 22/216 (10%)

Query: 352 PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTL 411
            A    D  S         L      +D S N  T  I                  LQ L
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-IG--------HGDLRACANLQVL 55

Query: 412 DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI---KLQKI- 467
            L  +R       +      LE L+L +N  S     S +    ++K L++     Q + 
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 468 -------LNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRL 519
                  L    ++          I       L SL  L +   +L      S  +++ +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 520 ESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
             L L ++  +  +      L  + YL L    L  
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (290), Expect = 1e-28
 Identities = 59/322 (18%), Positives = 107/322 (33%), Gaps = 41/322 (12%)

Query: 238 LLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI 297
              + + N      +  +  N      +  +L         +  P    L L S  L + 
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF 96

Query: 298 PN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRF 356
           P+     S LQ++ +    +  E+P+ + + +  GL  L L+ N L     P SI     
Sbjct: 97  PDQAFRLSHLQHMTIDAAGL-MELPDTMQQFA--GLETLTLARNPLRAL--PASI----- 146

Query: 357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN 416
                     ++++L      +        + +P    +            LQ+L L   
Sbjct: 147 ---------ASLNRL----RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476
             + ++P SIA  + L+ L + N+  S     +L      I  L  KL+++       D 
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLS-----AL---GPAIHHL-PKLEEL-------DL 236

Query: 477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ 536
                        G    L  L L   +   ++P     L +LE LDL        +PS 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 537 LASLYFLSYLNLSYNQLEGRFQ 558
           +A L     + +  +      Q
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 54/288 (18%), Positives = 89/288 (30%), Gaps = 57/288 (19%)

Query: 93  LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQF 152
             +L L        Q   +   +S L ++ +  AG   ++P  + + A L  L  + N  
Sbjct: 83  RVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 153 SGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNAS 212
               +SI    L  L    +        +P  +       + Q   N             
Sbjct: 140 RALPASI--ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN------------- 184

Query: 213 SSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL-DKILSLGNLAKLDLSYNSLAV 271
                                L  L L    +     L   I +L NL  L +  + L  
Sbjct: 185 ---------------------LQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPL-- 218

Query: 272 DESSRNYSFS--PMLELLNLASC-KLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRV 327
             S+   +    P LE L+L  C  LR  P     ++ L+ L L +      +P  I R+
Sbjct: 219 --SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 328 SVVGLHCLNLSHNFLVGFQAPYSI---PALRFIDLISNQLRGNIHQLP 372
           +   L  L+L     +  + P  I   PA   I +  +         P
Sbjct: 277 T--QLEKLDLRGCVNLS-RLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (278), Expect = 3e-26
 Identities = 78/401 (19%), Positives = 146/401 (36%), Gaps = 66/401 (16%)

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT 231
              ++L   +P          +   A +++  + P     +    +  + R+  CL    
Sbjct: 18  RHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP---PGNGEQREMAVSRLRDCL---D 70

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYN-------------SLAVDESSRNY 278
           ++   L L++  L+    L +     +L  L  S N             SL VD ++   
Sbjct: 71  RQAHELELNNLGLS---SLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 125

Query: 279 --SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 336
                P+LE L +++ +L ++P L+N S L+ + +  N +  ++P+         L  + 
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP-----PSLEFIA 179

Query: 337 LSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNG 396
             +N L       ++P L  I   +N L+  +  LP +   I   NN             
Sbjct: 180 AGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEE--------- 229

Query: 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT 456
                      L T+  + N    T+P      + L V +       +  P SL      
Sbjct: 230 --LPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPE-LPQSLT----F 281

Query: 457 IKGLDIKLQKILNIFTSI---DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513
           +   +     +  +  ++   + S+N     I     L  SL  LN+S+N L   +P+  
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALP 336

Query: 514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
             L   E L  S N+L+  +P    +L     L++ YN L 
Sbjct: 337 PRL---ERLIASFNHLAE-VPELPQNL---KQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (273), Expect = 1e-25
 Identities = 85/472 (18%), Positives = 161/472 (34%), Gaps = 86/472 (18%)

Query: 87  LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD 146
           +  L             N   +SS       L  L  S      ++P     +  L+  +
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP 206
            +    S     + +   L +     S+N L+  +P  +     L+ + + NN       
Sbjct: 121 NNLKALSDLPPLLEY---LGV-----SNNQLE-KLP-ELQNSSFLKIIDVDNNSL----- 165

Query: 207 RFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSY 266
                    L                 L  +   +N L    +L ++ +L  L  +    
Sbjct: 166 -------KKLPDLPP-----------SLEFIAAGNNQLE---ELPELQNLPFLTAIYADN 204

Query: 267 NSL-AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 325
           NSL  + +   +      LE +   +  L E+P L+N   L  +Y   N +   +P+   
Sbjct: 205 NSLKKLPDLPLS------LESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLP- 256

Query: 326 RVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNF 385
                 L  LN+  N+L     P    +L F+D+  N     + +LP N  Y++ S+N  
Sbjct: 257 ----PSLEALNVRDNYLTDL--PELPQSLTFLDVSENIFS-GLSELPPNLYYLNASSNEI 309

Query: 386 TSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDK 445
            S          L D  P    L+ L+++ N+    +P    +   LE L    N  +  
Sbjct: 310 RS----------LCDLPPS---LEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-- 350

Query: 446 FPCSLYDAPITIKGLDI---KLQKILNIFTSI-DFSTNNFKGPILEDVGLLKSLYGLNLS 501
               + + P  +K L +    L++  +I  S+ D   N+    + E   L ++L  L++ 
Sbjct: 351 ---EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE---LPQNLKQLHVE 404

Query: 502 HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            N L    P    ++   E L ++   +         +   L      ++  
Sbjct: 405 TNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.1 bits (219), Expect = 9e-19
 Identities = 63/338 (18%), Positives = 106/338 (31%), Gaps = 75/338 (22%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM---------- 283
           L   L  S+NL  T    +  ++ +  +   +++    +    N     M          
Sbjct: 13  LQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 284 --LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
                L L +  L  +P L     L+ L  S N ++ E+P     +    L   N +   
Sbjct: 71  RQAHELELNNLGLSSLPELP--PHLESLVASCNSLT-ELPELPQSLKS--LLVDNNNLKA 125

Query: 342 LVGFQAPYSIPALRFIDLISNQLRG--NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399
           L         P L ++ + +NQL     +         ID  NN+             LP
Sbjct: 126 L-----SDLPPLLEYLGVSNNQLEKLPELQNSSF-LKIIDVDNNSLKK----------LP 169

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD--KFPCSLYDAPITI 457
           D  P    L+ +    N  Q      +     L  +   NN        P SL       
Sbjct: 170 DLPPS---LEFIAAGNN--QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL------- 217

Query: 458 KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK 517
                          SI    N  +   L ++  L  L  +   +N L  ++P    +L+
Sbjct: 218 --------------ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE 260

Query: 518 RLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            L   D  + +L     S       L++L++S N   G
Sbjct: 261 ALNVRDNYLTDLPELPQS-------LTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 52/265 (19%), Positives = 90/265 (33%), Gaps = 49/265 (18%)

Query: 298 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFI 357
           P   + + LQ      + +  E+P     V          + +      AP      R  
Sbjct: 5   PRNVSNTFLQEPLRHSSNL-TEMPVEAENVK--SKTEYYNAWSEWER-NAPPGNGEQR-- 58

Query: 358 DLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNR 417
           ++  ++LR     L      ++ +N   +S          LP+  P    L++L  + N 
Sbjct: 59  EMAVSRLRDC---LDRQAHELELNNLGLSS----------LPELPPH---LESLVASCNS 102

Query: 418 PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI---KLQKILNIF--- 471
               +P+     K L V N      SD  P         ++ L +   +L+K+  +    
Sbjct: 103 LT-ELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLPELQNSS 153

Query: 472 --TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL 529
               ID   N+ K        L  SL  +   +N L   +P    NL  L ++    N+L
Sbjct: 154 FLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSL 207

Query: 530 SRAIPSQLASLYFLSYLNLSYNQLE 554
            + +P    S   L  +    N LE
Sbjct: 208 KK-LPDLPLS---LESIVAGNNILE 228

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (270), Expect = 3e-25
 Identities = 68/333 (20%), Positives = 126/333 (37%), Gaps = 47/333 (14%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS 291
              L L  N +  T+  D+  S  +L +L+L+ N +    +    +F+ +  L  L L S
Sbjct: 34  TRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIV---SAVEPGAFNNLFNLRTLGLRS 89

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--A 347
            +L+ IP       S L  L +SEN+I   + +++++  +  L  L +  N LV     A
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ-DLYNLKSLEVGDNDLVYISHRA 147

Query: 348 PYSIPALRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP 403
              + +L  + L    L       +  L    I +   + N  + I           +F 
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINA-IR--------DYSFK 197

Query: 404 RNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIK 463
           R   L+ L+++      T+  +      L  L++ +   +           + ++ L + 
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-------AVPYLAVRHL-VY 249

Query: 464 LQKIL---NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLE 520
           L+ +    N  ++I+   +            L  L  + L    L    P +F  L  L 
Sbjct: 250 LRFLNLSYNPISTIE--GSMLHE--------LLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 521 SLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            L++S N L+    S   S+  L  L L  N L
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 4e-21
 Identities = 73/364 (20%), Positives = 124/364 (34%), Gaps = 74/364 (20%)

Query: 172 LSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLR 230
           L  N +  ++ +  F  FP L++L+L  N         S     A +           L 
Sbjct: 39  LGKNRI-KTLNQDEFASFPHLEELELNENIV-------SAVEPGAFN----------NLF 80

Query: 231 TQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLN 288
              L  L L SN L   + L     L NL KLD+S N +       +Y F  +  L+ L 
Sbjct: 81  --NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI---VILLDYMFQDLYNLKSLE 134

Query: 289 LASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
           +    L  I +      + L+ L L +  ++      +  +   GL  L L H  +    
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH--GLIVLRLRHLNI---- 188

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
              +I    F  L        +  L       + S+  +  ++  +              
Sbjct: 189 --NAIRDYSFKRL------YRLKVL-------EISHWPYLDTMTPN---------CLYGL 224

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            L +L +           ++     L  LNL  N  S      L++    ++ + +   +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQ 283

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
           +  +          F+G        L  L  LN+S N LT    S F ++  LE+L L  
Sbjct: 284 LAVV------EPYAFRG--------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 527 NNLS 530
           N L+
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 57/301 (18%), Positives = 98/301 (32%), Gaps = 76/301 (25%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
               LDL  N +   ++     F+  P LE L L    +  +      N   L+ L L  
Sbjct: 33  ETRLLDLGKNRI---KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPN 373
           N++   IP  ++   +  L  L++S N +V       +    F DL    L+        
Sbjct: 90  NRLK-LIPLGVFT-GLSNLTKLDISENKIV------ILLDYMFQDL--YNLK-------- 131

Query: 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433
               ++  +N+    I     +G L         L+ L L          ++++    L 
Sbjct: 132 ---SLEVGDNDLVY-ISHRAFSG-LNS-------LEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK 493
           VL L +   +                                    +FK         L 
Sbjct: 180 VLRLRHLNINA-------------------------------IRDYSFKR--------LY 200

Query: 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            L  L +SH     ++  +      L SL ++  NL+      +  L +L +LNLSYN +
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 554 E 554
            
Sbjct: 261 S 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 63/287 (21%), Positives = 107/287 (37%), Gaps = 27/287 (9%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGF 128
           L+L+   +S  +E  A   +L  LR+L L         I       +S+LT L++S+   
Sbjct: 61  LELNENIVSA-VEPGA-FNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKI 116

Query: 129 AGQIPVQI-SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE 187
              +   +   +  L +L+   N     IS   +  L +L    L   +L  SIP     
Sbjct: 117 V-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALS 173

Query: 188 -FPMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLS 240
               L  L+L +     +I  +S      L              +   L    LT L ++
Sbjct: 174 HLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 241 SNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIP 298
             NL   V    +  L  L  L+LSYN +    +        +  L+ + L   +L  + 
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPI---STIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 299 N--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
               +  + L+ L +S NQ++  +   ++  SV  L  L L  N L 
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTT-LEESVFH-SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 44/253 (17%), Positives = 87/253 (34%), Gaps = 42/253 (16%)

Query: 89  SLHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGFAGQIPVQI-SRMARLVALD 146
            L+ L+SL +         IS +  + ++SL  L L        IP +  S +  L+ L 
Sbjct: 126 DLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

Query: 147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIP 206
                 + +I    ++ L  L    +S      ++  +      L  L + +     ++P
Sbjct: 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVP 240

Query: 207 R--FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDL 264
                +                       L  L LS N ++ T++   +  L  L ++ L
Sbjct: 241 YLAVRHLVY--------------------LRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 265 SYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQIS--- 317
               L        Y+F     L +LN++  +L  +      +   L+ L L  N ++   
Sbjct: 280 VGGQL---AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336

Query: 318 --REIPNWIWRVS 328
               +    WR++
Sbjct: 337 RLLWVFRRRWRLN 349

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS 549
           G+      L+L  N +       F +   LE L+L+ N +S   P    +L+ L  L L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 550 YNQL 553
            N+L
Sbjct: 89  SNRL 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 4e-25
 Identities = 46/273 (16%), Positives = 91/273 (33%), Gaps = 36/273 (13%)

Query: 284 LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
            ++  +    L++      ++   ++ L LS N +S+     +   +   L  LNLS N 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNV 69

Query: 342 LVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDT 401
           L       S+  LR +DL +N ++  +   P+    +  +NNN +  +      G     
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSI-ETLHAANNNISR-VSCSRGQG----- 121

Query: 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
                  + + L  N+              ++ L+L  N+             +    L 
Sbjct: 122 ------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----------VNFAELA 165

Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLES 521
                +      ++   N      ++   +   L  L+LS N L   +   F +   +  
Sbjct: 166 ASSDTL----EHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 522 LDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           + L  N L   I   L     L + +L  N   
Sbjct: 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 51/329 (15%), Positives = 103/329 (31%), Gaps = 71/329 (21%)

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNL 289
            +     ++ ++L          S  N+ +LDLS N L           +    LELLNL
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPL---SQISAADLAPFTKLELLNL 65

Query: 290 ASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
           +S  L E  +L++ S L+ L L+ N +  E+           +  L+ ++N +       
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLV------GPSIETLHAANNNISRVS-CS 117

Query: 350 SIPALRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
                + I L +N++      +         Y+D   N   + +    +  +        
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDT-VNFAELAASSD------ 169

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ 465
             L+ L+L  N     V   +     L+ L+L +N+ +                      
Sbjct: 170 -TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF--------------------- 205

Query: 466 KILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525
                              +  +      +  ++L +N L   I  +    + LE  DL 
Sbjct: 206 -------------------MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 526 MNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            N        +           ++   ++
Sbjct: 246 GNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 59/359 (16%), Positives = 118/359 (32%), Gaps = 48/359 (13%)

Query: 86  ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145
           I  + +  +   +  +S      S    +  ++  L+LS    +      ++   +L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSI 205
           + S N        +  E L  L    L++N +     + +   P ++ L  ANN     +
Sbjct: 64  NLSSNVLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 206 PRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLS 265
                                     Q    + L++N +   ++         +  LDL 
Sbjct: 115 SCSRG---------------------QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLK 152

Query: 266 YNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 325
            N +     +   + S  LE LNL    + ++      ++L+ L LS N+++  +     
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 326 RVSVVGLHCLNLSHNFLVGFQAP-YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN 384
             +  G+  ++L +N LV  +        L   DL  N             +   FS N 
Sbjct: 212 SAA--GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH-------CGTLRDFFSKNQ 262

Query: 385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS 443
              ++   TV   L       C + TL   G        + +       ++ LG++   
Sbjct: 263 RVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA----YCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 45/266 (16%), Positives = 81/266 (30%), Gaps = 90/266 (33%)

Query: 294 LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSI 351
           + EI   +N ++ +   ++++ + + + +         +  L+LS N L    A      
Sbjct: 2   IHEIK--QNGNRYKIEKVTDSSLKQALASLRQSAW--NVKELDLSGNPLSQISAADLAPF 57

Query: 352 PALRFIDLISNQLRG--NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409
             L  ++L SN L    ++  L                                    L+
Sbjct: 58  TKLELLNLSSNVLYETLDLESLST----------------------------------LR 83

Query: 410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILN 469
           TLDLN N  Q      +     +E L+  NN                             
Sbjct: 84  TLDLNNNYVQ-----ELLVGPSIETLHAANNNI--------------------------- 111

Query: 470 IFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL 529
             + +  S               +    + L++N +T       G   R++ LDL +N +
Sbjct: 112 --SRVSCSR-------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 530 SR-AIPSQLASLYFLSYLNLSYNQLE 554
                    AS   L +LNL YN + 
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 508 SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           +I     N  R +   ++ ++L +A+ S   S + +  L+LS N L 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (257), Expect = 1e-23
 Identities = 63/469 (13%), Positives = 137/469 (29%), Gaps = 78/469 (16%)

Query: 86  ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL 145
           I  + +  +   +  +S      S    +  ++  L+LS    +      ++   +L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSI 205
           + S N        +    L  L    L++N +     + +   P ++ L  ANN     +
Sbjct: 64  NLSSNVLY-ETLDLE--SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 206 PRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLS 265
                                     Q    + L++N +   ++         +  LDL 
Sbjct: 115 SCSRG---------------------QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLK 152

Query: 266 YNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 325
            N +     +   + S  LE LNL    + ++      ++L+ L LS N+++  +     
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 326 RVSVVGLHCLNLSHNFLVGFQAP-YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN 384
             +  G+  ++L +N LV  +        L   DL  N                      
Sbjct: 212 SAA--GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG----------------- 252

Query: 385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD 444
                       TL D F +N  +QT+     +      ++  +C +  + + G     D
Sbjct: 253 ------------TLRDFFSKNQRVQTVAKQTVK--KLTGQNEEECTVPTLGHYGAYCCED 298

Query: 445 KFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504
             P    D          +L  +     ++     +    +  +         ++     
Sbjct: 299 -LPAPFAD----------RLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 505 LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
               I       +   +L+     L   + +   +   L          
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 46/306 (15%), Positives = 93/306 (30%), Gaps = 61/306 (19%)

Query: 251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQY 308
           +   +        ++ +                          L++      ++   ++ 
Sbjct: 4   EIKQNGNRYKIEKVTDS-------------------------SLKQALASLRQSAWNVKE 38

Query: 309 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI 368
           L LS N +S+     +   +   L  LNLS N L       S+  LR +DL +N ++  +
Sbjct: 39  LDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-EL 95

Query: 369 HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAK 428
              P +   +  +NNN +  +      G            + + L  N+           
Sbjct: 96  LVGP-SIETLHAANNNIS-RVSCSRGQG-----------KKNIYLANNKITMLRDLDEGC 142

Query: 429 CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILED 488
              ++ L+L  N+             +    L      +      ++   N      ++ 
Sbjct: 143 RSRVQYLDLKLNEIDT----------VNFAELAASSDTL----EHLNLQYNFIY--DVKG 186

Query: 489 VGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNL 548
             +   L  L+LS N L   +   F +   +  + L  N L   I   L     L + +L
Sbjct: 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244

Query: 549 SYNQLE 554
             N   
Sbjct: 245 RGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 398 LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITI 457
           + +        +   +  +  +  +         ++ L+L  N  S      L      +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KL 60

Query: 458 KGLDI---KLQKILNIF-----TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSI 509
           + L++    L + L++       ++D + N      ++++ +  S+  L+ ++N ++   
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVS 115

Query: 510 PSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            S     K   ++ L+ N ++            + YL+L  N+++
Sbjct: 116 CSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 19/69 (27%), Positives = 30/69 (43%)

Query: 487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL 546
           E            ++ ++L  ++ S   +   ++ LDLS N LS+   + LA    L  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 547 NLSYNQLEG 555
           NLS N L  
Sbjct: 64  NLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 508 SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           +I     N  R +   ++ ++L +A+ S   S + +  L+LS N L 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 26/237 (10%), Positives = 63/237 (26%), Gaps = 15/237 (6%)

Query: 90  LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSF 149
              L++L+L+        +  +  + + +T+++L +      I   +     L   D   
Sbjct: 190 FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 150 NQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRF- 208
           N F        +     +    ++  ++     ++  E  +                 F 
Sbjct: 247 NGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 209 --------SNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLA 260
                      +  +          C      +   +         TV     L      
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKI 363

Query: 261 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317
            L+    +L    S+   + + +   L  A  ++      + QS LQ L     +  
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 64/392 (16%), Positives = 128/392 (32%), Gaps = 76/392 (19%)

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT 231
           +   + D             + +   N+                    ++++ + L    
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNST-------------------MRKLPAALLDSF 68

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNL 289
           +++  L L+   +   +          + KL + +N++          F  +  L +L L
Sbjct: 69  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPH---VFQNVPLLTVLVL 124

Query: 290 ASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA 347
               L  +P     N  +L  L +S N + R I +  ++ +   L  L LS N L     
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQ-ATTSLQNLQLSSNRLTHVD- 181

Query: 348 PYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
              IP+L   ++  N     +  L        +D S+N+    +                
Sbjct: 182 LSLIPSLFHANVSYNL----LSTLAIPIAVEELDASHNSINV-VR--------GPVNVE- 227

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ 465
             L  L L  N    T    +     L  ++L  N+                     +L+
Sbjct: 228 --LTILKLQHN--NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ--------RLE 275

Query: 466 KIL---NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESL 522
           ++    N   +++                + +L  L+LSHN L   +  +     RLE+L
Sbjct: 276 RLYISNNRLVALNLYGQP-----------IPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            L  N++   +   L++ + L  L LS+N  +
Sbjct: 324 YLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 71/381 (18%), Positives = 136/381 (35%), Gaps = 59/381 (15%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGF 128
            D+  +  +  +       +L+  + +    ++    ++ +  L +   +  LNL+D   
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 129 AGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF 188
                   +    +  L   FN     +    ++++  L   VL  N L  S+PR +F  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 189 -PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT 247
            P L  L ++NN                    ++R+       T  L  L LSSN L   
Sbjct: 140 TPKLTTLSMSNN-------------------NLERIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQ 307
           V L     + +L   ++SYN L         +    +E L+ +   +  +    N   L 
Sbjct: 180 VDLS---LIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVE-LT 229

Query: 308 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLR 365
            L L  N ++ +       ++  GL  ++LS+N L          +  L  + + +N+L 
Sbjct: 230 ILKLQHNNLT-DTAWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 366 ---GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTV 422
                   +P     +D S+N+             +    P+   L+ L L+ N    T+
Sbjct: 286 ALNLYGQPIP-TLKVLDLSHNHLLH----------VERNQPQFDRLENLYLDHNSIV-TL 333

Query: 423 PKSIAKCKMLEVLNLGNNQFS 443
             S      L+ L L +N + 
Sbjct: 334 KLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 69/322 (21%), Positives = 113/322 (35%), Gaps = 30/322 (9%)

Query: 83  NAAILFSLHYLRSLNLARTSFNG-TQISSK-LANISSLTYLNLSDAGFAGQIPVQI-SRM 139
           +       H ++ L +    FN    +      N+  LT L L     +  +P  I    
Sbjct: 85  DTYAFAYAHTIQKLYM---GFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 140 ARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANN 199
            +L  L  S N     I    ++   +L    LS N L   +  S+   P L    ++ N
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYN 196

Query: 200 QFGGSIPRFSNASS-SALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGN 258
               ++          A    I  V   +     +LT L L  NNL        +L+   
Sbjct: 197 LL-STLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLT---DTAWLLNYPG 249

Query: 259 LAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN-LKNQSQLQYLYLSENQ 315
           L ++DLSYN L   E    + F  M  LE L +++ +L  +    +    L+ L LS N 
Sbjct: 250 LVEVDLSYNEL---EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306

Query: 316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGN-IHQLPNN 374
           +   +     +     L  L L HN +V  +   +   L+ + L  N    N +  L  N
Sbjct: 307 L-LHVERNQPQFD--RLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRN 362

Query: 375 PIYIDFSNNNFTSSIPADTVNG 396
                  + +    I     +G
Sbjct: 363 VARPAVDDADQHCKIDYQLEHG 384

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 371 LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK 430
           L  + ++ D   +  T  +     + TL +        + +    +  +      +   +
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNN-------QKIVTFKNSTMRKLPAALLDSFR 69

Query: 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVG 490
            +E+LNL + Q  +      +    TI+ L +      N    +      F+        
Sbjct: 70  QVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGF----NAIRYLPPHV--FQN------- 115

Query: 491 LLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSY 550
            +  L  L L  N L+      F N  +L +L +S NNL R       +   L  L LS 
Sbjct: 116 -VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 551 NQLE 554
           N+L 
Sbjct: 175 NRLT 178

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 8e-22
 Identities = 68/335 (20%), Positives = 113/335 (33%), Gaps = 58/335 (17%)

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV--DESSRNYSFSPMLEL 286
               +       S      VQ  +       A L++  + L    D    +      +  
Sbjct: 12  WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH------ITT 65

Query: 287 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
           L +    L  +P      +L+ L +S NQ++  +P       ++ L   +     L    
Sbjct: 66  LVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPVLPPG--LLELSIFSNPLTHL---- 116

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
            P     L  + +  NQL  ++  LP     +  S+N   S          LP       
Sbjct: 117 -PALPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLAS----------LPALPSE-- 162

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI---- 462
            L  L    N+   ++P   +    L+ L++ +NQ +     SL   P  +  L      
Sbjct: 163 -LCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-----SLPTLPSELYKLWAYNNR 212

Query: 463 --KLQKILNIFTSIDFSTNNFKGPILEDVG-LLKSLYGLNLSHNALTGSIPSSFGNLKRL 519
              L  + +    +  S N      L  +  L   L  L +S N LT S+P        L
Sbjct: 213 LTSLPALPSGLKELIVSGNR-----LTSLPVLPSELKELMVSGNRLT-SLPMLPSG---L 263

Query: 520 ESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            SL +  N L+R +P  L  L   + +NL  N L 
Sbjct: 264 LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 1e-19
 Identities = 66/326 (20%), Positives = 107/326 (32%), Gaps = 72/326 (22%)

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLA 290
             +T L++  NNL     L        L  L++S N L ++            L + +  
Sbjct: 61  AHITTLVIPDNNLT---SLPA--LPPELRTLEVSGNQLTSLPVLPPG---LLELSIFSNP 112

Query: 291 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
              L  +P     S L  L++  NQ++  +P         GL  L++S N L     P  
Sbjct: 113 LTHLPALP-----SGLCKLWIFGNQLT-SLPVLP-----PGLQELSVSDNQLASL--PAL 159

Query: 351 IPALRFIDLISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407
              L  +   +NQL      LP  P     +  S+N   S          LP        
Sbjct: 160 PSELCKLWAYNNQLT----SLPMLPSGLQELSVSDNQLAS----------LPTLPSE--- 202

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           L  L    NR   ++P   +    L+ L +  N+ +          P+    L       
Sbjct: 203 LYKLWAYNNRLT-SLPALPSG---LKELIVSGNRLTS--------LPVLPSEL------- 243

Query: 468 LNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
                 +  S N      L  +  L   L  L++  N LT  +P S  +L    +++L  
Sbjct: 244 ----KELMVSGNR-----LTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 527 NNLSRAIPSQLASLYFLSYLNLSYNQ 552
           N LS      L  +      +    +
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 7e-18
 Identities = 71/383 (18%), Positives = 119/383 (31%), Gaps = 92/383 (24%)

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT 231
           + ++ L  ++P  +     +  L + +N              ++L               
Sbjct: 47  VGESGL-TTLPDCLPAH--ITTLVIPDNNL------------TSLPALPP---------- 81

Query: 232 QKLTPLLLSSNNLNGTVQL-DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 290
            +L  L +S N L     L      L  L+        L    S         L  L + 
Sbjct: 82  -ELRTLEVSGNQLT---SLPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIF 129

Query: 291 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
             +L  +P L     LQ L +S+NQ++  +P          L  L   +N L     P  
Sbjct: 130 GNQLTSLPVL--PPGLQELSVSDNQLA-SLPALPSE-----LCKLWAYNNQLTSL--PML 179

Query: 351 IPALRFIDLISNQLRGNIHQLPNNP---IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407
              L+ + +  NQL      LP  P     +   NN  TS          LP        
Sbjct: 180 PSGLQELSVSDNQLA----SLPTLPSELYKLWAYNNRLTS----------LPALPSG--- 222

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           L+ L ++GNR   ++P   ++   L+ L +  N+ +     SL   P+   GL       
Sbjct: 223 LKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-----SL---PMLPSGL------- 263

Query: 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
                S+    N     + E +  L S   +NL  N L+     +   +         + 
Sbjct: 264 ----LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

Query: 528 NLSRAIPSQLASLYFLSYLNLSY 550
               A  S       L      +
Sbjct: 319 RFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 8e-18
 Identities = 56/310 (18%), Positives = 97/310 (31%), Gaps = 67/310 (21%)

Query: 93  LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQF 152
           + +L +         ++S  A    L  L +S       +PV    +  L          
Sbjct: 63  ITTLVI-----PDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

Query: 153 SGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNAS 212
               S +     L      +  N L  S+P      P LQ+L +++NQ            
Sbjct: 117 PALPSGLCK---LW-----IFGNQL-TSLPV---LPPGLQELSVSDNQL----------- 153

Query: 213 SSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL-AV 271
            ++L                +L  L   +N L     L        L +L +S N L ++
Sbjct: 154 -ASLPALPS-----------ELCKLWAYNNQLT---SLPM--LPSGLQELSVSDNQLASL 196

Query: 272 DESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVG 331
                       L  L   + +L  +P L   S L+ L +S N+++  +P          
Sbjct: 197 PTLPSE------LYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT-SLPVLP-----SE 242

Query: 332 LHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRG---NIHQLPNNPIYIDFSNNNFTSS 388
           L  L +S N L     P     L  + +  NQL     ++  L +    ++   N  +  
Sbjct: 243 LKELMVSGNRLTSL--PMLPSGLLSLSVYRNQLTRLPESLIHLSSE-TTVNLEGNPLSER 299

Query: 389 IPADTVNGTL 398
                   T 
Sbjct: 300 TLQALREITS 309

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.6 bits (240), Expect = 3e-21
 Identities = 60/346 (17%), Positives = 103/346 (29%), Gaps = 89/346 (25%)

Query: 209 SNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS 268
            + S ++    I   Y+       K     L   N N  V L K   +   ++L L+  +
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 269 LAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 328
           L    SS   +  P + +L +    L  +P L   + L+YL   +N++S  +P       
Sbjct: 71  L----SSLPDNLPPQITVLEITQNALISLPEL--PASLEYLDACDNRLS-TLPELP---- 119

Query: 329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSS 388
              L  L++ +N L     P     L +I+  +NQL                        
Sbjct: 120 -ASLKHLDVDNNQLTML--PELPALLEYINADNNQLT----------------------- 153

Query: 389 IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPC 448
                    LP+       L+ L +  N+    +P+       LE L++  N        
Sbjct: 154 --------MLPELPTS---LEVLSVRNNQ-LTFLPELPES---LEALDVSTNLLE----- 193

Query: 449 SLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS 508
           SL   P                                      ++        N +T  
Sbjct: 194 SL---PAVPVRN----------------------------HHSEETEIFFRCRENRIT-H 221

Query: 509 IPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           IP +  +L    ++ L  N LS  I   L+        +       
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 9e-11
 Identities = 53/327 (16%), Positives = 93/327 (28%), Gaps = 65/327 (19%)

Query: 93  LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQF 152
                L   + N      K   I+  + L L+    +  +P  +    ++  L+ + N  
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL 92

Query: 153 SGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNAS 212
             S+     E   +L      DN L  ++P        L+ L + NNQ            
Sbjct: 93  I-SLP----ELPASLEYLDACDNRLS-TLPE---LPASLKHLDVDNNQL----------- 132

Query: 213 SSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL-AV 271
            + L                 L  +   +N L     L +     +L  L +  N L  +
Sbjct: 133 -TMLPELP-----------ALLEYINADNNQLT---MLPE--LPTSLEVLSVRNNQLTFL 175

Query: 272 DESSRNYSFSPMLELLNLASCKLREIP-----NLKNQSQLQYLYLSENQISREIPNWIWR 326
            E   +      LE L++++  L  +P     N  ++    +    EN+I   IP  I  
Sbjct: 176 PELPES------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENILS 228

Query: 327 VSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFT 386
           +       + L  N L       S          +          P     +     N  
Sbjct: 229 LD--PTCTIILEDNPLS------SRIRESLSQQTAQPDYHG----PRIYFSMSDGQQNTL 276

Query: 387 SSIPADTVNGTLPDTFPRNCLLQTLDL 413
               AD V    P+    +        
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAF 303

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 4e-21
 Identities = 90/429 (20%), Positives = 139/429 (32%), Gaps = 88/429 (20%)

Query: 140 ARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLAN 198
           A +  +D S N  +  ++   +  L +L    +   +    I  + F     L  L+L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 199 NQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILS-LG 257
           NQF   +       + A +                L  L L+  NL+G V        L 
Sbjct: 89  NQFL-QLE------TGAFN------------GLANLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLK----NQSQLQYLYLSE 313
           +L  L L  N++   + +  +       +L+L   K++ I               L LS 
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 314 NQISREIPNWIWRVS------VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGN 367
             +      W+             +  L+LS N            A RF D I+   +  
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF------KESMAKRFFDAIAG-TKIQ 242

Query: 368 IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI- 426
              L N+        +         T  G           ++T DL+ ++    + KS+ 
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG------VKTCDLSKSKIF-ALLKSVF 295

Query: 427 AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486
           +    LE L L  N+                      + KI           N F G   
Sbjct: 296 SHFTDLEQLTLAQNE----------------------INKI---------DDNAFWG--- 321

Query: 487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQL-ASLYFLSY 545
                L  L  LNLS N L       F NL +LE LDLS N++  A+  Q    L  L  
Sbjct: 322 -----LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKE 375

Query: 546 LNLSYNQLE 554
           L L  NQL+
Sbjct: 376 LALDTNQLK 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.4 bits (237), Expect = 8e-21
 Identities = 66/408 (16%), Positives = 132/408 (32%), Gaps = 72/408 (17%)

Query: 155 SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPM--LQQLQLANNQFGGSIPRFSNAS 212
               I      + V   +  +     +     +  +   + +   N+             
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST------------ 62

Query: 213 SSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVD 272
                  ++++ + L    +++  L L+   +   +          + KL + +N++   
Sbjct: 63  -------MRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL 114

Query: 273 ESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVS 328
                  F  +  L +L L    L  +P     N  +L  L +S N + R I +  ++ +
Sbjct: 115 PPH---VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQ-A 169

Query: 329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFT 386
              L  L LS N L        IP+L   ++  N L      L        +D S+N+  
Sbjct: 170 TTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL----STLAIPIAVEELDASHNSIN 224

Query: 387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKF 446
             +                  L  L L  N    T    +     L  ++L  N+     
Sbjct: 225 V-VR--------GPVNVE---LTILKLQHN--NLTDTAWLLNYPGLVEVDLSYNE----- 265

Query: 447 PCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
                     ++ +       +     +  S N     +      + +L  L+LSHN L 
Sbjct: 266 ----------LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314

Query: 507 GSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
             +  +     RLE+L L  N++   +   L++ + L  L LS+N  +
Sbjct: 315 -HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 85/479 (17%), Positives = 159/479 (33%), Gaps = 58/479 (12%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGF 128
           +D+ T+ +  G E+     +L+  + +    ++    ++ +  L +   +  LNL+D   
Sbjct: 34  IDMQTQDVYFGFED----ITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 87

Query: 129 AGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF 188
                   +    +  L   FN     +    ++++  L   VL  N L  S+PR +F  
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 189 -PMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRV-YSCLGLRTQKLTPLLLS 240
            P L  L ++NN     I   +  ++++L        ++  V  S +      L    +S
Sbjct: 146 TPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVS 200

Query: 241 SNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNL 300
            N       L  +     + +LD S+NS+ V     N      L +L L    L +   L
Sbjct: 201 YN------LLSTLAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL 250

Query: 301 KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP-YSIPALRFIDL 359
            N   L  + LS N++  +I    +   +  L  L +S+N LV        IP L+ +DL
Sbjct: 251 LNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

Query: 360 ISNQLR---GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN 416
             N L     N  Q       +   +N+   ++           T      L+ L L+ N
Sbjct: 309 SHNHLLHVERNQPQFDRL-ENLYLDHNSIV-TLK--------LSTHHT---LKNLTLSHN 355

Query: 417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF 476
                              N+      D       D  +       +  K          
Sbjct: 356 DWDCN-------SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS 535
           +  +    +    G   +   +N   +            L+  E L+  +N L   +  
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 18/173 (10%)

Query: 382 NNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ 441
             N     P       +      +C+   + ++                  +++   N+ 
Sbjct: 6   RYNVKPRQPEYK---CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 442 FSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLS 501
              K P +L D+   ++ L++   +I  I       T  F            ++  L + 
Sbjct: 63  MR-KLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAY--------AHTIQKLYMG 107

Query: 502 HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            NA+    P  F N+  L  L L  N+LS        +   L+ L++S N LE
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 63/307 (20%), Positives = 111/307 (36%), Gaps = 44/307 (14%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS 291
              L L +N +   ++     +L NL  L L  N ++        +F+P+  LE L L+ 
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG---AFAPLVKLERLYLSK 109

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
            +L+E+P    K    LQ L + EN+I++ +   ++   +  +  + L  N L       
Sbjct: 110 NQLKELPEKMPKT---LQELRVHENEITK-VRKSVFN-GLNQMIVVELGTNPLKSSGIEN 164

Query: 350 SI----PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
                   L +I +    +      LP +   +    N  T  +           +    
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVD--------AASLKGL 215

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ 465
             L  L L+ N        S+A    L  L+L NN+   K P  L D           +Q
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK--------YIQ 266

Query: 466 KIL---NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSI--PSSFGNLKRLE 520
            +    N  ++I   +N+F  P         S  G++L  N +      PS+F  +    
Sbjct: 267 VVYLHNNNISAI--GSNDFCPPGYNT--KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 521 SLDLSMN 527
           ++ L   
Sbjct: 323 AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 54/279 (19%), Positives = 98/279 (35%), Gaps = 43/279 (15%)

Query: 284 LELLNLASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL 342
           L ++  +   L ++P +L        L L  N+I+         +    LH L L +N +
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKI 88

Query: 343 --VGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPD 400
             +   A   +  L  + L  NQL+    ++P     +    N  T  +           
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK-VR--------KS 139

Query: 401 TFPRNCLLQTLDLNGNRPQGTV--PKSIAKCKMLEVLNLGNNQFS---DKFPCSLYDAPI 455
            F     +  ++L  N  + +     +    K L  + + +   +      P SL     
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL----- 194

Query: 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN 515
                  +L    N  T +D ++   KG        L +L  L LS N+++     S  N
Sbjct: 195 ------TELHLDGNKITKVDAAS--LKG--------LNNLAKLGLSFNSISAVDNGSLAN 238

Query: 516 LKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
              L  L L+ N L + +P  LA   ++  + L  N + 
Sbjct: 239 TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 59/316 (18%), Positives = 105/316 (33%), Gaps = 81/316 (25%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
           + A LDL  N +      ++  F     L  L L + K+ +I         +L+ LYLS+
Sbjct: 53  DTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNIHQL 371
           NQ+  E+P  + +     L  L +  N +   +      +  +  ++L +N L+     +
Sbjct: 110 NQLK-ELPEKMPK----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK--SSGI 162

Query: 372 PNNP-------IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK 424
            N          YI  ++ N T+          +P   P +  L  L L+GN+       
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITT----------IPQGLPPS--LTELHLDGNKITKVDAA 210

Query: 425 SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP 484
           S+     L  L L  N  S                                    +    
Sbjct: 211 SLKGLNNLAKLGLSFNSISA-------------------------------VDNGSLAN- 238

Query: 485 ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR------AIPSQLA 538
                     L  L+L++N L   +P    + K ++ + L  NN+S         P    
Sbjct: 239 -------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 539 SLYFLSYLNLSYNQLE 554
                S ++L  N ++
Sbjct: 291 KKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 28/284 (9%)

Query: 172 LSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVY 224
           L +N +   I    F+    L  L L NN+    I   + A    L+       Q+K + 
Sbjct: 59  LQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELP 116

Query: 225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM- 283
             +    + L  L +  N +   V+      L  +  ++L  N L         +F  M 
Sbjct: 117 EKM---PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMK 171

Query: 284 -LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL 342
            L  + +A   +  IP       L  L+L  N+I+ ++     +  +  L  L LS N +
Sbjct: 172 KLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKIT-KVDAASLK-GLNNLAKLGLSFNSI 228

Query: 343 VGFQ--APYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTL 398
                 +  + P LR + L +N+L      L ++     +   NNN + +I ++      
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPG 287

Query: 399 PDTFPRNCLLQTLDLNGNRPQGT-VPKSIAKC-KMLEVLNLGNN 440
            +T   +     + L  N  Q   +  S  +C  +   + LGN 
Sbjct: 288 YNTKKAS--YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 59/313 (18%), Positives = 115/313 (36%), Gaps = 40/313 (12%)

Query: 54  CDWSGVDCDEAG----------HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSF 103
           C    V C + G              LDL    I+  I++     +L  L +L L     
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGD-FKNLKNLHTLIL---IN 85

Query: 104 NG-TQISSK-LANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRW 161
           N  ++IS    A +  L  L LS      ++P ++ +   L  L    N+ +  +    +
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEIT-KVRKSVF 141

Query: 162 EHLLNLVCAVLSDNSL-DGSIPRSMFE-FPMLQQLQLANNQFGGSIPR--FSNASSSALD 217
             L  ++   L  N L    I    F+    L  +++A+     +IP+    + +   LD
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLD 200

Query: 218 T-QIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSR 276
             +I +V +        L  L LS N+++  V    + +  +L +L L+ N L   +   
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV--KVPG 257

Query: 277 NYSFSPMLELLNLASCKLREIPN--------LKNQSQLQYLYLSENQIS-REIPNWIWRV 327
             +    ++++ L +  +  I +           ++    + L  N +   EI    +R 
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR- 316

Query: 328 SVVGLHCLNLSHN 340
            V     + L + 
Sbjct: 317 CVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 58/313 (18%), Positives = 103/313 (32%), Gaps = 76/313 (24%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
           +   LDL  N +      R   F     L  L L + K+ +I         +LQ LY+S+
Sbjct: 55  DTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNIHQ- 370
           N +  EIP  +       L  L +  N +          +  +  I++  N L  +  + 
Sbjct: 112 NHLV-EIPPNLPS----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 371 ---LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIA 427
                    Y+  S    T           +P   P    L  L L+ N+ Q    + + 
Sbjct: 167 GAFDGLKLNYLRISEAKLTG----------IPKDLPET--LNELHLDHNKIQAIELEDLL 214

Query: 428 KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487
           +   L  L LG+NQ                                      +       
Sbjct: 215 RYSKLYRLGLGHNQIRM-------------------------------IENGSLSF---- 239

Query: 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF----- 542
               L +L  L+L +N L+  +P+   +LK L+ + L  NN+++   +    + F     
Sbjct: 240 ----LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 543 -LSYLNLSYNQLE 554
             + ++L  N + 
Sbjct: 295 YYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 53/274 (19%), Positives = 91/274 (33%), Gaps = 34/274 (12%)

Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL- 342
           L ++  +   L+ +P   +      L L  N IS    +    +    L+ L L +N + 
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD-TTLLDLQNNDISELRKDDFKGLQ--HLYALVLVNNKIS 91

Query: 343 -VGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDT 401
            +  +A   +  L+ + +  N L      LP++ + +   +N     +P           
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRK-VP--------KGV 142

Query: 402 FPRNCLLQTLDLNGNR-PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGL 460
           F     +  +++ GN                L  L +   + +        D P T+  L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK----DLPETLNEL 198

Query: 461 DIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLE 520
            +   KI  I         +              LY L L HN +      S   L  L 
Sbjct: 199 HLDHNKIQAI------ELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

Query: 521 SLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            L L  N LSR +P+ L  L  L  + L  N + 
Sbjct: 245 ELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 60/306 (19%), Positives = 114/306 (37%), Gaps = 43/306 (14%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS 291
            T L L +N+++  ++ D    L +L  L L  N +         +FSP+  L+ L ++ 
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI---SKIHEKAFSPLRKLQKLYISK 111

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
             L EIP     +   L  L + +N+I + +P  ++   +  ++C+ +  N L       
Sbjct: 112 NHLVEIPPNLPSS---LVELRIHDNRIRK-VPKGVFS-GLRNMNCIEMGGNPLENSGFEP 166

Query: 350 SI---PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
                  L ++ +   +L G    LP     +   +N   + I          +   R  
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA-IE--------LEDLLRYS 217

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            L  L L  N+ +     S++    L  L+L NN+ S + P  L D           LQ 
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK--------LLQV 268

Query: 467 IL---NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSI--PSSFGNLKRLES 521
           +    N  T +    N+F    +          G++L +N +      P++F  +    +
Sbjct: 269 VYLHTNNITKV--GVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 522 LDLSMN 527
           +     
Sbjct: 325 IQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 63/334 (18%), Positives = 108/334 (32%), Gaps = 45/334 (13%)

Query: 117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNS 176
            L  +  SD G    +P +IS       LD   N  S  +    ++ L +L   VL +N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 177 LDGSIPRSMFE-FPMLQQLQLANNQFGGSIPR--FSNASSSALDT-QIKRVYSCLGLRTQ 232
           +   I    F     LQ+L ++ N     IP    S+     +   +I++V   +    +
Sbjct: 90  IS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 292
            +  + +  N L  +           L  L +S   L    +         L  L+L   
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL----TGIPKDLPETLNELHLDHN 203

Query: 293 KLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP-Y 349
           K++ I    L   S+L  L L  NQI   I N      +  L  L+L +N L    A   
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLS-FLPTLRELHLDNNKLSRVPAGLP 261

Query: 350 SIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409
            +  L+ + L +N +                      + +  +                 
Sbjct: 262 DLKLLQVVYLHTNNI----------------------TKVGVNDFCPVGFGVKRAY--YN 297

Query: 410 TLDLNGNRPQ-GTVPKSIAKC-KMLEVLNLGNNQ 441
            + L  N      V  +  +C      +  GN +
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 64/336 (19%), Positives = 116/336 (34%), Gaps = 63/336 (18%)

Query: 54  CDWSGVDCDEAG----------HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSF 103
           C    V C + G              LDL    IS  +        L +L +L L     
Sbjct: 33  CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-LRKDD-FKGLQHLYALVLVNNKI 90

Query: 104 NGTQISSK-LANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWE 162
             ++I  K  + +  L  L +S      +IP  +     LV L    N+    +    + 
Sbjct: 91  --SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS--SLVELRIHDNRIR-KVPKGVFS 144

Query: 163 HLLNLVCAVLSDNSL-DGSIPRSMFEFPMLQQLQLANNQFGGSIPR--FSNASSSALDTQ 219
            L N+ C  +  N L +       F+   L  L+++  +    IP+              
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPKDLPET--------- 194

Query: 220 IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYS 279
                         L  L L  N +   ++L+ +L    L +L L +N +       N S
Sbjct: 195 --------------LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR---MIENGS 236

Query: 280 FSPM--LELLNLASCKLREIP-NLKNQSQLQYLYLSENQISREIPNWIWR-----VSVVG 331
            S +  L  L+L + KL  +P  L +   LQ +YL  N I+ ++    +      V    
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 332 LHCLNLSHNFLVGFQAPYS----IPALRFIDLISNQ 363
            + ++L +N +  ++   +    +     I   + +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 60/285 (21%), Positives = 94/285 (32%), Gaps = 59/285 (20%)

Query: 279 SFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 336
                   L L S KL+ +P+      +QL  L LS N +S +            L  L+
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 337 LSHNFLVGFQAP-YSIPALRFIDLISNQLR-----GNIHQLPNNPIYIDFSNNNFTSSIP 390
           LS N ++   +    +  L  +D   + L+          L N  IY+D S+ +      
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRV-AF 142

Query: 391 ADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCS 449
                      F     L+ L + GN  Q      I  + + L  L+L   Q        
Sbjct: 143 --------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL------- 187

Query: 450 LYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSI 509
                                   +  S   F          L SL  LN+SHN      
Sbjct: 188 ----------------------EQL--SPTAFNS--------LSSLQVLNMSHNNFFSLD 215

Query: 510 PSSFGNLKRLESLDLSMNNLSRAIPSQLASL-YFLSYLNLSYNQL 553
              +  L  L+ LD S+N++  +   +L      L++LNL+ N  
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 50/236 (21%), Positives = 81/236 (34%), Gaps = 16/236 (6%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFS-GSISSIRWEHLLNLVCAVLSD 174
           SS T L L              ++ +L  L  S N  S     S       +L    LS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 175 NSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR--FSNASS-SALD---TQIKRVYSCLG 228
           N +  ++  +      L+ L   ++          F +  +   LD   T  +  ++ + 
Sbjct: 88  NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LEL 286
                L  L ++ N+       D    L NL  LDLS   L   E     +F+ +  L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQV 203

Query: 287 LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 340
           LN++      +     K  + LQ L  S N I         +     L  LNL+ N
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 63/288 (21%), Positives = 96/288 (33%), Gaps = 56/288 (19%)

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT 231
            +   L  S+P  +       +L+L +N+         +      D            + 
Sbjct: 14  CNSKGLT-SVPTGIP--SSATRLELESNKL-------QSLPHGVFD------------KL 51

Query: 232 QKLTPLLLSSNNLN-GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA 290
            +LT L LSSN L+             +L  LDLS+N +     S N+     LE L+  
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQ 109

Query: 291 SCKLREIPN---LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA 347
              L+++       +   L YL +S         N I+   +  L  L ++ N       
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN-GLSSLEVLKMAGNSFQENFL 167

Query: 348 PYSI---PALRFIDLISNQLRGNIHQLPNNP-------IYIDFSNNNFTSSIPADTVNGT 397
           P        L F+DL   QL     QL             ++ S+NNF S +        
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE----QLSPTAFNSLSSLQVLNMSHNNFFS-LD------- 215

Query: 398 LPDTFPRNCLLQTLDLNGNRPQGTVPKSI--AKCKMLEVLNLGNNQFS 443
               +     LQ LD + N    T  K         L  LNL  N F+
Sbjct: 216 -TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 37/228 (16%)

Query: 335 LNLSHNFLVGFQAPYSIPA-LRFIDLISNQLR-------GNIHQLPNNPIYIDFSNNNFT 386
           +  +   L     P  IP+    ++L SN+L+         + QL      +  S+N  +
Sbjct: 12  IRCNSKGLTSV--PTGIPSSATRLELESNKLQSLPHGVFDKLTQL----TKLSLSSNGLS 65

Query: 387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKF 446
                   +            L+ LDL+ N    T+  +    + LE L+  ++      
Sbjct: 66  FKGCCSQSDFGTTS-------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 117

Query: 447 PCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
             S++ +   +  LDI                  F G        L SL  L ++ N+  
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVA------FNGIFNG--------LSSLEVLKMAGNSFQ 163

Query: 507 GSIPS-SFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            +     F  L+ L  LDLS   L +  P+   SL  L  LN+S+N  
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 55/254 (21%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA 129
           L LS+  +S     +   F    L+ L+L   SFN          + +++      + F 
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDL---SFN---------GVITMS------SNFL 98

Query: 130 GQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-F 188
           G        + +L  LDF  +          +  L NL+   +S           +F   
Sbjct: 99  G--------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGL 149

Query: 189 PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV 248
             L+ L++A N F  +                           + LT L LS   L   +
Sbjct: 150 SSLEVLKMAGNSFQENFL------PDIFT------------ELRNLTFLDLSQCQLE-QL 190

Query: 249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN---LKNQ 303
                 SL +L  L++S+N+    ++     +  +  L++L+ +   +            
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 304 SQLQYLYLSENQIS 317
           S L +L L++N  +
Sbjct: 248 SSLAFLNLTQNDFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 58/300 (19%), Positives = 100/300 (33%), Gaps = 77/300 (25%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
           N   L+L  N++ + ++    +F     LE+L L    +R+I        + L  L L +
Sbjct: 76  NTRYLNLMENNIQMIQAD---TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPN 373
           N ++  IP+  +   +  L  L L +N +       SIP+  F  +    L         
Sbjct: 133 NWLT-VIPSGAFE-YLSKLRELWLRNNPIE------SIPSYAFNRV--PSLM-------- 174

Query: 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433
               +D         I      G L +       L+ L+L           ++     LE
Sbjct: 175 ---RLDLGELKKLEYISEGAFEG-LFN-------LKYLNLGMC--NIKDMPNLTPLVGLE 221

Query: 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK 493
            L +  N F +                                   +F G        L 
Sbjct: 222 ELEMSGNHFPE-------------------------------IRPGSFHG--------LS 242

Query: 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           SL  L + ++ ++    ++F  L  L  L+L+ NNLS         L +L  L+L +N  
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 23/237 (9%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
           S+  YLNL +             +  L  L    N     I    +  L +L    L DN
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 176 SLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFSNASSSALDT-------QIKRVYSCL 227
            L   IP   FE    L++L L NN    SIP ++     +L         +++ +    
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 228 GLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LE 285
                 L  L L   N+     +  +  L  L +L++S N           SF  +  L+
Sbjct: 192 FEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPG---SFHGLSSLK 245

Query: 286 LLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 340
            L + + ++  I        + L  L L+ N +S  +P+ ++   +  L  L+L HN
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT-PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 5e-13
 Identities = 55/281 (19%), Positives = 83/281 (29%), Gaps = 78/281 (27%)

Query: 279 SFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 336
                   LNL    ++ I     ++   L+ L L  N I  +I    +   +  L+ L 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN-GLASLNTLE 129

Query: 337 LSHNFL--VGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTV 394
           L  N+L  +   A   +  LR + L +N +                       SIP    
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPI----------------------ESIP---- 163

Query: 395 NGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDA 453
                  F R   L  LDL   +    + +        L+ LNLG     D         
Sbjct: 164 ----SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--------- 210

Query: 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF 513
                         +   T                   L  L  L +S N      P SF
Sbjct: 211 --------------MPNLTP------------------LVGLEELEMSGNHFPEIRPGSF 238

Query: 514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
             L  L+ L +  + +S    +    L  L  LNL++N L 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 39/185 (21%), Positives = 59/185 (31%), Gaps = 33/185 (17%)

Query: 90  LHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGFAGQIPVQI-SRMARLVALDF 147
           L  LR L L         I S     + SL  L+L +      I       +  L  L+ 
Sbjct: 146 LSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 148 SFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIP 206
                   + ++    L+ L    +S N     I    F     L++L + N+Q    I 
Sbjct: 204 GMCNIK-DMPNLT--PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 207 R--FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDL 264
           R  F                         L  L L+ NNL+ ++  D    L  L +L L
Sbjct: 259 RNAFDG--------------------LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297

Query: 265 SYNSL 269
            +N  
Sbjct: 298 HHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 60/300 (20%), Positives = 105/300 (35%), Gaps = 77/300 (25%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
           N   L+L  N + + + +   SF  +  LE+L L+   +R I        + L  L L +
Sbjct: 65  NTRLLNLHENQIQIIKVN---SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPN 373
           N+++  IPN    V +  L  L L +N +       SIP+  F  +    LR        
Sbjct: 122 NRLT-TIPNG-AFVYLSKLKELWLRNNPIE------SIPSYAFNRI--PSLR-------- 163

Query: 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433
               +D       S I      G L +       L+ L+L           ++     L+
Sbjct: 164 ---RLDLGELKRLSYISEGAFEG-LSN-------LRYLNLAMC--NLREIPNLTPLIKLD 210

Query: 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK 493
            L+L  N                               ++I     +F+G        L 
Sbjct: 211 ELDLSGNHL-----------------------------SAI--RPGSFQG--------LM 231

Query: 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            L  L +  + +     ++F NL+ L  ++L+ NNL+         L+ L  ++L +N  
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 59/255 (23%), Positives = 87/255 (34%), Gaps = 31/255 (12%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
           ++   LNL +             +  L  L  S N    +I    +  L NL    L DN
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 176 SLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL 234
            L  +IP   F     L++L L NN    SIP      S A +            R   L
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIP------SYAFN------------RIPSL 162

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 294
             L L        +       L NL  L+L+  +L    +         L+ L+L+   L
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL---IKLDELDLSGNHL 219

Query: 295 REIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL--VGFQAPYS 350
             I     +    LQ L++ ++QI     N    +    L  +NL+HN L  +       
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ--SLVEINLAHNNLTLLPHDLFTP 277

Query: 351 IPALRFIDLISNQLR 365
           +  L  I L  N   
Sbjct: 278 LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 61/280 (21%), Positives = 87/280 (31%), Gaps = 76/280 (27%)

Query: 279 SFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 336
             S    LLNL   +++ I     K+   L+ L LS N I          ++   L+ L 
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA--NLNTLE 118

Query: 337 LSHNFLVGFQAPYSIPALRFIDLIS-NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVN 395
           L  N L       +IP   F+ L    +L      L NNPI           SIP     
Sbjct: 119 LFDNRLT------TIPNGAFVYLSKLKELW-----LRNNPI----------ESIP----- 152

Query: 396 GTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAP 454
                 F R   L+ LDL   +    + +        L  LNL                 
Sbjct: 153 ---SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----------- 198

Query: 455 ITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514
                                    N           L  L  L+LS N L+   P SF 
Sbjct: 199 ----------------------EIPNLTP--------LIKLDELDLSGNHLSAIRPGSFQ 228

Query: 515 NLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            L  L+ L +  + +     +   +L  L  +NL++N L 
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 56/253 (22%), Positives = 88/253 (34%), Gaps = 40/253 (15%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG-TQISSK-LANISSLTYLNLSDAG 127
           L+L    I     N+     L +L  L L+R   N    I       +++L  L L D  
Sbjct: 69  LNLHENQIQIIKVNS--FKHLRHLEILQLSR---NHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 128 FAGQIPVQI-SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF 186
               IP      +++L  L    N    SI S  +  + +L    L +      I    F
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 187 E-FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245
           E    L+ L LA       IP  +                        L  L LS N+L+
Sbjct: 182 EGLSNLRYLNLAMCNL-REIPNLTPLIK--------------------LDELDLSGNHLS 220

Query: 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LK 301
             ++      L +L KL +  + + V E +   +F     L  +NLA   L  +P+    
Sbjct: 221 -AIRPGSFQGLMHLQKLWMIQSQIQVIERN---AFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 302 NQSQLQYLYLSEN 314
               L+ ++L  N
Sbjct: 277 PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 47/205 (22%), Positives = 72/205 (35%), Gaps = 35/205 (17%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKL-ANISSLTYLNLSDAGF 128
           L+L    ++  I N A    L  L+ L L         I S     I SL  L+L +   
Sbjct: 117 LELFDNRLTT-IPNGA-FVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKR 172

Query: 129 AGQIPVQI-SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE 187
              I       ++ L  L+ +       I ++    L+ L    LS N L  +I    F+
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT--PLIKLDELDLSGNHLS-AIRPGSFQ 228

Query: 188 -FPMLQQLQLANNQFGGSIPR--FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNL 244
               LQ+L +  +Q    I R  F N                     Q L  + L+ NNL
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDN--------------------LQSLVEINLAHNNL 267

Query: 245 NGTVQLDKILSLGNLAKLDLSYNSL 269
              +  D    L +L ++ L +N  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 52/304 (17%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLAS 291
           +  L LS+N +   +    +    NL  L L+ N +   E     SFS    LE L+L+ 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEED---SFSSLGSLEHLDLSY 109

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF---Q 346
             L  + +   K  S L +L L  N     +        +  L  L + +         +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
               +  L  +++ ++ L+                      S          P +     
Sbjct: 169 DFAGLTFLEELEIDASDLQ----------------------SYE--------PKSLKSIQ 198

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            +  L L+  +    +   +     +E L L +          L  +      L  K   
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL--STGETNSLIKKFT- 255

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS-FGNLKRLESLDLS 525
               F ++  +  +    +++ +  +  L  L  S N L  S+P   F  L  L+ + L 
Sbjct: 256 ----FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309

Query: 526 MNNL 529
            N  
Sbjct: 310 TNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 53/302 (17%), Positives = 99/302 (32%), Gaps = 51/302 (16%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
            +  LDLS N +       N        L+ L L S  +  I      +   L++L LS 
Sbjct: 53  AVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLR----GNIH 369
           N +S                  NLS ++         + +L F++L+ N  +     ++ 
Sbjct: 110 NYLS------------------NLSSSWFKP------LSSLTFLNLLGNPYKTLGETSLF 145

Query: 370 QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC 429
                   +   N +  + I            F     L+ L+++ +  Q   PKS+   
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQ--------RKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

Query: 430 KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV 489
           + +  L L   Q          D   +++ L+++    L+ F   + ST      I    
Sbjct: 198 QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR-DTDLDTFHFSELSTGETNSLIK--- 252

Query: 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS 549
               +   + ++  +L   +      +  L  L+ S N L          L  L  + L 
Sbjct: 253 --KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 550 YN 551
            N
Sbjct: 310 TN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 55/316 (17%), Positives = 95/316 (30%), Gaps = 71/316 (22%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
            ++  L+LS+          + R   L AL  + N  + +I    +  L +L    LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 176 SLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL 234
            L  ++  S F+    L  L L  N +  ++   S  S                    KL
Sbjct: 111 YL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFS-----------------HLTKL 151

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 294
             L + + +    +Q      L  L +L++  +                          L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-------------------------DL 186

Query: 295 REIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ------ 346
           +      LK+   + +L L   Q    +           + CL L    L  F       
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVD-VTSSVECLELRDTDLDTFHFSELST 244

Query: 347 ----APYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLPD 400
               +       R + +    L   +  L      + ++FS N    S+P          
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVP--------DG 295

Query: 401 TFPRNCLLQTLDLNGN 416
            F R   LQ + L+ N
Sbjct: 296 IFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 28/213 (13%)

Query: 348 PYSIPA-LRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF 402
           P  +   ++ +DL +N++      ++ +  N    +  ++N   + I          D+F
Sbjct: 47  PSGLTEAVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINT-IE--------EDSF 96

Query: 403 PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI 462
                L+ LDL+ N               L  LNL  N +      SL+     ++ L +
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 463 KLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESL 522
                    T I     +F G        L  L  L +  + L    P S  +++ +  L
Sbjct: 157 GNMDTF---TKI--QRKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
            L M      +   +     +  L L    L+ 
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 42/246 (17%), Positives = 78/246 (31%), Gaps = 52/246 (21%)

Query: 89  SLHYLRSLNLARTSFNGTQISS----KLANISSLTYLNLSDAGFAGQIPVQISRMARLVA 144
           SL  L  L+L     +   +S+        +SSLT+LNL                     
Sbjct: 98  SLGSLEHLDL-----SYNYLSNLSSSWFKPLSSLTFLNLLG------------------- 133

Query: 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGG 203
                N +     +  + HL  L    + +      I R  F     L++L++  +    
Sbjct: 134 -----NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-Q 187

Query: 204 SIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLSSNNLNG-------TVQL 250
           S    S  S   +        Q   +       T  +  L L   +L+        T + 
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQY 308
           + ++       + ++  SL       N      L  L  +  +L+ +P+      + LQ 
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 309 LYLSEN 314
           ++L  N
Sbjct: 306 IWLHTN 311

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 74/477 (15%), Positives = 133/477 (27%), Gaps = 83/477 (17%)

Query: 79  GGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISR 138
           G  ++    F      S   A      T   S    +++LT L+  ++         I +
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTG--IEK 62

Query: 139 MARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLAN 198
           +  L  L  + N     I+++      NL       N L  ++  +      L  L    
Sbjct: 63  LTGLTKLICTSNN----ITTLDLSQNTNLTYLACDSNKL-TNLDVT--PLTKLTYLNCDT 115

Query: 199 NQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGN 258
           N+    +    N   + L+     +         +LT L    N          +     
Sbjct: 116 NKLT-KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI---TKLDVTPQTQ 171

Query: 259 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 318
           L  LD S+N +   + S+N     +L  LN  +  + ++  L    QL +L  S N+++ 
Sbjct: 172 LTTLDCSFNKITELDVSQN----KLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLT- 225

Query: 319 EIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYI 378
           EI        +  L   + S N L       ++  L  +  I   L             I
Sbjct: 226 EIDV----TPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLL-----------EI 269

Query: 379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLG 438
           D ++N       A+            N  L  LD             +++   L  L L 
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLN 326

Query: 439 NNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGL 498
           N +                              T +D S                 L  L
Sbjct: 327 NTEL-----------------------------TELDVS-------------HNTKLKSL 344

Query: 499 NLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           +  +  +     S  G +  L +   +           L +      ++       G
Sbjct: 345 SCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 2e-15
 Identities = 43/273 (15%), Positives = 91/273 (33%), Gaps = 43/273 (15%)

Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
           +      S  +++I      ++     L +  ++  +        +  +  +  +++ + 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK 56

Query: 344 GFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIP-ADTVNGTLPD 400
             Q    +P +  + L  N+L  +I  L N     ++    N         D        
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK----- 110

Query: 401 TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGL 460
                  L++L L  N    +    +     LE L LGNN+ +D            I  L
Sbjct: 111 -------LKSLSLEHN--GISDINGLVHLPQLESLYLGNNKITD------------ITVL 149

Query: 461 DIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLE 520
             +L K+     ++    N      +  +  L  L  L LS N ++  +  +   LK L+
Sbjct: 150 S-RLTKL----DTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLD 200

Query: 521 SLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            L+L          +  ++L   + +  +   L
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 8e-13
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 36/231 (15%)

Query: 162 EHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIK 221
           +     +   L   S+  ++ ++  E   + Q+   N+                    ++
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI----------------KSVQ 59

Query: 222 RVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS 281
            +          +T L L+ N L     +  + +L NL  L L  N +    S ++    
Sbjct: 60  GIQYL-----PNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLSSLKDL--- 108

Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
             L+ L+L    + +I  L +  QL+ LYL  N+I+ +I        +  L  L+L  N 
Sbjct: 109 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITV---LSRLTKLDTLSLEDNQ 164

Query: 342 LVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIP 390
           +        +  L+ + L  N +  ++  L        ++  +    +   
Sbjct: 165 ISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 3e-12
 Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 39/300 (13%)

Query: 89  SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFS 148
           +       NL          +     ++S+  +  +++     +   I  +  +  L  +
Sbjct: 19  AFAETIKDNL---KKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 73

Query: 149 FNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRF 208
            N+ +  I  +   +L NL    L +N +   +  S+ +   L+ L L +N     I   
Sbjct: 74  GNKLT-DIKPL--TNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGI-SDINGL 127

Query: 209 SNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS 268
            +                      +L  L L +N +     +  +  L  L  L L  N 
Sbjct: 128 VHLP--------------------QLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQ 164

Query: 269 LAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 328
           +         +    L+ L L+   + ++  L     L  L L   +   +  N   + +
Sbjct: 165 I---SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN--HQSN 219

Query: 329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSS 388
           +V  + +  +   LV  +           ++  +               +          
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 56/338 (16%), Positives = 101/338 (29%), Gaps = 32/338 (9%)

Query: 230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELL 287
              KL  L++S N +   + +        L  LDLS+N L         S  P   L+ L
Sbjct: 43  SLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL------VKISCHPTVNLKHL 95

Query: 288 NLASCKLREIPN---LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVG 344
           +L+      +P      N SQL++L LS   + +     I  +++  +  L +       
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV--LLVLGETYGE 153

Query: 345 FQAPYSIPALRFIDLISNQLRGNIHQLP-----NNPIYIDFSNNNFTSSIPADTVNGTLP 399
            + P  +       L                       ++ SN          +   ++ 
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKM---LEVLNLGNNQFSDKFPCSLYDAPIT 456
                N  L  L LN           I +      +   ++ N +   +     +D   T
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL 516
                      L   +     ++ F  P      +  ++   N + +            +
Sbjct: 274 S----------LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 517 KRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
                LD S N L+  +      L  L  L L  NQL+
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 70/449 (15%), Positives = 136/449 (30%), Gaps = 79/449 (17%)

Query: 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF-PMLQQLQLANNQFGG 203
           L+ S N  S  + +     L  L   ++S N +   +  S+F+F   L+ L L++N+   
Sbjct: 26  LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-- 81

Query: 204 SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLD 263
                   S                     L  L LS N  +      +  ++  L  L 
Sbjct: 82  -----VKISCHPT---------------VNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121

Query: 264 LSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW 323
           LS   L    S    +   + ++L +      E  + +         L     + +  ++
Sbjct: 122 LSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

Query: 324 IWRVSVVGLHCLNLSHNFLVGFQ----------------APYSIPALRFIDLISNQLRGN 367
           I  VSV  +  L LS+   V                      S   L  I+   N     
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 368 IHQLPNNPI-YIDFSNNNFTSSIPADTVNGTL--------------------PDTFPRNC 406
           +  + +  + Y   SN      +     + +                        +    
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            +   +   +  +       +K      L+  NN  +D            ++ L +++  
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQM-- 357

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLS 525
             N    +                 +KSL  L++S N+++           K L SL++S
Sbjct: 358 --NQLKELSKIAEMTTQ--------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 526 MNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
            N L+  I   L     +  L+L  N+++
Sbjct: 408 SNILTDTIFRCLPPR--IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 80/470 (17%), Positives = 145/470 (30%), Gaps = 58/470 (12%)

Query: 112 LANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAV 171
           + ++S L  L +S                 L  LD S N+    +  I     +NL    
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK----LVKISCHPTVNLKHLD 96

Query: 172 LSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLR 230
           LS N+ D       F     L+ L L+      S        + +    +          
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 231 TQKLTPLLLSSNNLN------------GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNY 278
            + L      S ++              +V+    L L N+  +                
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 279 SFSPMLELLNLASCK-----LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLH 333
             +P L  L L + +        I  L   + + Y  +S  ++  ++    +  S   L 
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 334 CLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPI--------YIDFSNNNF 385
            L++       F  P S     F ++       +  ++ +           ++DFSNN  
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 386 TSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQ--GTVPKSIAKCKMLEVLNLGNNQFS 443
           T          T+ +       L+TL L  N+ +    + +   + K L+ L++  N  S
Sbjct: 337 TD---------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 444 DKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHN 503
                       ++  L++      NI T   F              L   +  L+L  N
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSS----NILTDTIFR------------CLPPRIKVLDLHSN 431

Query: 504 ALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
            +  SIP     L+ L+ L+++ N L          L  L  + L  N  
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 56/307 (18%), Positives = 107/307 (34%), Gaps = 33/307 (10%)

Query: 68  IGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISS--KLANISSLTYLNLSD 125
           I   L     S  +   A L +   L +L L              +L   +++ Y ++S+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 126 AGFAGQIPVQISRMA-----RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS 180
               GQ+  +    +      L       + F     S  +E   N+     + +     
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 181 IPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLS 240
                 +      L  +NN    ++                           +L  L+L 
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCG-------------------HLTELETLILQ 356

Query: 241 SNNLNG-TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN 299
            N L   +   +    + +L +LD+S NS++ DE   + S++  L  LN++S  L +   
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL--VGFQAPYSIPALRFI 357
                +++ L L  N+I   IP  + ++    L  LN++ N L  V       + +L+ I
Sbjct: 417 RCLPPRIKVLDLHSNKIKS-IPKQVVKLE--ALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 358 DLISNQL 364
            L +N  
Sbjct: 474 WLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS 549
            L +    LN+S N ++    S   +L +L  L +S N +     S       L YL+LS
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 550 YNQL 553
           +N+L
Sbjct: 78  HNKL 81

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 9e-15
 Identities = 53/309 (17%), Positives = 98/309 (31%), Gaps = 29/309 (9%)

Query: 47  WRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGT 106
           W  + +C   + V+    G  +   L        +     +     L+ L +        
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 107 QISSKLA--NISSLTYLNLSDAGFAGQIPVQISRMA--RLVALDFSFNQFSG---SISSI 159
            +   L    IS L  L L +    G  P  +       L  L+     ++     ++ +
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 160 RWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ 219
           +      L    ++           +  FP L  L L++N   G     S          
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-- 201

Query: 220 IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKIL--SLGNLAKLDLSYNSLAVDESSRN 277
                         L  L L +  +     +   L  +   L  LDLS+NSL     + +
Sbjct: 202 -------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 278 YSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 337
             +   L  LNL+   L+++P     ++L  L LS N++ R          +  +  L+L
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPD----ELPQVGNLSL 303

Query: 338 SHNFLVGFQ 346
             N  +  +
Sbjct: 304 KGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 62/334 (18%), Positives = 94/334 (28%), Gaps = 80/334 (23%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK 293
           L  LL   +      Q   I+   +L +L +    +              L +L +    
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR------ILFGALRVLGI---- 94

Query: 294 LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA------ 347
                     S LQ L L   +++   P  +   +   L+ LNL +       A      
Sbjct: 95  ----------SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 348 PYSIPALRFIDLISNQLRG---NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR 404
            +  P L+ + +             ++      +D S+N          ++   P  FP 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--LISALCPLKFPT 202

Query: 405 NCLLQTLDLNGNR---PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
              LQ L L       P G      A    L+ L+L +N   D                 
Sbjct: 203 ---LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD----------------- 242

Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLES 521
                                            L  LNLS   L   +P   G   +L  
Sbjct: 243 ---------------------AAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKLSV 278

Query: 522 LDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           LDLS N L R  PS    L  +  L+L  N    
Sbjct: 279 LDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 87/456 (19%), Positives = 160/456 (35%), Gaps = 40/456 (8%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
                L+LS    +      IS ++ L  L  S N+   S+    +    +L    +S N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 176 SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR---FSNASS----SALDTQIKRVYSCLG 228
            L  +I         L+ L L+ N F   +P    F N +          + +++   L 
Sbjct: 111 RL-QNISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLP 165

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 288
           +    L+ +LL   + +      + L + N   L L ++  ++     N S +  L  L 
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA-LGHLQ 224

Query: 289 LASCKLREIPNLKNQSQLQYLY--LSENQISREIPNWIWRVSVVGLHCLN---LSHNFLV 343
           L++ KL +    +  + L  L    +   ++ +     W+ SV          + +  + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 344 GFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSN--NNFTS-SIPADTVN--GTL 398
                  I    F    +      I  + N           + F   +I   +++    +
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 399 PDTFPRNCL-LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITI 457
               P +      L+   N    +V +  +  K L+ L L  N   + F  +       +
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA--LMTKNM 402

Query: 458 KGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK 517
             L+  L   LN   S  +                +S+  LNLS N LTGS+        
Sbjct: 403 SSLET-LDVSLNSLNSHAYDRT---------CAWAESILVLNLSSNMLTGSVFRCL--PP 450

Query: 518 RLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           +++ LDL  N +  +IP  +  L  L  LN++ NQL
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 84/464 (18%), Positives = 144/464 (31%), Gaps = 60/464 (12%)

Query: 116 SSLTYLNLSDAGFAGQIPVQI-SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSD 174
           S L  L LS       +   +      L  LD S N+    + +I    + +L    LS 
Sbjct: 76  SELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR----LQNISCCPMASLRHLDLSF 130

Query: 175 NSLDGSIPRSMFEFPMLQQLQ---LANNQ-----FGGSIPRFSNASSSALDTQIKRVYSC 226
           N  D  +P    EF  L +L    L+  +              +     L +   +    
Sbjct: 131 NDFD-VLPVCK-EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 227 LGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSP---- 282
             L+    T L L  +  N    +   +S+  L  L LS   L  +   R  +F      
Sbjct: 189 ESLQIPNTTVLHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 283 -------MLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCL 335
                   L+ +        ++        ++YL +    I+  I    +  S   L  L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 336 NLSHNFLVGFQAPYS-----IPALRFIDLISNQLRGNIHQLPNNPI---YIDFSNNNFTS 387
            + H     F             +    L  +         P +P    +++F+ N FT 
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFP 447
                    ++         LQTL L  N  +    K     K +  L   +   +    
Sbjct: 368 ---------SVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLN-SLN 416

Query: 448 CSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG 507
              YD          +          ++ S+N   G +     L   +  L+L +N +  
Sbjct: 417 SHAYD----------RTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM- 463

Query: 508 SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           SIP    +L+ L+ L+++ N L          L  L Y+ L  N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 54/339 (15%), Positives = 110/339 (32%), Gaps = 36/339 (10%)

Query: 230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELL 287
              +L  L LS N +  ++     L   +L  LD+S+N L      +N S  PM  L  L
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL------QNISCCPMASLRHL 126

Query: 288 NLASCKLREIPNLK---NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVG 344
           +L+      +P  K   N ++L +L LS  +  + +         +    L+L    +  
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHI-- 183

Query: 345 FQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSN------NNFTSSIPADTVNGTL 398
                   +L+  +     L  + + L +  + +  +       +N   +        T 
Sbjct: 184 --KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 399 PDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC---KMLEVLNLGNNQFSDKFPCSLYDAPI 455
                R   L  + L            + +    + +E LN+ N   +++    +     
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER----IDREEF 297

Query: 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN 515
           T     +K   I ++          F         +   +    LS +           +
Sbjct: 298 TYSETALKSLMIEHV------KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 516 LKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
                 L+ + N  + ++    ++L  L  L L  N L+
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 52/286 (18%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 66  HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISS--KLANISSLTYLNL 123
            +  + L+ E+    +   + L     L ++ L              +      + YLN+
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 124 SDAGFAGQIPVQI-----SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLD 178
            +     +I  +      + +  L+        F  S  ++ +     +   +LS +   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL-YSVFAEMNIKMLSISDT- 341

Query: 179 GSIPRSMFEFP-MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPL 237
             I       P     L    N F  S+ +                 S L    ++L  L
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ---------------GCSTL----KRLQTL 382

Query: 238 LLSSNNL-NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE 296
           +L  N L N         ++ +L  LD+S NSL      R  +++  + +LNL+S  L  
Sbjct: 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

Query: 297 IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL 342
                   +++ L L  N+I   IP  +  +    L  LN++ N L
Sbjct: 443 SVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQ--ALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 56/392 (14%), Positives = 130/392 (33%), Gaps = 47/392 (11%)

Query: 93  LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGF-AGQIPVQISRMARLVALDFSFNQ 151
           LR L+L+   F+   +  +  N++ LT+L LS A F    +          + LD     
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 152 FSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR---SMFEFPMLQQLQLANNQF------- 201
             G  +         ++  V   NSL         +      L  ++L +          
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 202 -----GGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKI--- 253
                G ++   +            +++     R   +  L + +  +   +  ++    
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR--PVEYLNIYNLTITERIDREEFTYS 300

Query: 254 -LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL-LNLASCKLREIPNLKNQSQLQYLYL 311
             +L +L    +        + +    F+ M    L+++      +    + S   +L  
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 312 SENQISREIPNWIWRVSVVGLHCLNLSHNFL----VGFQAPYSIPALRFIDLISNQLRGN 367
           ++N  +  +       ++  L  L L  N L           ++ +L  +D+  N L  +
Sbjct: 361 TQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 368 IH----QLPNNPIYIDFSNNNFTSSIPADTVNG------------TLPDTFPRNCLLQTL 411
            +        + + ++ S+N  T S+                   ++P        LQ L
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQEL 478

Query: 412 DLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQF 442
           ++  N+ + +VP  +  +   L+ + L +N +
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 38/263 (14%), Positives = 85/263 (32%), Gaps = 28/263 (10%)

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 291
             +T L      +     ++ +  L NL  L+L  N +              +  L L+ 
Sbjct: 41  DGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQI---TDLAPLKNLTKITELELSG 94

Query: 292 CKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI 351
             L+ +  +     ++ L L+  QI+    +      +  L  L L  N +        +
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQIT----DVTPLAGLSNLQVLYLDLNQITNISPLAGL 150

Query: 352 PALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409
             L+++ + + Q+  ++  L N      +   +N  +   P                 L 
Sbjct: 151 TNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKISDISP-----------LASLPNLI 198

Query: 410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD--APITIKGLDIKLQKI 467
            + L  N  Q +    +A    L ++ L N   +++      +   P  +KG        
Sbjct: 199 EVHLKNN--QISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 468 LNIFTSIDFSTNNFKGPILEDVG 490
             I  +  +++ N    +   + 
Sbjct: 257 ATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 52/301 (17%), Positives = 103/301 (34%), Gaps = 66/301 (21%)

Query: 255 SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 314
           +L N  K+    +++    +  +      +  L+     +  I  ++  + L  L L +N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL---DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 315 QISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRG--NIHQLP 372
           QI+ ++       ++  +  L LS N L    A   + +++ +DL S Q+     +  L 
Sbjct: 74  QIT-DLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML 432
           N                                  LQ L L+ N  Q T    +A    L
Sbjct: 130 N----------------------------------LQVLYLDLN--QITNISPLAGLTNL 153

Query: 433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL 492
           + L++GN Q SD            +  L   L K+    T++    N      +  +  L
Sbjct: 154 QYLSIGNAQVSD------------LTPLA-NLSKL----TTLKADDNKISD--ISPLASL 194

Query: 493 KSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552
            +L  ++L +N ++    S   N   L  + L+   ++        +L   + +      
Sbjct: 195 PNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

Query: 553 L 553
            
Sbjct: 253 P 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 22/246 (8%)

Query: 162 EHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS----SALD 217
             L N +      +++  ++ ++  +   +  L         +I      ++       D
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72

Query: 218 TQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN 277
            QI  +     L   K+T L LS N L     +  I  L ++  LDL+   +        
Sbjct: 73  NQITDLAPLKNL--TKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 278 YSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 337
                 L++L L   ++  I  L   + LQYL +   Q+S   P      ++  L  L  
Sbjct: 128 L---SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL----ANLSKLTTLKA 180

Query: 338 SHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVN 395
             N +       S+P L  + L +NQ+  ++  L N      +  +N   T+       N
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 396 GTLPDT 401
             +P+ 
Sbjct: 240 LVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 39/266 (14%), Positives = 87/266 (32%), Gaps = 65/266 (24%)

Query: 291 SCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS 350
              +  I      +    +   ++ ++  +     +  + G+  L+     +   +    
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQY 61

Query: 351 IPALRFIDLISNQLR--GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL 408
           +  L  ++L  NQ+     +  L                                    +
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTK----------------------------------I 87

Query: 409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL 468
             L+L+GN        +IA  + ++ L+L + Q +D  P +              L  + 
Sbjct: 88  TELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDVTPLA-------------GLSNL- 131

Query: 469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNN 528
                +    N      +  +  L +L  L++ +  ++  + +   NL +L +L    N 
Sbjct: 132 ---QVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNK 184

Query: 529 LSRAIPSQLASLYFLSYLNLSYNQLE 554
           +S   P  LASL  L  ++L  NQ+ 
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 40/252 (15%), Positives = 87/252 (34%), Gaps = 41/252 (16%)

Query: 66  HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD 125
           + I +     +++  +        L  + +L+       G      +  +++L  L L D
Sbjct: 20  NAIKIAAGKSNVTDTVT----QADLDGITTLSA---FGTGVTTIEGVQYLNNLIGLELKD 72

Query: 126 AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSM 185
                  P  +  + ++  L+ S N    ++S+I    L ++    L+   +    P + 
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTPLA- 126

Query: 186 FEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN 245
                LQ L L  NQ   +I   +  +                     L  L + +  ++
Sbjct: 127 -GLSNLQVLYLDLNQI-TNISPLAGLT--------------------NLQYLSIGNAQVS 164

Query: 246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQ 305
               L  + +L  L  L    N +         +  P L  ++L + ++ ++  L N S 
Sbjct: 165 ---DLTPLANLSKLTTLKADDNKI---SDISPLASLPNLIEVHLKNNQISDVSPLANTSN 218

Query: 306 LQYLYLSENQIS 317
           L  + L+   I+
Sbjct: 219 LFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 37/202 (18%), Positives = 77/202 (38%), Gaps = 13/202 (6%)

Query: 81  IENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMA 140
           ++N + +  L  +++L+L   +       + LA +S+L  L L         P  ++ + 
Sbjct: 97  LKNVSAIAGLQSIKTLDL---TSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLT 151

Query: 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200
            L  L     Q S  ++ +   +L  L      DN +   I   +   P L ++ L NNQ
Sbjct: 152 NLQYLSIGNAQVS-DLTPL--ANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQ 206

Query: 201 FGGSIPRFSNASS-SALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNL 259
               +   +N S+   +    + + +        L    +        +    I   G  
Sbjct: 207 IS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTY 265

Query: 260 AKLDLSYNSLAVDESSRNYSFS 281
           A  +L++N L    ++ +Y+F+
Sbjct: 266 ASPNLTWN-LTSFINNVSYTFN 286

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 78/477 (16%), Positives = 142/477 (29%), Gaps = 106/477 (22%)

Query: 116 SSLTYLNLS-----DAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170
             +  L++      DA +A  +P+    + +   +          ++  R + +     +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPL----LQQCQVVRLDDCG----LTEARCKDI----SS 50

Query: 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLR 230
            L  N             P L +L L +N+ G              D  +  V   L   
Sbjct: 51  ALRVN-------------PALAELNLRSNELG--------------DVGVHCVLQGLQTP 83

Query: 231 TQKLTPLLLSSNNLN--GTVQLDKIL-SLGNLAKLDLSYNSLAVDE----SSRNYSFSPM 283
           + K+  L L +  L   G   L   L +L  L +L LS N L                  
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 284 LELLNLASCKLREI------PNLKNQSQLQYLYLSENQISREIPNWIW---RVSVVGLHC 334
           LE L L  C L           L+ +   + L +S N I+      +    + S   L  
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTV 394
           L L    +           +         LR            +   +N          +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVAS----KASLR-----------ELALGSNKLGDV----GM 244

Query: 395 NGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAK----CKMLEVLNLGNNQFSDKFPCSL 450
               P     +  L+TL +            + +     + L+ L+L  N+  D+     
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE----- 299

Query: 451 YDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL----KSLYGLNLSHNALT 506
                  + L   L +      S+   + +F          +    + L  L +S+N L 
Sbjct: 300 -----GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 507 GSIPSSFG-----NLKRLESLDLSMNNLS----RAIPSQLASLYFLSYLNLSYNQLE 554
            +               L  L L+  ++S     ++ + L + + L  L+LS N L 
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 67/399 (16%), Positives = 116/399 (29%), Gaps = 73/399 (18%)

Query: 84  AAILFSLHYLRSLNLARTSFNGT---QISSKLANIS-SLTYLNLSDAGF----AGQIPVQ 135
           ++ L     L  LNL            +   L   S  +  L+L +        G +   
Sbjct: 49  SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108

Query: 136 ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAV----LSDNSLDGSIPRSMFEF--- 188
           +  +  L  L  S N    +   +  E LL+  C +    L   SL  +    +      
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 189 -PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN-- 245
            P  ++L ++NN                 +  ++ +   L     +L  L L S  +   
Sbjct: 169 KPDFKELTVSNNDIN--------------EAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

Query: 246 GTVQLDKIL-SLGNLAKLDLSYNSL----AVDESSRNYSFSPMLELLNLASCKLREI--- 297
               L  I+ S  +L +L L  N L      +        S  L  L +  C +      
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 298 ---PNLKNQSQLQYLYLSENQISREIPNWIWRV---SVVGLHCLNLSHNFL--VGFQAPY 349
                L+ +  L+ L L+ N++  E    +          L  L +              
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH-- 332

Query: 350 SIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ 409
                      S+ L  N   L    + +  SNN    +     +   L        +L+
Sbjct: 333 ----------FSSVLAQNRF-L----LELQISNNRLEDAG-VRELCQGLGQP---GSVLR 373

Query: 410 TLDLNGNR--PQGTVP--KSIAKCKMLEVLNLGNNQFSD 444
            L L               ++     L  L+L NN   D
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 61/300 (20%), Positives = 83/300 (27%), Gaps = 99/300 (33%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 313
              ++ L  N ++        SF     L +L L S  L  I        + L+ L LS+
Sbjct: 33  ASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPN 373
           N   R +    +     GL                     L  + L    L         
Sbjct: 90  NAQLRSVDPATFH----GL-------------------GRLHTLHLDRCGL--------- 117

Query: 374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE 433
                          +         P  F     LQ L L  N  Q     +      L 
Sbjct: 118 -------------QELG--------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK 493
            L L  N+                              +S+      F+G        L 
Sbjct: 157 HLFLHGNRI-----------------------------SSV--PERAFRG--------LH 177

Query: 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           SL  L L  N +    P +F +L RL +L L  NNLS      LA L  L YL L+ N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 47/230 (20%), Positives = 73/230 (31%), Gaps = 31/230 (13%)

Query: 116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN 175
           ++   + L     +            L  L    N  +  I +  +  L  L    LSDN
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 176 SLDGSIPRSMFEF-PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL 234
           +   S+  + F     L  L L        +                      GL    L
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG------PGLFR----------GLA--AL 131

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASC 292
             L L  N L   +  D    LGNL  L L  N +    S    +F  +  L+ L L   
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSLDRLLLHQN 187

Query: 293 KLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 340
           ++  +     ++  +L  LYL  N +S  +P       +  L  L L+ N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALA-PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 55/263 (20%), Positives = 78/263 (29%), Gaps = 71/263 (26%)

Query: 293 KLREIP-NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI 351
            L+ +P  +   +  Q ++L  N+IS              L  L L  N L        I
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLA------RI 71

Query: 352 PALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTL 411
            A  F  L    L             +D S+N    S+         P TF     L TL
Sbjct: 72  DAAAFTGL--ALLE-----------QLDLSDNAQLRSVD--------PATFHGLGRLHTL 110

Query: 412 DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF 471
            L+    Q   P        L+ L L +N                       LQ +    
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA----------------------LQAL---- 144

Query: 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR 531
                  + F+         L +L  L L  N ++     +F  L  L+ L L  N ++ 
Sbjct: 145 -----PDDTFRD--------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 532 AIPSQLASLYFLSYLNLSYNQLE 554
             P     L  L  L L  N L 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 36/188 (19%)

Query: 372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKM 431
               +          +          +P   P     Q + L+GNR       S   C+ 
Sbjct: 10  NEPKVTTSCPQQGLQA----------VPVGIPAA--SQRIFLHGNRISHVPAASFRACRN 57

Query: 432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL----NIFTSIDFSTNNFKGPILE 487
           L +L L +N  +     +              L+++         S+D +T  F G    
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLA--------LLEQLDLSDNAQLRSVDPAT--FHG---- 103

Query: 488 DVGLLKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL 546
               L  L+ L+L    L   +    F  L  L+ L L  N L          L  L++L
Sbjct: 104 ----LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 547 NLSYNQLE 554
            L  N++ 
Sbjct: 159 FLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 17/209 (8%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSK-LANISSLTYLNLSDAGF 128
           + L    IS     +    +   L  L L        +I +     ++ L  L+LSD   
Sbjct: 37  IFLHGNRISHVPAAS--FRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 129 AGQIPVQI-SRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE 187
              +       + RL  L          +    +  L  L    L DN+L  ++P   F 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 188 F-PMLQQLQLANNQFGGSIPRFSNASSSALDT------QIKRVYSCLGLRTQKLTPLLLS 240
               L  L L  N+   S+P  +     +LD       ++  V+        +L  L L 
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 241 SNNLNGTVQLDKILSLGNLAKLDLSYNSL 269
           +NNL+  +  + +  L  L  L L+ N  
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 63/278 (22%)

Query: 284 LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH-N 340
              L     KLR I          L+ + +S+N +   I   ++  ++  LH + +   N
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIEKAN 90

Query: 341 FLVGFQ--APYSIPALRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTV 394
            L+     A  ++P L+++ + +  ++     +        + +D  +N    +I  ++ 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK-VLLDIQDNINIHTIERNSF 149

Query: 395 NGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAP 454
            G L            L LN N  Q     +    ++ E+    NN              
Sbjct: 150 VG-LSF------ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN------------- 189

Query: 455 ITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS-SF 513
                    L+++           + F G              L++S   +  S+PS   
Sbjct: 190 ---------LEEL---------PNDVFHG--------ASGPVILDISRTRIH-SLPSYGL 222

Query: 514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
            NLK+L +      NL +     L  L  L   +L+Y 
Sbjct: 223 ENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 42/218 (19%), Positives = 70/218 (32%), Gaps = 38/218 (17%)

Query: 348 PYSIPA-LRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF 402
           P  +P     +  +  +LR    G      +    I+ S N+    I AD  +  LP   
Sbjct: 25  PSDLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSN-LPK-- 80

Query: 403 PRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
                L  + +        +          L+ L + N       P       +    LD
Sbjct: 81  -----LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLD 134

Query: 462 I----KLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK 517
           I     +  I           N+F       VGL      L L+ N +   I +S  N  
Sbjct: 135 IQDNINIHTI---------ERNSF-------VGLSFESVILWLNKNGIQ-EIHNSAFNGT 177

Query: 518 RLESLDLSMNNLSRAIPSQ-LASLYFLSYLNLSYNQLE 554
           +L+ L+LS NN    +P+           L++S  ++ 
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 37/232 (15%)

Query: 89  SLHYLRSLNLARTSFNGTQISSKL-----ANISSLTYLNLSDAGFAGQIPVQI-SRMARL 142
               L  + +   S N   +   +     +N+  L  + +  A     I  +    +  L
Sbjct: 52  GFGDLEKIEI---SQN--DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106

Query: 143 VALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE--FPMLQQLQLANNQ 200
             L  S       +  +   H L  V   + DN    +I R+ F         L L  N 
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 201 FGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLA 260
               I       +SA +             TQ     L  +NNL   +  D         
Sbjct: 166 IQ-EIH------NSAFNG------------TQLDELNLSDNNNLE-ELPNDVFHGASGPV 205

Query: 261 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS 312
            LD+S   +    S  +Y    + +L   ++  L+++P L+    L    L+
Sbjct: 206 ILDISRTRI---HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 41/274 (14%)

Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
           P+          +++I +    ++     L +  ++  +        +  +  +  +++ 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSD 57

Query: 342 LVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLP 399
           +   Q    +P +  + L  N+L  +I  L N     ++    N          +     
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSSLKDLKK--- 113

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKG 459
                   L++L L  N    +    +     LE L LGNN+ +D            I  
Sbjct: 114 --------LKSLSLEHN--GISDINGLVHLPQLESLYLGNNKITD------------ITV 151

Query: 460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL 519
           L  +L K+     ++    N      +  +  L  L  L LS N ++  +  +   LK L
Sbjct: 152 LS-RLTKL----DTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNL 202

Query: 520 ESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           + L+L          +  ++L   + +  +   L
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 36/228 (15%)

Query: 162 EHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIK 221
           +     +   L   S+  ++ ++  E   + Q+   N+    S+                
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQGIQYL---------- 67

Query: 222 RVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS 281
                       +T L L+ N L     +  + +L NL  L L  N +    S ++    
Sbjct: 68  ----------PNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDL--- 111

Query: 282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
             L+ L+L    + +I  L +  QL+ LYL  N+I+ +I        +  L  L+L  N 
Sbjct: 112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITV---LSRLTKLDTLSLEDNQ 167

Query: 342 LVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTS 387
           +        +  L+ + L  N +  ++  L        ++  +    +
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLN 214

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 37/242 (15%)

Query: 81  IENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMA 140
           I+      +       NL          +     ++S+  +  +++         I  + 
Sbjct: 14  IKQIFSDDAFAETIKDNL---KKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLP 68

Query: 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200
            +  L  + N+ +  I  +   +L NL    L +N +   +  S+ +   L+ L L +N 
Sbjct: 69  NVTKLFLNGNKLT-DIKPL--ANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHN- 122

Query: 201 FGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLA 260
                              I  +   + L   +L  L L +N +     +  +  L  L 
Sbjct: 123 ------------------GISDINGLVHL--PQLESLYLGNNKIT---DITVLSRLTKLD 159

Query: 261 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREI 320
            L L  N +         +    L+ L L+   + ++  L     L  L L   +   + 
Sbjct: 160 TLSLEDNQI---SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216

Query: 321 PN 322
            N
Sbjct: 217 IN 218

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 24/168 (14%)

Query: 386 TSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDK 445
            + + A   N  +PD+  +  L   L  +      T   + A+   L  + L N   +D 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSS-----TANITEAQMNSLTYITLANINVTD- 58

Query: 446 FPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNAL 505
                      + G++     I      +  +  +        +  L +L  L +    +
Sbjct: 59  -----------LTGIE-YAHNI----KDLTINNIHATN--YNPISGLSNLERLRIMGKDV 100

Query: 506 TGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           T     +   L  L  LD+S +    +I +++ +L  ++ ++LSYN  
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 20/146 (13%)

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           ++ L +N      T    I+    LE L +     +     +L             L  +
Sbjct: 68  IKDLTINNI--HATNYNPISGLSNLERLRIMGKDVTSDKIPNL-----------SGLTSL 114

Query: 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
               T +D S +     IL  +  L  +  ++LS+N     I      L  L+SL++  +
Sbjct: 115 ----TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

Query: 528 NLSRAIPSQLASLYFLSYLNLSYNQL 553
            +       +     L+ L      +
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 33/187 (17%), Positives = 68/187 (36%), Gaps = 31/187 (16%)

Query: 133 PVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQ 192
            +  ++M  L  +  +    +  ++ I  E+  N+    +++       P S      L+
Sbjct: 37  NITEAQMNSLTYITLANINVT-DLTGI--EYAHNIKDLTINNIHATNYNPIS--GLSNLE 91

Query: 193 QLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK 252
           +L++            ++     L           GL    LT L +S +  + +  L K
Sbjct: 92  RLRIMGKDV-------TSDKIPNLS----------GL--TSLTLLDISHSAHDDS-ILTK 131

Query: 253 ILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPNLKNQSQLQYLY 310
           I +L  +  +DLSYN    D          +  L+ LN+    + +   +++  +L  LY
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY 187

Query: 311 LSENQIS 317
                I 
Sbjct: 188 AFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 36/189 (19%)

Query: 256 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ 315
           + +L  + L+  ++          ++  ++ L + +        +   S L+ L +    
Sbjct: 43  MNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD 99

Query: 316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP 375
           ++ +    +    +  L  L++SH+                     + +   I+ LP   
Sbjct: 100 VTSDKIPNL--SGLTSLTLLDISHS------------------AHDDSILTKINTLPKV- 138

Query: 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVL 435
             ID S N   + I       TLP+       L++L++  +       + I     L  L
Sbjct: 139 NSIDLSYNGAITDIMP---LKTLPE-------LKSLNIQFD--GVHDYRGIEDFPKLNQL 186

Query: 436 NLGNNQFSD 444
              +     
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
           +N  T I  +  N     L  +    ++  L +++   T    +    L  LE L +   
Sbjct: 43  MNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 528 NLSRAIPSQLASLYFLSYLNLSYNQLE 554
           +++      L+ L  L+ L++S++  +
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 18/123 (14%)

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           L+ L + G         +++    L +L++ ++   D     +                 
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT--------------- 134

Query: 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
           L    SID S N      +  +  L  L  LN+  + +         +  +L  L     
Sbjct: 135 LPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQ 191

Query: 528 NLS 530
            + 
Sbjct: 192 TIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 81  IENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMA 140
             N   +  L  L  L +        +I + L+ ++SLT L++S +     I  +I+ + 
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200
           ++ ++D S+N     I  +  + L  L    +  + +         +FP L QL   +  
Sbjct: 137 KVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQT 192

Query: 201 FGG 203
            GG
Sbjct: 193 IGG 195

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 6e-11
 Identities = 46/299 (15%), Positives = 98/299 (32%), Gaps = 16/299 (5%)

Query: 259 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 318
           L + +       V  S      S           ++  +  + +++ L   + + +  +R
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 319 EIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYI 378
               W+  +    L+     H F V +    S      +         +           
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD-EQLFRC 354

Query: 379 DFSNNNFTSSIPADTVNGTLPDTFPRN---CLLQTLDLNGNRPQGTVPKSIAKCKMLEVL 435
           + S    T           L +  P N    L   L +    P     +++     L+ +
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 436 NLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSL 495
           +            S +    ++  ++    ++L++      +  +    +L  +  L  +
Sbjct: 415 D-PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL------AHKDLT--VLCHLEQLLLV 465

Query: 496 YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
             L+LSHN L  ++P +   L+ LE L  S N L   +   +A+L  L  L L  N+L+
Sbjct: 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 291
           + L PLL     L     L  +  +      DL    L   E+S        + +L+LA 
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL--LENSVLKMEYADVRVLHLAH 450

Query: 292 CKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI 351
             L  + +L+    + +L LS N++ R +P  +  +    L  L  S N L       ++
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRL-RALPPALAALR--CLEVLQASDNALENVDGVANL 507

Query: 352 PALRFIDLISNQLRG--NIHQLPNNP--IYIDFSNNNFTS 387
           P L+ + L +N+L+    I  L + P  + ++   N+   
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 41/291 (14%), Positives = 85/291 (29%), Gaps = 33/291 (11%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317
           +L    L+                   E + L         +     QL    LS  + +
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362

Query: 318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPI 376
             + + +         C  L            + I  +R +D +  +      Q  +   
Sbjct: 363 -VLQSEL-------ESCKELQELEPENKWCLLTIILLMRALDPLLYEK--ETLQYFSTLK 412

Query: 377 YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN 436
            +D     +   + +  +             ++ L L       TV   + +  ++  L+
Sbjct: 413 AVDPMRAAYLDDLRSKFLLEN-SVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLD 469

Query: 437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY 496
           L +N+               ++ L   L  +  +   +  S N  +   ++ V  L  L 
Sbjct: 470 LSHNR---------------LRALPPALAALRCL-EVLQASDNALE--NVDGVANLPRLQ 511

Query: 497 GLNLSHNALTG-SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL 546
            L L +N L   +      +  RL  L+L  N+L +    Q      L  +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 32/214 (14%)

Query: 81  IENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA-----GQIPVQ 135
           +E       L  +  +          +     + + ++  +  +           +  V 
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 136 ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQ 195
               A +  L  +    +  +  +  E LL +    LS N L  ++P ++     L+ LQ
Sbjct: 437 KMEYADVRVLHLAHKDLT-VLCHL--EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492

Query: 196 LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILS 255
            ++N                    ++ V     L   +L  LLL +N L  +  +  ++S
Sbjct: 493 ASDNA-------------------LENVDGVANL--PRLQELLLCNNRLQQSAAIQPLVS 531

Query: 256 LGNLAKLDLSYNSLAVDESSRNY--SFSPMLELL 287
              L  L+L  NSL  +E  +       P +  +
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 31/189 (16%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 315
             A LDLS+N+L+   +    +    L  L L+   L  I +        L+YL LS N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP 375
           +   +  +++   +  L  L L +N +V       +    F D+   QL+          
Sbjct: 100 L-HTLDEFLFS-DLQALEVLLLYNNHIV------VVDRNAFEDM--AQLQ---------- 139

Query: 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML--E 433
             +  S N  +   P + +             L  LDL+ N+ +      + K       
Sbjct: 140 -KLYLSQNQIS-RFPVELIKDGNKLPK-----LMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 434 VLNLGNNQF 442
            L L NN  
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 35/179 (19%)

Query: 172 LSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPR--FSNASSSALDTQIKRVYSCLG 228
           LS N+L              L  L L++N     I    F    +               
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN--------------- 89

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLEL 286
                L  L LSSN+L+ T+       L  L  L L  N +         +F     L+ 
Sbjct: 90  -----LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQK 140

Query: 287 LNLASCKLREIP-----NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 340
           L L+  ++   P     +     +L  L LS N++ +     + ++     + L L +N
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 45/225 (20%), Positives = 65/225 (28%), Gaps = 65/225 (28%)

Query: 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQ 363
           S    L LS N +SR    W     +  LH L LSHN L        I +  F+ +    
Sbjct: 39  SYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLN------FISSEAFVPV--PN 89

Query: 364 LRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVP 423
           LR           Y+D S+N+   ++            F     L+ L L  N       
Sbjct: 90  LR-----------YLDLSSNHLH-TLD--------EFLFSDLQALEVLLLYNNHIVVVDR 129

Query: 424 KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKG 483
            +      L+ L L  NQ                              +           
Sbjct: 130 NAFEDMAQLQKLYLSQNQ-----------------------------ISRFPVEL----- 155

Query: 484 PILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNN 528
             ++D   L  L  L+LS N L     +    L       L ++N
Sbjct: 156 --IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 44/160 (27%)

Query: 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPI 455
            +P + P       LDL+ N       +    +   L  L L +N               
Sbjct: 32  NVPQSLPSY--TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-------------- 75

Query: 456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS-SFG 514
                   L  I         S+  F          + +L  L+LS N L  ++    F 
Sbjct: 76  --------LNFI---------SSEAFVP--------VPNLRYLDLSSNHLH-TLDEFLFS 109

Query: 515 NLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           +L+ LE L L  N++     +    +  L  L LS NQ+ 
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 54/189 (28%)

Query: 371 LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK 430
           LP+    +D S+NN +  + A+           R   L +L L+ N       ++     
Sbjct: 37  LPSYTALLDLSHNNLSR-LRAEWT-------PTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVG 490
            L  L+L +N                                ++D     F         
Sbjct: 89  NLRYLDLSSNHL-----------------------------HTLDEFL--FSD------- 110

Query: 491 LLKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSRAIP----SQLASLYFLSY 545
            L++L  L L +N +   +   +F ++ +L+ L LS N +SR  P         L  L  
Sbjct: 111 -LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLML 167

Query: 546 LNLSYNQLE 554
           L+LS N+L+
Sbjct: 168 LDLSSNKLK 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 70/444 (15%), Positives = 141/444 (31%), Gaps = 113/444 (25%)

Query: 8   FAINIAFVS-GQCQSD------QQTLLLQLKSSLT--FDPSSSVK------------LMQ 46
               I +++   C S        Q LL Q+  + T   D SS++K            L++
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 47  WRQSTDC-------CDWSGVDCDEAGHVIGLDLS--TESISGGIENAAILFSLHYLR-SL 96
            +   +C        +    +          +LS      +   +    L +      SL
Sbjct: 240 SKPYENCLLVLLNVQNAKAWN--------AFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 97  NLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMA-RLVALDFSFNQFSGS 155
           +    +    ++ S L       YL+         +P ++     R +++       + S
Sbjct: 292 DHHSMTLTPDEVKSLLLK-----YLDCR----PQDLPREVLTTNPRRLSI------IAES 336

Query: 156 ISS--IRWEHLLNLVCAVLSD------NSLDGSIPRSMFE----FP-----MLQQLQ-LA 197
           I      W++  ++ C  L+       N L+ +  R MF+    FP         L  + 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 198 NNQFGGSIPRFSN--ASSSALDTQIKR-VYSCLGLRTQKLTPLLLSSNNLNGTV----QL 250
            +     +    N     S ++ Q K    S   +   +L   L +   L+ ++     +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNI 455

Query: 251 DKILSLGNLAK--LD------LSYNSLAVDESSRNYSFSPMLELLNLA--SCKLREIPNL 300
            K     +L    LD      + ++ L   E     +   M+  L+      K+R     
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTA 513

Query: 301 KNQSQ-----LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALR 355
            N S      LQ L   +  I    P +   V+ +         +FL   +   ++   +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--------DFL--PKIEENLICSK 563

Query: 356 FIDLISNQLRGNIHQLPNNPIYID 379
           + DL+   L        +  I+ +
Sbjct: 564 YTDLLRIAL-----MAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 69/526 (13%), Positives = 139/526 (26%), Gaps = 186/526 (35%)

Query: 162 EHLLNLVCAVLSDNSLD------GSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSA 215
           + + ++  ++LS   +D       ++  ++  F  L   Q                    
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-------------EEMVQKF 82

Query: 216 LDTQIKRVYSCL--GLRTQKLTPLLLSS------NNLNGTVQL---------DKILSLGN 258
           ++  ++  Y  L   ++T++  P +++       + L    Q+            L L  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 259 -LAKLDLSYN------------SLAVDESSRNYSFSPMLEL----LNLASCKLREIPNLK 301
            L +L  + N             +A+ +   +Y     ++     LNL +C       L+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLE 200

Query: 302 NQSQLQYL----YLSENQISREIP---NW-----------------------IWRVSVV- 330
              +L Y     + S +  S  I    +                        +       
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 331 --GLHC-----------------LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQL 371
              L C                    +H  L       +   ++   L+   L      L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDL 318

Query: 372 PN-----NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI 426
           P      NP  +        S I     +G    T+          +N ++    +   I
Sbjct: 319 PREVLTTNPRRL--------SIIAESIRDG--LATWDN-----WKHVNCDK----LTTII 359

Query: 427 AKCKMLEVLNLGNNQ--FSDK--FPCSLYDAPITIKGLDI--------KLQKILNIFTSI 474
                L VL     +  F     FP     A I    L +         +  ++N     
Sbjct: 360 ESS--LNVLEPAEYRKMFDRLSVFP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413

Query: 475 DFSTNNFKGPILEDV-GLLKSLYGLNLS-----------HNALTGSIPSSFGNLKRLESL 522
                     + +       S+  + L            H     SI   +   K  +S 
Sbjct: 414 -------YSLVEKQPKESTISIPSIYLELKVKLENEYALHR----SIVDHYNIPKTFDSD 462

Query: 523 DLSMNN------------LSRAIPSQLASLYFLSYLNLSYNQLEGR 556
           DL                L      +  +L+ + +L+  +  LE +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQK 506

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 37/214 (17%)

Query: 352 PALRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL 407
           P+ + + LI   LR         LPN    I  S +     + + +    L         
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYN-LSK------- 81

Query: 408 LQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
           +  +++   R    +      +  +L+ L + N      FP             D+    
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP-------------DLTKVY 127

Query: 467 ILNIFTSIDFSTNNFKGPILEDV--GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDL 524
             +IF  ++ + N +   I  +   GL      L L +N  T S+     N  +L+++ L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186

Query: 525 SMNNLSRAIP----SQLASLYFLSYLNLSYNQLE 554
           + N     I       + S    S L++S   + 
Sbjct: 187 NKNKYLTVIDKDAFGGVYSG--PSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 30/208 (14%)

Query: 142 LVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQ 200
              L         +I S  + +L N+    +S +     +    F     +  +++ N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 201 FGGSIPR--FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGN 258
               I                              L  L + +  L     L K+ S   
Sbjct: 92  NLTYIDPDALKELP--------------------LLKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 259 LAKLDLSYNSLAVDESSRNYSFSPM---LELLNLASCKLREIP-NLKNQSQLQYLYLSEN 314
              L+++ N      S    +F  +      L L +     +     N ++L  +YL++N
Sbjct: 132 FFILEITDNPY--MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189

Query: 315 QISREIPNWIWRVSVVGLHCLNLSHNFL 342
           +    I    +     G   L++S   +
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 59/271 (21%)

Query: 287 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
             +    ++ IP+L      Q L L E  +   IP+  +  ++  +  + +S +  +   
Sbjct: 16  FRVTCKDIQRIPSL--PPSTQTLKLIETHLR-TIPSHAFS-NLPNISRIYVSIDVTLQ-- 69

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
               + +  F +L  +++            +I+  N    + I         PD      
Sbjct: 70  ---QLESHSFYNL--SKVT-----------HIEIRNTRNLTYID--------PDALKELP 105

Query: 407 LLQTLDLNGNR----PQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI 462
           LL+ L +        P  T    +    +  +L + +N +    P          +GL  
Sbjct: 106 LLKFLGIFNTGLKMFPDLT---KVYSTDIFFILEITDNPYMTSIP------VNAFQGLCN 156

Query: 463 KLQKIL---NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS-SFGNLKR 518
           +   +    N FTS+      F G  L+          + L+ N     I   +FG +  
Sbjct: 157 ETLTLKLYNNGFTSV--QGYAFNGTKLDA---------VYLNKNKYLTVIDKDAFGGVYS 205

Query: 519 -LESLDLSMNNLSRAIPSQLASLYFLSYLNL 548
               LD+S  +++      L  L  L   N 
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 490 GLLKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSRAIPSQL-ASLYFLSYLN 547
            L  S   L L    L  +IPS +F NL  +  + +S++   + + S    +L  ++++ 
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 548 LSYNQ 552
           +   +
Sbjct: 87  IRNTR 91

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 56/199 (28%), Positives = 80/199 (40%), Gaps = 39/199 (19%)

Query: 373 NNPIYIDFSNNNFTS---SIPADTVNGTL---------PDTFPRNCLLQTLDLNGNRPQG 420
           NN   +D S+   T+   +IPADT    L            F R   L+ L LN N+ Q 
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ- 74

Query: 421 TVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI---KLQKI-LNIFTSID 475
           T+P  I  + K LE L + +N+     P  ++D  + +  L +   +L+ +   +F S  
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-- 131

Query: 476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSRAIP 534
                           L  L  L+L +N L  S+P   F  L  L+ L L  N L R   
Sbjct: 132 ----------------LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 535 SQLASLYFLSYLNLSYNQL 553
                L  L  L L  NQL
Sbjct: 175 GAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 47/199 (23%), Positives = 72/199 (36%), Gaps = 38/199 (19%)

Query: 234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLAS 291
              L L SN L+ ++       L  L  L L+ N L    +     F  +  LE L +  
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAG---IFKELKNLETLWVTD 94

Query: 292 CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY 349
            KL+ +P         L  L L  NQ+   +P  ++  S+  L  L+L +N L       
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD-SLTKLTYLSLGYNELQ------ 146

Query: 350 SIPA--------LRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGT 397
           S+P         L+ + L +NQL+    G   +L      +   NN     +P       
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLK-RVPE------ 198

Query: 398 LPDTFPRNCLLQTLDLNGN 416
               F     L+ L L  N
Sbjct: 199 --GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 492 LKSLYGLNLSHNALTGSIPSS-FGNLKRLESLDLSMNNLSRAIPSQL-ASLYFLSYLNLS 549
           L  L  L L+ N L  ++P+  F  LK LE+L ++ N L  A+P  +   L  L+ L L 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 550 YNQLE 554
            NQL+
Sbjct: 118 RNQLK 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 48/229 (20%), Positives = 77/229 (33%), Gaps = 59/229 (25%)

Query: 306 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA--PYSIPALRFIDLISNQ 363
            + L L  N++S  +P+  +   +  L  L L+ N L    A     +  L  + +  N+
Sbjct: 39  TKKLDLQSNKLSS-LPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 364 LR---GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG 420
           L+     +     N   +    N   S +P        P  F     L  L L  N  Q 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKS-LP--------PRVFDSLTKLTYLSLGYNELQ- 146

Query: 421 TVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI-LNIFTSIDFST 478
           ++PK +  K   L+ L L NNQ                      L+++    F       
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQ----------------------LKRVPEGAFDK----- 179

Query: 479 NNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
                        L  L  L L +N L      +F +L++L+ L L  N
Sbjct: 180 -------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 48/217 (22%), Positives = 72/217 (33%), Gaps = 36/217 (16%)

Query: 348 PYSIPA-LRFIDLISNQLR----GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF 402
           P ++P   + +DL  N LR     +    P     +D S     + I            +
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQT-IE--------DGAY 72

Query: 403 PRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI 462
                L TL L GN  Q     + +    L+ L       +            T+K L++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 463 KLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS-SFGNLKRLE- 520
               I +      FS              L +L  L+LS N +  SI       L ++  
Sbjct: 132 AHNLIQSFKLPEYFSN-------------LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPL 177

Query: 521 ---SLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
              SLDLS+N +   I         L  L L  NQL+
Sbjct: 178 LNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 49/249 (19%)

Query: 284 LELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNF 341
            + L+L+   LR + +    +  +LQ L LS  +I   I +  ++ S+  L  L L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQ-SLSHLSTLILTGNP 87

Query: 342 L--VGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399
           +  +   A   + +L+ +  +   L                      +S+    +   L 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNL----------------------ASLENFPIGH-LK 124

Query: 400 DTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK 458
                   L+ L++  N  Q   +P+  +    LE L+L +N+      C+       + 
Sbjct: 125 T-------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMP 176

Query: 459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKR 518
            L++ L   LN    I      FK            L  L L  N L       F  L  
Sbjct: 177 LLNLSLDLSLNPMNFIQ--PGAFKEI---------RLKELALDTNQLKSVPDGIFDRLTS 225

Query: 519 LESLDLSMN 527
           L+ + L  N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 44/182 (24%)

Query: 381 SNNNFTS---SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNL 437
              NF     ++P  T               + LDL+ N  +     S      L+VL+L
Sbjct: 15  MELNFYKIPDNLPFST---------------KNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 438 GNNQFSDKFPCSLYDAPITIKGLDI---KLQKI-LNIFTSIDFSTNNFKGPILEDVGLLK 493
              +         Y +   +  L +    +Q + L  F+                   L 
Sbjct: 60  SRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSG------------------LS 100

Query: 494 SLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSR-AIPSQLASLYFLSYLNLSYN 551
           SL  L      L  S+ +   G+LK L+ L+++ N +    +P   ++L  L +L+LS N
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 552 QL 553
           ++
Sbjct: 160 KI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 24/211 (11%)

Query: 145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGG 203
           LD SFN     + S  +     L    LS   +  +I    ++    L  L L  N    
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 204 SIPRFSNASSSAL------DTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILS-L 256
           S+   + +  S+L      +T +  + +      + L  L ++ N +  + +L +  S L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNL 148

Query: 257 GNLAKLDLSYNSLAVDESSRNYSFSPMLEL------LNLASCKLREIP-NLKNQSQLQYL 309
            NL  LDLS N +   +S        + ++      L+L+   +  I      + +L+ L
Sbjct: 149 TNLEHLDLSSNKI---QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205

Query: 310 YLSENQISREIPNWIWRVSVVGLHCLNLSHN 340
            L  NQ+   +P+ I+   +  L  + L  N
Sbjct: 206 ALDTNQLKS-VPDGIFD-RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 41/222 (18%)

Query: 106 TQISSK-LANISSLTYLNLSDAGFAGQIPVQI-SRMARLVALDFSFNQFSGSISSIRWEH 163
             + S    +   L  L+LS       I       ++ L  L  + N    S++   +  
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSG 98

Query: 164 LLNLVCAVLSDNSLDGSIPRSMFE-FPMLQQLQLANNQFGGSIPR---FSNASSSALDTQ 219
           L +L   V  + +L  S+          L++L +A+N    S      FSN ++      
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTN------ 150

Query: 220 IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNL----AKLDLSYNSLAVDESS 275
                         L  L LSSN +  ++    +  L  +      LDLS N +   +  
Sbjct: 151 --------------LEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 276 RNYSFSPM-LELLNLASCKLREIPN--LKNQSQLQYLYLSEN 314
              +F  + L+ L L + +L+ +P+      + LQ ++L  N
Sbjct: 196 ---AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 51/349 (14%), Positives = 98/349 (28%), Gaps = 90/349 (25%)

Query: 234 LTPLLLSSNNLN--GTVQLDKIL-SLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELL 287
           +    L  + +       +  +L    ++ ++ LS N++  + +   S N +    LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 288 NLASCKLREIPN------------LKNQSQLQYLYLSENQISREIPNWIWRV--SVVGLH 333
             +      + +            L    +L  + LS+N         +         L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 334 CLNLSHN---------------FLVGFQAPYSIPALRFIDLISNQLRGNI------HQLP 372
            L L +N                L   +   + P LR I    N+L  N           
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQ 184

Query: 373 NNP--IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNR--PQGTVP--KSI 426
           ++     +    N        + +   L +       L+ LDL  N     G+     ++
Sbjct: 185 SHRLLHTVKMVQNGIRP----EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 427 AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL 486
                L  L L +   S +   ++ DA            K+ N                 
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDA----------FSKLEN----------------- 273

Query: 487 EDVGLLKSLYGLNLSHNALTGSIPSSFG-----NLKRLESLDLSMNNLS 530
                   L  L L +N +      +        +  L  L+L+ N  S
Sbjct: 274 ------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 60/320 (18%), Positives = 112/320 (35%), Gaps = 51/320 (15%)

Query: 88  FSLHYLRSLNLARTSFNGTQ-ISSKLANISSLTYLNLSDAGF----AGQIPVQISRMARL 142
           FS+    SL L   +    + + + L    S+  + LS        A  +   I+    L
Sbjct: 4   FSIEGK-SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 143 VALDFSFNQFSGSISSIRWEHLLNLVCAV----------LSDNSLDGSIPRSMFEF---- 188
              +FS   F+G +     E L  L+ A+          LSDN+   +    + +F    
Sbjct: 63  EIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 189 PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNL--NG 246
             L+ L L NN  G   P+     + AL    +   +        L  ++   N L    
Sbjct: 122 TPLEHLYLHNNGLG---PQAGAKIARAL---QELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 247 TVQLDKIL-SLGNLAKLDLSYNSL----AVDESSRNYSFSPMLELLNLASCKLREI---- 297
             +  K   S   L  + +  N +             ++   L++L+L       +    
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 298 --PNLKNQSQLQYLYLSENQIS----REIPNWIWRVSVVGLHCLNLSHNFL--VGFQA-- 347
               LK+   L+ L L++  +S      + +   ++  +GL  L L +N +     +   
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 348 ---PYSIPALRFIDLISNQL 364
                 +P L F++L  N+ 
Sbjct: 296 TVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 51/314 (16%), Positives = 87/314 (27%), Gaps = 68/314 (21%)

Query: 66  HVIGLDLSTESIS--GGIENAAILFSLHYLRSLNLARTSFN---------GTQISSKLAN 114
            V  + LS  +I        +  + S   L     +                 +   L  
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 115 ISSLTYLNLSDAGF----AGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA 170
              L  + LSD  F       +   +S+   L  L    N                 +  
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG--------PQAGAKIAR 144

Query: 171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLR 230
            L + +++     +    P L+ +    N+         N S                 +
Sbjct: 145 ALQELAVNKKAKNA----PPLRSIICGRNRLE-------NGSMKEW---------AKTFQ 184

Query: 231 T-QKLTPLLLSSNNLNGTVQLDKILSLG-----NLAKLDLSYNSLAVDES---SRNYSFS 281
           + + L  + +  N +     ++ +L  G      L  LDL  N+     S   +      
Sbjct: 185 SHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 282 PMLELLNLASCKLRE---------IPNLKNQSQLQYLYLSENQISRE----IPNWIWRVS 328
           P L  L L  C L              L+N   LQ L L  N+I  +    +   I    
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVI-DEK 301

Query: 329 VVGLHCLNLSHNFL 342
           +  L  L L+ N  
Sbjct: 302 MPDLLFLELNGNRF 315

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 49/247 (19%), Positives = 77/247 (31%), Gaps = 75/247 (30%)

Query: 306 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLR 365
              L+LSEN +       +  +    L  LNL    L   Q   ++P L  +DL  NQL+
Sbjct: 33  TTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 366 GNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKS 425
                                          +LP        L  LD++ NR       +
Sbjct: 91  -------------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 426 IAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI 485
           +     L+ L L  N+       +L                   + T             
Sbjct: 120 LRGLGELQELYLKGNELK-----TLPP----------------GLLTP------------ 146

Query: 486 LEDVGLLKSLYGLNLSHNALTGSIPSS-FGNLKRLESLDLSMNNLSRAIPSQLASLYFLS 544
                    L  L+L++N LT  +P+     L+ L++L L  N+L   IP      + L 
Sbjct: 147 ------TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 545 YLNLSYN 551
           +  L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 37/176 (21%), Positives = 51/176 (28%), Gaps = 60/176 (34%)

Query: 381 SNNNFTS---SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNL 437
              N T+    +P DT                 L L+ N        ++     L  LNL
Sbjct: 18  DKRNLTALPPDLPKDT---------------TILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 438 GNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG 497
              + +                        L +  +                  L  L  
Sbjct: 63  DRAELTK-----------------------LQVDGT------------------LPVLGT 81

Query: 498 LNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           L+LSHN L  S+P     L  L  LD+S N L+      L  L  L  L L  N+L
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 27/145 (18%)

Query: 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLA 290
           +LT L L    L    +L    +L  L  LDLS+N L     S        P L +L+++
Sbjct: 56  RLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQL----QSLPLLGQTLPALTVLDVS 108

Query: 291 SCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP 348
             +L  +P   L+   +LQ LYL  N++   +P  +       L  L+L++N L      
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT-PTPKLEKLSLANNNLT----- 161

Query: 349 YSIPA--------LRFIDLISNQLR 365
             +PA        L  + L  N L 
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 39/198 (19%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317
           +   L LS N L     +    +   L  LNL   +L ++        L  L LS NQ+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL- 89

Query: 318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA--------LRFIDLISNQLRGNIH 369
           + +P     +    L  L++S N L       S+P         L+ + L  N+L+    
Sbjct: 90  QSLPLLGQTLP--ALTVLDVSFNRLT------SLPLGALRGLGELQELYLKGNELK---- 137

Query: 370 QLPN-------NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTV 422
            LP            +  +NNN T  +PA  +NG L +       L TL L  N    T+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG-LEN-------LDTLLLQENSLY-TI 187

Query: 423 PKSIAKCKMLEVLNLGNN 440
           PK      +L    L  N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
              L  LNL    LT  +    G L  L +LDLS N L +++P    +L  L+ L++S+N
Sbjct: 54  YTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFN 110

Query: 552 QLE 554
           +L 
Sbjct: 111 RLT 113

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 33/263 (12%), Positives = 75/263 (28%), Gaps = 64/263 (24%)

Query: 293 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIP 352
            + ++      +      L +  ++  +        + G+   N  ++ +          
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQSLAGMQFFT 63

Query: 353 ALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQT 410
            L+ + L  NQ+  ++  L +      +  + N   +     +              L  
Sbjct: 64  NLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC------------LSR 110

Query: 411 LDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNI 470
           L L+ N  +     S+   K LE+L++ NN+                             
Sbjct: 111 LFLDNN--ELRDTDSLIHLKNLEILSIRNNKLKS-------------------------- 142

Query: 471 FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS 530
                          +  +G L  L  L+L  N +T +       LK++  +DL+     
Sbjct: 143 ---------------IVMLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCV 185

Query: 531 RAIPSQLASLYFLSYLNLSYNQL 553
                    LY  + +     + 
Sbjct: 186 NEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 45/249 (18%)

Query: 136 ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQ 195
              +A  V  +      +  + S   + L  +      ++++       M  F  L++L 
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVSQ--KELSGVQNFNGDNSNI--QSLAGMQFFTNLKELH 69

Query: 196 LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILS 255
           L++NQ    I   S                       KL  L ++ N L         + 
Sbjct: 70  LSHNQ----ISDLSPLKD-----------------LTKLEELSVNRNRLKNL----NGIP 104

Query: 256 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ 315
              L++L L  N L     + +      LE+L++ + KL+ I  L   S+L+ L L  N+
Sbjct: 105 SACLSRLFLDNNEL---RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE 161

Query: 316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP 375
           I+           +  ++ ++L+    V      + P     +L       +      +P
Sbjct: 162 IT-NTGGLT---RLKKVNWIDLTGQKCV------NEPVKYQPELYITNTVKDPDGRWISP 211

Query: 376 IYIDFSNNN 384
            YI  SN  
Sbjct: 212 YYI--SNGG 218

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 41/239 (17%), Positives = 73/239 (30%), Gaps = 60/239 (25%)

Query: 81  IENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMA 140
           I        L      NL                +S +   N  ++     +   +    
Sbjct: 9   INQVFPDPGLANAVKQNL---GKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFT 63

Query: 141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ 200
            L  L  S NQ    IS +    L +L                       L++L +  N 
Sbjct: 64  NLKELHLSHNQ----ISDL--SPLKDLTK---------------------LEELSVNRN- 95

Query: 201 FGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLA 260
                             ++K +    G+ +  L+ L L +N L      D ++ L NL 
Sbjct: 96  ------------------RLKNL---NGIPSACLSRLFLDNNELR---DTDSLIHLKNLE 131

Query: 261 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 319
            L +  N L   +S     F   LE+L+L   ++     L    ++ ++ L+  +   E
Sbjct: 132 ILSIRNNKL---KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)

Query: 408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI 467
           +Q  + + +         +     L+ L+L +NQ SD            +  L   L K+
Sbjct: 43  VQNFNGDNS--NIQSLAGMQFFTNLKELHLSHNQISD------------LSPLK-DLTKL 87

Query: 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
                 +  + N  K   L  +     L  L L +N L      S  +LK LE L +  N
Sbjct: 88  ----EELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRD--TDSLIHLKNLEILSIRNN 138

Query: 528 NLSRAIPSQLASLYFLSYLNLSYNQLE 554
            L       L  L  L  L+L  N++ 
Sbjct: 139 KLKSI--VMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 426 IAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI 485
                     NLG    +D            +     +L  +     + +   +N +   
Sbjct: 15  DPGLANAVKQNLGKQSVTD------------LVSQK-ELSGV----QNFNGDNSNIQ--S 55

Query: 486 LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY 545
           L  +    +L  L+LSHN ++  + S   +L +LE L ++ N L        A    LS 
Sbjct: 56  LAGMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSR 110

Query: 546 LNLSYNQLE 554
           L L  N+L 
Sbjct: 111 LFLDNNELR 119

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 32/161 (19%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 315
             A+L L+ N   V E++  +   P L  +N ++ K+ +I     +  S +  + L+ N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP 375
           +   + + +++  +  L  L L  N +        +    FI L  + +R          
Sbjct: 93  L-ENVQHKMFK-GLESLKTLMLRSNRIT------CVGNDSFIGL--SSVR---------- 132

Query: 376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN 416
             +   +N  T ++         P  F     L TL+L  N
Sbjct: 133 -LLSLYDNQIT-TVA--------PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           L  L  +N S+N +T     +F     +  + L+ N L          L  L  L L  N
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115

Query: 552 QLE 554
           ++ 
Sbjct: 116 RIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 39/169 (23%), Positives = 57/169 (33%), Gaps = 33/169 (19%)

Query: 387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDK 445
             IP  T                 L LN N         I  K   L  +N  NN+ +  
Sbjct: 28  EHIPQYT---------------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-D 71

Query: 446 FPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNAL 505
                ++    +  +   L    N   ++      FKG        L+SL  L L  N +
Sbjct: 72  IEEGAFEGASGVNEIL--LTS--NRLENVQHKM--FKG--------LESLKTLMLRSNRI 117

Query: 506 TGSIPS-SFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           T  + + SF  L  +  L L  N ++   P    +L+ LS LNL  N  
Sbjct: 118 T-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL--LNLASC 292
             L L++N             L  L K++ S N +   E     +F     +  + L S 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVNEILLTSN 91

Query: 293 KLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFL--VGFQAP 348
           +L  + +   K    L+ L L  N+I+  + N  +   +  +  L+L  N +  V   A 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFI-GLSSVRLLSLYDNQITTVAPGAF 149

Query: 349 YSIPALRFIDLISNQL 364
            ++ +L  ++L++N  
Sbjct: 150 DTLHSLSTLNLLANPF 165

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 428 KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE 487
                  L+L   +               I+ L   L +    F +IDFS N  +   L+
Sbjct: 17  NAVRDRELDLRGYKIPV------------IENLGATLDQ----FDAIDFSDNEIR--KLD 58

Query: 488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR-AIPSQLASLYFLSYL 546
              LL+ L  L +++N +          L  L  L L+ N+L        LASL  L+YL
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 547 NLSYN 551
            +  N
Sbjct: 119 CILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 239 LSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 298
           L++  +    Q           +LDL    + V E+    +     + ++ +  ++R++ 
Sbjct: 4   LTAELIEQAAQYTN---AVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRKLD 58

Query: 299 NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSI---PALR 355
                 +L+ L ++ N+I R I   + + ++  L  L L++N LV       +    +L 
Sbjct: 59  GFPLLRRLKTLLVNNNRICR-IGEGLDQ-ALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 356 FIDLISN 362
           ++ ++ N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 40/163 (24%)

Query: 287 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
           + L +  + +     N  + + L L   +I   I               NL         
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPV-IE--------------NLGATL----- 41

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNP--IYIDFSNNNFTSSIPADTVNGTLPDTFPR 404
                     ID   N++R  +   P       +  +NN          +   L    P 
Sbjct: 42  -----DQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICR------IGEGLDQALPD 89

Query: 405 NCLLQTLDLNGNR--PQGTVPKSIAKCKMLEVLNLGNNQFSDK 445
              L  L L  N     G +   +A  K L  L +  N  ++K
Sbjct: 90  ---LTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 491 LLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSY 550
            L     ++ S N +   +   F  L+RL++L ++ N + R       +L  L+ L L+ 
Sbjct: 40  TLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 551 NQLE 554
           N L 
Sbjct: 98  NSLV 101

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 39/159 (24%)

Query: 404 RNCLLQTLDLNGNRPQGTVPKSIAKCKM--LEVLNLGNNQFSDKFPCSLYDAPITIKGLD 461
               L++L++       +V + I    +  LE L L        F   +           
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV--------- 241

Query: 462 IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN---LKR 518
              + + +                        +L  L +        +   F     L +
Sbjct: 242 --FRPLFS-------------------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 519 LESLDLSMNNLS----RAIPSQLASLYFLSYLNLSYNQL 553
           LE++D+S   L+    R +   +  +  L ++N+ YN L
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 28/151 (18%)

Query: 408 LQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLD--IKL 464
            + ++L+G  P    +  +++  K  + L L  N                I  L     L
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE------------KISSLSGMENL 72

Query: 465 QKILNIFTSIDFSTNNFKGPILEDV-GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLD 523
            +IL++        N  K   +E++  +  +L  L +S+N +  S+ S    L  L  L 
Sbjct: 73  -RILSL------GRNLIK--KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLY 121

Query: 524 LSMNNLSRAIP-SQLASLYFLSYLNLSYNQL 553
           +S N ++      +LA+L  L  L L+ N L
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 313
           +      K++L      +++     S     + L L++  + +I +L     L+ L L  
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLR--GNIHQL 371
           N I + I N         L  L +S+N +        +  LR + + +N++   G I +L
Sbjct: 80  NLIKK-IENLDAVAD--TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 372 PNNP--IYIDFSNN 383
                   +  + N
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL 516
           I+ +D  L  +      +  STNN +   +  +  +++L  L+L  N +   I +     
Sbjct: 37  IEKMDATLSTLKAC-KHLALSTNNIE--KISSLSGMENLRILSLGRNLIK-KIENLDAVA 92

Query: 517 KRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
             LE L +S N ++    S +  L  L  L +S N++ 
Sbjct: 93  DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 29/194 (14%), Positives = 65/194 (33%), Gaps = 42/194 (21%)

Query: 259 LAKLDLSYNSLAVDESSRNYSFSPMLEL-LNLASCKLREIP-NLKNQSQLQYLYLSENQI 316
           +AK     +++ + E  ++   +   ++ L+     + ++   L      ++L LS N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 317 SREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLR--GNIHQLPNN 374
            +          +  L  +                  LR + L  N ++   N+  + + 
Sbjct: 61  EK----------ISSLSGM----------------ENLRILSLGRNLIKKIENLDAVADT 94

Query: 375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVP-KSIAKCKMLE 433
              +  S N   S      ++G       +   L+ L ++ N+         +A    LE
Sbjct: 95  LEELWISYNQIAS------LSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 434 VLNLGNNQFSDKFP 447
            L L  N   + + 
Sbjct: 144 DLLLAGNPLYNDYK 157

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY 541
           +G +       + L  L+  +  LT SI ++   L +L+ L+LS N +S  +        
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 542 FLSYLNLSYNQLE 554
            L++LNLS N+++
Sbjct: 89  NLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 255 SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 314
           +  ++ +L L  +     +          LE L+  +  L  I NL   ++L+ L LS+N
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 315 QISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPY---SIPALRFIDLISN 362
           ++S  +           L  LNLS N +           +  L+ +DL + 
Sbjct: 75  RVSGGLEV--LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 228 GLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 287
                 +  L+L ++  N             L  L      L       N      L+ L
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKL 69

Query: 288 NLASCKLREIPNL--KNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 340
            L+  ++     +  +    L +L LS N+I  ++        +  L  L+L + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 485 ILEDVGLLKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSRAIPSQLASLYFL 543
            L  +   ++L  L + +      +       L  L +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 544 SYLNLSYNQL 553
           S LNLS+N L
Sbjct: 83  SRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 242 NNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPM--LELLNLASCKLREIPN 299
                   L  +    NL +L +        +         +  L  L +    LR +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 300 --LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLV 343
                  +L  L LS N +       +  +S   L  L LS N L 
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS---LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           L  L  L +  + L    P +F    RL  L+LS N L   +  +      L  L LS N
Sbjct: 55  LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGN 113

Query: 552 QL 553
            L
Sbjct: 114 PL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLA 290
            LT L + +      ++L  +  LG L  L +  + L         +F   P L  LNL+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLNLS 88

Query: 291 SCKLREIP-NLKNQSQLQYLYLSEN 314
              L  +         LQ L LS N
Sbjct: 89  FNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 1/54 (1%)

Query: 502 HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ-LASLYFLSYLNLSYNQLE 554
                          + L  L +      + +  + L  L  L  L +  + L 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 479 NNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA 538
            +  G I        +L  L+L +  L  S+ S+   L +L+ L+LS N +   +     
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 539 SLYFLSYLNLSYNQLE 554
            L  L++LNLS N+L+
Sbjct: 93  KLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 313
            +   + +L L        +     +    LE L+L +  L  + NL    +L+ L LSE
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGF---QAPYSIPALRFIDLISNQL 364
           N+I     + +    +  L  LNLS N L      +    +  L+ +DL + ++
Sbjct: 81  NRIFG-GLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL 491
           +  L L N + +D            I+GL  +   +      +           + ++  
Sbjct: 26  VRELVLDNCKSND----------GKIEGLTAEFVNL----EFLSLINVGLI--SVSNLPK 69

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR-AIPSQLASLYFLSYLNLSY 550
           L  L  L LS N + G +      L  L  L+LS N L   +    L  L  L  L+L  
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 551 NQL 553
            ++
Sbjct: 130 CEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 209 SNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS 268
            ++ SS +D + +            +  L+L +   N            NL  L L    
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG 60

Query: 269 LAVDESSRNYSFSPMLELLNLASCKLREIPNL--KNQSQLQYLYLSENQISREIPNWIWR 326
           L       N    P L+ L L+  ++    ++  +    L +L LS N++  +I      
Sbjct: 61  LISVS---NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPL 116

Query: 327 VSVVGLHCLNLSHN 340
             +  L  L+L + 
Sbjct: 117 KKLECLKSLDLFNC 130

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 45/342 (13%), Positives = 100/342 (29%), Gaps = 67/342 (19%)

Query: 191 LQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN--GTV 248
           +  L L+ N  G                    +   L      +T L LS N L+   + 
Sbjct: 53  VTSLNLSGNSLG--------------FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98

Query: 249 QLDKILSLGN--LAKLDLSYNSL----AVDESSRNYSFSPMLELLNLASCKLREI----- 297
           +L K L+     +  LDL +N      + +      +    +  LNL    L        
Sbjct: 99  ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158

Query: 298 -PNLKN-QSQLQYLYLSENQISREIPNWIWRV---SVVGLHCLNLSHNFL--VGFQAPYS 350
              L    + +  L L  N ++ +    + +        +  L+LS N L    +     
Sbjct: 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--- 215

Query: 351 IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQT 410
                    ++       + +    + ++   N        +     L         LQT
Sbjct: 216 ---------LAYIFSSIPNHV----VSLNLCLNCLHGPSLEN-----LKLLKDSLKHLQT 257

Query: 411 LDLNGNRPQGTVPK-------SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIK 463
           + L+ +  +    +       +    + + +++    +        + +    I+ L  K
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL---IRELSGK 314

Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNAL 505
                 +   + F+  +     +ED+ +   L     +   L
Sbjct: 315 ADVPSLLNQCLIFAQKH--QTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 45/298 (15%), Positives = 89/298 (29%), Gaps = 63/298 (21%)

Query: 300 LKNQSQLQYLYLSENQISREIPNWI---WRVSVVGLHCLNLSHNFL--VGFQA-----PY 349
                 +  L LS N +       +   +  +   +  LNLS N L              
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 350 SIPALRFIDLISNQLR-------GNIHQLPNNPI-YIDFSNNNFTSSIPADTVNGTLPDT 401
               +  ++L  N L                  I  +D   N+F+S   +        + 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNL 136

Query: 402 FPRNCLLQTLDLNGNRPQGTVPKSIAKC-----KMLEVLNLGNNQFSDKFPCSLYDAPIT 456
                 + +L+L GN         + +        +  LNL  N  + K    L      
Sbjct: 137 ---PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF--- 190

Query: 457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL----------KSLYGLNLSHNALT 506
           +  +   +       TS+D S N      L                  +  LNL  N L 
Sbjct: 191 LASIPASV-------TSLDLSANL-----LGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 507 GS----IPSSFGNLKRLESLDLSMNNLS-------RAIPSQLASLYFLSYLNLSYNQL 553
           G     +     +LK L+++ L  + +        +A+ +   ++  +  ++ +  ++
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 60/380 (15%), Positives = 116/380 (30%), Gaps = 103/380 (27%)

Query: 232 QKLTPLLLSSNNL--NGTVQLDKIL--SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 287
             +T L LS NNL    TV+L +    +  ++  L+LS NSL   ++S       +L   
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSD--ELVQILA-- 76

Query: 288 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV---SVVGLHCLNLSHNFLVG 344
                           + +  L LS N +S +  + + +        +  L+L  N    
Sbjct: 77  -------------AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 345 FQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR 404
             +                       +      ++   N+      +D +   L      
Sbjct: 124 KSSSE----------FKQAFSNLPASI----TSLNLRGNDLGIK-SSDELIQILAAI--- 165

Query: 405 NCLLQTLDLNGNRPQGTVPKSIAK-----CKMLEVLNLGNNQFSDKFPCSLYDAPITIKG 459
              + +L+L GN         +AK        +  L+L  N    K          +   
Sbjct: 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK----------SYAE 215

Query: 460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL----KSLYGLNLSHNALTG-------S 508
           L      I N   S++   N   GP LE++ LL    K L  + L ++ +         +
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 509 IPSSFGNLKRLESLDLSMNNLSRAIPSQLA-------------SLYF------------- 542
           + ++F N++++  +D +   +  +    ++             SL               
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNI 335

Query: 543 --------LSYLNLSYNQLE 554
                   L     +   L 
Sbjct: 336 EDLNIPDELRESIQTCKPLL 355

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 44/172 (25%), Positives = 58/172 (33%), Gaps = 40/172 (23%)

Query: 387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKF 446
           S IPADT               + LDL           +      L  LNL  NQ     
Sbjct: 31  SGIPADT---------------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TL 74

Query: 447 PCSLYDAPITIKGLDI---KLQKI-LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSH 502
              ++D    +  L +   +L  + L +F                    L  L  L L  
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDH------------------LTQLDKLYLGG 116

Query: 503 NALTGSIPSS-FGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           N L  S+PS  F  L +L+ L L+ N L          L  L  L+LS NQL
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 492 LKSLYGLNLSHNALTGSIPS-SFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSY 550
            K L  ++LS+N ++  +   +F  L+ L SL L  N ++    S    L+ L  L L+ 
Sbjct: 55  YKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113

Query: 551 NQLE 554
           N++ 
Sbjct: 114 NKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 32/166 (19%)

Query: 387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKF 446
           +++P                    + L  N  +   P + +  K L  ++L NNQ S + 
Sbjct: 28  TNLPETI---------------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-EL 71

Query: 447 PCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT 506
               +    ++  L   L    N  T +  S   F+G        L SL  L L+ N + 
Sbjct: 72  APDAFQGLRSLNSLV--LYG--NKITELPKSL--FEG--------LFSLQLLLLNANKIN 117

Query: 507 GSIPS-SFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
             +   +F +L  L  L L  N L        + L  +  ++L+ N
Sbjct: 118 -CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 498 LNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE 554
           + L  N +    P +F   K+L  +DLS N +S   P     L  L+ L L  N++ 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 287 LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVG 344
           + L    ++ IP        +L+ + LS NQI  E+    ++  +  L+ L L  N +  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQ-GLRSLNSLVLYGNKITE 94

Query: 345 FQA--PYSIPALRFIDLISNQL----RGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTL 398
                   + +L+ + L +N++          L N  + +    +N   +I         
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN--LNLLSLYDNKLQTIA-------- 144

Query: 399 PDTFPRNCLLQTLDLNGN 416
             TF     +QT+ L  N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNL 289
           +KL  + LS+N ++  +  D    L +L  L L  N +          F     L+LL L
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI---TELPKSLFEGLFSLQLLLL 111

Query: 290 ASCKLREIPN--LKNQSQLQYLYLSENQISR 318
            + K+  +     ++   L  L L +N++  
Sbjct: 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 63/479 (13%), Positives = 134/479 (27%), Gaps = 59/479 (12%)

Query: 112 LANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAV 171
                +L  L L     A    +        V       + S ++  ++    ++    +
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV--TPWVTEISNNLRQLK---SVHFRRMI 123

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLAN---------NQFGGSIPRFS--NASSSALDTQI 220
           +SD  LD  + ++      L+ L+L                   +        S+   + 
Sbjct: 124 VSDLDLD-RLAKARA--DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 221 KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLG----NLAKLDLSYNSLAVDESSR 276
            +    L      L  L          +    + ++     +L  + +    +       
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239

Query: 277 NYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVV--GLHC 334
               +  LE     S         K  + +    L    +S   PN +  +      +  
Sbjct: 240 --KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 335 LNLSHNFLV---GFQAPYSIPALRFIDLISN-------QLRGNIHQLPNNPIYIDFSNNN 384
           L+L +  L            P L  ++  +         L     QL    + I+   + 
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR--LRIERGADE 355

Query: 385 FTSSIPADTVNGTLPDTFPRNC-LLQTLDLNGNRPQGTVPKSIAK-CKMLEVLNLGNNQF 442
                    V+        + C  L+ + +  +       +SI    K L    L     
Sbjct: 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 443 SDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL------LKSLY 496
            ++         IT   LD  ++ +L     +       +   L D+GL        ++ 
Sbjct: 416 EER---------ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 497 GLNLSHNALT-GSIPSSFGNLKRLESLDLSMNNLS-RAIPSQLASLYFLSYLNLSYNQL 553
            + L +   +   +         L+ L++     S RAI + +  L  L YL +   + 
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 498 LNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           L L  N  T  +P    N K L  +DLS N +S       +++  L  L LSYN+L
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQL-ASLYFLSYLNLSY 550
            K L  ++LS+N ++     SF N+ +L +L LS N L R IP +    L  L  L+L  
Sbjct: 53  YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHG 111

Query: 551 NQL 553
           N +
Sbjct: 112 NDI 114

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 47/334 (14%), Positives = 87/334 (26%), Gaps = 81/334 (24%)

Query: 139 MARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLAN 198
           ++ L  L+ +  +    ++ ++   +     AVL                  L ++ LA+
Sbjct: 71  LSSLRQLNLAGVR----MTPVKCTVV----AAVLGSGRHA------------LDEVNLAS 110

Query: 199 NQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNL--NGTVQLDKILSL 256
            Q                   ++ +         +   L L  N+L       L  +L  
Sbjct: 111 CQLD--------------PAGLRTLLPVF----LRARKLGLQLNSLGPEACKDLRDLLLH 152

Query: 257 GN--LAKLDLSYNSL---AVDESSRNYSFSPMLELLNLASCKLREI------PNLKNQSQ 305
               +  L LS N L    V       + +  +  L+L    L +         L    Q
Sbjct: 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212

Query: 306 LQYLYLSENQISREIPNWIWRVSVV--GLHCLNLSHNFL--VGFQAPYSIPALRFIDLIS 361
           LQ L ++ N         + R +     L  L+L  N L   G Q             + 
Sbjct: 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV------------LR 260

Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSI------PADTVNGTL-PDTFPRNCLLQTLDLN 414
           +             + +  +     S               +       R+  L   DL 
Sbjct: 261 DLGGAA---EGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLE 317

Query: 415 GNRPQGTVPKSIAKC----KMLEVLNLGNNQFSD 444
            +R     P   A+       +  L         
Sbjct: 318 DSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 33/167 (19%)

Query: 405 NCLLQTLDLNGNRPQGTVPKSIAKC-KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIK 463
              L  ++L   +      +++         L L  N    +    L D    +     +
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL---LLHDQCQ 156

Query: 464 LQKILNIFTSIDFSTNNFKGPILEDVGLL---------KSLYGLNLSHNALT----GSIP 510
           +       T++  S N      L   G+           S+  L+L H  L       + 
Sbjct: 157 I-------TTLRLSNNP-----LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204

Query: 511 SSFGNLKRLESLDLSMNNLS----RAIPSQLASLYFLSYLNLSYNQL 553
           +     ++L+ L+++ N        A+         L  L+L +N+L
Sbjct: 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	558
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.67

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-65  Score=562.45  Aligned_cols=532  Identities=29%  Similarity=0.420  Sum_probs=352.3

Q ss_pred             HhhcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCCccceEeCCCCCEEEEEcCCCCcccc---ccC------
Q 048194           13 AFVSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG---IEN------   83 (558)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~---~~~------   83 (558)
                      +++++++.++|++||++||+++. ++.   .+++|..++|||.|.||.|+ .++|++|+|+++.+.|.   +++      
T Consensus         3 ~~~~~~~~~~~~~all~~k~~~~-~~~---~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~   77 (768)
T 3rgz_A            3 QASPSQSLYREIHQLISFKDVLP-DKN---LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLT   77 (768)
T ss_dssp             -----CCHHHHHHHHHHHHTTCS-CTT---SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred             cCccccCCHHHHHHHHHHHhhCC-Ccc---cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccC
Confidence            34455567889999999999997 343   68999988999999999998 69999999999988775   321      


Q ss_pred             ---------------cccccCCCCCCEEECCCCCCCCCccch--hhcCCCCCCEEeCcCCcCccCCChhc-cCCCCCcEE
Q 048194           84 ---------------AAILFSLHYLRSLNLARTSFNGTQISS--KLANISSLTYLNLSDAGFAGQIPVQI-SRMARLVAL  145 (558)
Q Consensus        84 ---------------~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L  145 (558)
                                     ...+..+++|++|+|++|.+.+. +|.  .++++++|++|++++|.+.+..|..+ .++++|++|
T Consensus        78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence                           01577888999999999988776 666  78888888888888887776666544 455555555


Q ss_pred             ecccccccccccch------------------------hhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccC
Q 048194          146 DFSFNQFSGSISSI------------------------RWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF  201 (558)
Q Consensus       146 ~L~~n~~~~~~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  201 (558)
                      ++++|.+++..+..                        .+..+++|++|++++|.+.+.+|. ++++++|++|++++|.+
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l  235 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL  235 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence            55555554322110                        113344444445555444443333 44444444444444444


Q ss_pred             CCCCCccc----------------------------------------------cccccchhhh----------hchhhh
Q 048194          202 GGSIPRFS----------------------------------------------NASSSALDTQ----------IKRVYS  225 (558)
Q Consensus       202 ~~~~~~~~----------------------------------------------~~~~~~l~~l----------i~~~~~  225 (558)
                      ++.+|..+                                              ...+..++.+          +|..+ 
T Consensus       236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-  314 (768)
T 3rgz_A          236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-  314 (768)
T ss_dssp             CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-
T ss_pred             CCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-
Confidence            43333222                                              1111122211          22223 


Q ss_pred             cccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCC-CCCEEecCCCCCC-CCCC-CCC
Q 048194          226 CLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSP-MLELLNLASCKLR-EIPN-LKN  302 (558)
Q Consensus       226 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~-~l~~-~~~  302 (558)
                         ..+++|++|++++|.+.|.+|...+..+++|++|++++|.+.+..+.. +..++ +|+.|++++|+++ .+|. +..
T Consensus       315 ---~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~  390 (768)
T 3rgz_A          315 ---GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQ  390 (768)
T ss_dssp             ---GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred             ---hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence               444555555555555555555444555555555555555555444433 22222 4444444444443 2222 222


Q ss_pred             --CCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCC---CCCC
Q 048194          303 --QSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQL---PNNP  375 (558)
Q Consensus       303 --~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~---~~~l  375 (558)
                        +++|++|++++|.+++.+|..+..+..  |++|++++|.+++..+.  ..+++|+.|++++|.+.+.+|..   ..+|
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTT--CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCC--CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence              455666666666666666666655554  66666666666654433  22566666666666666555543   3456


Q ss_pred             cEEEccCCcccccCCCC---------------CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCC
Q 048194          376 IYIDFSNNNFTSSIPAD---------------TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN  440 (558)
Q Consensus       376 ~~l~l~~n~~~~~~~~~---------------~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  440 (558)
                      ++|++++|.+++.+|..               .+.+.+|.+++.+++|++|++++|++.+.+|..+..+++|+.|++++|
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            66666666666554432               334677888888888999999999988888888888999999999999


Q ss_pred             cCcccCCccccCcee-------------------------------------------------------eccccchhhh
Q 048194          441 QFSDKFPCSLYDAPI-------------------------------------------------------TIKGLDIKLQ  465 (558)
Q Consensus       441 ~i~~~~p~~~~~~~~-------------------------------------------------------~~~~~~~~~~  465 (558)
                      +++|.+|..++....                                                       ...+.....+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            998888876643100                                                       0000001123


Q ss_pred             hhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCE
Q 048194          466 KILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSY  545 (558)
Q Consensus       466 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  545 (558)
                      ..+++|+.||+++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|++++.+|..+..+++|++
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCcCCcCeeecC
Q 048194          546 LNLSYNQLEGRFQ  558 (558)
Q Consensus       546 L~l~~n~l~~~~~  558 (558)
                      |++++|+++|+||
T Consensus       709 L~ls~N~l~g~iP  721 (768)
T 3rgz_A          709 IDLSNNNLSGPIP  721 (768)
T ss_dssp             EECCSSEEEEECC
T ss_pred             EECcCCcccccCC
Confidence            9999999999998

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-53  Score=456.13  Aligned_cols=471  Identities=19%  Similarity=0.245  Sum_probs=372.1

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCC-----CcccCCCCCCCCCCCc---cceEeCCCCCEEEEEcCCCCccccccCccccc
Q 048194           17 GQCQSDQQTLLLQLKSSLTFDPSS-----SVKLMQWRQSTDCCDW---SGVDCDEAGHVIGLDLSTESISGGIENAAILF   88 (558)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~w~~~~~~c~~---~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~   88 (558)
                      ++....|++||.++++++.++.|.     ++...+|+.+.++|.|   .||.|+..++|++|+|+++++.|.+|+  .++
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~--~l~  102 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD--AIG  102 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG--GGG
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh--HHh
Confidence            334557999999999998776553     1234589999999999   999998779999999999999999998  899


Q ss_pred             CCCCCCEEECCCCCCC------C------C--------------------ccchhhc-------------------CCCC
Q 048194           89 SLHYLRSLNLARTSFN------G------T--------------------QISSKLA-------------------NISS  117 (558)
Q Consensus        89 ~l~~L~~L~L~~n~~~------~------~--------------------~~~~~~~-------------------~l~~  117 (558)
                      .+++|++|+|++|.+.      +      .                    ..+..+.                   ....
T Consensus       103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  182 (636)
T 4eco_A          103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT  182 (636)
T ss_dssp             GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred             cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence            9999999999999651      1      0                    0111111                   1112


Q ss_pred             CCEEeCc--CCcCccCCChhccCCCCCcEEeccccccccc-----------------ccchhhc--CCCCccEEEccCCc
Q 048194          118 LTYLNLS--DAGFAGQIPVQISRMARLVALDFSFNQFSGS-----------------ISSIRWE--HLLNLVCAVLSDNS  176 (558)
Q Consensus       118 L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~~~~~~~--~l~~L~~L~L~~n~  176 (558)
                      ++.+.+.  +|.+++ +|..++++++|++|++++|.+++.                 +|. .++  ++++|++|++++|.
T Consensus       183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~  260 (636)
T 4eco_A          183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCP  260 (636)
T ss_dssp             CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCT
T ss_pred             hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCc
Confidence            3333332  578887 899999999999999999999974                 655 466  99999999999999


Q ss_pred             cCccCCccccCCCCCCEEeCcccc-CCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccCh-hhh
Q 048194          177 LDGSIPRSMFEFPMLQQLQLANNQ-FGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL-DKI  253 (558)
Q Consensus       177 l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~  253 (558)
                      +.+.+|..++++++|++|++++|+ +++ .+|..+..-.             ....+++|++|++++|.++ .+|. ..+
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l  326 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-------------DAPVGEKIQIIYIGYNNLK-TFPVETSL  326 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-------------HSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred             CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh-------------ccccCCCCCEEECCCCcCC-ccCchhhh
Confidence            999999999999999999999998 887 6776541000             0023489999999999998 7774 378


Q ss_pred             cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCC-CCEEecCCCcccccCChhHHhhcccc
Q 048194          254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSENQISREIPNWIWRVSVVG  331 (558)
Q Consensus       254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~  331 (558)
                      ..+++|++|++++|.+.+..+ . +..+++|+.|++++|+++.+|. +..+++ |++|++++|+++ .+|..+.....++
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             ccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            999999999999999997777 4 8889999999999999999988 888998 999999999997 7888776666456


Q ss_pred             ceEEEcCCccccccCCC--C-------CCCccCEEEcccccCcccCCC----CCCCCcEEEccCCcccccCCCCCccCCC
Q 048194          332 LHCLNLSHNFLVGFQAP--Y-------SIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGTL  398 (558)
Q Consensus       332 L~~L~ls~n~l~~~~~~--~-------~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~~~~~~~~  398 (558)
                      |++|++++|.+.+..+.  .       .+++|+.|++++|++++ +|.    .+++|++|++++|.++ .+|...+.+..
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~  481 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN  481 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence            99999999999876443  2       46789999999999984 443    2578999999999988 33332221111


Q ss_pred             CCCCCCCCCCCEEECcCCcCCccCCcccc--cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194          399 PDTFPRNCLLQTLDLNGNRPQGTVPKSIA--KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF  476 (558)
Q Consensus       399 p~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  476 (558)
                       ..+..+++|+.|++++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+..               +++|++|++
T Consensus       482 -~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~---------------l~~L~~L~L  543 (636)
T 4eco_A          482 -ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN---------------SSTLKGFGI  543 (636)
T ss_dssp             -EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG---------------CSSCCEEEC
T ss_pred             -ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc---------------CCCCCEEEC
Confidence             11223348999999999998 7787776  89999999999999987 7776654               889999999


Q ss_pred             ------CCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          477 ------STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       477 ------s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                            ++|++.+.+|..++.+++|++|++++|+++ .+|..+.  ++|+.|++++|++..
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence                  457788888899999999999999999994 7887765  799999999997764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-52  Score=454.47  Aligned_cols=487  Identities=19%  Similarity=0.224  Sum_probs=388.9

Q ss_pred             hcCCCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCC-----CCC--CCc------------cceEeCCCCCEEEEEcCCC
Q 048194           15 VSGQCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQS-----TDC--CDW------------SGVDCDEAGHVIGLDLSTE   75 (558)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~-----~~~--c~~------------~~~~c~~~~~v~~L~l~~~   75 (558)
                      .++++..+|++||++||+++.++        +|+.+     .++  |.|            .||.|+..++|++|+|+++
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~--------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~  333 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK--------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF  333 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG--------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred             cccccchHHHHHHHHHHHHcCCC--------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC
Confidence            34455678999999999999654        35332     355  999            9999987799999999999


Q ss_pred             CccccccCcccccCCCCCCEEEC-CCCCCCCCccchh----------------------------------------h--
Q 048194           76 SISGGIENAAILFSLHYLRSLNL-ARTSFNGTQISSK----------------------------------------L--  112 (558)
Q Consensus        76 ~~~~~~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~~----------------------------------------~--  112 (558)
                      ++.|.+|+  .++.+++|++|+| ++|.+.+. .+-.                                        +  
T Consensus       334 ~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~  410 (876)
T 4ecn_A          334 GAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR  410 (876)
T ss_dssp             CCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred             CCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence            99999998  8999999999999 77765443 1100                                        0  


Q ss_pred             ---------cCCCCCCEEeCcC--CcCccCCChhccCCCCCcEEecccccccc-----------------cccchhhc--
Q 048194          113 ---------ANISSLTYLNLSD--AGFAGQIPVQISRMARLVALDFSFNQFSG-----------------SISSIRWE--  162 (558)
Q Consensus       113 ---------~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~~~~~~~--  162 (558)
                               .....++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+|. .++  
T Consensus       411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~  488 (876)
T 4ecn_A          411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWS  488 (876)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGG
T ss_pred             CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhc
Confidence                     1122344444443  78886 89999999999999999999997                 2655 445  


Q ss_pred             CCCCccEEEccCCccCccCCccccCCCCCCEEeCcccc-CCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcc
Q 048194          163 HLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQ-FGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLS  240 (558)
Q Consensus       163 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~  240 (558)
                      ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..            +......+++|++|+++
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~------------L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR------------LADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH------------HHHCTTTTTTCCEEECC
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh------------hhhcccccCCccEEEee
Confidence            99999999999999999999999999999999999998 887 67765410            00011556799999999


Q ss_pred             cccCCcccCh-hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCC-CCEEecCCCccc
Q 048194          241 SNNLNGTVQL-DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSENQIS  317 (558)
Q Consensus       241 ~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~-L~~L~l~~n~l~  317 (558)
                      +|.++ .+|. ..+..+++|++|++++|.+. ..| . +..+++|+.|++++|+++.+|. +..+++ |+.|++++|.+.
T Consensus       557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence            99998 7774 37899999999999999998 555 3 8999999999999999999998 889998 999999999997


Q ss_pred             ccCChhHHhhccccceEEEcCCccccccCCC-------CCCCccCEEEcccccCcccCCC----CCCCCcEEEccCCccc
Q 048194          318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAP-------YSIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFT  386 (558)
Q Consensus       318 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~  386 (558)
                       .+|..+.....++|+.|++++|.+.+..+.       ..+++|+.|++++|.+. .+|.    .+++|+.|++++|.++
T Consensus       633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence             788877766666699999999999876543       12568999999999998 4443    3578999999999998


Q ss_pred             ccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccc--cCCCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194          387 SSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIA--KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL  464 (558)
Q Consensus       387 ~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~  464 (558)
                       .+|...+.+..+ .+.++++|+.|++++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..            
T Consensus       711 -~ip~~~~~~~~~-~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~------------  774 (876)
T 4ecn_A          711 -SIPENSLKPKDG-NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN------------  774 (876)
T ss_dssp             -CCCTTSSSCTTS-CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG------------
T ss_pred             -ccChHHhccccc-cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc------------
Confidence             444332222111 1234458999999999999 7888887  89999999999999987 6766644            


Q ss_pred             hhhhccceEEECCC------CcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhc
Q 048194          465 QKILNIFTSIDFST------NNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA  538 (558)
Q Consensus       465 ~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  538 (558)
                         +++|+.|+|++      |++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.
T Consensus       775 ---L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          775 ---SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             ---CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred             ---CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence               89999999976      778888999999999999999999999 58888765  6999999999999876666666


Q ss_pred             CCCCCCEEeCcCCcCe
Q 048194          539 SLYFLSYLNLSYNQLE  554 (558)
Q Consensus       539 ~l~~L~~L~l~~n~l~  554 (558)
                      ....+..+.|.+|+++
T Consensus       849 ~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          849 PYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             HHHHTTCCEEECCTTS
T ss_pred             ccccchheeecCCCcc
Confidence            6556666777766554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.4e-52  Score=452.33  Aligned_cols=448  Identities=29%  Similarity=0.375  Sum_probs=245.1

Q ss_pred             CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194           66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL  145 (558)
Q Consensus        66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  145 (558)
                      ++++|++++|.+.+..+.   +..+++|++|++++|.+.+. +|..++++++|++|++++|.+++.+|..  .+++|++|
T Consensus       201 ~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L  274 (768)
T 3rgz_A          201 NLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL  274 (768)
T ss_dssp             TCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred             cCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence            344444444444332222   44444444444444444443 4444444444444444444444333322  33444444


Q ss_pred             ecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh------
Q 048194          146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ------  219 (558)
Q Consensus       146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l------  219 (558)
                      ++++|.+++.+|......+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|......+..++.+      
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            44444443333321111124444444444444444444444444444444444444433333211122222222      


Q ss_pred             ----hchhhhcccCCCC-CCCEEEcccccCCcccChhhhcC--CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC
Q 048194          220 ----IKRVYSCLGLRTQ-KLTPLLLSSNNLNGTVQLDKILS--LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC  292 (558)
Q Consensus       220 ----i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  292 (558)
                          +|..+    ..++ +|++|++++|.+++.++.. +..  +++|++|++++|.+.+..+.. +..+++|+.|++++|
T Consensus       355 l~~~~p~~l----~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          355 FSGELPESL----TNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFN  428 (768)
T ss_dssp             EEECCCTTH----HHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSS
T ss_pred             cCccccHHH----HhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCC
Confidence                11111    1121 3333333333333222211 111  333444444444444333333 444444455555544


Q ss_pred             CCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccC
Q 048194          293 KLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNI  368 (558)
Q Consensus       293 ~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~  368 (558)
                      +++ .+|. +..+++|++|++++|.+.+.+|..+..++.  |++|++++|.+++..+.  ..+++|++|++++|++++.+
T Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT--LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC--ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            444 3333 444445555555555544444444444433  55555555555443332  12455555555555555444


Q ss_pred             CCC---CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc---------------------
Q 048194          369 HQL---PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK---------------------  424 (558)
Q Consensus       369 ~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~---------------------  424 (558)
                      |..   +.+|++|++++|.++         +.+|..++.+++|+.|++++|++.+.+|.                     
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFS---------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCE---------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             ChHHhcCCCCCEEECCCCccc---------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            432   234555555555554         45666677777777777777777655554                     


Q ss_pred             -------------------------------------------------ccccCCCCCEEECCCCcCcccCCccccCcee
Q 048194          425 -------------------------------------------------SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI  455 (558)
Q Consensus       425 -------------------------------------------------~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~  455 (558)
                                                                       .+..+++|+.|++++|.++|.+|..+..   
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~---  654 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS---  654 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG---
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc---
Confidence                                                             3444678999999999999999988765   


Q ss_pred             eccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchh
Q 048194          456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS  535 (558)
Q Consensus       456 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  535 (558)
                                  ++.|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+.+++.|+.||+++|+++|.+|.
T Consensus       655 ------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          655 ------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             ------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             ------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence                        89999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             hhcCCCCCCEEeCcCCc
Q 048194          536 QLASLYFLSYLNLSYNQ  552 (558)
Q Consensus       536 ~~~~l~~L~~L~l~~n~  552 (558)
                      . ..+.++......+|+
T Consensus       723 ~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          723 M-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             S-SSGGGSCGGGGCSCT
T ss_pred             c-hhhccCCHHHhcCCc
Confidence            4 344556666666774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-49  Score=425.67  Aligned_cols=452  Identities=20%  Similarity=0.146  Sum_probs=296.8

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      ..+++|++++|.+++..+.  .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..|+++++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            5799999999999987777  799999999999999999886 7889999999999999999999888999999999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY  224 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~  224 (558)
                      |++++|.+++..+. .++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+               
T Consensus       110 L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------  173 (606)
T 3t6q_A          110 LFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM---------------  173 (606)
T ss_dssp             EECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH---------------
T ss_pred             eeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh---------------
Confidence            99999999943333 58999999999999999986444455569999999999999986666544               


Q ss_pred             hcccCCCCCCC--EEEcccccCCcccChhhhc------------------------------------------------
Q 048194          225 SCLGLRTQKLT--PLLLSSNNLNGTVQLDKIL------------------------------------------------  254 (558)
Q Consensus       225 ~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~------------------------------------------------  254 (558)
                          ..+++|+  .|++++|.+.+..+ ..+.                                                
T Consensus       174 ----~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~  248 (606)
T 3t6q_A          174 ----SSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF  248 (606)
T ss_dssp             ----HTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred             ----hhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence                3333333  33444443332111 1110                                                


Q ss_pred             -CCC--CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccc
Q 048194          255 -SLG--NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVV  330 (558)
Q Consensus       255 -~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  330 (558)
                       .+.  +|++|++++|.+.+..+.. +..+++|+.|++++|+++.+|. +..+++|++|++++|++.+..|..+..++. 
T Consensus       249 ~~l~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-  326 (606)
T 3t6q_A          249 EGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-  326 (606)
T ss_dssp             GGGGGSEEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-
T ss_pred             chhhcCceeEEEeecCccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCc-
Confidence             000  3444455555444333322 4455555555555555555554 555555555555555554444444444433 


Q ss_pred             cceEEEcCCccccccCCC---CCCCccCEEEcccccCcccC--C---CCCCCCcEEEccCCcccccCCCC----------
Q 048194          331 GLHCLNLSHNFLVGFQAP---YSIPALRFIDLISNQLRGNI--H---QLPNNPIYIDFSNNNFTSSIPAD----------  392 (558)
Q Consensus       331 ~L~~L~ls~n~l~~~~~~---~~~~~L~~L~l~~n~~~~~~--~---~~~~~l~~l~l~~n~~~~~~~~~----------  392 (558)
                       |++|++++|.+.+..+.   ..+++|++|++++|.+.+..  +   ....+|++|++++|.+.+..+..          
T Consensus       327 -L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          327 -LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             -CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             -CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence             55555555544422221   12445555555555444322  1   12334445555554444210000          


Q ss_pred             -----CccCCCC-CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhh
Q 048194          393 -----TVNGTLP-DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK  466 (558)
Q Consensus       393 -----~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~  466 (558)
                           .+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++....            ....+.
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~~~  473 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ------------KTNSLQ  473 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC------------SSCGGG
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc------------cchhhc
Confidence                 0001222 2245555555555555555555555555555555555555555431110            002234


Q ss_pred             hhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEE
Q 048194          467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL  546 (558)
Q Consensus       467 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  546 (558)
                      .+++|++|++++|.+++..|..|+.+++|++|++++|++++..|..+.+++.| .|++++|++++..|..+..+++|++|
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence            58889999999999998888889999999999999999998888899999999 99999999998888888888999999


Q ss_pred             eCcCCcCeee
Q 048194          547 NLSYNQLEGR  556 (558)
Q Consensus       547 ~l~~n~l~~~  556 (558)
                      ++++|++++.
T Consensus       553 ~l~~N~~~c~  562 (606)
T 3t6q_A          553 NLRQNPLDCT  562 (606)
T ss_dssp             ECTTCCEECS
T ss_pred             eCCCCCcccc
Confidence            9999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-49  Score=424.33  Aligned_cols=450  Identities=20%  Similarity=0.160  Sum_probs=318.7

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+.+..+.  .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..|+++++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred             CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence            6899999999999987776  799999999999999999886 6888999999999999999999888999999999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchh----hh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALD----TQ  219 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~----~l  219 (558)
                      |++++|.+.+..+. .++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+ ..+..++    .+
T Consensus       109 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L  186 (606)
T 3vq2_A          109 LVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSL  186 (606)
T ss_dssp             EECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEE
T ss_pred             EEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhcccccccee
Confidence            99999999844333 68999999999999999986 579999999999999999999987666544 1111111    11


Q ss_pred             ---------hchhhhcccCCCCCCCEEEcccccCCcccChhhh-------------------------------------
Q 048194          220 ---------IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKI-------------------------------------  253 (558)
Q Consensus       220 ---------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------------------------------------  253 (558)
                               ++...    ....+|++|++++|.+.+......+                                     
T Consensus       187 ~l~~n~l~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~  262 (606)
T 3vq2_A          187 DMSLNPIDFIQDQA----FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT  262 (606)
T ss_dssp             ECTTCCCCEECTTT----TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred             eccCCCcceeCccc----ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence                     12111    2233677777776655422222222                                     


Q ss_pred             -------------------cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCC
Q 048194          254 -------------------LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN  314 (558)
Q Consensus       254 -------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n  314 (558)
                                         ..+++|+.|++++|.+....   .+..+++|+.|++++|.++.+|.+ .+++|++|++++|
T Consensus       263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n  338 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMN  338 (606)
T ss_dssp             EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESC
T ss_pred             HhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC-CCCccceeeccCC
Confidence                               33344455555555443221   144455555555555555555544 5555555555555


Q ss_pred             cccccCChhHHhhccccceEEEcCCccccccC--CC--CCCCccCEEEcccccCcccCC--CCCCCCcEEEccCCccccc
Q 048194          315 QISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--AP--YSIPALRFIDLISNQLRGNIH--QLPNNPIYIDFSNNNFTSS  388 (558)
Q Consensus       315 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~--~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~l~l~~n~~~~~  388 (558)
                      +..+..  .+..++  +|++|++++|.+++..  +.  ..+++|+.|++++|.+.+...  ....+|+.|++++|.+.+ 
T Consensus       339 ~~~~~~--~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-  413 (606)
T 3vq2_A          339 KGSISF--KKVALP--SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-  413 (606)
T ss_dssp             SSCEEC--CCCCCT--TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-
T ss_pred             cCccch--hhccCC--CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC-
Confidence            433322  122222  3666666666655542  11  235666666666666554221  123466666666666662 


Q ss_pred             CCCCCccCCCC-CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCccc-CCccccCceeeccccchhhhh
Q 048194          389 IPADTVNGTLP-DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDK-FPCSLYDAPITIKGLDIKLQK  466 (558)
Q Consensus       389 ~~~~~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~p~~~~~~~~~~~~~~~~~~~  466 (558)
                              ..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .|..+.               
T Consensus       414 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------  470 (606)
T 3vq2_A          414 --------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---------------  470 (606)
T ss_dssp             --------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---------------
T ss_pred             --------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---------------
Confidence                    233 3566667777777777777766666777777777777777777653 455443               


Q ss_pred             hhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCC-CCCE
Q 048194          467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY-FLSY  545 (558)
Q Consensus       467 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~  545 (558)
                      .+++|++|++++|.+++..+..++.+++|++|++++|++++..|..+.++++|+.|++++|+++ .+|..+..++ +|++
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF  549 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence            3889999999999999888888999999999999999999888999999999999999999998 6777788886 5999


Q ss_pred             EeCcCCcCeee
Q 048194          546 LNLSYNQLEGR  556 (558)
Q Consensus       546 L~l~~n~l~~~  556 (558)
                      |++++|++.+.
T Consensus       550 l~l~~N~~~c~  560 (606)
T 3vq2_A          550 FNLTNNSVACI  560 (606)
T ss_dssp             EECCSCCCCCS
T ss_pred             EEccCCCcccC
Confidence            99999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.1e-48  Score=413.51  Aligned_cols=432  Identities=22%  Similarity=0.204  Sum_probs=340.3

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|++++|.+.+..+.  .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..++++++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ccceEEECCCCccceeChh--hccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            7899999999999987777  799999999999999999886 7889999999999999999999766788999999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCC--EEeCccccCCCCCCcccccc-cc-------
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQ--QLQLANNQFGGSIPRFSNAS-SS-------  214 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~~-~~-------  214 (558)
                      |++++|.+.+.... .+..+++|++|++++|.+.+..+..+..+++|+  +|++++|.+.+..|..+... +.       
T Consensus       134 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~  212 (606)
T 3t6q_A          134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT  212 (606)
T ss_dssp             EECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             EECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence            99999999953322 355699999999999999988888899999999  99999999987766554321 00       


Q ss_pred             ------------------------------------------chhhh----------hchhhhcccCCCCCCCEEEcccc
Q 048194          215 ------------------------------------------ALDTQ----------IKRVYSCLGLRTQKLTPLLLSSN  242 (558)
Q Consensus       215 ------------------------------------------~l~~l----------i~~~~~~~~~~~~~L~~L~l~~n  242 (558)
                                                                .++.+          .+..+    ..+++|++|++++|
T Consensus       213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF----HCFSGLQELDLTAT  288 (606)
T ss_dssp             SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT----TTCTTCSEEECTTS
T ss_pred             hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh----ccccCCCEEeccCC
Confidence                                                      00000          11112    55667777777777


Q ss_pred             cCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC--CCCCCCCCEEecCCCccccc
Q 048194          243 NLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN--LKNQSQLQYLYLSENQISRE  319 (558)
Q Consensus       243 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~--~~~~~~L~~L~l~~n~l~~~  319 (558)
                      .++ .+| ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+. .+|.  +..+++|++|++++|.+.+.
T Consensus       289 ~l~-~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          289 HLS-ELP-SGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             CCS-CCC-SSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccC-CCC-hhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence            766 555 34666777777777777776554444 666777777777777665 5554  66777777777777777654


Q ss_pred             C--ChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCC----CCCCCcEEEccCCcccccCCC
Q 048194          320 I--PNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPA  391 (558)
Q Consensus       320 ~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~  391 (558)
                      .  +..+..++.  |++|++++|.+.+..+.  ..+++|+.|++++|++.+..+.    .+.+|++|++++|.+.     
T Consensus       366 ~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----  438 (606)
T 3t6q_A          366 DCCNLQLRNLSH--LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-----  438 (606)
T ss_dssp             EESTTTTTTCTT--CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB-----
T ss_pred             cCcchhcccCCC--CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC-----
Confidence            4  455555554  77777777777766543  2377777777777777655432    2457778888887776     


Q ss_pred             CCccCCCCCCCCCCCCCCEEECcCCcCCcc---CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhh
Q 048194          392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGT---VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL  468 (558)
Q Consensus       392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~  468 (558)
                          +..|..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|.+++..|..+..               +
T Consensus       439 ----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------l  499 (606)
T 3t6q_A          439 ----ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS---------------L  499 (606)
T ss_dssp             ----TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT---------------C
T ss_pred             ----CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc---------------c
Confidence                45677889999999999999999863   3367899999999999999999888877754               8


Q ss_pred             ccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch
Q 048194          469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP  534 (558)
Q Consensus       469 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  534 (558)
                      ++|++|++++|.+++..+..+..+++| .|++++|++++..|..+..+++|+.|++++|++....+
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999999999 99999999998888889999999999999999986544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-46  Score=408.44  Aligned_cols=479  Identities=21%  Similarity=0.201  Sum_probs=307.3

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+.+..+.  .+..+++|++|++++|.+.+. .|..++++++|++|++++|.+++..+..|+++++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence            5788999999888876655  688888999999998888876 7788888889999999888888544456888888999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccc-cccchhhh----
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNA-SSSALDTQ----  219 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~l~~l----  219 (558)
                      |++++|.+.+..+. .++++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+.. ....++.+    
T Consensus       102 L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            99988888733333 5788888888888888888777777888888888888888877655443211 11222222    


Q ss_pred             ------hchhhh-----------------------------------------------cccCCC--CCCCEEEcccccC
Q 048194          220 ------IKRVYS-----------------------------------------------CLGLRT--QKLTPLLLSSNNL  244 (558)
Q Consensus       220 ------i~~~~~-----------------------------------------------~~~~~~--~~L~~L~l~~n~l  244 (558)
                            .|..+.                                               .....+  ++|++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence                  111100                                               001222  2377777777777


Q ss_pred             CcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC------CCC-----CCCCCCCCCEEecCC
Q 048194          245 NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR------EIP-----NLKNQSQLQYLYLSE  313 (558)
Q Consensus       245 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~------~l~-----~~~~~~~L~~L~l~~  313 (558)
                      + .++...+..+++|++|++++|.+.+..+.. +..+++|+.|++++|...      .+|     .+..+++|++|++++
T Consensus       261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          261 N-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             C-EECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             C-ccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            6 344456777788888888888776554433 444455555555443221      122     134455555555555


Q ss_pred             CcccccCChhHHhhcc--------------------------ccceEEEcCCccccccCCC--CCCCccCEEEcccccCc
Q 048194          314 NQISREIPNWIWRVSV--------------------------VGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLR  365 (558)
Q Consensus       314 n~l~~~~~~~~~~~~~--------------------------~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~  365 (558)
                      |.+.+..+..+..+..                          +.|+.|++++|.+++..+.  ..+++|+.|++++|.+.
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            5555444443433332                          2355555555555554433  23666777777777666


Q ss_pred             ccCC----CCCCCCcEEEccCCcccccCCCC---------------Cc--cCCCCCCCCCCCCCCEEECcCCcCCccCCc
Q 048194          366 GNIH----QLPNNPIYIDFSNNNFTSSIPAD---------------TV--NGTLPDTFPRNCLLQTLDLNGNRPQGTVPK  424 (558)
Q Consensus       366 ~~~~----~~~~~l~~l~l~~n~~~~~~~~~---------------~~--~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~  424 (558)
                      +.++    ....+|+++++++|.+.+..+..               .+  .+.+|..+..+++|+.|++++|.+++..+.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~  498 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD  498 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence            5444    22456666666666655322111               00  134455555566666666666666655555


Q ss_pred             ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCc
Q 048194          425 SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA  504 (558)
Q Consensus       425 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  504 (558)
                      .+..+++|++|++++|.+++..+..+.       ......+..+++|++|++++|.++...+..|+.+++|++|++++|+
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLARLWKHANP-------GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGGGGSTTST-------TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhccccccCEEeCCCCCccccchhhcc-------CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence            556666666666666665543221110       0011123457888888888888886555668888888889998888


Q ss_pred             CcccccccccCCCCCCeecCCCCcCcccchhhhc-CCCCCCEEeCcCCcCeee
Q 048194          505 LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA-SLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       505 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~  556 (558)
                      +++..+..|..+++|+.|++++|++++..+..+. .+++|+++++++|++...
T Consensus       572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            8865566678888889999999888887777776 678888899988887653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-48  Score=410.84  Aligned_cols=437  Identities=20%  Similarity=0.207  Sum_probs=366.2

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .+++.|+++++.+++..+.  .+..+++|++|++++|.+.+. .+..|+++++|++|++++|.+++..|..|.++++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            5799999999999877776  799999999999999999876 6788999999999999999999777889999999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRV  223 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~  223 (558)
                      |++++|.++ .++...++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+              
T Consensus       105 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------  169 (570)
T 2z63_A          105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--------------  169 (570)
T ss_dssp             EECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG--------------
T ss_pred             ccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc--------------
Confidence            999999998 4543358999999999999999986 479999999999999999999987666554              


Q ss_pred             hhcccCCCCCC----CEEEcccccCCcccChhhhcCCCCCCEEEccCCc-------------------------------
Q 048194          224 YSCLGLRTQKL----TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS-------------------------------  268 (558)
Q Consensus       224 ~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------------------------  268 (558)
                           ..+++|    +.|++++|.+. .++...+... +|++|++++|.                               
T Consensus       170 -----~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  242 (570)
T 2z63_A          170 -----RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  242 (570)
T ss_dssp             -----HHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred             -----cchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence                 444455    67777777776 3333444443 56666666552                               


Q ss_pred             ---------------------------ccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccC
Q 048194          269 ---------------------------LAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREI  320 (558)
Q Consensus       269 ---------------------------l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~  320 (558)
                                                 +.+..+.. +..+++|+.|++++|.++.+|. +..+ +|++|++++|.+. .+
T Consensus       243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l  319 (570)
T 2z63_A          243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QF  319 (570)
T ss_dssp             CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred             hhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-cc
Confidence                                       22222222 6667899999999999999998 7777 9999999999986 55


Q ss_pred             ChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccC--C---CCCCCCcEEEccCCcccccCCCCCcc
Q 048194          321 PNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI--H---QLPNNPIYIDFSNNNFTSSIPADTVN  395 (558)
Q Consensus       321 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~--~---~~~~~l~~l~l~~n~~~~~~~~~~~~  395 (558)
                      |..  .  .++|++|++++|.+....+...+++|+.|++++|.+.+..  +   ....+|+++++++|.+.         
T Consensus       320 ~~~--~--l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~---------  386 (570)
T 2z63_A          320 PTL--K--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---------  386 (570)
T ss_dssp             CBC--B--CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE---------
T ss_pred             Ccc--c--ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc---------
Confidence            542  3  3459999999999887776666999999999999988543  2   24678999999999988         


Q ss_pred             CCCCCCCCCCCCCCEEECcCCcCCccCC-cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEE
Q 048194          396 GTLPDTFPRNCLLQTLDLNGNRPQGTVP-KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI  474 (558)
Q Consensus       396 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L  474 (558)
                       .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..               +++|++|
T Consensus       387 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------l~~L~~L  450 (570)
T 2z63_A          387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------LSSLEVL  450 (570)
T ss_dssp             -EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------CTTCCEE
T ss_pred             -cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---------------CCcCcEE
Confidence             344458889999999999999987665 57889999999999999999888776654               8999999


Q ss_pred             ECCCCccc-ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 048194          475 DFSTNNFK-GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL  553 (558)
Q Consensus       475 ~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l  553 (558)
                      ++++|.++ +.+|..++.+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            99999997 56788999999999999999999988899999999999999999999988888899999999999999999


Q ss_pred             eeecC
Q 048194          554 EGRFQ  558 (558)
Q Consensus       554 ~~~~~  558 (558)
                      ++.+|
T Consensus       531 ~~~~~  535 (570)
T 2z63_A          531 DCSCP  535 (570)
T ss_dssp             CCCTT
T ss_pred             cCCCc
Confidence            98765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7e-47  Score=404.70  Aligned_cols=429  Identities=19%  Similarity=0.157  Sum_probs=359.1

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..+..++++++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  132 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK  132 (606)
T ss_dssp             TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred             ccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence            7899999999999987777  789999999999999999887 7899999999999999999999777788999999999


Q ss_pred             Eecccccccc-cccchhhcCCCCccEEEccCCccCccCCccccCCCCCC----EEeCccccCCCCCCccccccccchhhh
Q 048194          145 LDFSFNQFSG-SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQ----QLQLANNQFGGSIPRFSNASSSALDTQ  219 (558)
Q Consensus       145 L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~l  219 (558)
                      |++++|.+.+ .+|. .++++++|++|++++|.+++..+..+..+++|+    +|++++|.+++..+..+...  .++.+
T Consensus       133 L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~--~L~~L  209 (606)
T 3vq2_A          133 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHEL  209 (606)
T ss_dssp             EECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC--EEEEE
T ss_pred             EeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc--eeeee
Confidence            9999999985 3465 689999999999999999987777777665544    78888888775444332210  12111


Q ss_pred             -----------hc-----------------------------------------------------hhhhcccCCCCCCC
Q 048194          220 -----------IK-----------------------------------------------------RVYSCLGLRTQKLT  235 (558)
Q Consensus       220 -----------i~-----------------------------------------------------~~~~~~~~~~~~L~  235 (558)
                                 +|                                                     ..... ...+++|+
T Consensus       210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~  288 (606)
T 3vq2_A          210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVS  288 (606)
T ss_dssp             EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred             eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCC
Confidence                       00                                                     00000 25678999


Q ss_pred             EEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCc
Q 048194          236 PLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ  315 (558)
Q Consensus       236 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~  315 (558)
                      .|++++|.+. .++  .+..+++|++|++++|.+ +..+ . + .+++|+.|++++|+...-..+..+++|++|++++|.
T Consensus       289 ~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          289 AMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-T-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA  361 (606)
T ss_dssp             EEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-C-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC
T ss_pred             EEEecCccch-hhh--hccccccCCEEEcccccC-cccc-c-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCc
Confidence            9999999986 566  688899999999999999 4555 3 5 899999999999955422247789999999999999


Q ss_pred             cccc--CChhHHhhccccceEEEcCCccccccCCCC-CCCccCEEEcccccCcccCC----CCCCCCcEEEccCCccccc
Q 048194          316 ISRE--IPNWIWRVSVVGLHCLNLSHNFLVGFQAPY-SIPALRFIDLISNQLRGNIH----QLPNNPIYIDFSNNNFTSS  388 (558)
Q Consensus       316 l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~~n~~~~~  388 (558)
                      +.+.  .+..+..++.  |++|++++|.+++.+... .+++|+.|++++|++.+..+    ..+.+|++|++++|.+.  
T Consensus       362 l~~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--  437 (606)
T 3vq2_A          362 LSFSGCCSYSDLGTNS--LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK--  437 (606)
T ss_dssp             EEEEEECCHHHHCCSC--CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE--
T ss_pred             cCCCcchhhhhccCCc--ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC--
Confidence            9865  3777777766  999999999999877554 49999999999999997765    23679999999999998  


Q ss_pred             CCCCCccCCCCCCCCCCCCCCEEECcCCcCCc-cCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194          389 IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI  467 (558)
Q Consensus       389 ~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~  467 (558)
                             +..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..               
T Consensus       438 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------  495 (606)
T 3vq2_A          438 -------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT---------------  495 (606)
T ss_dssp             -------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---------------
T ss_pred             -------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc---------------
Confidence                   4567889999999999999999997 47889999999999999999999888877654               


Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCC-CCCeecCCCCcCcccch
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK-RLESLDLSMNNLSRAIP  534 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~  534 (558)
                      +++|++|++++|.+++..|..++.+++|++|++++|+++ .+|..+..++ +|+.|++++|++....+
T Consensus       496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            899999999999999988999999999999999999999 7888899997 59999999999986444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9e-47  Score=399.07  Aligned_cols=432  Identities=17%  Similarity=0.160  Sum_probs=331.0

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|++++|.+++..+.  .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+++..|..|+++++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence            4799999999999887777  789999999999999999886 6788999999999999999999777777999999999


Q ss_pred             Eeccccccccc-ccchhhcCCCCccEEEccCCccCccCC-ccccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194          145 LDFSFNQFSGS-ISSIRWEHLLNLVCAVLSDNSLDGSIP-RSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR  222 (558)
Q Consensus       145 L~L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~  222 (558)
                      |++++|.+++. .+. .++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+             
T Consensus       103 L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-------------  168 (549)
T 2z81_A          103 LNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-------------  168 (549)
T ss_dssp             EECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-------------
T ss_pred             EECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-------------
Confidence            99999999853 243 58899999999999998544554 678999999999999999998777766             


Q ss_pred             hhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccC--CCccc----------------------
Q 048194          223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDE--SSRNY----------------------  278 (558)
Q Consensus       223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~----------------------  278 (558)
                            ..+++|++|++++|.+. .++...+..+++|++|++++|++.+..  +....                      
T Consensus       169 ------~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          169 ------KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             ------TTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ------hccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence                  55566666666666554 334333445566666666666655431  11112                      


Q ss_pred             ------CCCCCCCEEecCCCCCCCCCC--------CCCCCCCCEEecCCCccccc-----CChhHHhhccccceEEEcCC
Q 048194          279 ------SFSPMLELLNLASCKLREIPN--------LKNQSQLQYLYLSENQISRE-----IPNWIWRVSVVGLHCLNLSH  339 (558)
Q Consensus       279 ------~~~~~L~~L~l~~n~l~~l~~--------~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~~~L~~L~ls~  339 (558)
                            ..++.|+.+++++|.+..++.        +..+++++.|++.++.+...     ++.......  ++++|++++
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~--~L~~L~l~~  319 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE--KVKRITVEN  319 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST--TCCEEEEES
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc--cceEEEecc
Confidence                  234455555555554433221        34556667777666654321     122222223  489999999


Q ss_pred             ccccccCCCC--CCCccCEEEcccccCcccCC------CCCCCCcEEEccCCcccccCCCCCccCCCC---CCCCCCCCC
Q 048194          340 NFLVGFQAPY--SIPALRFIDLISNQLRGNIH------QLPNNPIYIDFSNNNFTSSIPADTVNGTLP---DTFPRNCLL  408 (558)
Q Consensus       340 n~l~~~~~~~--~~~~L~~L~l~~n~~~~~~~------~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p---~~~~~~~~L  408 (558)
                      |.+..++...  .+++|+.|++++|++.+.++      ..+++|++|++++|.+++          ++   ..+..+++|
T Consensus       320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~~l~~L  389 (549)
T 2z81_A          320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS----------MQKTGEILLTLKNL  389 (549)
T ss_dssp             SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC----------HHHHHHHGGGCTTC
T ss_pred             CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc----------cccchhhhhcCCCC
Confidence            9988665543  38999999999999987542      346789999999999872          22   346778889


Q ss_pred             CEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchh
Q 048194          409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILED  488 (558)
Q Consensus       409 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  488 (558)
                      ++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+                 .++|++|++++|++++..   
T Consensus       390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-----------------~~~L~~L~Ls~N~l~~~~---  447 (549)
T 2z81_A          390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-----------------PQTLEVLDVSNNNLDSFS---  447 (549)
T ss_dssp             CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-----------------CTTCSEEECCSSCCSCCC---
T ss_pred             CEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-----------------cCCceEEECCCCChhhhc---
Confidence            99999999998 678888889999999999999873 33322                 468999999999998743   


Q ss_pred             hcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeec
Q 048194          489 VGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF  557 (558)
Q Consensus       489 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  557 (558)
                       ..+++|++|++++|+++ .+|. ...+++|+.|+|++|++++..|..+..+++|++|++++|++++..
T Consensus       448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence             57899999999999998 6776 578999999999999999988888999999999999999998765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-46  Score=411.40  Aligned_cols=472  Identities=21%  Similarity=0.165  Sum_probs=311.9

Q ss_pred             CCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCC
Q 048194           54 CDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP  133 (558)
Q Consensus        54 c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  133 (558)
                      |.|..+.+ -..++++|+|++|.+++..+.  .+..+++|++|++++|...+...|..|.++++|++|+|++|.+.+..|
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            56777777 448899999999999887777  799999999999999976655237889999999999999999998889


Q ss_pred             hhccCCCCCcEEecccccccccccc-hhhcCCCCccEEEccCCccCccCC-ccccCCCCCCEEeCccccCCCCCCccccc
Q 048194          134 VQISRMARLVALDFSFNQFSGSISS-IRWEHLLNLVCAVLSDNSLDGSIP-RSMFEFPMLQQLQLANNQFGGSIPRFSNA  211 (558)
Q Consensus       134 ~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  211 (558)
                      ..|.++++|++|+|++|.+++.++. ..++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            9999999999999999999975533 248899999999999999987655 57899999999999999998777665521


Q ss_pred             c-ccchhhh----------hchhhhcccCCCC------CCCEEEcccccCCcccChhhh---------------------
Q 048194          212 S-SSALDTQ----------IKRVYSCLGLRTQ------KLTPLLLSSNNLNGTVQLDKI---------------------  253 (558)
Q Consensus       212 ~-~~~l~~l----------i~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~~~~~---------------------  253 (558)
                      - ...++.+          +|..+    ..+.      .|+.|++++|.+++..+....                     
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~  246 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDW----GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG  246 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCC----CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred             ccCCccceEECCCCccccccccch----hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence            1 0222222          11111    2222      377777777765543332111                     


Q ss_pred             --------------cC--CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCc
Q 048194          254 --------------LS--LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ  315 (558)
Q Consensus       254 --------------~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~  315 (558)
                                    ..  .++|++|++++|.+.+..+.. +..+++|+.|++++|+++.++.  +..+++|++|++++|.
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence                          11  246777777777776554444 6677777777777777775533  6677777777777777


Q ss_pred             ccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCC
Q 048194          316 ISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADT  393 (558)
Q Consensus       316 l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  393 (558)
                      +.+..|..+..++.  |++|++++|.+....+.  ..+++|+.|++++|.+++...  +++++.+++++|.++       
T Consensus       326 l~~~~~~~~~~l~~--L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~-------  394 (844)
T 3j0a_A          326 LGELYSSNFYGLPK--VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLV-------  394 (844)
T ss_dssp             CSCCCSCSCSSCTT--CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCC-------
T ss_pred             CCccCHHHhcCCCC--CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcc-------
Confidence            76665666665555  77777777777666553  236777777777777663221  456666666666665       


Q ss_pred             ccCCCCCCCCCCCCCCEEECcCCcCCccC-CcccccCCCCCEEECCCCcCcccCCccccCc-----eeecc---------
Q 048194          394 VNGTLPDTFPRNCLLQTLDLNGNRPQGTV-PKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA-----PITIK---------  458 (558)
Q Consensus       394 ~~~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~-----~~~~~---------  458 (558)
                         .+|..   ...++.|++++|.+.+.. +..+..+++|+.|++++|.+++..+......     .+.+.         
T Consensus       395 ---~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          395 ---TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             ---CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             ---ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence               22322   223444555555444321 1123344555555555555443222211000     00000         


Q ss_pred             -ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhh
Q 048194          459 -GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQL  537 (558)
Q Consensus       459 -~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  537 (558)
                       +.....+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+.  ++|+.|+|++|++++..|..+
T Consensus       469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~  546 (844)
T 3j0a_A          469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF  546 (844)
T ss_dssp             SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred             cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh
Confidence             00011223467777777777777777777777777788888887777755555444  677778888887777666554


Q ss_pred             cCCCCCCEEeCcCCcCee
Q 048194          538 ASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       538 ~~l~~L~~L~l~~n~l~~  555 (558)
                         .+|+.+++++|++..
T Consensus       547 ---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          547 ---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             ---SSCCEEEEEEECCCC
T ss_pred             ---CCcCEEEecCCCccc
Confidence               367777777777664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-44  Score=392.02  Aligned_cols=434  Identities=22%  Similarity=0.218  Sum_probs=266.5

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+.+..+.  .+..+++|++|++++|.+... .+..|+++++|++|++++|.+++..|..|+++++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  125 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT  125 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred             CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence            5677777777777666555  667777777777777777653 3345677777777777777776555566777777777


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCcccc--CCCCCCEEeCccccCCCCCCcccc------------
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF--EFPMLQQLQLANNQFGGSIPRFSN------------  210 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~------------  210 (558)
                      |++++|.+++..+. .++++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+.            
T Consensus       126 L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  204 (680)
T 1ziw_A          126 LDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN  204 (680)
T ss_dssp             EECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred             EECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence            77777776644333 356666666666666666544444332  345556666655555543332211            


Q ss_pred             --------------------------------------ccc--cchhhh----------hchhhhcccCCCCCCCEEEcc
Q 048194          211 --------------------------------------ASS--SALDTQ----------IKRVYSCLGLRTQKLTPLLLS  240 (558)
Q Consensus       211 --------------------------------------~~~--~~l~~l----------i~~~~~~~~~~~~~L~~L~l~  240 (558)
                                                            ..+  ..++.+          .+..+    ..+++|++|+++
T Consensus       205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~  280 (680)
T 1ziw_A          205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF----AWLPQLEYFFLE  280 (680)
T ss_dssp             CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT----TTCTTCCEEECC
T ss_pred             cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc----cCcccccEeeCC
Confidence                                                  000  112222          22333    667788888888


Q ss_pred             cccCCcccChhhhcCCC---------------------------------CCCEEEccCCcccccCCCcccCCCCCCCEE
Q 048194          241 SNNLNGTVQLDKILSLG---------------------------------NLAKLDLSYNSLAVDESSRNYSFSPMLELL  287 (558)
Q Consensus       241 ~n~l~~~~~~~~~~~l~---------------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  287 (558)
                      +|.+.+..+ ..+..++                                 +|++|++++|.+.+..+.. +..+++|++|
T Consensus       281 ~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L  358 (680)
T 1ziw_A          281 YNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYL  358 (680)
T ss_dssp             SCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEE
T ss_pred             CCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH-hccccCCcEE
Confidence            887764322 3344444                                 4444444444444333222 3344444444


Q ss_pred             ecCCC----------------------------CCCCCCC--CCCCCCCCEEecCCCcccccCC-hhHHhhccccceEEE
Q 048194          288 NLASC----------------------------KLREIPN--LKNQSQLQYLYLSENQISREIP-NWIWRVSVVGLHCLN  336 (558)
Q Consensus       288 ~l~~n----------------------------~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~  336 (558)
                      ++++|                            +++.++.  +..+++|++|++++|.+.+.+| ..+..+..  |++|+
T Consensus       359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~--L~~L~  436 (680)
T 1ziw_A          359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN--IFEIY  436 (680)
T ss_dssp             ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT--CCEEE
T ss_pred             ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc--ccEEe
Confidence            44333                            2222211  3334444444444444433332 22322222  44444


Q ss_pred             cCCccccccCCC--CCCCccCEEEcccccCc--ccCCCC---CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194          337 LSHNFLVGFQAP--YSIPALRFIDLISNQLR--GNIHQL---PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ  409 (558)
Q Consensus       337 ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~--~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~  409 (558)
                      +++|.+.+..+.  ..++.|+.|++++|.+.  +.+|..   +.+|++|++++|.++         +..+..+..+++|+
T Consensus       437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~---------~i~~~~~~~l~~L~  507 (680)
T 1ziw_A          437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA---------NINDDMLEGLEKLE  507 (680)
T ss_dssp             CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCC
T ss_pred             cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC---------cCChhhhccccccC
Confidence            444444433322  12455555555555443  223322   346778888888777         34456688999999


Q ss_pred             EEECcCCcCCccCC--------cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          410 TLDLNGNRPQGTVP--------KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       410 ~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      +|++++|.+++..+        ..+..+++|++|++++|.++...+..+.               .+++|+.|++++|++
T Consensus       508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~---------------~l~~L~~L~Ls~N~l  572 (680)
T 1ziw_A          508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK---------------DLFELKIIDLGLNNL  572 (680)
T ss_dssp             EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT---------------TCTTCCEEECCSSCC
T ss_pred             EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc---------------cccCcceeECCCCCC
Confidence            99999999986422        2378899999999999999843333343               389999999999999


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCccccccccc-CCCCCCeecCCCCcCcccch
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG-NLKRLESLDLSMNNLSRAIP  534 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~  534 (558)
                      ++..+..|..+++|+.|++++|++++..+..+. .+++|+.|++++|++....+
T Consensus       573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            987777889999999999999999987777777 78999999999999986543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-45  Score=401.46  Aligned_cols=430  Identities=21%  Similarity=0.196  Sum_probs=308.2

Q ss_pred             CCEEEEEcCCCCccccc-cCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChh--ccCCCC
Q 048194           65 GHVIGLDLSTESISGGI-ENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQ--ISRMAR  141 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~  141 (558)
                      .+++.|++++|...+.+ +.  .+..+++|++|+|++|.+.+. .|..|+++++|++|+|++|.+++.+|..  +.++++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             ccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            67889999988666555 44  688899999999999988876 7888999999999999999988766665  888999


Q ss_pred             CcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCC--CCCCEEeCccccCCCCCCcccccccc-----
Q 048194          142 LVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEF--PMLQQLQLANNQFGGSIPRFSNASSS-----  214 (558)
Q Consensus       142 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~-----  214 (558)
                      |++|++++|.+++..+...++++++|++|++++|.+.+..+..+..+  ++|++|++++|.+.+..|..+.....     
T Consensus       125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM  204 (844)
T ss_dssp             CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred             CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence            99999999988855443358889999999999988877777666555  55666666666555444332211000     


Q ss_pred             chhhh----------hchhhh--------------------------------cccC--CCCCCCEEEcccccCCcccCh
Q 048194          215 ALDTQ----------IKRVYS--------------------------------CLGL--RTQKLTPLLLSSNNLNGTVQL  250 (558)
Q Consensus       215 ~l~~l----------i~~~~~--------------------------------~~~~--~~~~L~~L~l~~n~l~~~~~~  250 (558)
                      .++.+          ++..+.                                ....  ..++|+.|++++|.+. .++.
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~  283 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS  283 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECS
T ss_pred             ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccCh
Confidence            01111          000000                                0001  2368999999999998 4455


Q ss_pred             hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194          251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVS  328 (558)
Q Consensus       251 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  328 (558)
                      ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++.++.  +..+++|++|++++|.+.+..+..+..++
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  362 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE  362 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence            77889999999999999998776666 8889999999999999987744  88999999999999999776666676666


Q ss_pred             cccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCC
Q 048194          329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL  408 (558)
Q Consensus       329 ~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L  408 (558)
                      .  |++|++++|.++.+..   +++|+.+++++|++. .+|....+++.+++++|.+.+.        ..+..+..+++|
T Consensus       363 ~--L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l--------~~~~~~~~l~~L  428 (844)
T 3j0a_A          363 K--LQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENL--------DILYFLLRVPHL  428 (844)
T ss_dssp             C--CCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSS--------TTHHHHTTCTTC
T ss_pred             C--CCEEECCCCCCCcccC---CCCcchhccCCCCcc-cccccccccceeecccCccccC--------chhhhhhcCCcc
Confidence            5  9999999999886544   778888888888877 4555555666666666666521        001112344445


Q ss_pred             CEEECcCCcCCcc------------------------------CCcccccCCCCCEEECCCCcCcccCCccccCceeecc
Q 048194          409 QTLDLNGNRPQGT------------------------------VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK  458 (558)
Q Consensus       409 ~~L~l~~n~l~~~------------------------------~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~  458 (558)
                      +.|++++|.+++.                              .+..+..+++|+.|++++|.+++..|..+        
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------  500 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF--------  500 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS--------
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc--------
Confidence            5555555555432                              22334444555555555555544444333        


Q ss_pred             ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194          459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       459 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  533 (558)
                             ..+++|++|+|++|++++..+..+.  ++|+.|++++|++++..|..+   .+|+.|++++|++....
T Consensus       501 -------~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          501 -------SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             -------SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred             -------cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence                   3489999999999999987776665  899999999999998888765   48999999999987543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.9e-45  Score=392.03  Aligned_cols=409  Identities=19%  Similarity=0.267  Sum_probs=339.7

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCc------c---------------------------CCChhcc
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFA------G---------------------------QIPVQIS  137 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------~---------------------------~~p~~l~  137 (558)
                      .+++.|+|+++.+.+. +|..++++++|++|+|++|.+.      +                           .+|..+.
T Consensus        81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            5788999999999988 9999999999999999999761      1                           1111111


Q ss_pred             -------------------CCCCCcEEecc--cccccccccchhhcCCCCccEEEccCCccCcc----------------
Q 048194          138 -------------------RMARLVALDFS--FNQFSGSISSIRWEHLLNLVCAVLSDNSLDGS----------------  180 (558)
Q Consensus       138 -------------------~l~~L~~L~L~--~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------  180 (558)
                                         ....++.+.+.  .|.+++ +|. .++++++|++|++++|.+++.                
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence                               11122222232  578886 776 699999999999999999985                


Q ss_pred             -CCcccc--CCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc-CCc-ccChhhhcC
Q 048194          181 -IPRSMF--EFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN-LNG-TVQLDKILS  255 (558)
Q Consensus       181 -~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~  255 (558)
                       +|..++  ++++|++|++++|.+.+.+|..+                   ..+++|++|++++|+ ++| .+| ..+..
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-------------------~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~  297 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-------------------KALPEMQLINVACNRGISGEQLK-DDWQA  297 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-------------------TTCSSCCEEECTTCTTSCHHHHH-HHHHH
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHH-------------------hcCCCCCEEECcCCCCCccccch-HHHHh
Confidence             999999  99999999999999999999877                   899999999999998 887 666 34555


Q ss_pred             C------CCCCEEEccCCcccccCCC-cccCCCCCCCEEecCCCCCC-CCCCCCCCCCCCEEecCCCcccccCChhHHhh
Q 048194          256 L------GNLAKLDLSYNSLAVDESS-RNYSFSPMLELLNLASCKLR-EIPNLKNQSQLQYLYLSENQISREIPNWIWRV  327 (558)
Q Consensus       256 l------~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~-~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  327 (558)
                      +      ++|++|++++|.++ ..|. ..+..+++|+.|++++|+++ .+|.+..+++|++|++++|++. .+|..+..+
T Consensus       298 L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  375 (636)
T 4eco_A          298 LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGF  375 (636)
T ss_dssp             HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred             hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence            4      99999999999998 5665 13889999999999999999 9998888999999999999997 788776554


Q ss_pred             cccc-ceEEEcCCccccccCCCCC---CCccCEEEcccccCcccCCCCCC----------CCcEEEccCCcccccCCCCC
Q 048194          328 SVVG-LHCLNLSHNFLVGFQAPYS---IPALRFIDLISNQLRGNIHQLPN----------NPIYIDFSNNNFTSSIPADT  393 (558)
Q Consensus       328 ~~~~-L~~L~ls~n~l~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~----------~l~~l~l~~n~~~~~~~~~~  393 (558)
                        ++ |++|++++|.++.++....   +++|+.|++++|.+.+.+|..+.          +|++|++++|.++       
T Consensus       376 --~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------  446 (636)
T 4eco_A          376 --TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-------  446 (636)
T ss_dssp             --CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------
T ss_pred             --cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-------
Confidence              34 9999999999997665433   45899999999999988776444          8999999999998       


Q ss_pred             ccCCCCCC-CCCCCCCCEEECcCCcCCccCCcc-cccC-------CCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194          394 VNGTLPDT-FPRNCLLQTLDLNGNRPQGTVPKS-IAKC-------KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL  464 (558)
Q Consensus       394 ~~~~~p~~-~~~~~~L~~L~l~~n~l~~~~~~~-l~~l-------~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~  464 (558)
                         .+|.. +..+++|++|++++|.++ .+|.. +...       ++|+.|++++|.++ .+|..+..            
T Consensus       447 ---~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------  509 (636)
T 4eco_A          447 ---KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------  509 (636)
T ss_dssp             ---SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST------------
T ss_pred             ---cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh------------
Confidence               45654 445889999999999999 55543 3333       39999999999998 67766540            


Q ss_pred             hhhhccceEEECCCCcccccCchhhcccCCCCeeeC------cCCcCcccccccccCCCCCCeecCCCCcCcccchhhhc
Q 048194          465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNL------SHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLA  538 (558)
Q Consensus       465 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  538 (558)
                       ..+++|++|++++|.+++ +|..+..+++|++|++      ++|++.+.+|..+.++++|++|+|++|++ +.+|..+.
T Consensus       510 -~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          510 -TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             -TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             -ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence             138999999999999998 8899999999999999      56778889999999999999999999999 57887765


Q ss_pred             CCCCCCEEeCcCCcCee
Q 048194          539 SLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       539 ~l~~L~~L~l~~n~l~~  555 (558)
                        ++|++|++++|++..
T Consensus       587 --~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          587 --PNISVLDIKDNPNIS  601 (636)
T ss_dssp             --TTCCEEECCSCTTCE
T ss_pred             --CcCCEEECcCCCCcc
Confidence              799999999998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=382.26  Aligned_cols=416  Identities=20%  Similarity=0.204  Sum_probs=343.0

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      +++++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+. .++++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccc
Confidence            5799999999999886 677899999999999999999987788899999999999999999844444 68999999999


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ  249 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  249 (558)
                      ++++|.+.+..+..++++++|++|++++|.+.+ .+|..+                   ..+++|++|++++|.++ .++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-------------------~~l~~L~~L~l~~n~l~-~~~  165 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQ-SIY  165 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-------------------GGCTTCCEEECTTSCCC-EEC
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhh-------------------cccCCCCEEeCcCCccc-eec
Confidence            999999986655579999999999999999986 467766                   88999999999999998 555


Q ss_pred             hhhhcCCCCC----CEEEccCCcccccCCCcccCCCCCCCEEecCCCCC-------------------------------
Q 048194          250 LDKILSLGNL----AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL-------------------------------  294 (558)
Q Consensus       250 ~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-------------------------------  294 (558)
                      ...+..+++|    +++++++|.+.+..+.. +... +|+.|++++|..                               
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHH-hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            5667777777    89999999998776654 5444 688888777621                               


Q ss_pred             ---------------------------C-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc
Q 048194          295 ---------------------------R-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF  345 (558)
Q Consensus       295 ---------------------------~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  345 (558)
                                                 . .+|. +..+++|++|++++|.+. .+|..+... .  |++|++++|.+..+
T Consensus       244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~--L~~L~l~~n~~~~l  319 (570)
T 2z63_A          244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G--WQHLELVNCKFGQF  319 (570)
T ss_dssp             EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C--CSEEEEESCBCSSC
T ss_pred             hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C--ccEEeeccCccccc
Confidence                                       1 2233 566788888888888876 567666555 3  88888888888754


Q ss_pred             CCCCCCCccCEEEcccccCcccCCC-CCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc
Q 048194          346 QAPYSIPALRFIDLISNQLRGNIHQ-LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK  424 (558)
Q Consensus       346 ~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~  424 (558)
                      +. ..+++|+.|++++|.+.+..+. .+++|++|++++|.+++.       +..|..+..+++|++|++++|.+.+..+ 
T Consensus       320 ~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~-  390 (570)
T 2z63_A          320 PT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK-------GCCSQSDFGTTSLKYLDLSFNGVITMSS-  390 (570)
T ss_dssp             CB-CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE-------EEEEHHHHTCSCCCEEECCSCSEEEEEE-
T ss_pred             Cc-ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc-------ccccccccccCccCEEECCCCccccccc-
Confidence            43 4588888888888887766553 467888999988888732       1124556778889999999998885444 


Q ss_pred             ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCc
Q 048194          425 SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA  504 (558)
Q Consensus       425 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  504 (558)
                      .+..+++|+.|++++|.+.+..|...              +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       391 ~~~~l~~L~~L~l~~n~l~~~~~~~~--------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          391 NFLGLEQLEHLDFQHSNLKQMSEFSV--------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             EEETCTTCCEEECTTSEEESCTTSCT--------------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             cccccCCCCEEEccCCccccccchhh--------------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence            48889999999999998887655322              1248999999999999999899999999999999999999


Q ss_pred             Cc-ccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeec
Q 048194          505 LT-GSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRF  557 (558)
Q Consensus       505 l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  557 (558)
                      ++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..
T Consensus       457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence            97 578999999999999999999999988999999999999999999998854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.5e-44  Score=376.48  Aligned_cols=426  Identities=19%  Similarity=0.192  Sum_probs=307.9

Q ss_pred             EEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEec
Q 048194           68 IGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDF  147 (558)
Q Consensus        68 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  147 (558)
                      +.+++++++++. +|.  .+.  ++|++|++++|.+.+. .|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus         3 ~~l~ls~n~l~~-ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSS-CCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCccc-ccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence            467888888874 444  333  7888888888888776 5677888888888888888888777788888888888888


Q ss_pred             ccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhc
Q 048194          148 SFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSC  226 (558)
Q Consensus       148 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~  226 (558)
                      ++|+++ .+|..   .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+.   .+                 
T Consensus        77 s~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~-----------------  132 (520)
T 2z7x_B           77 SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SV-----------------  132 (520)
T ss_dssp             CSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GG-----------------
T ss_pred             CCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hc-----------------
Confidence            888887 56542   78888888888888876 4677888888888888888887642   12                 


Q ss_pred             ccCCCCCC--CEEEcccccC--CcccChhhhcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCC-------C
Q 048194          227 LGLRTQKL--TPLLLSSNNL--NGTVQLDKILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-------L  294 (558)
Q Consensus       227 ~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-------l  294 (558)
                        ..+++|  ++|++++|.+  .+..+ ..+..+. ....+++++|.+.+..+...+..+++|+.+++++|.       +
T Consensus       133 --~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  209 (520)
T 2z7x_B          133 --LPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF  209 (520)
T ss_dssp             --GGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred             --cccccceeeEEEeeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence              445556  8888887777  43433 2333333 222455666666555555445566666666666664       1


Q ss_pred             C-CCCCCCCCC---------------------------CCCEEecCCCcccccCChhH-----HhhccccceEEEcCCcc
Q 048194          295 R-EIPNLKNQS---------------------------QLQYLYLSENQISREIPNWI-----WRVSVVGLHCLNLSHNF  341 (558)
Q Consensus       295 ~-~l~~~~~~~---------------------------~L~~L~l~~n~l~~~~~~~~-----~~~~~~~L~~L~ls~n~  341 (558)
                      . .+|.+..++                           +|++|++++|++.|.+|..+     ..+..  |+.+++++|.
T Consensus       210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~--L~~l~l~~n~  287 (520)
T 2z7x_B          210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA--LSIHQVVSDV  287 (520)
T ss_dssp             HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE--EEEEEEEECC
T ss_pred             ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce--eEeccccccc
Confidence            1 222233444                           45555555555554555444     33333  5555555555


Q ss_pred             ccccCCC--C---CCCccCEEEcccccCcccC-CCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcC
Q 048194          342 LVGFQAP--Y---SIPALRFIDLISNQLRGNI-HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNG  415 (558)
Q Consensus       342 l~~~~~~--~---~~~~L~~L~l~~n~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~  415 (558)
                      + ..+..  .   ...+|+.|++++|.+.... +..+.+|++|++++|.++         +.+|..++.+++|++|++++
T Consensus       288 ~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          288 F-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT---------DTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             C-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC---------TTTTTTCCCCSSCCEEECCS
T ss_pred             e-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC---------hhhhhhhccCCCCCEEEccC
Confidence            5 22110  0   0145777777777766433 256788999999999998         45778889999999999999


Q ss_pred             CcCCc--cCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccC
Q 048194          416 NRPQG--TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK  493 (558)
Q Consensus       416 n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  493 (558)
                      |++++  .+|..+..+++|++|++++|.+++.+|....              ..+++|++|++++|.+++..+..+.  +
T Consensus       358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------------SWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC--------------CCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             CccCccccchHHHhhCCCCCEEECCCCcCCcccccchh--------------ccCccCCEEECcCCCCCcchhhhhc--c
Confidence            99986  5667889999999999999999886665422              1378999999999999887776654  7


Q ss_pred             CCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhh-hcCCCCCCEEeCcCCcCeee
Q 048194          494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ-LASLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       494 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~  556 (558)
                      +|++|++++|+++ .+|..+..+++|+.|++++|+++. +|.. +..+++|++|++++|++++.
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence            9999999999999 899888899999999999999994 6654 88999999999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.9e-44  Score=388.58  Aligned_cols=411  Identities=18%  Similarity=0.232  Sum_probs=341.5

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeC-cCCcCccCCChhc---------------------------------
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNL-SDAGFAGQIPVQI---------------------------------  136 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~p~~l---------------------------------  136 (558)
                      .+++.|+|+++.+.+. +|..++++++|++|+| ++|.+.|..|...                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5789999999999988 9999999999999999 8887766533210                                 


Q ss_pred             ------------------cCCCCCcEEeccc--ccccccccchhhcCCCCccEEEccCCccCc-----------------
Q 048194          137 ------------------SRMARLVALDFSF--NQFSGSISSIRWEHLLNLVCAVLSDNSLDG-----------------  179 (558)
Q Consensus       137 ------------------~~l~~L~~L~L~~--n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------  179 (558)
                                        .....++.+.+..  |.+++ +|. .++++++|++|+|++|.+++                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                              1122344444443  78886 776 69999999999999999997                 


Q ss_pred             cCCcccc--CCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc-CCc-ccChh----
Q 048194          180 SIPRSMF--EFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN-LNG-TVQLD----  251 (558)
Q Consensus       180 ~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~----  251 (558)
                      .+|..++  ++++|++|++++|.+.+.+|..+                   ..+++|++|++++|+ ++| .+|..    
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-------------------~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L  540 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFL-------------------YDLPELQSLNIACNRGISAAQLKADWTRL  540 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-------------------GGCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHH-------------------hCCCCCCEEECcCCCCcccccchHHHHhh
Confidence            3899988  99999999999999999999877                   889999999999998 887 66632    


Q ss_pred             --hhcCCCCCCEEEccCCcccccCCC-cccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194          252 --KILSLGNLAKLDLSYNSLAVDESS-RNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS  328 (558)
Q Consensus       252 --~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  328 (558)
                        .+..+++|++|++++|.+. ..|. ..+..+++|+.|++++|+++.+|.+..+++|+.|++++|.+. .+|..+..+.
T Consensus       541 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~  618 (876)
T 4ecn_A          541 ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT  618 (876)
T ss_dssp             HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEEC
T ss_pred             hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhcc
Confidence              2234569999999999999 6665 138899999999999999999999999999999999999998 7887765543


Q ss_pred             cccceEEEcCCccccccCCCCC---CCccCEEEcccccCcccCCCCC--------CCCcEEEccCCcccccCCCCCccCC
Q 048194          329 VVGLHCLNLSHNFLVGFQAPYS---IPALRFIDLISNQLRGNIHQLP--------NNPIYIDFSNNNFTSSIPADTVNGT  397 (558)
Q Consensus       329 ~~~L~~L~ls~n~l~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~--------~~l~~l~l~~n~~~~~~~~~~~~~~  397 (558)
                      . +|++|++++|.++.++....   .++|+.|++++|++.+.+|..+        .+|+.|++++|.++          .
T Consensus       619 ~-~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~----------~  687 (876)
T 4ecn_A          619 D-QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ----------K  687 (876)
T ss_dssp             T-TCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC----------S
T ss_pred             c-cCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC----------c
Confidence            1 39999999999997665433   3459999999999998776543        37999999999998          5


Q ss_pred             CCCCC-CCCCCCCEEECcCCcCCccCCccccc--------CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhh
Q 048194          398 LPDTF-PRNCLLQTLDLNGNRPQGTVPKSIAK--------CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL  468 (558)
Q Consensus       398 ~p~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~  468 (558)
                      +|..+ ..+++|+.|++++|.+. .+|..+..        +++|+.|++++|.++ .+|..+..             ..+
T Consensus       688 lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------~~l  752 (876)
T 4ecn_A          688 FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------TTL  752 (876)
T ss_dssp             CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------------TTC
T ss_pred             cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------------ccC
Confidence            66554 47889999999999998 56654433        339999999999998 67766540             138


Q ss_pred             ccceEEECCCCcccccCchhhcccCCCCeeeCcC------CcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCC
Q 048194          469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSH------NALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF  542 (558)
Q Consensus       469 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  542 (558)
                      ++|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++
T Consensus       753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~  828 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQ  828 (876)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SS
T ss_pred             CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CC
Confidence            999999999999997 788899999999999976      788889999999999999999999999 68888765  69


Q ss_pred             CCEEeCcCCcCee
Q 048194          543 LSYLNLSYNQLEG  555 (558)
Q Consensus       543 L~~L~l~~n~l~~  555 (558)
                      |+.|+|++|++..
T Consensus       829 L~~LdLs~N~l~~  841 (876)
T 4ecn_A          829 LYILDIADNPNIS  841 (876)
T ss_dssp             SCEEECCSCTTCE
T ss_pred             CCEEECCCCCCCc
Confidence            9999999999864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.2e-41  Score=347.11  Aligned_cols=363  Identities=20%  Similarity=0.221  Sum_probs=186.2

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCC-ChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQI-PVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  169 (558)
                      ++|++|++++|.+.+. .|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..+. .++++++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCE
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCE
Confidence            4566666666666554 4555666666666666666554333 34455566666666666655533233 3555555555


Q ss_pred             EEccCCccCccCCcc--ccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194          170 AVLSDNSLDGSIPRS--MFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT  247 (558)
Q Consensus       170 L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~  247 (558)
                      |++++|.+++..+..  +..+++|++|++++|.+++..|.                                        
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------------------  147 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA----------------------------------------  147 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----------------------------------------
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc----------------------------------------
Confidence            555555554433322  44555555555555555444333                                        


Q ss_pred             cChhhhcCCCCCCEEEccCCcccccCCCcccCCC--CCCCEEecCCCCCCCCCC----------CCCCCCCCEEecCCCc
Q 048194          248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS--PMLELLNLASCKLREIPN----------LKNQSQLQYLYLSENQ  315 (558)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~l~~----------~~~~~~L~~L~l~~n~  315 (558)
                         ..+..+++|++|++++|.+.+..+.. +..+  ..++.+++++|.++.++.          +..+++|++|++++|+
T Consensus       148 ---~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          148 ---SFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             ---GGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             ---cccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence               22444455555555555554433332 2222  456666666666665543          2356789999999999


Q ss_pred             ccccCChhHHhh-ccccceEEEcCCccccccCCCCC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCC
Q 048194          316 ISREIPNWIWRV-SVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADT  393 (558)
Q Consensus       316 l~~~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  393 (558)
                      +.+..|..+... ...+++.|++++|...+...... ++.+.                                      
T Consensus       224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------------------------------  265 (455)
T 3v47_A          224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD--------------------------------------  265 (455)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC--------------------------------------
T ss_pred             ccccchhhhhccccccceeeEeeccccccccccchhhhccCc--------------------------------------
Confidence            988888777654 22347777777776554321100 11000                                      


Q ss_pred             ccCCCCCCCC--CCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194          394 VNGTLPDTFP--RNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF  471 (558)
Q Consensus       394 ~~~~~p~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L  471 (558)
                           +..+.  ..++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..               +++|
T Consensus       266 -----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------l~~L  325 (455)
T 3v47_A          266 -----NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---------------LTHL  325 (455)
T ss_dssp             -----TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT---------------CTTC
T ss_pred             -----ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC---------------cccC
Confidence                 00000  1133444555555444444444444455555555555444444433322               4445


Q ss_pred             eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194          472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN  551 (558)
Q Consensus       472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  551 (558)
                      ++|++++|.+++..+..++.+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            55555555554444444555555555555555555444445555555555555555555433344445555555555555


Q ss_pred             cCeeec
Q 048194          552 QLEGRF  557 (558)
Q Consensus       552 ~l~~~~  557 (558)
                      ++++.+
T Consensus       406 ~l~~~~  411 (455)
T 3v47_A          406 PWDCSC  411 (455)
T ss_dssp             CBCCCT
T ss_pred             CcccCC
Confidence            555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-42  Score=366.84  Aligned_cols=430  Identities=19%  Similarity=0.214  Sum_probs=314.6

Q ss_pred             EEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEe
Q 048194           67 VIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALD  146 (558)
Q Consensus        67 v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  146 (558)
                      .+.++++++++++ +|.  .+.  ++|++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        33 ~~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             CCEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CcEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3788999998885 454  232  7999999999999886 667899999999999999999987888899999999999


Q ss_pred             cccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhh
Q 048194          147 FSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYS  225 (558)
Q Consensus       147 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~  225 (558)
                      +++|.++ .+|..   .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+...                   
T Consensus       107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~-------------------  163 (562)
T 3a79_B          107 VSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL-------------------  163 (562)
T ss_dssp             CTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT-------------------
T ss_pred             CCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch-------------------
Confidence            9999998 67652   78999999999999986 346789999999999999998875322                   


Q ss_pred             cccCCCCCC--CEEEcccccC--CcccChhhhcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC--C--
Q 048194          226 CLGLRTQKL--TPLLLSSNNL--NGTVQLDKILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--E--  296 (558)
Q Consensus       226 ~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~--  296 (558)
                         ..++++  ++|++++|.+  ++..+ ..+..+. ..-.+++++|.+.+..+...+..+++|+.+++++|+..  .  
T Consensus       164 ---~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~  239 (562)
T 3a79_B          164 ---LPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM  239 (562)
T ss_dssp             ---GGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH
T ss_pred             ---hhhhhceeeEEEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH
Confidence               333444  8999998888  54444 3344433 11145666676665554444556667777777766421  1  


Q ss_pred             --CCCCCCCC---------------------------CCCEEecCCCcccccCChhHHhhcccc---ceEEEcCCccccc
Q 048194          297 --IPNLKNQS---------------------------QLQYLYLSENQISREIPNWIWRVSVVG---LHCLNLSHNFLVG  344 (558)
Q Consensus       297 --l~~~~~~~---------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~---L~~L~ls~n~l~~  344 (558)
                        ++.+..++                           +|++|++++|.+.|.+|..+.......   |+.++++.+.+ .
T Consensus       240 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~  318 (562)
T 3a79_B          240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-L  318 (562)
T ss_dssp             HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-S
T ss_pred             HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-e
Confidence              11133334                           455555555555444444431111111   22222222222 1


Q ss_pred             cCCC-----CCCCccCEEEcccccCcccCC-CCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcC
Q 048194          345 FQAP-----YSIPALRFIDLISNQLRGNIH-QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRP  418 (558)
Q Consensus       345 ~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l  418 (558)
                      .+..     ....+|+.|++++|.+..... ..+.+|++|++++|.++         +.+|..++.+++|++|++++|++
T Consensus       319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l  389 (562)
T 3a79_B          319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT---------DSVFQGCSTLKRLQTLILQRNGL  389 (562)
T ss_dssp             SCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC---------TTTTTTCCSCSSCCEEECCSSCC
T ss_pred             cChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc---------cchhhhhcccCCCCEEECCCCCc
Confidence            1000     012458888888888764433 56789999999999998         45778889999999999999999


Q ss_pred             Cc--cCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCC
Q 048194          419 QG--TVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY  496 (558)
Q Consensus       419 ~~--~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  496 (558)
                      ++  .+|..+..+++|++|++++|.+++.+|.....              .+++|++|++++|.+++..+..+.  ++|+
T Consensus       390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~  453 (562)
T 3a79_B          390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--------------WAESILVLNLSSNMLTGSVFRCLP--PKVK  453 (562)
T ss_dssp             CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--------------CCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred             CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--------------CcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence            86  34567899999999999999999867765322              378999999999999876665553  7999


Q ss_pred             eeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhh-hcCCCCCCEEeCcCCcCeeec
Q 048194          497 GLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQ-LASLYFLSYLNLSYNQLEGRF  557 (558)
Q Consensus       497 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  557 (558)
                      +|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++++..
T Consensus       454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            9999999999 78888889999999999999999 46655 899999999999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.7e-41  Score=360.14  Aligned_cols=455  Identities=20%  Similarity=0.199  Sum_probs=335.8

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      ..+++|||++|.+++..+.  .|..+++|++|+|++|.+.+. .+..|.++++|++|+|++|++++..+..|.++++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            4799999999999977766  799999999999999999886 6678999999999999999999766778999999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhh----
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQ----  219 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l----  219 (558)
                      |++++|+++ .++...++++++|++|++++|.+.+ ..|..+..+++|++|++++|++++..+..+.. +..+...    
T Consensus       129 L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~  206 (635)
T 4g8a_A          129 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSL  206 (635)
T ss_dssp             EECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEE
T ss_pred             EECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhh
Confidence            999999999 5544468999999999999999975 46788899999999999999998765544321 1000000    


Q ss_pred             ---------hchhh---------------------hcccCCCCCCCEEEcc-----------------------------
Q 048194          220 ---------IKRVY---------------------SCLGLRTQKLTPLLLS-----------------------------  240 (558)
Q Consensus       220 ---------i~~~~---------------------~~~~~~~~~L~~L~l~-----------------------------  240 (558)
                               ++...                     ......+..++...+.                             
T Consensus       207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l  286 (635)
T 4g8a_A          207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  286 (635)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred             hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence                     00000                     0000112222222111                             


Q ss_pred             -cccCCc--ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCccc
Q 048194          241 -SNNLNG--TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       241 -~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~  317 (558)
                       .+....  ......+..+.+++.+.+.++.+.....   +.....++.|++.+|.+..++. ..+..|+.+++.+|...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC
T ss_pred             hhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC
Confidence             100000  0001223445678888888877654432   4556778888888888776664 34567888888887764


Q ss_pred             ccCChhHHhhccccceEEEcCCccccccCCC----CCCCccCEEEcccccCcccCCC--CCCCCcEEEccCCcccccCCC
Q 048194          318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAP----YSIPALRFIDLISNQLRGNIHQ--LPNNPIYIDFSNNNFTSSIPA  391 (558)
Q Consensus       318 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~L~~L~l~~n~~~~~~~~--~~~~l~~l~l~~n~~~~~~~~  391 (558)
                      ....  ...+  ++|+.+++++|.+......    ..+.+|+.+++..+......+.  ...+++.+++..+.....   
T Consensus       363 ~~~~--~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---  435 (635)
T 4g8a_A          363 NAFS--EVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM---  435 (635)
T ss_dssp             CBCC--CCBC--TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST---
T ss_pred             CCcc--cccc--cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc---
Confidence            3222  2223  3488888888887654322    2367888888888876644333  356788888888776632   


Q ss_pred             CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcc-cCCccccCceeeccccchhhhhhhcc
Q 048194          392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD-KFPCSLYDAPITIKGLDIKLQKILNI  470 (558)
Q Consensus       392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~p~~~~~~~~~~~~~~~~~~~~~~~  470 (558)
                           ..+..+..+.+++.++++.|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..               +++
T Consensus       436 -----~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---------------l~~  495 (635)
T 4g8a_A          436 -----SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------LRN  495 (635)
T ss_dssp             -----TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------CTT
T ss_pred             -----ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh---------------ccc
Confidence                 123456778889999999999988888888889999999999987543 45555433               788


Q ss_pred             ceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCC-CCCCEEeCc
Q 048194          471 FTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASL-YFLSYLNLS  549 (558)
Q Consensus       471 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~  549 (558)
                      |++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|+.|||++|++++..|..+..+ ++|++|+++
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            9999999999998888899999999999999999998888889999999999999999998888888887 689999999


Q ss_pred             CCcCee
Q 048194          550 YNQLEG  555 (558)
Q Consensus       550 ~n~l~~  555 (558)
                      +|+++-
T Consensus       576 ~Np~~C  581 (635)
T 4g8a_A          576 QNDFAC  581 (635)
T ss_dssp             TCCBCC
T ss_pred             CCCCcc
Confidence            998863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.1e-42  Score=362.66  Aligned_cols=436  Identities=20%  Similarity=0.175  Sum_probs=331.0

Q ss_pred             CCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCC
Q 048194           53 CCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQI  132 (558)
Q Consensus        53 ~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  132 (558)
                      .|.|.++ |+         .+++.++ .+|.  .+  .++|++|++++|.+.+. .|..|.++++|++|++++|.+++..
T Consensus         3 ~C~~~~~-c~---------~~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~   66 (549)
T 2z81_A            3 SCDASGV-CD---------GRSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIE   66 (549)
T ss_dssp             EECTTSE-EE---------CTTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEEC
T ss_pred             cCCCCce-EE---------CCCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccC
Confidence            4888887 73         4555665 3444  23  27999999999999886 6788999999999999999999888


Q ss_pred             ChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCc-cCCccccCCCCCCEEeCccccCCCCCC-cccc
Q 048194          133 PVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG-SIPRSMFEFPMLQQLQLANNQFGGSIP-RFSN  210 (558)
Q Consensus       133 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~  210 (558)
                      |..|+++++|++|++++|.+++..+. .++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+ 
T Consensus        67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-  144 (549)
T 2z81_A           67 GDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-  144 (549)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-
T ss_pred             hhhccccccCCEEECCCCccCccCHH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-
Confidence            88999999999999999999954444 58999999999999999986 357789999999999999998655555 344 


Q ss_pred             ccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecC
Q 048194          211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA  290 (558)
Q Consensus       211 ~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  290 (558)
                                        ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+... +...+..+++|+.|+++
T Consensus       145 ------------------~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~  204 (549)
T 2z81_A          145 ------------------AGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELR  204 (549)
T ss_dssp             ------------------TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEE
T ss_pred             ------------------hcccccCeeeccCCcccccCh-hhhhccccCceEecccCccccc-chhhHhhcccccEEEcc
Confidence                              788999999999999986555 6788999999999999987633 33324568999999999


Q ss_pred             CCCCCCCC---C--CCCCCCCCEEecCCCcccccCChhHHhh--ccccceEEEcCCccccccCCC--------CCC----
Q 048194          291 SCKLREIP---N--LKNQSQLQYLYLSENQISREIPNWIWRV--SVVGLHCLNLSHNFLVGFQAP--------YSI----  351 (558)
Q Consensus       291 ~n~l~~l~---~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~--------~~~----  351 (558)
                      +|+++.++   .  ...+++|+.|++++|.+.+..+..+...  ...+++.+++++|.+.+....        ..+    
T Consensus       205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~  284 (549)
T 2z81_A          205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE  284 (549)
T ss_dssp             SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred             CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence            99998753   2  4568899999999999877655544322  123488888888877654211        112    


Q ss_pred             -------------------------CccCEEEcccccCcccCCC----CCCCCcEEEccCCcccccCCCCCccCCCCCCC
Q 048194          352 -------------------------PALRFIDLISNQLRGNIHQ----LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTF  402 (558)
Q Consensus       352 -------------------------~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~  402 (558)
                                               ++|+.+++++|++. .+|.    .+.+|++|++++|.+++.+|.      .+..+
T Consensus       285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~  357 (549)
T 2z81_A          285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK------NSACK  357 (549)
T ss_dssp             EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH------HHTCT
T ss_pred             cccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc------chhhh
Confidence                                     45666666666654 3332    256788888888877743210      02345


Q ss_pred             CCCCCCCEEECcCCcCCccCC--cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc
Q 048194          403 PRNCLLQTLDLNGNRPQGTVP--KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN  480 (558)
Q Consensus       403 ~~~~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  480 (558)
                      +.+++|++|++++|++++..+  ..+..+++|++|++++|.++ .+|..+..               +++|++|++++|.
T Consensus       358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------~~~L~~L~Ls~N~  421 (549)
T 2z81_A          358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW---------------PEKMRFLNLSSTG  421 (549)
T ss_dssp             TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC---------------CTTCCEEECTTSC
T ss_pred             hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc---------------cccccEEECCCCC
Confidence            667778888888888875432  45777888888888888887 45655433               6788888888888


Q ss_pred             ccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          481 FKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       481 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                      ++.. +..+  .++|++|++++|++++..    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|
T Consensus       422 l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          422 IRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             cccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence            8743 3332  368888888888888532    47899999999999998 5776 4678999999999999998653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=354.68  Aligned_cols=400  Identities=22%  Similarity=0.190  Sum_probs=309.1

Q ss_pred             CEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEcc
Q 048194           94 RSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS  173 (558)
Q Consensus        94 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  173 (558)
                      ++|++++|.++.  +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|. .++++++|++|+++
T Consensus         3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECC
T ss_pred             ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecC
Confidence            579999999986  676665  8999999999999977778999999999999999999955455 68999999999999


Q ss_pred             CCccCccCCccccCCCCCCEEeCccccCCC-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhh
Q 048194          174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGG-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK  252 (558)
Q Consensus       174 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  252 (558)
                      +|.++ .+|..  .+++|++|++++|.+++ .+|..+                   ..+++|++|++++|.+++    ..
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-------------------~~l~~L~~L~L~~n~l~~----~~  131 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF-------------------GNMSQLKFLGLSTTHLEK----SS  131 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGG-------------------GGCTTCCEEEEEESSCCG----GG
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhhh-------------------ccCCcceEEEecCcccch----hh
Confidence            99998 56766  89999999999999987 466666                   889999999999999874    34


Q ss_pred             hcCCCCC--CEEEccCCcc--cccCCCcccCCCC-CCCEEecCCCCCC-CCCC--CCCCCCCCEEecCCCc-------cc
Q 048194          253 ILSLGNL--AKLDLSYNSL--AVDESSRNYSFSP-MLELLNLASCKLR-EIPN--LKNQSQLQYLYLSENQ-------IS  317 (558)
Q Consensus       253 ~~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~-~L~~L~l~~n~l~-~l~~--~~~~~~L~~L~l~~n~-------l~  317 (558)
                      +..+++|  ++|++++|.+  .+..+.. +..+. ....+++++|.+. .++.  +..+++|+.+++++|.       +.
T Consensus       132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  210 (520)
T 2z7x_B          132 VLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL  210 (520)
T ss_dssp             GGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred             ccccccceeeEEEeeccccccccccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence            6677778  9999999999  6555554 44443 3446788888766 5555  7889999999999986       44


Q ss_pred             ccCChhHHhhcc-------------------------ccceEEEcCCccccccCCC-C-----C-CCccCEEEcccccCc
Q 048194          318 REIPNWIWRVSV-------------------------VGLHCLNLSHNFLVGFQAP-Y-----S-IPALRFIDLISNQLR  365 (558)
Q Consensus       318 ~~~~~~~~~~~~-------------------------~~L~~L~ls~n~l~~~~~~-~-----~-~~~L~~L~l~~n~~~  365 (558)
                      +.++ .+..+..                         ++|++|++++|.+++..+. .     . ++.|+.+++++|.+ 
T Consensus       211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-  288 (520)
T 2z7x_B          211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-  288 (520)
T ss_dssp             HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred             cchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence            3333 3333332                         1355555555554432221 1     2 45555555555544 


Q ss_pred             ccCCCC-------CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECC
Q 048194          366 GNIHQL-------PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLG  438 (558)
Q Consensus       366 ~~~~~~-------~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  438 (558)
                       .+|..       -.+++.|++++|.+.+          ++ ....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus       289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~----------~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVH----------ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ  356 (520)
T ss_dssp             -CSCTHHHHHHHHTCCCSEEEEESSCCCC----------CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred             -ecchhhhhcccccCceeEEEcCCCcccc----------cc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence             22210       0346777777776652          11 12578889999999999998899999999999999999


Q ss_pred             CCcCcc--cCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch-hhcccCCCCeeeCcCCcCcccccccccC
Q 048194          439 NNQFSD--KFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE-DVGLLKSLYGLNLSHNALTGSIPSSFGN  515 (558)
Q Consensus       439 ~n~i~~--~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~  515 (558)
                      +|.+++  .+|..               +..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. 
T Consensus       357 ~N~l~~l~~~~~~---------------~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-  420 (520)
T 2z7x_B          357 MNQLKELSKIAEM---------------TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-  420 (520)
T ss_dssp             SSCCCBHHHHHHH---------------HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred             CCccCccccchHH---------------HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence            999985  33333               34489999999999999985555 488899999999999999988887765 


Q ss_pred             CCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          516 LKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       516 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                       ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|
T Consensus       421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~  460 (520)
T 2z7x_B          421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP  460 (520)
T ss_dssp             -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred             -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence             79999999999998 788888899999999999999984 44

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.4e-40  Score=337.64  Aligned_cols=392  Identities=20%  Similarity=0.274  Sum_probs=230.7

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCC-------------CCEEeCcCCcCccC
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISS-------------LTYLNLSDAGFAGQ  131 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~  131 (558)
                      .++++++++++.+ +.+|.  .++.+++|++|++++|.+.+. +|..++++.+             +++|++++|.+++ 
T Consensus        11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-   85 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-   85 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred             ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence            5677788888877 66776  678888888888888777766 7777777665             4788888888773 


Q ss_pred             CChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccc
Q 048194          132 IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNA  211 (558)
Q Consensus       132 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  211 (558)
                      +|..   .++|++|++++|.+++ +|.    ..++|++|++++|.+++ ++..   .++|++|++++|.+++ +|. +  
T Consensus        86 lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~-~--  149 (454)
T 1jl5_A           86 LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE-L--  149 (454)
T ss_dssp             CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC-C--
T ss_pred             CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc-c--
Confidence            4442   3678888888888774 543    23678888888887763 3321   1578888888887775 553 3  


Q ss_pred             cccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCC
Q 048194          212 SSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS  291 (558)
Q Consensus       212 ~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~  291 (558)
                                       ..+++|++|++++|++++ +|.    ..++|++|++++|.+++. + . +..+++|+.|++++
T Consensus       150 -----------------~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~-~-~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          150 -----------------QNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P-E-LQNLPFLTAIYADN  204 (454)
T ss_dssp             -----------------TTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C-C-CTTCTTCCEEECCS
T ss_pred             -----------------CCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c-c-ccCCCCCCEEECCC
Confidence                             777788888888887773 442    235788888888877753 3 3 67778888888888


Q ss_pred             CCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCC
Q 048194          292 CKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQL  371 (558)
Q Consensus       292 n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  371 (558)
                      |+++.+|...  ++|++|++++|.+. .+|. +..++.  |++|++++|.+++++.  .+++|+.|++++|++.+ +|..
T Consensus       205 N~l~~l~~~~--~~L~~L~l~~n~l~-~lp~-~~~l~~--L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~-l~~~  275 (454)
T 1jl5_A          205 NSLKKLPDLP--LSLESIVAGNNILE-ELPE-LQNLPF--LTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD-LPEL  275 (454)
T ss_dssp             SCCSSCCCCC--TTCCEEECCSSCCS-SCCC-CTTCTT--CCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSC-CCCC
T ss_pred             CcCCcCCCCc--CcccEEECcCCcCC-cccc-cCCCCC--CCEEECCCCcCCcccc--cccccCEEECCCCcccc-cCcc
Confidence            8887777632  47888888888776 5563 554444  8888888887776543  24678888888887775 5666


Q ss_pred             CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccC-CCCCEEECCCCcCcccCCccc
Q 048194          372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC-KMLEVLNLGNNQFSDKFPCSL  450 (558)
Q Consensus       372 ~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~~p~~~  450 (558)
                      +.+++++++++|.+++          +|..   .++|++|++++|.+++ ++    .+ ++|++|++++|.+++ +|.. 
T Consensus       276 ~~~L~~L~ls~N~l~~----------l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-  335 (454)
T 1jl5_A          276 PQSLTFLDVSENIFSG----------LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-  335 (454)
T ss_dssp             CTTCCEEECCSSCCSE----------ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC-
T ss_pred             cCcCCEEECcCCccCc----------ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc-
Confidence            6778888888887773          2211   1467888888887774 22    23 478888888888775 4432 


Q ss_pred             cCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc--cccccccCC------------
Q 048194          451 YDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG--SIPSSFGNL------------  516 (558)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l------------  516 (558)
                                       +++|++|++++|.++. +|.   .+++|++|++++|++++  .+|.++..+            
T Consensus       336 -----------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~  394 (454)
T 1jl5_A          336 -----------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL  394 (454)
T ss_dssp             -----------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred             -----------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence                             4678888888888874 443   46788888888888877  677777766            


Q ss_pred             -CCCCeecCCCCcCcc--cchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          517 -KRLESLDLSMNNLSR--AIPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       517 -~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                       ++|+.|++++|++++  .+|.      +++.|.+.+|.+.+++|
T Consensus       395 ~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          395 PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE  433 (454)
T ss_dssp             ---------------------------------------------
T ss_pred             cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence             677888888887775  3443      45566677777776653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.8e-39  Score=349.44  Aligned_cols=416  Identities=20%  Similarity=0.188  Sum_probs=300.9

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      +++++|+|++|.++.. .+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|+++ .++...|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            4799999999999886 5678999999999999999999777788999999999999999998 5544468999999999


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCCC-CCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGS-IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ  249 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  249 (558)
                      ++++|.+++..+..++++++|++|++++|.+++. .|..+                   ..+++|++|++++|++++ ++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-------------------~~l~~L~~L~L~~N~l~~-~~  189 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQS-IY  189 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-------------------GGCTTCCEEECCSSCCCE-EC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-------------------ccchhhhhhcccCccccc-cc
Confidence            9999999977677799999999999999999753 45554                   778899999999999874 44


Q ss_pred             hhhhcCCCC----CCEEEccCCcccccCCCcc-----------------------cCCCC--------------------
Q 048194          250 LDKILSLGN----LAKLDLSYNSLAVDESSRN-----------------------YSFSP--------------------  282 (558)
Q Consensus       250 ~~~~~~l~~----L~~L~l~~n~l~~~~~~~~-----------------------~~~~~--------------------  282 (558)
                      ...+..+.+    ...++++.|.+....+...                       +..+.                    
T Consensus       190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            344443332    2356666665543222110                       00111                    


Q ss_pred             -------------------------------------CCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHH
Q 048194          283 -------------------------------------MLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW  325 (558)
Q Consensus       283 -------------------------------------~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~  325 (558)
                                                           +++.+.+.++.+..++.+.....++.|++.+|.+.+..+..  
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--  347 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK--  347 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB--
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc--
Confidence                                                 12222222222222222223334444444444433221111  


Q ss_pred             hhccccceEEEcCCccccccCCCCCCCccCEEEcccccCccc--CCC---CCCCCcEEEccCCcccccCCCCCccCCCCC
Q 048194          326 RVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGN--IHQ---LPNNPIYIDFSNNNFTSSIPADTVNGTLPD  400 (558)
Q Consensus       326 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~--~~~---~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~  400 (558)
                         ...++.+++..|..........+++|+.++++.|.+...  .+.   ...+++++++..+...          .++.
T Consensus       348 ---l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~----------~~~~  414 (635)
T 4g8a_A          348 ---LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI----------TMSS  414 (635)
T ss_dssp             ---CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE----------EECS
T ss_pred             ---chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc----------cccc
Confidence               112455555555544444434466677777776666422  111   2346667777666655          4556


Q ss_pred             CCCCCCCCCEEECcCCcCCccC-CcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          401 TFPRNCLLQTLDLNGNRPQGTV-PKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       401 ~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      .+..+++|+.+++..+...... +..+..+++++.+++++|.+.+..|..+..               ++.++.|++++|
T Consensus       415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~---------------~~~L~~L~Ls~N  479 (635)
T 4g8a_A          415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------LSSLEVLKMAGN  479 (635)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------CTTCCEEECTTC
T ss_pred             cccccccccchhhhhcccccccccccccccccccccccccccccccccccccc---------------chhhhhhhhhhc
Confidence            6778888999999888776543 356778899999999999988777766543               889999999999


Q ss_pred             ccc-ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          480 NFK-GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       480 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                      .+. +..|..|..+++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..|.++++|++|++++|+|++..|
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            854 4567889999999999999999998889999999999999999999998888999999999999999999998654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-39  Score=336.32  Aligned_cols=371  Identities=20%  Similarity=0.166  Sum_probs=259.8

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+.+..+.  .+..+++|++|++++|.+.+...+..|.++++|++|++++|.+++..|..|+++++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            5799999999999987777  79999999999999999876524678999999999999999999888999999999999


Q ss_pred             Eecccccccccc-cchhhcCCCCccEEEccCCccCccCCcc-ccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194          145 LDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRS-MFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR  222 (558)
Q Consensus       145 L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~  222 (558)
                      |++++|.+++.+ +...+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..           
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----------  176 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN-----------  176 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG-----------
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc-----------
Confidence            999999998655 3224889999999999999999877876 789999999999999999877765410           


Q ss_pred             hhhcccCCCCCCCEEEcccccCCcccChhh--------hcCCCCCCEEEccCCcccccCCCccc--CCCCCCCEEecCCC
Q 048194          223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDK--------ILSLGNLAKLDLSYNSLAVDESSRNY--SFSPMLELLNLASC  292 (558)
Q Consensus       223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~l~~n  292 (558)
                            ....+++.|++++|.+.+ ++...        +..+++|++|++++|.+.+..+....  ...++|+.|++++|
T Consensus       177 ------l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          177 ------FQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             ------GTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ------cccccccccccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence                  122678899999988873 32221        22445677777777766554433211  11244555555554


Q ss_pred             CCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCC
Q 048194          293 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLP  372 (558)
Q Consensus       293 ~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  372 (558)
                      .......            ..+.+.+..+..+..+.                      .++|+.+++++|.+.       
T Consensus       250 ~~~~~~~------------~~~~~~~~~~~~~~~~~----------------------~~~L~~L~l~~n~l~-------  288 (455)
T 3v47_A          250 YNMGSSF------------GHTNFKDPDNFTFKGLE----------------------ASGVKTCDLSKSKIF-------  288 (455)
T ss_dssp             TTTSCCT------------TCCSSCCCCTTTTGGGT----------------------TSCCCEEECCSSCCC-------
T ss_pred             ccccccc------------chhhhccCccccccccc----------------------ccCceEEEecCcccc-------
Confidence            3321110            00111111111111111                      234455555554444       


Q ss_pred             CCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccC
Q 048194          373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD  452 (558)
Q Consensus       373 ~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~  452 (558)
                                             +..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..
T Consensus       289 -----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          289 -----------------------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             -----------------------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             -----------------------ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence                                   234555666677777777777777666667777777777777777776555544433


Q ss_pred             ceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194          453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA  532 (558)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  532 (558)
                                     +++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       346 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          346 ---------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             ---------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ---------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence                           67777777777777776677777788888888888888765555667778888888888887766


Q ss_pred             ch
Q 048194          533 IP  534 (558)
Q Consensus       533 ~~  534 (558)
                      .|
T Consensus       411 ~~  412 (455)
T 3v47_A          411 CP  412 (455)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-39  Score=332.65  Aligned_cols=378  Identities=22%  Similarity=0.260  Sum_probs=276.3

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCC-------------cEEecccccccc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARL-------------VALDFSFNQFSG  154 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~~~~  154 (558)
                      ...++|++|++++|.+ +. +|..++++++|++|++++|.+.+.+|..++++++|             ++|++++|.++ 
T Consensus         8 ~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-   84 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-   84 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-
T ss_pred             cccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-
Confidence            3468999999999999 55 89999999999999999999999999999988764             99999999998 


Q ss_pred             cccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCC
Q 048194          155 SISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL  234 (558)
Q Consensus       155 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L  234 (558)
                      .+|.    -.++|++|++++|.+++ +|..   +++|++|++++|.+++ ++.                      ..++|
T Consensus        85 ~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----------------------~~~~L  133 (454)
T 1jl5_A           85 SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----------------------LPPLL  133 (454)
T ss_dssp             CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----------------------CCTTC
T ss_pred             cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----------------------CCCCC
Confidence            4543    13789999999999986 6653   4889999999999874 332                      22689


Q ss_pred             CEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCC
Q 048194          235 TPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN  314 (558)
Q Consensus       235 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n  314 (558)
                      ++|++++|.+++ +|  .+..+++|++|++++|++++ .+..    .++|++|++++|+++.+|.+..+++|++|++++|
T Consensus       134 ~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          134 EYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             CEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            999999999984 76  48999999999999999985 3322    3599999999999999999999999999999999


Q ss_pred             cccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCc
Q 048194          315 QISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTV  394 (558)
Q Consensus       315 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  394 (558)
                      .+.+ +|...     .+|++|++++|.++.++....+++|+.|++++|++++ +|..+.++++|++++|.++        
T Consensus       206 ~l~~-l~~~~-----~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~--------  270 (454)
T 1jl5_A          206 SLKK-LPDLP-----LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT--------  270 (454)
T ss_dssp             CCSS-CCCCC-----TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCS--------
T ss_pred             cCCc-CCCCc-----CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCccc--------
Confidence            9975 44432     2599999999999977654559999999999999986 6667789999999999998        


Q ss_pred             cCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEE
Q 048194          395 NGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI  474 (558)
Q Consensus       395 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L  474 (558)
                        .+|..   +++|++|++++|.+++. +..   .++|+.|++++|.+++. +.                  ..++|++|
T Consensus       271 --~l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~------------------~~~~L~~L  322 (454)
T 1jl5_A          271 --DLPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD------------------LPPSLEEL  322 (454)
T ss_dssp             --CCCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC------------------CCTTCCEE
T ss_pred             --ccCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC------------------CcCcCCEE
Confidence              34543   36799999999999862 211   26899999999998752 21                  13689999


Q ss_pred             ECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc--cchhhhcCC------------
Q 048194          475 DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR--AIPSQLASL------------  540 (558)
Q Consensus       475 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l------------  540 (558)
                      ++++|.+++ +|..   +++|++|++++|+++ .+|.   .+++|+.|++++|++++  .+|..+..+            
T Consensus       323 ~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~  394 (454)
T 1jl5_A          323 NVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL  394 (454)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred             ECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence            999999996 4443   689999999999999 5776   47899999999999998  788888877            


Q ss_pred             -CCCCEEeCcCCcCee--ecC
Q 048194          541 -YFLSYLNLSYNQLEG--RFQ  558 (558)
Q Consensus       541 -~~L~~L~l~~n~l~~--~~~  558 (558)
                       ++|++|++++|+++|  .||
T Consensus       395 ~~~L~~L~ls~N~l~~~~~iP  415 (454)
T 1jl5_A          395 PQNLKQLHVETNPLREFPDIP  415 (454)
T ss_dssp             ---------------------
T ss_pred             cCcCCEEECCCCcCCccccch
Confidence             889999999999998  665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.3e-39  Score=339.30  Aligned_cols=430  Identities=19%  Similarity=0.182  Sum_probs=325.3

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      +++++|++++|.+.+..+.  .+..+++|++|++++|.+.+. .|..|.++++|++|++++|.++ .+|..  .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            6899999999999877766  799999999999999999886 7888999999999999999998 67766  8999999


Q ss_pred             Eecccccccccc-cchhhcCCCCccEEEccCCccCccCCccccCCCCC--CEEeCccccC--CCCCCccccccc-cchhh
Q 048194          145 LDFSFNQFSGSI-SSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPML--QQLQLANNQF--GGSIPRFSNASS-SALDT  218 (558)
Q Consensus       145 L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~~~~~~-~~l~~  218 (558)
                      |++++|.+++.. |. .++++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+..-. ..+..
T Consensus       126 L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l  201 (562)
T 3a79_B          126 LDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL  201 (562)
T ss_dssp             EECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred             EECCCCCccccCchH-hhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence            999999998532 34 689999999999999999853   34455555  9999999999  777665542100 00000


Q ss_pred             h-----hch-hhhcccCCCCCCCEEEcccccC-----CcccChhhhcCCCCCCEEEccCCcccccCCCcc--cCCCCCCC
Q 048194          219 Q-----IKR-VYSCLGLRTQKLTPLLLSSNNL-----NGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN--YSFSPMLE  285 (558)
Q Consensus       219 l-----i~~-~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~  285 (558)
                      .     +.. ........+++|+.+++++|..     .+.+  ..+..+++|+.+++.++.+.+......  ....++|+
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence            0     000 0000113455666677666531     1111  235566677777776665543211110  11235899


Q ss_pred             EEecCCCCCC-CCCC-C-----CCCCCCCEEecCCCcccccCC-hhHHhh-ccccceEEEcCCccccccCCCCCCCccCE
Q 048194          286 LLNLASCKLR-EIPN-L-----KNQSQLQYLYLSENQISREIP-NWIWRV-SVVGLHCLNLSHNFLVGFQAPYSIPALRF  356 (558)
Q Consensus       286 ~L~l~~n~l~-~l~~-~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~L~~  356 (558)
                      +|++++|.++ .+|. +     ..++.|+.++++.+.+  .+| .++... ...++++|++++|.+........+++|++
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~  357 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF  357 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred             EEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence            9999999998 8887 4     5666666667777766  455 333322 23459999999999977665456899999


Q ss_pred             EEcccccCcccCCCC---CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc-ccccCCCC
Q 048194          357 IDLISNQLRGNIHQL---PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK-SIAKCKML  432 (558)
Q Consensus       357 L~l~~n~~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L  432 (558)
                      |++++|++++.+|..   .++|++|++++|.+++.       ..+|..+..+++|++|++++|.+++.+|. .+..+++|
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-------FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT-------THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCc-------ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            999999999876654   56899999999999831       13446788999999999999999985554 58889999


Q ss_pred             CEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccc
Q 048194          433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS  512 (558)
Q Consensus       433 ~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  512 (558)
                      ++|++++|.+++..|..+                 .++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus       431 ~~L~l~~n~l~~~~~~~l-----------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCL-----------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             CEEECCSSCCCGGGGSSC-----------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred             CEEECCCCCCCcchhhhh-----------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence            999999999988766553                 368999999999999 56777779999999999999999 56665


Q ss_pred             -ccCCCCCCeecCCCCcCcccch
Q 048194          513 -FGNLKRLESLDLSMNNLSRAIP  534 (558)
Q Consensus       513 -l~~l~~L~~L~L~~N~l~~~~~  534 (558)
                       +..+++|+.|++++|++.+..+
T Consensus       492 ~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             STTTCTTCCCEECCSCCBCCCHH
T ss_pred             HHhcCCCCCEEEecCCCcCCCcc
Confidence             9999999999999999987554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-39  Score=315.67  Aligned_cols=290  Identities=31%  Similarity=0.473  Sum_probs=227.9

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCC--ccceEeCCC---CCEEEEEcCCCCccc--cccCcccccCC
Q 048194           18 QCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCD--WSGVDCDEA---GHVIGLDLSTESISG--GIENAAILFSL   90 (558)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~---~~v~~L~l~~~~~~~--~~~~~~~~~~l   90 (558)
                      .|.++|++||++||+++.++ .   .+.+|..+.|||.  |.||.|...   ++|++|+++++.+.+  ..+.  .+..+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~-~---~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l   75 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNP-T---TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-G---GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGC
T ss_pred             CCCHHHHHHHHHHHHhcCCc-c---cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCC
Confidence            58999999999999999643 3   6889988889998  999999864   799999999999988  7777  79999


Q ss_pred             CCCCEEECCC-CCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194           91 HYLRSLNLAR-TSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        91 ~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  169 (558)
                      ++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|. .+..+++|++
T Consensus        76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~  153 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCE
T ss_pred             CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCe
Confidence            9999999995 888877 888999999999999999999988999999999999999999999877766 5888999999


Q ss_pred             EEccCCccCccCCccccCCC-CCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194          170 AVLSDNSLDGSIPRSMFEFP-MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV  248 (558)
Q Consensus       170 L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~  248 (558)
                      |++++|.+++.+|..+..++ +|++|++++|++++.+|..+                   ..++ |++|++++|.+++. 
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-------------------~~l~-L~~L~Ls~N~l~~~-  212 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-------------------ANLN-LAFVDLSRNMLEGD-  212 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-------------------GGCC-CSEEECCSSEEEEC-
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-------------------hCCc-ccEEECcCCcccCc-
Confidence            99999999888898898887 89999999999888777765                   5555 88888888888744 


Q ss_pred             ChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHh
Q 048194          249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWR  326 (558)
Q Consensus       249 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~  326 (558)
                      ....+..+++|++|++++|.+.+..+.  +..+++|++|++++|+++ .+|. +..+++|++|++++|++++.+|.. ..
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            346677788888888888877654433  445566666666666665 4554 555666666666666665555543 22


Q ss_pred             hccccceEEEcCCcc
Q 048194          327 VSVVGLHCLNLSHNF  341 (558)
Q Consensus       327 ~~~~~L~~L~ls~n~  341 (558)
                      ++.  |+.+++++|.
T Consensus       290 l~~--L~~l~l~~N~  302 (313)
T 1ogq_A          290 LQR--FDVSAYANNK  302 (313)
T ss_dssp             GGG--SCGGGTCSSS
T ss_pred             ccc--cChHHhcCCC
Confidence            222  4444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-37  Score=318.84  Aligned_cols=355  Identities=18%  Similarity=0.199  Sum_probs=211.0

Q ss_pred             cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCC
Q 048194           86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL  165 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  165 (558)
                      .+..+++|++|++++|.+.+  +| .++.+++|++|++++|.+++ +|  ++.+++|++|++++|.+++ ++   +++++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD---VTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence            45566677777777776665  33 46667777777777777664 33  6666777777777776663 22   56667


Q ss_pred             CccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCC
Q 048194          166 NLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN  245 (558)
Q Consensus       166 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~  245 (558)
                      +|++|++++|.+++ ++  +..+++|++|++++|++++. +  +                   ..+++|++|++++|...
T Consensus       107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l-------------------~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--V-------------------SHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--C-------------------TTCTTCCEEECTTCSCC
T ss_pred             cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--c-------------------ccCCcCCEEECCCCCcc
Confidence            77777777776664 33  66667777777777766643 2  2                   55666777777776544


Q ss_pred             cccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHH
Q 048194          246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW  325 (558)
Q Consensus       246 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~  325 (558)
                      +.++   +..+++|++|++++|++++..    +..+++|+.|++++|+++.++ +..+++|++|++++|++++ +|  +.
T Consensus       162 ~~~~---~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~-ip--~~  230 (457)
T 3bz5_A          162 TKLD---VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTE-ID--VT  230 (457)
T ss_dssp             CCCC---CTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred             cccc---cccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccc-cC--cc
Confidence            4442   456667777777777666532    555666777777777766653 6666777777777777664 44  33


Q ss_pred             hhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCC
Q 048194          326 RVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN  405 (558)
Q Consensus       326 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~  405 (558)
                      .++.  |++|++++|.+++.+ ...+++|+.|++++|.           ++.+++++|.+.+         .+|  ++.+
T Consensus       231 ~l~~--L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~-----------L~~L~l~~n~~~~---------~~~--~~~l  285 (457)
T 3bz5_A          231 PLTQ--LTYFDCSVNPLTELD-VSTLSKLTTLHCIQTD-----------LLEIDLTHNTQLI---------YFQ--AEGC  285 (457)
T ss_dssp             TCTT--CSEEECCSSCCSCCC-CTTCTTCCEEECTTCC-----------CSCCCCTTCTTCC---------EEE--CTTC
T ss_pred             ccCC--CCEEEeeCCcCCCcC-HHHCCCCCEEeccCCC-----------CCEEECCCCccCC---------ccc--cccc
Confidence            3333  666666666666643 2336667777666653           3456666666553         333  2455


Q ss_pred             CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC
Q 048194          406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI  485 (558)
Q Consensus       406 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  485 (558)
                      ++|+.|++++|...+.+|.   ..++|+.|++++                            .++|++|++++|++++. 
T Consensus       286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~----------------------------~~~L~~L~L~~N~l~~l-  333 (457)
T 3bz5_A          286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQ----------------------------NPKLVYLYLNNTELTEL-  333 (457)
T ss_dssp             TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT----------------------------CTTCCEEECTTCCCSCC-
T ss_pred             ccCCEEECCCCcccceecc---CCCcceEechhh----------------------------cccCCEEECCCCccccc-
Confidence            6677777777766555543   223344443333                            24456666666666653 


Q ss_pred             chhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          486 LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       486 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                        .++.+++|+.|++++|++++        ++.|+.|++++|.+.|.     ..+..|..+++++|+++|.||
T Consensus       334 --~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          334 --DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             --CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred             --ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence              25556666666666666653        23445555555555543     233445555566666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.6e-37  Score=315.23  Aligned_cols=347  Identities=22%  Similarity=0.297  Sum_probs=255.8

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL  167 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  167 (558)
                      ..+++++.|+++++.+..  +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+. .++.  ++++++|
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L  114 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP--LANLTNL  114 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred             hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh--hcCCCCC
Confidence            456789999999888876  44 478889999999999998844 44 888999999999999888 3432  7888899


Q ss_pred             cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194          168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT  247 (558)
Q Consensus       168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~  247 (558)
                      ++|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +                   ..+++|++|+++ +.+.+.
T Consensus       115 ~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~-~-------------------~~l~~L~~L~l~-~~~~~~  170 (466)
T 1o6v_A          115 TGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISA-L-------------------SGLTSLQQLSFG-NQVTDL  170 (466)
T ss_dssp             CEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGG-G-------------------TTCTTCSEEEEE-ESCCCC
T ss_pred             CEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Chh-h-------------------ccCCcccEeecC-CcccCc
Confidence            9999998888754 33 7888889999998888774 332 2                   777888888886 344322


Q ss_pred             cChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhh
Q 048194          248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV  327 (558)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  327 (558)
                         ..+..+++|++|++++|.+.+..  . +..+++|+.|++++|.++.++.+..+++|++|++++|.+.+.  ..+..+
T Consensus       171 ---~~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l  242 (466)
T 1o6v_A          171 ---KPLANLTTLERLDISSNKVSDIS--V-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL  242 (466)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ---hhhccCCCCCEEECcCCcCCCCh--h-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcC
Confidence               23677788888888888776432  1 566777777777777777666566677777777777776532  234333


Q ss_pred             ccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194          328 SVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL  407 (558)
Q Consensus       328 ~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~  407 (558)
                      +.  |++|++++|.+.+..+...+++|+.|++++|.+                     +          .++. +..+++
T Consensus       243 ~~--L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l---------------------~----------~~~~-~~~l~~  288 (466)
T 1o6v_A          243 TN--LTDLDLANNQISNLAPLSGLTKLTELKLGANQI---------------------S----------NISP-LAGLTA  288 (466)
T ss_dssp             TT--CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC---------------------C----------CCGG-GTTCTT
T ss_pred             CC--CCEEECCCCccccchhhhcCCCCCEEECCCCcc---------------------C----------cccc-ccCCCc
Confidence            33  666666666666554433355555555555544                     3          2233 667888


Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      |+.|++++|.+.+..+  +..+++|+.|++++|.+++..|  +               ..+++|++|++++|.+++.  .
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---------------~~l~~L~~L~l~~n~l~~~--~  347 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V---------------SSLTKLQRLFFYNNKVSDV--S  347 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G---------------GGCTTCCEEECCSSCCCCC--G
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h---------------ccCccCCEeECCCCccCCc--h
Confidence            9999999999986544  7889999999999999886544  2               2388999999999998874  5


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      .++.+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            78889999999999999987766  7889999999999998876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.9e-36  Score=311.30  Aligned_cols=366  Identities=23%  Similarity=0.274  Sum_probs=298.7

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+.. ++   .+..+++|++|++++|.+.+.  +. +.++++|++|++++|.+.+. +. ++++++|++
T Consensus        46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~  116 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTG  116 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred             ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCE
Confidence            679999999998864 33   478899999999999999885  44 99999999999999999854 44 999999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY  224 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~  224 (558)
                      |++++|.++ .++.  +.++++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+.. . +               
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~-~-~---------------  173 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK-P-L---------------  173 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG-G-G---------------
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch-h-h---------------
Confidence            999999998 4543  7899999999999999985 44 58899999999996 4444332 2 2               


Q ss_pred             hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCC
Q 048194          225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS  304 (558)
Q Consensus       225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~  304 (558)
                          ..+++|++|++++|.+.+ +  ..+..+++|++|++++|.+.+..+   +..+++|+.|++++|+++.++.+..++
T Consensus       174 ----~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~  243 (466)
T 1o6v_A          174 ----ANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLT  243 (466)
T ss_dssp             ----TTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ----ccCCCCCEEECcCCcCCC-C--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCC
Confidence                888999999999999873 3  347899999999999999987655   667899999999999999988888999


Q ss_pred             CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCc
Q 048194          305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN  384 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~  384 (558)
                      +|+.|++++|.+.+..+  +..++.  |++|++++|.+++..+...+++|+.|++++|++.+                  
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~--L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~------------------  301 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTK--LTELKLGANQISNISPLAGLTALTNLELNENQLED------------------  301 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTT--CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC------------------
T ss_pred             CCCEEECCCCccccchh--hhcCCC--CCEEECCCCccCccccccCCCccCeEEcCCCcccC------------------
Confidence            99999999999976544  555555  99999999999987765558888888888877652                  


Q ss_pred             ccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194          385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL  464 (558)
Q Consensus       385 ~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~  464 (558)
                                   ++. +..+++|+.|++++|++++..|  +..+++|+.|++++|.+++.  ..+              
T Consensus       302 -------------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l--------------  349 (466)
T 1o6v_A          302 -------------ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL--------------  349 (466)
T ss_dssp             -------------CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG--------------
T ss_pred             -------------chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh--------------
Confidence                         222 6677889999999999997665  78999999999999999864  122              


Q ss_pred             hhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc-------CCCCCCeecCCCCcCc
Q 048194          465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG-------NLKRLESLDLSMNNLS  530 (558)
Q Consensus       465 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~L~~N~l~  530 (558)
                       ..+++|+.|++++|.+++..|  +..+++|+.|++++|++++ .|..+.       .+.++..+.+..+.++
T Consensus       350 -~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~~~~~~~ip~~~~~~~~~~~~~~~is  418 (466)
T 1o6v_A          350 -ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIAPATIS  418 (466)
T ss_dssp             -TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBCCCSEEEEECCCBCTTSCBCCCSEES
T ss_pred             -ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-CchhhcccceecccccccCCCeecCceec
Confidence             348999999999999998766  8999999999999999985 343321       1234445555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.5e-36  Score=308.20  Aligned_cols=365  Identities=19%  Similarity=0.165  Sum_probs=284.1

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+.+. +   .+..+++|++|++++|.+.+.  +  ++.+++|++|++++|.+++ ++  ++++++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCE
Confidence            7899999999999864 3   489999999999999999884  4  8899999999999999996 44  889999999


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY  224 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~  224 (558)
                      |++++|.+++ ++   ++.+++|++|++++|.+++ ++  ++.+++|++|++++|...+.++  +               
T Consensus       111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~---------------  166 (457)
T 3bz5_A          111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--V---------------  166 (457)
T ss_dssp             EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--C---------------
T ss_pred             EECCCCcCCe-ec---CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--c---------------
Confidence            9999999984 43   7899999999999999986 33  8899999999999997665553  2               


Q ss_pred             hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCC
Q 048194          225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS  304 (558)
Q Consensus       225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~  304 (558)
                          ..+++|++|++++|.+++ ++   +..+++|++|++++|.+++.   . +..+++|+.|++++|+++.+| +..++
T Consensus       167 ----~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~ip-~~~l~  233 (457)
T 3bz5_A          167 ----TPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTEID-VTPLT  233 (457)
T ss_dssp             ----TTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred             ----ccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccccC-ccccC
Confidence                788999999999999984 54   77899999999999999875   2 778999999999999999998 88999


Q ss_pred             CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCC-CCCCCcEEEccCC
Q 048194          305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ-LPNNPIYIDFSNN  383 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~n  383 (558)
                      +|++|++++|++++..+..   ++  +|+.|++++|.+            +.+++++|.+.+.+|. .+.+|+.|++++|
T Consensus       234 ~L~~L~l~~N~l~~~~~~~---l~--~L~~L~l~~n~L------------~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          234 QLTYFDCSVNPLTELDVST---LS--KLTTLHCIQTDL------------LEIDLTHNTQLIYFQAEGCRKIKELDVTHN  296 (457)
T ss_dssp             TCSEEECCSSCCSCCCCTT---CT--TCCEEECTTCCC------------SCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred             CCCEEEeeCCcCCCcCHHH---CC--CCCEEeccCCCC------------CEEECCCCccCCcccccccccCCEEECCCC
Confidence            9999999999998754332   33  377777766543            3445555554444442 2345566666666


Q ss_pred             cccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchh
Q 048194          384 NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIK  463 (558)
Q Consensus       384 ~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~  463 (558)
                      ...+.+|.. ...--.-.+..+++|++|++++|++++. +  +..+++|+.|++++|++++                   
T Consensus       297 ~~l~~l~~~-~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------------------  353 (457)
T 3bz5_A          297 TQLYLLDCQ-AAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------------------  353 (457)
T ss_dssp             TTCCEEECT-TCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------------------
T ss_pred             cccceeccC-CCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------------------
Confidence            555444421 0000111255667899999999999974 3  8899999999999999985                   


Q ss_pred             hhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCC-CCCCeecCCC
Q 048194          464 LQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL-KRLESLDLSM  526 (558)
Q Consensus       464 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~  526 (558)
                          ++.|..|++++|.+.|.     +.+..|+.+++++|+++|.+|..+... .++......+
T Consensus       354 ----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~  408 (457)
T 3bz5_A          354 ----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD  408 (457)
T ss_dssp             ----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESS
T ss_pred             ----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCC
Confidence                45667778888888874     456778889999999999888765433 3343344443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-34  Score=291.22  Aligned_cols=261  Identities=19%  Similarity=0.202  Sum_probs=190.0

Q ss_pred             ccCCCCCCCCCCC-ccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEE
Q 048194           43 KLMQWRQSTDCCD-WSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYL  121 (558)
Q Consensus        43 ~~~~w~~~~~~c~-~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  121 (558)
                      .++.|..+.+||. |.+..|....    +.+...........  .-..++++++|+++++.+... .+..+..+++|++|
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~----~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L   74 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYD----VHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELL   74 (390)
T ss_dssp             -----CCEECBCC------EEEES----CEECSSCCCCEESC--SSGGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEE
T ss_pred             CcCCCCCccceehhhhhhccceee----eeeecccccccccc--cccccCCceEEEecCCchhhC-ChhHhcccccCcEE
Confidence            4577888888876 4444443111    11122111111111  234578999999999988774 44557899999999


Q ss_pred             eCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccC
Q 048194          122 NLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQF  201 (558)
Q Consensus       122 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  201 (558)
                      ++++|.+++..+..|..+++|++|++++|.+++..+. .++++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence            9999999977777899999999999999999854444 689999999999999999844444468899999999999999


Q ss_pred             CCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC
Q 048194          202 GGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS  281 (558)
Q Consensus       202 ~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  281 (558)
                      .+..+..+                   ..+++|++|++++|.++ .++   +..+++|++|++++|.+.+.      ...
T Consensus       154 ~~~~~~~~-------------------~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~~------~~~  204 (390)
T 3o6n_A          154 ERIEDDTF-------------------QATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------AIP  204 (390)
T ss_dssp             CBCCTTTT-------------------SSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSEE------ECC
T ss_pred             CccChhhc-------------------cCCCCCCEEECCCCcCC-ccc---cccccccceeeccccccccc------CCC
Confidence            87767655                   78899999999999987 333   56789999999999988743      345


Q ss_pred             CCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc
Q 048194          282 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF  345 (558)
Q Consensus       282 ~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  345 (558)
                      +.|+.|++++|.++.+|. ...++|+.|++++|.+++.  ..+..++.  |++|++++|.+++.
T Consensus       205 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~--~~l~~l~~--L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDT--AWLLNYPG--LVEVDLSYNELEKI  263 (390)
T ss_dssp             SSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCC--GGGGGCTT--CSEEECCSSCCCEE
T ss_pred             CcceEEECCCCeeeeccc-cccccccEEECCCCCCccc--HHHcCCCC--ccEEECCCCcCCCc
Confidence            689999999999998875 3357899999999999753  44554444  66666666665544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=297.48  Aligned_cols=301  Identities=22%  Similarity=0.154  Sum_probs=180.3

Q ss_pred             CCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhh
Q 048194          141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQI  220 (558)
Q Consensus       141 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li  220 (558)
                      ++++|++++|.+++..+. .+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+           
T Consensus        33 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------  100 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF-----------  100 (477)
T ss_dssp             TCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS-----------
T ss_pred             CCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc-----------
Confidence            344444444444421121 33444444444444444443444444445555555555554443322222           


Q ss_pred             chhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-
Q 048194          221 KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-  299 (558)
Q Consensus       221 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-  299 (558)
                              ..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+.. +..+++|+.|++++|+++.++. 
T Consensus       101 --------~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A          101 --------TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             --------TTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHH
T ss_pred             --------cCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChh
Confidence                    34444444444444444 222233445555555555555554433333 4445555555555555554443 


Q ss_pred             -CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEE
Q 048194          300 -LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYI  378 (558)
Q Consensus       300 -~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  378 (558)
                       +..+++|+.|++++|.+.+..+..+.                        .+++|+.|++++|...             
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~------------------------~l~~L~~L~l~~~~~~-------------  213 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFK------------------------RLYRLKVLEISHWPYL-------------  213 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSC------------------------SCTTCCEEEEECCTTC-------------
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcc------------------------cCcccceeeCCCCccc-------------
Confidence             44555555555555554432222221                        1444555555444433             


Q ss_pred             EccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeecc
Q 048194          379 DFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIK  458 (558)
Q Consensus       379 ~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~  458 (558)
                                       +.+|.......+|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..      
T Consensus       214 -----------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  270 (477)
T 2id5_A          214 -----------------DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE------  270 (477)
T ss_dssp             -----------------CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT------
T ss_pred             -----------------cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc------
Confidence                             133333444457999999999998655567899999999999999998766655543      


Q ss_pred             ccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194          459 GLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA  532 (558)
Q Consensus       459 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  532 (558)
                               +++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++...
T Consensus       271 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          271 ---------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             ---------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ---------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence                     88999999999999988888999999999999999999976677788899999999999998754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=296.46  Aligned_cols=331  Identities=17%  Similarity=0.152  Sum_probs=241.5

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      +++++|+|++|.+.+. .+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .++...+.++++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            5899999999999886 6788999999999999999999888889999999999999999998 5544357889999999


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccCh
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL  250 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  250 (558)
                      ++++|.+.+..+..+..+++|++|++++|.+.+..+..+                   ..+++|++|++++|.++ .++.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~l~~L~~L~l~~n~l~-~~~~  169 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-------------------SGLNSLEQLTLEKCNLT-SIPT  169 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-------------------TTCTTCCEEEEESCCCS-SCCH
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhc-------------------cCCCCCCEEECCCCcCc-ccCh
Confidence            999999988888888999999999999999887666655                   77888999999999887 5666


Q ss_pred             hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194          251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVS  328 (558)
Q Consensus       251 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  328 (558)
                      ..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|... .+|. .....+|++|++++|.+++..+..+..  
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--  246 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--  246 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT--
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC--
Confidence            77888888888888888887655444 666666666666666432 4444 333345666666666554222122222  


Q ss_pred             cccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCC
Q 048194          329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL  408 (558)
Q Consensus       329 ~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L  408 (558)
                                            +++|+.|++++|.+.+                              ..+..+..+++|
T Consensus       247 ----------------------l~~L~~L~Ls~n~l~~------------------------------~~~~~~~~l~~L  274 (477)
T 2id5_A          247 ----------------------LVYLRFLNLSYNPIST------------------------------IEGSMLHELLRL  274 (477)
T ss_dssp             ----------------------CTTCCEEECCSSCCCE------------------------------ECTTSCTTCTTC
T ss_pred             ----------------------ccccCeeECCCCcCCc------------------------------cChhhccccccC
Confidence                                  4445555555554431                              233456777889


Q ss_pred             CEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchh
Q 048194          409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILED  488 (558)
Q Consensus       409 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  488 (558)
                      +.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..               +++|++|++++|.+.......
T Consensus       275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS---------------VGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC---------------GGGCCEEECCSSCEECSGGGH
T ss_pred             CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC---------------CcccCEEEccCCCccCccchH
Confidence            99999999998888888889999999999999888654444433               788888999888887532211


Q ss_pred             hcccCCCCeeeCcCCcCccccccccc
Q 048194          489 VGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       489 ~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                       .-...+..+.+.++......|..+.
T Consensus       340 -~~~~~~~~~~~~~~~~~C~~p~~~~  364 (477)
T 2id5_A          340 -WVFRRRWRLNFNRQQPTCATPEFVQ  364 (477)
T ss_dssp             -HHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred             -hHHhhhhccccCccCceeCCchHHc
Confidence             1123334455666666555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.5e-34  Score=304.59  Aligned_cols=325  Identities=21%  Similarity=0.221  Sum_probs=223.5

Q ss_pred             ccCCCCCCCCCCC----ccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCC
Q 048194           43 KLMQWRQSTDCCD----WSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSL  118 (558)
Q Consensus        43 ~~~~w~~~~~~c~----~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  118 (558)
                      .+..|.++.+||.    |.++.|..     .++-.........    .-..+.+++.+++++|.+... .+..+.++++|
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~-----~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L   77 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQV   77 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC-----EECSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHHHCCCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCc-----eecccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHccCCCC
Confidence            6788988888875    55554431     1111111111111    123467888888888887764 45567888888


Q ss_pred             CEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcc
Q 048194          119 TYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLAN  198 (558)
Q Consensus       119 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  198 (558)
                      ++|++++|.+++..|..|+.+++|++|+|++|.+++..+. .++++++|++|++++|.+++..+..+..+++|++|++++
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            8888888888877777888888888888888888854444 578888888888888888854445567888888888888


Q ss_pred             ccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCccc
Q 048194          199 NQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNY  278 (558)
Q Consensus       199 n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  278 (558)
                      |.+++..|..+                   ..+++|++|++++|.+++ ++   +..+++|+.|++++|.+.+      +
T Consensus       157 N~l~~~~~~~~-------------------~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~------l  207 (597)
T 3oja_B          157 NNLERIEDDTF-------------------QATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST------L  207 (597)
T ss_dssp             SCCCBCCTTTT-------------------TTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE------E
T ss_pred             CcCCCCChhhh-------------------hcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcccc------c
Confidence            88887776655                   778888888888888873 33   4567888888888887764      2


Q ss_pred             CCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC--CCCCccCE
Q 048194          279 SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRF  356 (558)
Q Consensus       279 ~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~  356 (558)
                      ...+.|+.|++++|.++.++.. ..++|+.|++++|.+++  +.++..++.  |++|++++|.+.+..+.  ..+++|+.
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~--~~~l~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTD--TAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCC--CGGGGGCTT--CSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             cCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCC--ChhhccCCC--CCEEECCCCccCCCCHHHhcCccCCCE
Confidence            3456788888888888877651 23678888888888875  355665555  88888888888877554  34788888


Q ss_pred             EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194          357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN  436 (558)
Q Consensus       357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  436 (558)
                      |++++|.+++                               +|..+..+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus       283 L~Ls~N~l~~-------------------------------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          283 LYISNNRLVA-------------------------------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             EECTTSCCCE-------------------------------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             EECCCCCCCC-------------------------------CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            8888887763                               2333344455666666666555 4444555556666666


Q ss_pred             CCCCcCcc
Q 048194          437 LGNNQFSD  444 (558)
Q Consensus       437 l~~n~i~~  444 (558)
                      +++|.+++
T Consensus       331 L~~N~l~~  338 (597)
T 3oja_B          331 LDHNSIVT  338 (597)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCCCCC
Confidence            66665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.6e-33  Score=284.05  Aligned_cols=313  Identities=19%  Similarity=0.183  Sum_probs=196.9

Q ss_pred             CCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194          115 ISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL  194 (558)
Q Consensus       115 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  194 (558)
                      ++++++|+++++.++...+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46677777777777643334456677777777777776632222 46666666666666666665555556666666666


Q ss_pred             eCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC
Q 048194          195 QLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES  274 (558)
Q Consensus       195 ~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  274 (558)
                      ++++|.++...+..+                   ..+++|++|++++|.+. .++...+..+++|++|++++|.++    
T Consensus       123 ~L~~n~l~~l~~~~~-------------------~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----  178 (390)
T 3o6n_A          123 VLERNDLSSLPRGIF-------------------HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT----  178 (390)
T ss_dssp             ECCSSCCCCCCTTTT-------------------TTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCS----
T ss_pred             ECCCCccCcCCHHHh-------------------cCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCC----
Confidence            666666653322222                   44555555555555554 333334445555555555555444    


Q ss_pred             CcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCcc
Q 048194          275 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPAL  354 (558)
Q Consensus       275 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L  354 (558)
                                           .++ +..+++|+.|++++|.+.+...     .  .++++|++++|.+...         
T Consensus       179 ---------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-----~--~~L~~L~l~~n~l~~~---------  220 (390)
T 3o6n_A          179 ---------------------HVD-LSLIPSLFHANVSYNLLSTLAI-----P--IAVEELDASHNSINVV---------  220 (390)
T ss_dssp             ---------------------BCC-GGGCTTCSEEECCSSCCSEEEC-----C--SSCSEEECCSSCCCEE---------
T ss_pred             ---------------------ccc-cccccccceeecccccccccCC-----C--CcceEEECCCCeeeec---------
Confidence                                 322 2333444444444444432100     0  1144444444433332         


Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                                   ....+.+|+.|++++|.+++          . ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus       221 -------------~~~~~~~L~~L~l~~n~l~~----------~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          221 -------------RGPVNVELTILKLQHNNLTD----------T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             -------------ECCCCSSCCEEECCSSCCCC----------C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             -------------cccccccccEEECCCCCCcc----------c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                         22223344455555554441          1 35677888999999999999888899999999999


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      |++++|.+++. |..+.               .+++|++|++++|.++. +|..++.+++|++|++++|+++. ++  +.
T Consensus       277 L~L~~n~l~~~-~~~~~---------------~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~-~~--~~  336 (390)
T 3o6n_A          277 LYISNNRLVAL-NLYGQ---------------PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK--LS  336 (390)
T ss_dssp             EECCSSCCCEE-ECSSS---------------CCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred             EECCCCcCccc-CcccC---------------CCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce-eC--ch
Confidence            99999998753 33322               27899999999999984 67778889999999999999984 44  67


Q ss_pred             CCCCCCeecCCCCcCcccch
Q 048194          515 NLKRLESLDLSMNNLSRAIP  534 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l~~~~~  534 (558)
                      .+++|+.|++++|++.....
T Consensus       337 ~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             TTCCCSEEECCSSCEEHHHH
T ss_pred             hhccCCEEEcCCCCccchhH
Confidence            88999999999999976433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.8e-33  Score=275.07  Aligned_cols=307  Identities=23%  Similarity=0.297  Sum_probs=187.6

Q ss_pred             ccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccc
Q 048194          136 ISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSA  215 (558)
Q Consensus       136 l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  215 (558)
                      +..+++|++|++++|.+. .++  .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +      
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~~-~------  106 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-ISA-L------  106 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-G------
T ss_pred             chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-chH-H------
Confidence            345667777777777766 444  25666777777777776663 333 6666777777777766653 222 2      


Q ss_pred             hhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC
Q 048194          216 LDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR  295 (558)
Q Consensus       216 l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  295 (558)
                                   ..+++|++|++++|.+. .++.  +..+++|++|++++|......+.  +..+++|+.|++++|.++
T Consensus       107 -------------~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~  168 (347)
T 4fmz_A          107 -------------QNLTNLRELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK  168 (347)
T ss_dssp             -------------TTCTTCSEEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             -------------cCCCcCCEEECcCCccc-Cchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC
Confidence                         55666666666666665 2221  55566666666666543322211  444555555555555555


Q ss_pred             CCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCC
Q 048194          296 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNP  375 (558)
Q Consensus       296 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  375 (558)
                      .++.+..+++|++|++++|.+                          .+......+++|+.+++++|.+.+         
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~l~~L~~L~l~~n~l~~---------  213 (347)
T 4fmz_A          169 DVTPIANLTDLYSLSLNYNQI--------------------------EDISPLASLTSLHYFTAYVNQITD---------  213 (347)
T ss_dssp             CCGGGGGCTTCSEEECTTSCC--------------------------CCCGGGGGCTTCCEEECCSSCCCC---------
T ss_pred             CchhhccCCCCCEEEccCCcc--------------------------cccccccCCCccceeecccCCCCC---------
Confidence            444444445555555555544                          333222224445555554444331         


Q ss_pred             cEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCcee
Q 048194          376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI  455 (558)
Q Consensus       376 ~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~  455 (558)
                                            ++. +..+++|++|++++|.+++..+  +..+++|++|++++|.+++. + .      
T Consensus       214 ----------------------~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~------  260 (347)
T 4fmz_A          214 ----------------------ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-A------  260 (347)
T ss_dssp             ----------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-G------
T ss_pred             ----------------------Cch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-h------
Confidence                                  111 4455667777777777764333  66777777777777776542 1 1      


Q ss_pred             eccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchh
Q 048194          456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS  535 (558)
Q Consensus       456 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  535 (558)
                               ...+++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..| 
T Consensus       261 ---------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-  328 (347)
T 4fmz_A          261 ---------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-  328 (347)
T ss_dssp             ---------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred             ---------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence                     22367777777777777753  457788888888888888887778888888888888888888886555 


Q ss_pred             hhcCCCCCCEEeCcCCcCe
Q 048194          536 QLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       536 ~~~~l~~L~~L~l~~n~l~  554 (558)
                       +..+++|++|++++|+|+
T Consensus       329 -~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 -LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GGGCTTCSEESSSCC---
T ss_pred             -hhhhhccceeehhhhccc
Confidence             777888888888888876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-32  Score=272.27  Aligned_cols=308  Identities=22%  Similarity=0.300  Sum_probs=239.3

Q ss_pred             hhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCC
Q 048194          111 KLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPM  190 (558)
Q Consensus       111 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  190 (558)
                      .+..+++|++|+++++.+. .++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+ + ..+..+++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred             cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCc
Confidence            3567899999999999998 455 4889999999999999998 5543  8899999999999999984 4 46899999


Q ss_pred             CCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCccc
Q 048194          191 LQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLA  270 (558)
Q Consensus       191 L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  270 (558)
                      |++|++++|.+.+..+  +                   ..+++|++|++++|...+.++  .+..+++|++|++++|.+.
T Consensus       112 L~~L~l~~n~i~~~~~--~-------------------~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~  168 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--L-------------------ANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVK  168 (347)
T ss_dssp             CSEEECTTSCCCCCGG--G-------------------TTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCEEECcCCcccCchh--h-------------------ccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcC
Confidence            9999999999985433  3                   789999999999997654443  4889999999999999987


Q ss_pred             ccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCC
Q 048194          271 VDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYS  350 (558)
Q Consensus       271 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  350 (558)
                      +..+   +..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+..+  +..++.  |++|++++|.+++.     
T Consensus       169 ~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~--L~~L~l~~n~l~~~-----  236 (347)
T 4fmz_A          169 DVTP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTR--LNSLKIGNNKITDL-----  236 (347)
T ss_dssp             CCGG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTT--CCEEECCSSCCCCC-----
T ss_pred             Cchh---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCc--CCEEEccCCccCCC-----
Confidence            6544   67899999999999999988888888999999999998865433  333222  44444444444322     


Q ss_pred             CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCC
Q 048194          351 IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCK  430 (558)
Q Consensus       351 ~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  430 (558)
                                                                      +. +..+++|++|++++|.+++.  +.+..++
T Consensus       237 ------------------------------------------------~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~  265 (347)
T 4fmz_A          237 ------------------------------------------------SP-LANLSQLTWLEIGTNQISDI--NAVKDLT  265 (347)
T ss_dssp             ------------------------------------------------GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             ------------------------------------------------cc-hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence                                                            22 45556677777777777642  3567777


Q ss_pred             CCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccc
Q 048194          431 MLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP  510 (558)
Q Consensus       431 ~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  510 (558)
                      +|++|++++|.+++. +                .+..+++|++|++++|.+++..+..++.+++|++|++++|++++..|
T Consensus       266 ~L~~L~l~~n~l~~~-~----------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI-S----------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TCCEEECCSSCCCCC-G----------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CcCEEEccCCccCCC-h----------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            888888888777642 1                12347788888888888887778888899999999999999986555


Q ss_pred             ccccCCCCCCeecCCCCcCc
Q 048194          511 SSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       511 ~~l~~l~~L~~L~L~~N~l~  530 (558)
                        +..+++|+.|++++|+++
T Consensus       329 --~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 --LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             --GGGCTTCSEESSSCC---
T ss_pred             --hhhhhccceeehhhhccc
Confidence              788999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.1e-33  Score=294.10  Aligned_cols=313  Identities=19%  Similarity=0.183  Sum_probs=207.8

Q ss_pred             CCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194          115 ISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL  194 (558)
Q Consensus       115 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  194 (558)
                      +++++.+++++|.+....+..+.++++|++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..++.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            56778888888887755555567788888888888877743333 56777777777777777776666666777777777


Q ss_pred             eCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC
Q 048194          195 QLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES  274 (558)
Q Consensus       195 ~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  274 (558)
                      ++++|.+++..+..+                   ..+++|++|++++|.++ .+++..+..+++|++|++++|.+.+   
T Consensus       129 ~L~~n~l~~l~~~~~-------------------~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~---  185 (597)
T 3oja_B          129 VLERNDLSSLPRGIF-------------------HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---  185 (597)
T ss_dssp             ECCSSCCCCCCTTTT-------------------TTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB---
T ss_pred             EeeCCCCCCCCHHHh-------------------ccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC---
Confidence            777777764433333                   55566666666666665 3333445555555555555555543   


Q ss_pred             CcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCcc
Q 048194          275 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPAL  354 (558)
Q Consensus       275 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L  354 (558)
                                            ++ +..+++|+.|++++|.+.+...     .  ..|+.|++++|.+            
T Consensus       186 ----------------------~~-~~~l~~L~~L~l~~n~l~~l~~-----~--~~L~~L~ls~n~l------------  223 (597)
T 3oja_B          186 ----------------------VD-LSLIPSLFHANVSYNLLSTLAI-----P--IAVEELDASHNSI------------  223 (597)
T ss_dssp             ----------------------CC-GGGCTTCSEEECCSSCCSEEEC-----C--TTCSEEECCSSCC------------
T ss_pred             ----------------------cC-hhhhhhhhhhhcccCccccccC-----C--chhheeeccCCcc------------
Confidence                                  22 2233444444444444432100     0  0133333333333            


Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                                ....+..+.+|+.|++++|.+++           +..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus       224 ----------~~~~~~~~~~L~~L~L~~n~l~~-----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          224 ----------NVVRGPVNVELTILKLQHNNLTD-----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ----------CEEECSCCSCCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ----------cccccccCCCCCEEECCCCCCCC-----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence                      32222233445555555555552           245777888999999999999888999999999999


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      |++++|.+++. |..+.               .+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+++ +|  +.
T Consensus       283 L~Ls~N~l~~l-~~~~~---------------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~  342 (597)
T 3oja_B          283 LYISNNRLVAL-NLYGQ---------------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LS  342 (597)
T ss_dssp             EECTTSCCCEE-ECSSS---------------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred             EECCCCCCCCC-Ccccc---------------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hh
Confidence            99999999863 43332               2789999999999998 467788899999999999999984 33  67


Q ss_pred             CCCCCCeecCCCCcCcccch
Q 048194          515 NLKRLESLDLSMNNLSRAIP  534 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l~~~~~  534 (558)
                      .+++|+.|++++|++.+...
T Consensus       343 ~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          343 THHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             TTCCCSEEECCSSCEEHHHH
T ss_pred             hcCCCCEEEeeCCCCCChhH
Confidence            88899999999999876433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2.4e-35  Score=304.65  Aligned_cols=213  Identities=18%  Similarity=0.236  Sum_probs=100.9

Q ss_pred             CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCcc----CCChhccCCCCCcEEecccccccccccchhhcCCC--
Q 048194           92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAG----QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL--  165 (558)
Q Consensus        92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~--  165 (558)
                      +|++|++++|.+++......+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+......++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            344555555544433222234445555555555555442    12344444555555555555554322111122233  


Q ss_pred             --CccEEEccCCccCc----cCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEc
Q 048194          166 --NLVCAVLSDNSLDG----SIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLL  239 (558)
Q Consensus       166 --~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l  239 (558)
                        +|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+..              ......++|++|++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------------~l~~~~~~L~~L~L  149 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------GLLDPQCRLEKLQL  149 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------HHTSTTCCCCEEEC
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--------------HHhcCCCcceEEEC
Confidence              45555555555542    33555556666666666666654332221100              00022345666666


Q ss_pred             ccccCCcccC---hhhhcCCCCCCEEEccCCcccccCCCccc----CCCCCCCEEecCCCCCCC-----CCC-CCCCCCC
Q 048194          240 SSNNLNGTVQ---LDKILSLGNLAKLDLSYNSLAVDESSRNY----SFSPMLELLNLASCKLRE-----IPN-LKNQSQL  306 (558)
Q Consensus       240 ~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~-----l~~-~~~~~~L  306 (558)
                      ++|.+++...   ...+..+++|++|++++|.+.+..+....    ...++|+.|++++|.++.     ++. +..+++|
T Consensus       150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  229 (461)
T 1z7x_W          150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL  229 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred             CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence            6666553211   12344556666666666665533222100    123455666666665553     233 4455666


Q ss_pred             CEEecCCCcccc
Q 048194          307 QYLYLSENQISR  318 (558)
Q Consensus       307 ~~L~l~~n~l~~  318 (558)
                      ++|++++|.+.+
T Consensus       230 ~~L~Ls~n~l~~  241 (461)
T 1z7x_W          230 RELALGSNKLGD  241 (461)
T ss_dssp             CEEECCSSBCHH
T ss_pred             cEEeccCCcCCh
Confidence            666666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.3e-29  Score=247.71  Aligned_cols=176  Identities=22%  Similarity=0.338  Sum_probs=99.1

Q ss_pred             CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeC
Q 048194          117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL  196 (558)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  196 (558)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..+. .++++++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3445555555544 3443332  3455555555555522222 3555555555555555555555666666666777777


Q ss_pred             ccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccc--cCC
Q 048194          197 ANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV--DES  274 (558)
Q Consensus       197 ~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~  274 (558)
                      ++|.++ .+|..                     ..++|++|++++|.+. .++...+..+++|++|++++|.+..  ..+
T Consensus       108 s~n~l~-~l~~~---------------------~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A          108 SKNQLK-ELPEK---------------------MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             CSSCCS-BCCSS---------------------CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             CCCcCC-ccChh---------------------hcccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            766665 33332                     1256777777777766 4555667777777777777777653  222


Q ss_pred             CcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCCh
Q 048194          275 SRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPN  322 (558)
Q Consensus       275 ~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~  322 (558)
                      .. +..+++|+.|++++|.++.+|. +.  ++|++|++++|++.+..+.
T Consensus       165 ~~-~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~  210 (330)
T 1xku_A          165 GA-FQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAA  210 (330)
T ss_dssp             TG-GGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTG
T ss_pred             hh-ccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHH
Confidence            22 5566666666666666666654 21  4555555555555443333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.1e-29  Score=247.91  Aligned_cols=287  Identities=20%  Similarity=0.237  Sum_probs=220.8

Q ss_pred             CCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCc
Q 048194          189 PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNS  268 (558)
Q Consensus       189 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  268 (558)
                      .+++.++++++.++ .+|..                     -.+.++.|++++|.++ .++...+..+++|++|++++|.
T Consensus        31 c~l~~l~~~~~~l~-~lp~~---------------------~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~   87 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKD---------------------LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK   87 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCS---------------------CCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCeEEEecCCCcc-ccCcc---------------------CCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCc
Confidence            36888888888877 45542                     2367899999999998 5665678899999999999999


Q ss_pred             ccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc--
Q 048194          269 LAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--  345 (558)
Q Consensus       269 l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--  345 (558)
                      +++..+.. +..+++|++|++++|+++.+|. +.  ++|++|++++|.+.+..+..+..+..  |++|++++|.+...  
T Consensus        88 l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~  162 (330)
T 1xku_A           88 ISKISPGA-FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ--MIVVELGTNPLKSSGI  162 (330)
T ss_dssp             CCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT--CCEEECCSSCCCGGGB
T ss_pred             CCeeCHHH-hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcc--ccEEECCCCcCCccCc
Confidence            98776666 8889999999999999998887 33  78999999999998666666766665  88888888887642  


Q ss_pred             CCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCC
Q 048194          346 QAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVP  423 (558)
Q Consensus       346 ~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~  423 (558)
                      .+.  ..+++|+.|++++|.++                               .+|..+.  ++|++|++++|.+++..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~-------------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~  209 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNIT-------------------------------TIPQGLP--PSLTELHLDGNKITKVDA  209 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-------------------------------SCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred             ChhhccCCCCcCEEECCCCccc-------------------------------cCCcccc--ccCCEEECCCCcCCccCH
Confidence            221  22666666666666654                               3343332  578888888888887778


Q ss_pred             cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCC
Q 048194          424 KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHN  503 (558)
Q Consensus       424 ~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n  503 (558)
                      ..+..+++|++|++++|.+++..+..+..               +++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLAN---------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGG---------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccC---------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence            88888888999999988888766555433               788899999999888 56778889999999999999


Q ss_pred             cCcccccccccC------CCCCCeecCCCCcCcc--cchhhhcCCCCCCEEeCcCCc
Q 048194          504 ALTGSIPSSFGN------LKRLESLDLSMNNLSR--AIPSQLASLYFLSYLNLSYNQ  552 (558)
Q Consensus       504 ~l~~~~~~~l~~------l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~  552 (558)
                      ++++..+..|..      .+.++.|++++|.+..  ..|..|..+.+++.+++++|+
T Consensus       274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            998666666643      3788999999999863  566888889999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.8e-31  Score=261.67  Aligned_cols=280  Identities=16%  Similarity=0.199  Sum_probs=172.4

Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCCCCcccCCC----CCCCCCCCccceEeCC---------CCCEEEEEcCCCCccccccC
Q 048194           17 GQCQSDQQTLLLQLKSSLTFDPSSSVKLMQW----RQSTDCCDWSGVDCDE---------AGHVIGLDLSTESISGGIEN   83 (558)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~c~~---------~~~v~~L~l~~~~~~~~~~~   83 (558)
                      .++..+|++||++||+.+..++..  ....|    ....++|.|.|+.|..         .++|+.|+++++.+. .+|.
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~--~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNR--WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTT--HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             cccCchHHHHHHHHHHhccCCchh--hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            345668999999999988655532  56788    4578899999999942         156777777777666 4444


Q ss_pred             cccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcC
Q 048194           84 AAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEH  163 (558)
Q Consensus        84 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~  163 (558)
                        .+..+++|++|++++|.+. . +|..++++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|. .+..
T Consensus        99 --~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~  172 (328)
T 4fcg_A           99 --QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLAS  172 (328)
T ss_dssp             --CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEE
T ss_pred             --hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhh
Confidence              4666777777777777766 3 6666677777777777777766 6666677777777777777666655543 1221


Q ss_pred             CCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc
Q 048194          164 LLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN  243 (558)
Q Consensus       164 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~  243 (558)
                            .         ..+..+..+++|++|++++|.++ .+|..+                   ..+++|++|++++|.
T Consensus       173 ------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-------------------~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          173 ------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASI-------------------ANLQNLKSLKIRNSP  217 (328)
T ss_dssp             ------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGG-------------------GGCTTCCEEEEESSC
T ss_pred             ------c---------cchhhhccCCCCCEEECcCCCcC-cchHhh-------------------cCCCCCCEEEccCCC
Confidence                  0         00111223555555555555554 334333                   444555555555555


Q ss_pred             CCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCC
Q 048194          244 LNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIP  321 (558)
Q Consensus       244 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~  321 (558)
                      ++ .++. .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+. .+|. +..+++|++|++++|++.+.+|
T Consensus       218 l~-~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          218 LS-ALGP-AIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CC-CCCG-GGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CC-cCch-hhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            54 2332 3455555555555555555554444 555666666666665433 5555 6677777777777777777777


Q ss_pred             hhHHhhccccceEEEcCCcccccc
Q 048194          322 NWIWRVSVVGLHCLNLSHNFLVGF  345 (558)
Q Consensus       322 ~~~~~~~~~~L~~L~ls~n~l~~~  345 (558)
                      ..+..++.  ++.+++..+.+...
T Consensus       295 ~~l~~L~~--L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          295 SLIAQLPA--NCIILVPPHLQAQL  316 (328)
T ss_dssp             GGGGGSCT--TCEEECCGGGSCC-
T ss_pred             HHHhhccC--ceEEeCCHHHHHHH
Confidence            77777666  77777776665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1e-29  Score=250.38  Aligned_cols=264  Identities=21%  Similarity=0.256  Sum_probs=156.6

Q ss_pred             CCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEec
Q 048194          233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYL  311 (558)
Q Consensus       233 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l  311 (558)
                      +++.|++++|.+. .++...+..+++|++|++++|.+++..+.. +..+++|++|++++|+++.+|. +.  ++|++|++
T Consensus        55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence            4444555554444 333334445555555555555554433333 4455555555555555555554 22  45555555


Q ss_pred             CCCcccccCChhHHhhccccceEEEcCCcccccc--CCC-CC-CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccc
Q 048194          312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--QAP-YS-IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS  387 (558)
Q Consensus       312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~  387 (558)
                      ++|++.+..+..+..++.  |++|++++|.++..  .+. .. + +|+.|++++|+++                      
T Consensus       131 ~~n~i~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~----------------------  185 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRN--MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT----------------------  185 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSS--CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS----------------------
T ss_pred             CCCccCccCHhHhCCCcc--CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC----------------------
Confidence            555554333333433333  45555554444321  111 11 2 4444444444433                      


Q ss_pred             cCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194          388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI  467 (558)
Q Consensus       388 ~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~  467 (558)
                               .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.               .
T Consensus       186 ---------~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---------------~  239 (332)
T 2ft3_A          186 ---------GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS---------------F  239 (332)
T ss_dssp             ---------SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG---------------G
T ss_pred             ---------ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh---------------C
Confidence                     2333332  4677777777777766667777777777788877777765554443               2


Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccC------CCCCCeecCCCCcCc--ccchhhhcC
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN------LKRLESLDLSMNNLS--RAIPSQLAS  539 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~L~~N~l~--~~~~~~~~~  539 (558)
                      +++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..      ...|+.|++++|++.  ...|..|..
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            677888888888777 56677888889999999999888666666654      367889999999887  567788888


Q ss_pred             CCCCCEEeCcCCc
Q 048194          540 LYFLSYLNLSYNQ  552 (558)
Q Consensus       540 l~~L~~L~l~~n~  552 (558)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            9999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3e-33  Score=288.91  Aligned_cols=384  Identities=19%  Similarity=0.137  Sum_probs=217.7

Q ss_pred             CCCCEEeCcCCcCccCCChh-ccCCCCCcEEeccccccccc----ccchhhcCCCCccEEEccCCccCccCCcccc-CCC
Q 048194          116 SSLTYLNLSDAGFAGQIPVQ-ISRMARLVALDFSFNQFSGS----ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF-EFP  189 (558)
Q Consensus       116 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~  189 (558)
                      ++|++|++++|.++...... +..+++|++|++++|.+++.    ++. .+..+++|++|++++|.+.+..+..+. .++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            45667777777665433222 55666777777777766532    122 355566666666666666543332222 233


Q ss_pred             ----CCCEEeCccccCCCC----CCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChh----hhcCCC
Q 048194          190 ----MLQQLQLANNQFGGS----IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLD----KILSLG  257 (558)
Q Consensus       190 ----~L~~L~l~~n~~~~~----~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~l~  257 (558)
                          +|++|++++|.+++.    ++..+                   ..+++|++|++++|.+++..+..    .....+
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l-------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTL-------------------RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHT-------------------TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHH-------------------ccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence                466666666665532    12222                   55556666666666554221110    011234


Q ss_pred             CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHh-h--ccccce
Q 048194          258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWR-V--SVVGLH  333 (558)
Q Consensus       258 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~-~--~~~~L~  333 (558)
                      +|++|++++|.+++.....                    ++. +..+++|++|++++|.+.+..+..+.. +  ..++|+
T Consensus       143 ~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEP--------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHH--------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             cceEEECCCCCCCHHHHHH--------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence            4555555555554322110                    111 333445555555555544332222221 0  011355


Q ss_pred             EEEcCCccccccC-----CC-CCCCccCEEEcccccCccc--------CCCCCCCCcEEEccCCcccccCCCCCccCCCC
Q 048194          334 CLNLSHNFLVGFQ-----AP-YSIPALRFIDLISNQLRGN--------IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP  399 (558)
Q Consensus       334 ~L~ls~n~l~~~~-----~~-~~~~~L~~L~l~~n~~~~~--------~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p  399 (558)
                      +|++++|.++...     .. ..+++|++|++++|.+.+.        +.....+|++|++++|.+++.-.     ..++
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-----~~l~  277 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-----GDLC  277 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----HHHH
T ss_pred             EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-----HHHH
Confidence            5555555554321     11 1245566666666555431        11124466666666666652100     0145


Q ss_pred             CCCCCCCCCCEEECcCCcCCccCCccccc-----CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEE
Q 048194          400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAK-----CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI  474 (558)
Q Consensus       400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L  474 (558)
                      ..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.....+           ...+..+++|++|
T Consensus       278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-----------~~~l~~~~~L~~L  346 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-----------SSVLAQNRFLLEL  346 (461)
T ss_dssp             HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-----------HHHHHHCSSCCEE
T ss_pred             HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH-----------HHHHhhCCCccEE
Confidence            55666788999999999987654444433     3689999999998875422111           1223457899999


Q ss_pred             ECCCCcccccCchhhcc-----cCCCCeeeCcCCcCcc----cccccccCCCCCCeecCCCCcCcccchhhhc-----CC
Q 048194          475 DFSTNNFKGPILEDVGL-----LKSLYGLNLSHNALTG----SIPSSFGNLKRLESLDLSMNNLSRAIPSQLA-----SL  540 (558)
Q Consensus       475 ~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-----~l  540 (558)
                      ++++|.+++..+..+..     .++|++|++++|++++    .+|..+..+++|++|++++|++++.....+.     ..
T Consensus       347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~  426 (461)
T 1z7x_W          347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG  426 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTT
T ss_pred             EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCC
Confidence            99999988765555543     6799999999999986    6788888899999999999999865333322     23


Q ss_pred             CCCCEEeCcCCcCee
Q 048194          541 YFLSYLNLSYNQLEG  555 (558)
Q Consensus       541 ~~L~~L~l~~n~l~~  555 (558)
                      .+|+.|++.++.+..
T Consensus       427 ~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          427 CLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCCCEEECTTCCCCH
T ss_pred             cchhheeecccccCH
Confidence            468888888776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.9e-29  Score=247.10  Aligned_cols=286  Identities=19%  Similarity=0.228  Sum_probs=164.9

Q ss_pred             CCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhh
Q 048194          141 RLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQI  220 (558)
Q Consensus       141 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li  220 (558)
                      +++.++++++.++ .+|. .+  .++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..+           
T Consensus        34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-----------   98 (332)
T ss_dssp             ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-----------
T ss_pred             cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-----------
Confidence            5677777777666 4443 12  2466666666666665555566666666666666666654444443           


Q ss_pred             chhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-
Q 048194          221 KRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-  299 (558)
Q Consensus       221 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-  299 (558)
                              ..+++|++|++++|.++ .++...+   ++|++|++++|                         +++.++. 
T Consensus        99 --------~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n-------------------------~i~~~~~~  141 (332)
T 2ft3_A           99 --------SPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDN-------------------------RIRKVPKG  141 (332)
T ss_dssp             --------TTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSS-------------------------CCCCCCSG
T ss_pred             --------hCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCC-------------------------ccCccCHh
Confidence                    55555666666655554 3332211   44445555544                         4444443 


Q ss_pred             -CCCCCCCCEEecCCCcccc--cCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCc
Q 048194          300 -LKNQSQLQYLYLSENQISR--EIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPI  376 (558)
Q Consensus       300 -~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  376 (558)
                       +..+++|++|++++|.+..  ..+..+..+   +|++|++++|.+++++... .++|+.|++++|.+.           
T Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~-----------  206 (332)
T 2ft3_A          142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQ-----------  206 (332)
T ss_dssp             GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCC-----------
T ss_pred             HhCCCccCCEEECCCCccccCCCCcccccCC---ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCC-----------
Confidence             4445555555555555431  233333322   2555555555555433221 244555555555443           


Q ss_pred             EEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceee
Q 048194          377 YIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT  456 (558)
Q Consensus       377 ~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  456 (558)
                                         +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..    
T Consensus       207 -------------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~----  262 (332)
T 2ft3_A          207 -------------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD----  262 (332)
T ss_dssp             -------------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG----
T ss_pred             -------------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc----
Confidence                               123345666667777777777777666666777777777777777776 45544432    


Q ss_pred             ccccchhhhhhhccceEEECCCCcccccCchhhcc------cCCCCeeeCcCCcCc--ccccccccCCCCCCeecCCCCc
Q 048194          457 IKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL------LKSLYGLNLSHNALT--GSIPSSFGNLKRLESLDLSMNN  528 (558)
Q Consensus       457 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~N~  528 (558)
                                 +++|+.|++++|.+++..+..|..      .++|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       263 -----------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 -----------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -----------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -----------CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                       677777777777777665555543      356788888888876  5666778888888888888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.9e-30  Score=252.88  Aligned_cols=247  Identities=26%  Similarity=0.352  Sum_probs=218.8

Q ss_pred             CCCCEEECCCCCCCC--CccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194           91 HYLRSLNLARTSFNG--TQISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL  167 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  167 (558)
                      .++++|++++|.+.+  . +|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|. .+.++++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCC
Confidence            579999999999987  6 899999999999999995 999999999999999999999999999977776 68999999


Q ss_pred             cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCC-CCCEEEcccccCCc
Q 048194          168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQ-KLTPLLLSSNNLNG  246 (558)
Q Consensus       168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~-~L~~L~l~~n~l~~  246 (558)
                      ++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+                   ..++ +|++|++++|.+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-------------------~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-------------------GSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-------------------GCCCTTCCEEECCSSEEEE
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-------------------hhhhhcCcEEECcCCeeec
Confidence            999999999999999999999999999999999998888776                   6776 99999999999987


Q ss_pred             ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHH
Q 048194          247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIW  325 (558)
Q Consensus       247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~  325 (558)
                      .++ ..+..++ |++|++++|.+.+..+.. +..+++|+.|++++|+++..+. +..+++|++|++++|++++.+|..+.
T Consensus       189 ~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  265 (313)
T 1ogq_A          189 KIP-PTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             ECC-GGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             cCC-hHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence            776 5677776 999999999998776665 8899999999999999985444 88899999999999999989999888


Q ss_pred             hhccccceEEEcCCccccccCCCCC-CCccCEEEccccc
Q 048194          326 RVSVVGLHCLNLSHNFLVGFQAPYS-IPALRFIDLISNQ  363 (558)
Q Consensus       326 ~~~~~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~l~~n~  363 (558)
                      .++.  |++|++++|.+++..+... +++|+.+++++|.
T Consensus       266 ~l~~--L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          266 QLKF--LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GCTT--CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cCcC--CCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            7766  8888888888886655533 7777777777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.2e-31  Score=283.95  Aligned_cols=403  Identities=14%  Similarity=0.068  Sum_probs=228.4

Q ss_pred             cccCCCCCCEEECCCCCCC---CC-----------ccchhhcCCCCCCEEeCcCCcCccCCChhccC-CCC-CcEEeccc
Q 048194           86 ILFSLHYLRSLNLARTSFN---GT-----------QISSKLANISSLTYLNLSDAGFAGQIPVQISR-MAR-LVALDFSF  149 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~---~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~-L~~L~L~~  149 (558)
                      .+..+++|++|+++++...   +.           .++.....+++|++|+|++|.+++..+..+.. +++ |++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            5678899999999775321   11           01122237899999999999888766666665 444 99999998


Q ss_pred             ccc-cccc-cchhhcCCCCccEEEccCCccCcc----CCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchh
Q 048194          150 NQF-SGSI-SSIRWEHLLNLVCAVLSDNSLDGS----IPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRV  223 (558)
Q Consensus       150 n~~-~~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~  223 (558)
                      |.. +... +. ...++++|++|++++|.+++.    ++.....+++|++|++++|.+++.....+           +..
T Consensus       148 ~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-----------~~~  215 (592)
T 3ogk_B          148 CSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-----------ETI  215 (592)
T ss_dssp             CEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-----------HHH
T ss_pred             CCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-----------HHH
Confidence            862 2111 22 345789999999999988655    33344578999999999998863322211           111


Q ss_pred             hhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccc--cCCCcccCCCCCCCEEecCCCCCCCCCC-C
Q 048194          224 YSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV--DESSRNYSFSPMLELLNLASCKLREIPN-L  300 (558)
Q Consensus       224 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~  300 (558)
                      +    ..+++|++|++++|.+.+ ++ ..+..+++|++|+++......  ......+..+++|+.+.+.++....+|. +
T Consensus       216 ~----~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~  289 (592)
T 3ogk_B          216 A----RNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF  289 (592)
T ss_dssp             H----HHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred             H----hhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH
Confidence            2    567899999999988874 44 567888999999988643221  1111226677788888888776667776 6


Q ss_pred             CCCCCCCEEecCCCcccccCCh-hHHhhccccceEEEcCCccccccCC-C--CCCCccCEEEccc-----------ccCc
Q 048194          301 KNQSQLQYLYLSENQISREIPN-WIWRVSVVGLHCLNLSHNFLVGFQA-P--YSIPALRFIDLIS-----------NQLR  365 (558)
Q Consensus       301 ~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~-~--~~~~~L~~L~l~~-----------n~~~  365 (558)
                      ..+++|++|++++|.+++.... .+..++  +|++|+++ +.+.+... .  ..+++|++|++++           +.++
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~--~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCP--NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCT--TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCc--CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence            6778888888888876543332 233333  37777777 33332111 1  1267777777772           3443


Q ss_pred             cc----CCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCC-CCCCCEEECc----CCcCCcc-----CCcccccCCC
Q 048194          366 GN----IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPR-NCLLQTLDLN----GNRPQGT-----VPKSIAKCKM  431 (558)
Q Consensus       366 ~~----~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~  431 (558)
                      +.    +....++|++|+++.+.+++.         .+..+.. +++|+.|+++    .|.+++.     ++..+..+++
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~---------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~  437 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVYVSDITNE---------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK  437 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEESCCCHH---------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhCccCeEEEeecCCccHH---------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence            21    011234555555555544421         1112222 4445555553    3344432     2222344555


Q ss_pred             CCEEECCCCc--CcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc-CchhhcccCCCCeeeCcCCcCccc
Q 048194          432 LEVLNLGNNQ--FSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP-ILEDVGLLKSLYGLNLSHNALTGS  508 (558)
Q Consensus       432 L~~L~l~~n~--i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  508 (558)
                      |+.|++++|.  +++..+..              ....+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus       438 L~~L~L~~~~~~l~~~~~~~--------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSY--------------IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHH--------------HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             CCEEEEecCCCCccHHHHHH--------------HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence            5555554332  22211110              112244555555555555432 222334455555555555555432


Q ss_pred             -ccccccCCCCCCeecCCCCcCccc
Q 048194          509 -IPSSFGNLKRLESLDLSMNNLSRA  532 (558)
Q Consensus       509 -~~~~l~~l~~L~~L~L~~N~l~~~  532 (558)
                       ++..+..+++|+.|++++|++++.
T Consensus       504 ~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          504 AIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhcCccCeeECcCCcCCHH
Confidence             222234455555555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5e-27  Score=228.43  Aligned_cols=224  Identities=24%  Similarity=0.297  Sum_probs=134.8

Q ss_pred             CCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCccccc--CChhHHhhccccceEEEcCCccccccCCC-CCCCccCE
Q 048194          282 PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISRE--IPNWIWRVSVVGLHCLNLSHNFLVGFQAP-YSIPALRF  356 (558)
Q Consensus       282 ~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~L~~  356 (558)
                      +++++|++++|+++.+|.  +..+++|++|++++|.+...  .+..+..+..  |++|++++|.+...+.. ..+++|+.
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~--L~~L~Ls~n~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC--CCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc--cCEEECCCCccccChhhcCCCCCCCE
Confidence            455555555555555554  45666666666666665422  2344443333  66666666666554433 23566666


Q ss_pred             EEcccccCcccCC----CCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCc-cCCcccccCCC
Q 048194          357 IDLISNQLRGNIH----QLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQG-TVPKSIAKCKM  431 (558)
Q Consensus       357 L~l~~n~~~~~~~----~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~  431 (558)
                      |++++|.+.+..+    ..+.+|++|++++|.+.         +..+..+..+++|++|++++|.+.+ ..|..+..+++
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE---------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCC---------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            6666665553221    12334555555555544         2344556666777777777777765 45666777777


Q ss_pred             CCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccc
Q 048194          432 LEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS  511 (558)
Q Consensus       432 L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  511 (558)
                      |++|++++|.+++..|..+..               +++|++|++++|.+++..+..+..+++|++|++++|++++..|.
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNS---------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTT---------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             CCEEECCCCCcCCcCHHHhcC---------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            777777777776655555433               66777777777777766555666677777777777777766666


Q ss_pred             cccCCC-CCCeecCCCCcCcc
Q 048194          512 SFGNLK-RLESLDLSMNNLSR  531 (558)
Q Consensus       512 ~l~~l~-~L~~L~L~~N~l~~  531 (558)
                      .+..++ +|+.|++++|++++
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEEC
T ss_pred             HHHhhhccCCEEEccCCCeec
Confidence            666663 67777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=239.94  Aligned_cols=136  Identities=26%  Similarity=0.321  Sum_probs=87.6

Q ss_pred             CCCCCCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcC
Q 048194           46 QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSD  125 (558)
Q Consensus        46 ~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  125 (558)
                      .|......|.|.++ |         +.+++.++. +|.  .+.  ++|++|++++|.+.+. .+..+.++++|++|++++
T Consensus        22 ~~~~~~~~C~~~~~-c---------~~~~~~l~~-iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~   85 (353)
T 2z80_A           22 SSNQASLSCDRNGI-C---------KGSSGSLNS-IPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTS   85 (353)
T ss_dssp             -----CCEECTTSE-E---------ECCSTTCSS-CCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT
T ss_pred             CCCccCCCCCCCeE-e---------eCCCCCccc-ccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCC
Confidence            35556677888876 5         345566653 333  222  4788888888887764 445678888888888888


Q ss_pred             CcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCc--cccCCCCCCEEeCccc
Q 048194          126 AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR--SMFEFPMLQQLQLANN  199 (558)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n  199 (558)
                      |.+++..|..|.++++|++|++++|.++ .++...++++++|++|++++|.+.+ +|.  .+..+++|++|++++|
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           86 NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred             CccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCC
Confidence            8887666777778888888888888777 4433246666777777777766663 332  4555666666666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=235.62  Aligned_cols=256  Identities=17%  Similarity=0.158  Sum_probs=193.0

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .++++|+++++.+++..+.  .+..+++|++|++++|.+.+. .+..+.++++|++|++++|.+++..+..+.++++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            6899999999999876665  689999999999999999876 6778999999999999999999555555899999999


Q ss_pred             Eecccccccccccc-hhhcCCCCccEEEccCC-ccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhch
Q 048194          145 LDFSFNQFSGSISS-IRWEHLLNLVCAVLSDN-SLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKR  222 (558)
Q Consensus       145 L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~  222 (558)
                      |++++|.++ .++. ..+.++++|++|++++| .+....+..+..+++|++|++++|.+++..|..+             
T Consensus       129 L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-------------  194 (353)
T 2z80_A          129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-------------  194 (353)
T ss_dssp             EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-------------
T ss_pred             EECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-------------
Confidence            999999998 5543 35889999999999998 4666667788899999999999999987777666             


Q ss_pred             hhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCC
Q 048194          223 VYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKN  302 (558)
Q Consensus       223 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~  302 (558)
                            ..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+.. +                   +....
T Consensus       195 ------~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l-------------------~~~~~  247 (353)
T 2z80_A          195 ------KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE-L-------------------STGET  247 (353)
T ss_dssp             ------TTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------C
T ss_pred             ------hccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc-c-------------------ccccc
Confidence                  78889999999999986 666556667889999999998887543322 1                   11223


Q ss_pred             CCCCCEEecCCCcccc----cCChhHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcc
Q 048194          303 QSQLQYLYLSENQISR----EIPNWIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRG  366 (558)
Q Consensus       303 ~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~  366 (558)
                      ...++.++++++.+.+    .+|..+..++.  |++|++++|.++.++..  ..+++|+.|++++|.+.+
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~--L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISG--LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTT--CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccC--CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            3445556666655543    24445554444  77777777766655543  236666666666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=6.9e-26  Score=238.60  Aligned_cols=261  Identities=25%  Similarity=0.260  Sum_probs=215.7

Q ss_pred             CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194          232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL  311 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l  311 (558)
                      .+++.|++++|.++ .+|... .  ++|++|++++|.++.. +.    .+++|+.|++++|+++.+|.  .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l-~--~~L~~L~L~~N~l~~l-p~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCL-P--AHITTLVIPDNNLTSL-PA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCC-C--TTCSEEEECSCCCSCC-CC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhh-C--CCCcEEEecCCCCCCC-CC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence            46899999999998 777432 2  7999999999998843 32    47899999999999999997  7789999999


Q ss_pred             CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCC
Q 048194          312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPA  391 (558)
Q Consensus       312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  391 (558)
                      ++|.+++ +|.   ..  ++|+.|++++|.++.++..  +++|+.|++++|.+++ +|..+.+|+.|++++|.++     
T Consensus       109 s~N~l~~-l~~---~l--~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~-----  174 (622)
T 3g06_A          109 FSNPLTH-LPA---LP--SGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLT-----  174 (622)
T ss_dssp             CSCCCCC-CCC---CC--TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-----
T ss_pred             cCCcCCC-CCC---CC--CCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCC-----
Confidence            9999975 444   22  3499999999999886653  6899999999999885 5667889999999999998     


Q ss_pred             CCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194          392 DTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF  471 (558)
Q Consensus       392 ~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L  471 (558)
                           .+|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. +|..                  +++|
T Consensus       175 -----~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~------------------~~~L  223 (622)
T 3g06_A          175 -----SLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL------------------PSGL  223 (622)
T ss_dssp             -----CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC------------------CTTC
T ss_pred             -----CCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC------------------CCCC
Confidence                 455   446789999999999985 443   24789999999999873 3422                  5789


Q ss_pred             eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194          472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN  551 (558)
Q Consensus       472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  551 (558)
                      ++|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|+.|++++|
T Consensus       224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            999999999986 44   55789999999999998 5675   6789999999999998 67888999999999999999


Q ss_pred             cCeeec
Q 048194          552 QLEGRF  557 (558)
Q Consensus       552 ~l~~~~  557 (558)
                      ++++.+
T Consensus       295 ~l~~~~  300 (622)
T 3g06_A          295 PLSERT  300 (622)
T ss_dssp             CCCHHH
T ss_pred             CCCCcC
Confidence            998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.1e-27  Score=229.95  Aligned_cols=234  Identities=19%  Similarity=0.163  Sum_probs=154.0

Q ss_pred             CCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceE
Q 048194          256 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC  334 (558)
Q Consensus       256 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  334 (558)
                      .++++.|++++|.+. ..+.. +..+++|++|++++|.++.+|. +..+++|++|++++|.+. .+|..+..        
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~--------  148 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIAS--------  148 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG--------
T ss_pred             ccceeEEEccCCCch-hcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhc--------
Confidence            355666666666665 33333 4445566666666666555555 555556666666665554 44544443        


Q ss_pred             EEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECc
Q 048194          335 LNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN  414 (558)
Q Consensus       335 L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~  414 (558)
                                      +++|+.|++++|.+.+.+|.....                     ..++..+..+++|++|+++
T Consensus       149 ----------------l~~L~~L~L~~n~~~~~~p~~~~~---------------------~~~~~~~~~l~~L~~L~L~  191 (328)
T 4fcg_A          149 ----------------LNRLRELSIRACPELTELPEPLAS---------------------TDASGEHQGLVNLQSLRLE  191 (328)
T ss_dssp             ----------------CTTCCEEEEEEETTCCCCCSCSEE---------------------EC-CCCEEESTTCCEEEEE
T ss_pred             ----------------CcCCCEEECCCCCCccccChhHhh---------------------ccchhhhccCCCCCEEECc
Confidence                            445555555555444333321110                     0122334456778888888


Q ss_pred             CCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCC
Q 048194          415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKS  494 (558)
Q Consensus       415 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  494 (558)
                      +|.++ .+|..+..+++|++|++++|.+++ +|..+.               .+++|++|++++|.+.+.+|..++.+++
T Consensus       192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~---------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          192 WTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH---------------HLPKLEELDLRGCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             EECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG---------------GCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred             CCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc---------------cCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence            88777 677777788888888888887774 343332               3777888888888877777778888888


Q ss_pred             CCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCe
Q 048194          495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       495 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~  554 (558)
                      |++|++++|.+.+.+|..+.++++|+.|+|++|++.+.+|..+.++++|+.+++..+.+.
T Consensus       255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            888888888887788888888888888888888888888888888888888888776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.7e-27  Score=226.71  Aligned_cols=240  Identities=21%  Similarity=0.277  Sum_probs=117.6

Q ss_pred             CCccceEeCCC----------CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCc-cchhhcCCCCCCEEe
Q 048194           54 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQ-ISSKLANISSLTYLN  122 (558)
Q Consensus        54 c~~~~~~c~~~----------~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~  122 (558)
                      |.|.++.|...          .++++|+++++.+....+.  .+..+++|++|++++|.+.... .+..+..+++|++|+
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            67888888642          2455555555555432222  3445555555555555544210 134444455555555


Q ss_pred             CcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCC
Q 048194          123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       123 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  202 (558)
                      +++|.+. .+|..+..+++|++|++++|.+++..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            5555554 344445555555555555555542222113455555555555555555444444555555555555555554


Q ss_pred             C-CCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC
Q 048194          203 G-SIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS  281 (558)
Q Consensus       203 ~-~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  281 (558)
                      + ..|..+                   ..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+.. +..+
T Consensus       164 ~~~~~~~~-------------------~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l  222 (306)
T 2z66_A          164 ENFLPDIF-------------------TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCL  222 (306)
T ss_dssp             GGEECSCC-------------------TTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTC
T ss_pred             cccchhHH-------------------hhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhh-ccCc
Confidence            3 233332                   44455555555555554 222234455555555555555554433322 4445


Q ss_pred             CCCCEEecCCCCCCCCC-C-CCCC-CCCCEEecCCCccc
Q 048194          282 PMLELLNLASCKLREIP-N-LKNQ-SQLQYLYLSENQIS  317 (558)
Q Consensus       282 ~~L~~L~l~~n~l~~l~-~-~~~~-~~L~~L~l~~n~l~  317 (558)
                      ++|+.|++++|+++..+ . +..+ ++|++|++++|++.
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            55555555555554322 2 4444 24555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=8.7e-26  Score=237.80  Aligned_cols=134  Identities=25%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             CCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEec
Q 048194          232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL  311 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l  311 (558)
                      ++|++|++++|.++ .+|.    .+++|++|++++|.+++...     .+++|+.|++++|+++.+|..  +++|++|++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL--PPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC--CTTCCEEEC
T ss_pred             CCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC--CCCCCEEEC
Confidence            44555555555544 3332    34555555555555543221     245556666666666655541  255666666


Q ss_pred             CCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCccc
Q 048194          312 SENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFT  386 (558)
Q Consensus       312 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~  386 (558)
                      ++|++++ +|..+     .+|+.|++++|.++.++  ..+++|+.|++++|.+++ +|..+.+|+.|++++|.++
T Consensus       149 s~N~l~~-l~~~~-----~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~  214 (622)
T 3g06_A          149 SDNQLAS-LPALP-----SELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT  214 (622)
T ss_dssp             CSSCCSC-CCCCC-----TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS
T ss_pred             cCCcCCC-cCCcc-----CCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCccc
Confidence            6666543 23211     12555555555555443  224555566666555542 3333344444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3e-28  Score=238.00  Aligned_cols=259  Identities=21%  Similarity=0.153  Sum_probs=182.9

Q ss_pred             CCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecC
Q 048194          233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS  312 (558)
Q Consensus       233 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~  312 (558)
                      +++..+++.+.+. ..+...+..+++|++|++++|.+++..+.. +..+++|+.|++++|+++.++.+..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHH-HTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHH-hhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECc
Confidence            3455555555554 333344445556666666666666443333 55566666666666665544445555556666666


Q ss_pred             CCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCC
Q 048194          313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD  392 (558)
Q Consensus       313 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  392 (558)
                      +|.++                          +...   .++|+.|++++|.+++..+..+.+|++|++++|.++      
T Consensus        89 ~n~l~--------------------------~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~------  133 (317)
T 3o53_A           89 NNYVQ--------------------------ELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT------  133 (317)
T ss_dssp             SSEEE--------------------------EEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC------
T ss_pred             CCccc--------------------------cccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC------
Confidence            65554                          3221   245555555555555554555566777777777766      


Q ss_pred             CccCCCCCCCCCCCCCCEEECcCCcCCccCCccc-ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccc
Q 048194          393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSI-AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIF  471 (558)
Q Consensus       393 ~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L  471 (558)
                         +..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..                 .+++|
T Consensus       134 ---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------~l~~L  193 (317)
T 3o53_A          134 ---MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------------VFAKL  193 (317)
T ss_dssp             ---SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------------CCTTC
T ss_pred             ---CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-----------------ccccC
Confidence               2345567788899999999999998777766 47899999999999998652211                 27899


Q ss_pred             eEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc-ccchhhhcCCCCCCEEeCcC
Q 048194          472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS-RAIPSQLASLYFLSYLNLSY  550 (558)
Q Consensus       472 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~  550 (558)
                      ++|++++|.+++.. ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..+++|+.+++++
T Consensus       194 ~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          194 KTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            99999999999754 45899999999999999999 68888999999999999999998 77888899999999998883

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=8.1e-30  Score=271.79  Aligned_cols=418  Identities=13%  Similarity=0.081  Sum_probs=285.4

Q ss_pred             CCEEEEEcCCCCcc---ccccCc----------ccccCCCCCCEEECCCCCCCCCccchhhcC-CCC-CCEEeCcCCc-C
Q 048194           65 GHVIGLDLSTESIS---GGIENA----------AILFSLHYLRSLNLARTSFNGTQISSKLAN-ISS-LTYLNLSDAG-F  128 (558)
Q Consensus        65 ~~v~~L~l~~~~~~---~~~~~~----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~-L~~L~L~~n~-l  128 (558)
                      +++++|+++++...   +..+..          .....+++|++|+|++|.+.+. .+..+.. ++. |++|++++|. +
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCc
Confidence            77999999875431   122210          0122789999999999988765 4555555 344 9999999986 2


Q ss_pred             cc-CCChhccCCCCCcEEeccccccccc----ccchhhcCCCCccEEEccCCccC----ccCCccccCCCCCCEEeCccc
Q 048194          129 AG-QIPVQISRMARLVALDFSFNQFSGS----ISSIRWEHLLNLVCAVLSDNSLD----GSIPRSMFEFPMLQQLQLANN  199 (558)
Q Consensus       129 ~~-~~p~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n  199 (558)
                      +. .++....++++|++|++++|.+++.    ++. ...++++|++|++++|.++    +.++..+.++++|++|++++|
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            21 1233345789999999999988754    222 3577899999999999987    334445567899999999999


Q ss_pred             cCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc--ccChhhhcCCCCCCEEEccCCcccccCCCcc
Q 048194          200 QFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG--TVQLDKILSLGNLAKLDLSYNSLAVDESSRN  277 (558)
Q Consensus       200 ~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  277 (558)
                      .+.+ ++..+                   ..+++|++|+++......  ......+..+++|+.|+++++... ..+. .
T Consensus       231 ~~~~-l~~~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~  288 (592)
T 3ogk_B          231 EILE-LVGFF-------------------KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-L  288 (592)
T ss_dssp             BGGG-GHHHH-------------------HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-G
T ss_pred             cHHH-HHHHH-------------------hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-H
Confidence            8874 44443                   778999999998632210  111234667889999999885332 2222 2


Q ss_pred             cCCCCCCCEEecCCCCCC--CCCC-CCCCCCCCEEecCCCcccc-cCChhHHhhccccceEEEcCC-----------ccc
Q 048194          278 YSFSPMLELLNLASCKLR--EIPN-LKNQSQLQYLYLSENQISR-EIPNWIWRVSVVGLHCLNLSH-----------NFL  342 (558)
Q Consensus       278 ~~~~~~L~~L~l~~n~l~--~l~~-~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~ls~-----------n~l  342 (558)
                      +..+++|++|++++|.++  .++. +..+++|++|++++ .+.+ .++.....++.  |++|++++           +.+
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~--L~~L~L~~g~~~~~~~~~~~~~  365 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQ--LKRLRIERGADEQGMEDEEGLV  365 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTT--CCEEEEECCCCSSTTSSTTCCC
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCC--CCEEEeecCccccccccccCcc
Confidence            667889999999999876  2323 67899999999994 4433 33333344444  99999993           455


Q ss_pred             cccCCC---CCCCccCEEEcccccCcccCC----CCCCCCcEEEcc----CCcccccCCCCCccCCCCCCCCCCCCCCEE
Q 048194          343 VGFQAP---YSIPALRFIDLISNQLRGNIH----QLPNNPIYIDFS----NNNFTSSIPADTVNGTLPDTFPRNCLLQTL  411 (558)
Q Consensus       343 ~~~~~~---~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~----~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L  411 (558)
                      ++....   ..+++|+.|+++.+.+++..+    ...++|+.|+++    .|.+++. |..   ..++..+..+++|++|
T Consensus       366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~---~~~~~~~~~~~~L~~L  441 (592)
T 3ogk_B          366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD---NGVRSLLIGCKKLRRF  441 (592)
T ss_dssp             CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH---HHHHHHHHHCTTCCEE
T ss_pred             CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH---HHHHHHHHhCCCCCEE
Confidence            543221   238999999998888875433    225689999997    4555521 000   0122225568899999


Q ss_pred             ECcCCc--CCccCCcccc-cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC-ch
Q 048194          412 DLNGNR--PQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI-LE  487 (558)
Q Consensus       412 ~l~~n~--l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~  487 (558)
                      +++.|.  +++..+..+. .+++|++|++++|.+++....              .....+++|++|++++|.+++.. +.
T Consensus       442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM--------------EFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH--------------HHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH--------------HHHhcCcccCeeeccCCCCcHHHHHH
Confidence            998644  6665555554 489999999999998753211              12244799999999999987553 34


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccc-cCCCCCCeecCCCC
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSF-GNLKRLESLDLSMN  527 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~N  527 (558)
                      .+..+++|++|++++|++++.....+ ..++.+....+..+
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            45679999999999999986544433 35677766666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.1e-25  Score=229.13  Aligned_cols=200  Identities=20%  Similarity=0.184  Sum_probs=113.1

Q ss_pred             CEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEcc
Q 048194           94 RSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS  173 (558)
Q Consensus        94 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  173 (558)
                      +.++.++..+..  +|..+.  +++++|+|++|.+++..|..|.++++|++|+|++|.++                    
T Consensus        57 ~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------------  112 (452)
T 3zyi_A           57 SKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------------  112 (452)
T ss_dssp             CEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred             cEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------------
Confidence            444554444443  333222  34555555555555444455555555555555555554                    


Q ss_pred             CCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhh
Q 048194          174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKI  253 (558)
Q Consensus       174 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  253 (558)
                           +..+..+..+++|++|++++|.+++..+..+                   ..+++|++|++++|.+. .++...+
T Consensus       113 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------~~l~~L~~L~L~~N~l~-~~~~~~~  167 (452)
T 3zyi_A          113 -----QIEVGAFNGLASLNTLELFDNWLTVIPSGAF-------------------EYLSKLRELWLRNNPIE-SIPSYAF  167 (452)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCSBCCTTTS-------------------SSCTTCCEEECCSCCCC-EECTTTT
T ss_pred             -----CcChhhccCcccCCEEECCCCcCCccChhhh-------------------cccCCCCEEECCCCCcc-eeCHhHH
Confidence                 3344444445555555555555443333322                   44455555555555554 4444455


Q ss_pred             cCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccce
Q 048194          254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLH  333 (558)
Q Consensus       254 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  333 (558)
                      ..+++|++|++++|...+..+...+..+++|+.|++++|+++.+|.+..+++|++|++++|.+.+..|..+..+..  |+
T Consensus       168 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~  245 (452)
T 3zyi_A          168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS--LK  245 (452)
T ss_dssp             TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTT--CC
T ss_pred             hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccC--CC
Confidence            5666666666666433333333336677778888888888887777888888888888888888777776665544  55


Q ss_pred             EEEcCCccccc
Q 048194          334 CLNLSHNFLVG  344 (558)
Q Consensus       334 ~L~ls~n~l~~  344 (558)
                      +|++++|.+++
T Consensus       246 ~L~L~~n~l~~  256 (452)
T 3zyi_A          246 KLWVMNSQVSL  256 (452)
T ss_dssp             EEECTTSCCCE
T ss_pred             EEEeCCCcCce
Confidence            55555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.1e-28  Score=237.30  Aligned_cols=247  Identities=21%  Similarity=0.241  Sum_probs=120.0

Q ss_pred             cCCCCCCCCCCCccceEeCCC-CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhc-------CC
Q 048194           44 LMQWRQSTDCCDWSGVDCDEA-GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLA-------NI  115 (558)
Q Consensus        44 ~~~w~~~~~~c~~~~~~c~~~-~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-------~l  115 (558)
                      ...|.....|+.+..+..... .+++.++++++.+  ..|.  .+...  |++|++++|.+....+|..+.       ++
T Consensus        21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l   94 (312)
T 1wwl_A           21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI   94 (312)
T ss_dssp             SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred             ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc
Confidence            445654444544444322111 3444555555555  2332  22222  555556555553322444443       45


Q ss_pred             CCCCEEeCcCCcCccCCChhc--cCCCCCcEEecccccccccccchhhcCC-----CCccEEEccCCccCccCCccccCC
Q 048194          116 SSLTYLNLSDAGFAGQIPVQI--SRMARLVALDFSFNQFSGSISSIRWEHL-----LNLVCAVLSDNSLDGSIPRSMFEF  188 (558)
Q Consensus       116 ~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l  188 (558)
                      ++|++|++++|.+++.+|..+  ..+++|++|++++|.+++. |. .++.+     ++|++|++++|.+.+..|..+..+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            666666666666655555544  5566666666666666533 32 23333     556666666666655555555556


Q ss_pred             CCCCEEeCccccCCCCC--CccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc--ccChhhhcCCCCCCEEEc
Q 048194          189 PMLQQLQLANNQFGGSI--PRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG--TVQLDKILSLGNLAKLDL  264 (558)
Q Consensus       189 ~~L~~L~l~~n~~~~~~--~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l  264 (558)
                      ++|++|++++|++.+..  +..+                 ....+++|++|++++|.+++  .++...+..+++|++|++
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~-----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISAL-----------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL  235 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHS-----------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred             CCCCEEECCCCCcCcchHHHHHH-----------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence            66666666666544321  1100                 00344555555555555542  222233345555555555


Q ss_pred             cCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCccc
Q 048194          265 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       265 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~  317 (558)
                      ++|.+.+..+...+..+++|+.|++++|+++.+|. +.  ++|++|++++|+++
T Consensus       236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC
T ss_pred             CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC
Confidence            55555544432223444555555555555554444 22  44444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=227.80  Aligned_cols=201  Identities=24%  Similarity=0.224  Sum_probs=119.6

Q ss_pred             CCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEc
Q 048194           93 LRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL  172 (558)
Q Consensus        93 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  172 (558)
                      .+.++.++..+..  +|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+. .++...+.++++|++|++
T Consensus        45 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSS--CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCc--CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            4456666666654  454443  56777777777777666666777777777777777766 332224566666666666


Q ss_pred             cCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhh
Q 048194          173 SDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK  252 (558)
Q Consensus       173 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  252 (558)
                      ++|.++...+..+..+++|++|++++|.+.+.                                            +...
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------------------------------------------~~~~  155 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--------------------------------------------PSYA  155 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE--------------------------------------------CTTT
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCccccc--------------------------------------------CHHH
Confidence            66666644444555566666666666655533                                            3333


Q ss_pred             hcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccc
Q 048194          253 ILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL  332 (558)
Q Consensus       253 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  332 (558)
                      +..+++|++|++++|...+..+...+..+++|+.|++++|+++.+|.+..+++|++|++++|++++..|..+..+..  |
T Consensus       156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L  233 (440)
T 3zyj_A          156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH--L  233 (440)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTT--C
T ss_pred             hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCcc--C
Confidence            44445555555554332223333335666677777777777777777777777888888887777666666555443  5


Q ss_pred             eEEEcCCccccc
Q 048194          333 HCLNLSHNFLVG  344 (558)
Q Consensus       333 ~~L~ls~n~l~~  344 (558)
                      ++|++++|.+++
T Consensus       234 ~~L~L~~n~l~~  245 (440)
T 3zyj_A          234 QKLWMIQSQIQV  245 (440)
T ss_dssp             CEEECTTCCCCE
T ss_pred             CEEECCCCceeE
Confidence            555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.4e-25  Score=230.33  Aligned_cols=226  Identities=21%  Similarity=0.187  Sum_probs=157.1

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcE
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVA  144 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  144 (558)
                      .+++.|+|++|++.+..+.  .+..+++|++|+|++|.+.+. .+..|.++++|++|+|++|.+++..+..|..+++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            3677777777777766555  677777777777777777665 5567777777777777777777555556777777777


Q ss_pred             EecccccccccccchhhcCCCCccEEEccCCccCccCC-ccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchh
Q 048194          145 LDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIP-RSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRV  223 (558)
Q Consensus       145 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~  223 (558)
                      |++++|.+. .++...+.++++|++|++++|...+.++ ..+..+++|++|++++|.+++. |..               
T Consensus       152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~---------------  214 (452)
T 3zyi_A          152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNL---------------  214 (452)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCC---------------
T ss_pred             EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccc---------------
Confidence            777777777 4433357777777777777743332333 3566777777777777777633 332               


Q ss_pred             hhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CC
Q 048194          224 YSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LK  301 (558)
Q Consensus       224 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~  301 (558)
                           ..+++|++|++++|.++ .++...+..+++|++|++++|++.+..+.. +..+++|+.|++++|+++.+|.  +.
T Consensus       215 -----~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          215 -----TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             -----TTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             -----cccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhc
Confidence                 66677777777777776 444466777777777777777777655554 6677777777777777776665  66


Q ss_pred             CCCCCCEEecCCCccc
Q 048194          302 NQSQLQYLYLSENQIS  317 (558)
Q Consensus       302 ~~~~L~~L~l~~n~l~  317 (558)
                      .+++|+.|++++|++.
T Consensus       288 ~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEccCCCcC
Confidence            6777777777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=227.75  Aligned_cols=224  Identities=22%  Similarity=0.203  Sum_probs=125.9

Q ss_pred             CEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEE
Q 048194           66 HVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVAL  145 (558)
Q Consensus        66 ~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  145 (558)
                      .++.|+|++|.+.+..+.  .+..+++|++|+|++|.+... .+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus        65 ~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            455666666666554444  456666666666666666554 44556666666666666666664444455666666666


Q ss_pred             ecccccccccccchhhcCCCCccEEEccCCc-cCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhh
Q 048194          146 DFSFNQFSGSISSIRWEHLLNLVCAVLSDNS-LDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVY  224 (558)
Q Consensus       146 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~  224 (558)
                      ++++|.+. .++...+.++++|++|++++|. +....+..+..+++|++|++++|.++ .+|..                
T Consensus       142 ~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~----------------  203 (440)
T 3zyj_A          142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNL----------------  203 (440)
T ss_dssp             ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCC----------------
T ss_pred             eCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccccc----------------
Confidence            66666665 3332245566666666666533 22222234555666666666666655 33321                


Q ss_pred             hcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCC
Q 048194          225 SCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKN  302 (558)
Q Consensus       225 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~  302 (558)
                          ..+++|++|++++|.++ .++...+..+++|++|++++|++.+..+.. +..+++|+.|++++|+++.+|.  +..
T Consensus       204 ----~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          204 ----TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             ----TTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             ----CCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChhHhcc
Confidence                45556666666666665 333345556666666666666665444433 5556666666666666665554  455


Q ss_pred             CCCCCEEecCCCcc
Q 048194          303 QSQLQYLYLSENQI  316 (558)
Q Consensus       303 ~~~L~~L~l~~n~l  316 (558)
                      +++|+.|++++|++
T Consensus       278 l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          278 LHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             ccCCCEEEcCCCCc
Confidence            56666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=215.69  Aligned_cols=249  Identities=23%  Similarity=0.255  Sum_probs=157.8

Q ss_pred             CCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCC-CCCCCC--CCCCCCCC
Q 048194          231 TQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-LREIPN--LKNQSQLQ  307 (558)
Q Consensus       231 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~l~~--~~~~~~L~  307 (558)
                      .+++++|++++|.++ .++...+..+++|++|++++|.+++..+.. +..+++|++|++++|. ++.++.  +..+++|+
T Consensus        31 ~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            346667777776666 444455666666666666666666544444 5556666666666664 555532  55566666


Q ss_pred             EEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccc
Q 048194          308 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTS  387 (558)
Q Consensus       308 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~  387 (558)
                      +|++++|.+.+..+..+..                        +++|++|++++|++.                      
T Consensus       109 ~L~l~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~----------------------  142 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRG------------------------LAALQYLYLQDNALQ----------------------  142 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTT------------------------CTTCCEEECCSSCCC----------------------
T ss_pred             EEECCCCcCCEECHhHhhC------------------------CcCCCEEECCCCccc----------------------
Confidence            6666666555443433333                        444555555444443                      


Q ss_pred             cCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhh
Q 048194          388 SIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKI  467 (558)
Q Consensus       388 ~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~  467 (558)
                              +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..               
T Consensus       143 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------  199 (285)
T 1ozn_A          143 --------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---------------  199 (285)
T ss_dssp             --------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT---------------
T ss_pred             --------ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC---------------
Confidence                    122334666777888888888777665666777888888888888877766666543               


Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcC--CCCCCE
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLAS--LYFLSY  545 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~  545 (558)
                      +++|++|++++|.+++..+..+..+++|++|++++|++.+..+.. .-...++.+..+.+.+....|..+.+  +..++.
T Consensus       200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~  278 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA  278 (285)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred             cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence            677888888888888766677888888888888888887543321 11233555667777787778877765  445555


Q ss_pred             EeCcCC
Q 048194          546 LNLSYN  551 (558)
Q Consensus       546 L~l~~n  551 (558)
                      .++.+|
T Consensus       279 ~~l~~C  284 (285)
T 1ozn_A          279 NDLQGC  284 (285)
T ss_dssp             GGSCCC
T ss_pred             HHhccC
Confidence            566555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4e-25  Score=212.59  Aligned_cols=221  Identities=19%  Similarity=0.160  Sum_probs=114.4

Q ss_pred             CEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEc
Q 048194          260 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL  337 (558)
Q Consensus       260 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  337 (558)
                      ++++.+++.++.. |.   ...++++.|++++|.++.++.  +..+++|++|++++|.+++..|..+..++.  |++|++
T Consensus        14 ~~~~c~~~~l~~i-p~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL--LEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSC-CT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT--CCEEEC
T ss_pred             eEEEcCcCCcccC-Cc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC--CCEEeC
Confidence            4455555555422 21   123456666666666655543  555556666666666555444444444333  444444


Q ss_pred             CCcc-ccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECc
Q 048194          338 SHNF-LVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN  414 (558)
Q Consensus       338 s~n~-l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~  414 (558)
                      ++|. +....+.  ..+++|++|++++|.                     ++         +..|..+..+++|++|+++
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~---------~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG---------------------LQ---------ELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSC---------------------CC---------CCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCc---------------------CC---------EECHhHhhCCcCCCEEECC
Confidence            4443 3333211  113333333333333                     22         1234445555666666666


Q ss_pred             CCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCC
Q 048194          415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKS  494 (558)
Q Consensus       415 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  494 (558)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..               +++|++|++++|.+++..+..++.+++
T Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------------LHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT---------------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC---------------ccccCEEECCCCcccccCHhHccCccc
Confidence            66666544455566666666666666665433333322               555666666666666555555666666


Q ss_pred             CCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       495 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      |++|++++|++++..+..+..+++|+.|++++|++..
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            6666666666664444445566666666666666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.6e-27  Score=232.75  Aligned_cols=248  Identities=20%  Similarity=0.200  Sum_probs=136.5

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL  167 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  167 (558)
                      ..+++|++|++++|.+.+. .|..+.++++|++|++++|.+++..+  +..+++|++|++++|.+++      +...+  
T Consensus        31 ~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~------l~~~~--   99 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGP--   99 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE------EEECT--
T ss_pred             ccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc------ccCCC--
Confidence            3444555555555555554 44455555555555555555553332  5555555555555555541      11224  


Q ss_pred             cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194          168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT  247 (558)
Q Consensus       168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~  247 (558)
                                            +|++|++++|.+++..+                      ..+++|++|++++|.++ .
T Consensus       100 ----------------------~L~~L~l~~n~l~~~~~----------------------~~~~~L~~L~l~~N~l~-~  134 (317)
T 3o53_A          100 ----------------------SIETLHAANNNISRVSC----------------------SRGQGKKNIYLANNKIT-M  134 (317)
T ss_dssp             ----------------------TCCEEECCSSCCSEEEE----------------------CCCSSCEEEECCSSCCC-S
T ss_pred             ----------------------CcCEEECCCCccCCcCc----------------------cccCCCCEEECCCCCCC-C
Confidence                                  44444454444443222                      22344555555555554 2


Q ss_pred             cChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhh
Q 048194          248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRV  327 (558)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  327 (558)
                      ++...+..+++|++|++++|.+.+..+......+++|+.|++++|.++.++....+++|++|++++|++++ +|..+..+
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  213 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSA  213 (317)
T ss_dssp             GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred             ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-chhhhccc
Confidence            22234445555666666666555444443233556677777777776666665557788888888888764 33334433


Q ss_pred             ccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCC
Q 048194          328 SVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL  407 (558)
Q Consensus       328 ~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~  407 (558)
                      +                        +|+.|++++|+++                               .+|..+..+++
T Consensus       214 ~------------------------~L~~L~L~~N~l~-------------------------------~l~~~~~~l~~  238 (317)
T 3o53_A          214 A------------------------GVTWISLRNNKLV-------------------------------LIEKALRFSQN  238 (317)
T ss_dssp             T------------------------TCSEEECTTSCCC-------------------------------EECTTCCCCTT
T ss_pred             C------------------------cccEEECcCCccc-------------------------------chhhHhhcCCC
Confidence            3                        3333333333332                               34555666777


Q ss_pred             CCEEECcCCcCC-ccCCcccccCCCCCEEECCCC-cCcccCC
Q 048194          408 LQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNN-QFSDKFP  447 (558)
Q Consensus       408 L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n-~i~~~~p  447 (558)
                      |+.|++++|.+. +.++..+..+++|+.+++.++ .+.+..|
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            888888888887 567777777888888877743 3444333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.1e-28  Score=259.72  Aligned_cols=443  Identities=13%  Similarity=0.036  Sum_probs=233.7

Q ss_pred             CCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCC-c-c------------chhhcCCCC
Q 048194           52 DCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGT-Q-I------------SSKLANISS  117 (558)
Q Consensus        52 ~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~-~------------~~~~~~l~~  117 (558)
                      .|+.|.++..   ...+.++++.+.... ...  .+..+++|++|+++++..... . .            +.....+++
T Consensus        33 vck~W~~~~~---~~~~~l~~~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~  106 (594)
T 2p1m_B           33 VCKSWYEIER---WCRRKVFIGNCYAVS-PAT--VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW  106 (594)
T ss_dssp             SCHHHHHHHH---HHCCEEEESSTTSSC-HHH--HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhh---hhceEEeeccccccC-HHH--HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence            3456877622   223455665543321 112  567889999999998753211 0 1            122356889


Q ss_pred             CCEEeCcCCcCccCCChhcc-CCCCCcEEecccc-ccccc-ccchhhcCCCCccEEEccCCccCccCCcccc----CCCC
Q 048194          118 LTYLNLSDAGFAGQIPVQIS-RMARLVALDFSFN-QFSGS-ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF----EFPM  190 (558)
Q Consensus       118 L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~  190 (558)
                      |++|++++|.+++..+..+. .+++|++|++++| .++.. ++. ...++++|++|++++|.+++..+..+.    .+++
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            99999999998877666665 6899999999988 45432 233 355789999999999987765444443    6779


Q ss_pred             CCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcc-
Q 048194          191 LQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL-  269 (558)
Q Consensus       191 L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-  269 (558)
                      |++|++++|.  +.+...              .+......+++|++|++++|...+.++ ..+..+++|++|++..+.. 
T Consensus       186 L~~L~l~~~~--~~~~~~--------------~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~  248 (594)
T 2p1m_B          186 LVSLNISCLA--SEVSFS--------------ALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAE  248 (594)
T ss_dssp             CCEEECTTCC--SCCCHH--------------HHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCC
T ss_pred             CcEEEecccC--CcCCHH--------------HHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCc
Confidence            9999999886  122111              011111456889999998883322333 4567788899998765532 


Q ss_pred             ------cccCCCcccCCCCCCCEE-ecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChh-HHhhccccceEEEcCCc
Q 048194          270 ------AVDESSRNYSFSPMLELL-NLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNW-IWRVSVVGLHCLNLSHN  340 (558)
Q Consensus       270 ------~~~~~~~~~~~~~~L~~L-~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~ls~n  340 (558)
                            .+. +.. +..+++|+.+ .+.+.....++. +..+++|++|++++|.+++..... +..+  ++|++|++++|
T Consensus       249 ~~~~~~~~l-~~~-l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~--~~L~~L~l~~~  324 (594)
T 2p1m_B          249 VRPDVYSGL-SVA-LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC--PKLQRLWVLDY  324 (594)
T ss_dssp             CCHHHHHHH-HHH-HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC--TTCCEEEEEGG
T ss_pred             cchhhHHHH-HHH-HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC--CCcCEEeCcCc
Confidence                  111 112 5567777777 343333334444 345677778888777755332222 2223  33777777766


Q ss_pred             cccccCCC--C-CCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCc
Q 048194          341 FLVGFQAP--Y-SIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNR  417 (558)
Q Consensus       341 ~l~~~~~~--~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~  417 (558)
                       +.+....  . .+++|+.|++..+.-.|            ....+.+++.        .+......+++|++|+++.+.
T Consensus       325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------~~~~~~l~~~--------~l~~l~~~~~~L~~L~~~~~~  383 (594)
T 2p1m_B          325 -IEDAGLEVLASTCKDLRELRVFPSEPFV------------MEPNVALTEQ--------GLVSVSMGCPKLESVLYFCRQ  383 (594)
T ss_dssp             -GHHHHHHHHHHHCTTCCEEEEECSCTTC------------SSCSSCCCHH--------HHHHHHHHCTTCCEEEEEESC
T ss_pred             -cCHHHHHHHHHhCCCCCEEEEecCcccc------------cccCCCCCHH--------HHHHHHHhchhHHHHHHhcCC
Confidence             3211111  1 25666666663321000            0001111100        000000123445555555555


Q ss_pred             CCccCCcccc-cCCCCCEEECC--C----CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhc
Q 048194          418 PQGTVPKSIA-KCKMLEVLNLG--N----NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVG  490 (558)
Q Consensus       418 l~~~~~~~l~-~l~~L~~L~l~--~----n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  490 (558)
                      +++..+..+. .+++|+.|+++  +    +.+++. |..         .........+++|+.|++++ .+++..+..++
T Consensus       384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~---------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~  452 (594)
T 2p1m_B          384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PLD---------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG  452 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CTH---------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred             cCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-chh---------hHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence            5544333333 35556665555  2    222210 000         00001123345555555554 44433333333


Q ss_pred             c-cCCCCeeeCcCCcCcccccccc-cCCCCCCeecCCCCcCcccchh-hhcCCCCCCEEeCcCCcCe
Q 048194          491 L-LKSLYGLNLSHNALTGSIPSSF-GNLKRLESLDLSMNNLSRAIPS-QLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       491 ~-l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~n~l~  554 (558)
                      . +++|+.|++++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|++|++++|+++
T Consensus       453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            3 5555566665555554433333 4455556666665555433332 2233555556666555553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.4e-27  Score=229.96  Aligned_cols=251  Identities=22%  Similarity=0.151  Sum_probs=203.8

Q ss_pred             cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcC-ccCCChhcc-------CCCCCcEEeccccccccccc
Q 048194           86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGF-AGQIPVQIS-------RMARLVALDFSFNQFSGSIS  157 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~~~~~~~  157 (558)
                      .+...++|++|++++|.+  . +|..+...  |++|++++|.+ ...+|..+.       ++++|++|++++|.+++.+|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            345677899999999999  3 77766654  89999999998 445777665       79999999999999997776


Q ss_pred             chh-hcCCCCccEEEccCCccCccCCccccCC-----CCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCC
Q 048194          158 SIR-WEHLLNLVCAVLSDNSLDGSIPRSMFEF-----PMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT  231 (558)
Q Consensus       158 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~  231 (558)
                      ... +..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+..+..+                   ..+
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-------------------~~l  172 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-------------------RVF  172 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-------------------CCC
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-------------------ccC
Confidence            522 38999999999999999976 8777776     999999999999998777766                   889


Q ss_pred             CCCCEEEcccccCCcccCh-hh--hcCCCCCCEEEccCCccccc--CCCcccCCCCCCCEEecCCCCCCCCC---CCCCC
Q 048194          232 QKLTPLLLSSNNLNGTVQL-DK--ILSLGNLAKLDLSYNSLAVD--ESSRNYSFSPMLELLNLASCKLREIP---NLKNQ  303 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~l~~l~---~~~~~  303 (558)
                      ++|++|++++|++.+.++. ..  +..+++|++|++++|.+++.  .+...+..+++|+.|++++|+++..+   .+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            9999999999998765321 22  37899999999999999842  22233457899999999999999644   26778


Q ss_pred             CCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcc
Q 048194          304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRG  366 (558)
Q Consensus       304 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~  366 (558)
                      ++|++|++++|+++ .+|..+.    ++|++|++++|.+++.+....+++|+.|++++|.+++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~----~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC----SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc----CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            99999999999997 7777665    4599999999999988554458889999998888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.2e-24  Score=207.32  Aligned_cols=217  Identities=20%  Similarity=0.248  Sum_probs=140.4

Q ss_pred             CCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCcc
Q 048194           51 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAG  130 (558)
Q Consensus        51 ~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  130 (558)
                      .++|.|.|+.|...+.++.+++++++++. +|.  .+.  +++++|++++|.+... .+..|.++++|++|++++|.++.
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~   75 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQT   75 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCe
Confidence            58999999988655667788888888774 333  222  5788888888887765 45567778888888888888774


Q ss_pred             CCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCcccc
Q 048194          131 QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSN  210 (558)
Q Consensus       131 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  210 (558)
                      ..+..|.++++|++|++++|.+. .++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+    
T Consensus        76 i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----  150 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----  150 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred             eChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----
Confidence            44445677777777777777777 3332245666667777776666665555555666666666666666553333    


Q ss_pred             ccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecC
Q 048194          211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLA  290 (558)
Q Consensus       211 ~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~  290 (558)
                                                              ..+..+++|++|++++|.++...+.. +..+++|+.|+++
T Consensus       151 ----------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~  189 (270)
T 2o6q_A          151 ----------------------------------------GVFDKLTSLKELRLYNNQLKRVPEGA-FDKLTELKTLKLD  189 (270)
T ss_dssp             ----------------------------------------TTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECC
T ss_pred             ----------------------------------------hHccCCcccceeEecCCcCcEeChhH-hccCCCcCEEECC
Confidence                                                    23344444444555544444333322 5555666666666


Q ss_pred             CCCCCCCCC--CCCCCCCCEEecCCCccccc
Q 048194          291 SCKLREIPN--LKNQSQLQYLYLSENQISRE  319 (558)
Q Consensus       291 ~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~  319 (558)
                      +|+++.+|.  +..+++|+.|++++|++...
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            666666655  66777888888888876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=6.2e-26  Score=234.28  Aligned_cols=235  Identities=23%  Similarity=0.172  Sum_probs=172.6

Q ss_pred             CCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEE
Q 048194          257 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN  336 (558)
Q Consensus       257 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  336 (558)
                      ++|++|++++|.+.+..+.. +..+++|+.|++++|.++.++.+..+++|++|++++|.+++                  
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------------------   94 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------------------   94 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------------------
T ss_pred             CCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------------------
Confidence            36667777776666544433 56666666666666666544445566666666666666543                  


Q ss_pred             cCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCC
Q 048194          337 LSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN  416 (558)
Q Consensus       337 ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n  416 (558)
                              .+.   .++|+.|++++|.+++..+..+++|+.|++++|.++         +..|..++.+++|+.|++++|
T Consensus        95 --------l~~---~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           95 --------LLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT---------MLRDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             --------EEE---CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC---------SGGGBCGGGGSSEEEEECTTS
T ss_pred             --------CCC---CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCC---------CCCchhhcCCCCCCEEECCCC
Confidence                    221   244555555555555444444556666667776666         345667788899999999999


Q ss_pred             cCCccCCcccc-cCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCC
Q 048194          417 RPQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSL  495 (558)
Q Consensus       417 ~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  495 (558)
                      .+++..|..+. .+++|+.|++++|.+++..+..                 .+++|+.|+|++|.+++..+ .+..+++|
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L  216 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGV  216 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----------------CCTTCCEEECCSSCCCEECG-GGGGGTTC
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCccccccccc-----------------cCCCCCEEECCCCCCCCCCH-hHcCCCCc
Confidence            99988888776 7999999999999998663322                 27899999999999997554 58999999


Q ss_pred             CeeeCcCCcCcccccccccCCCCCCeecCCCCcCc-ccchhhhcCCCCCCEEeCc
Q 048194          496 YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS-RAIPSQLASLYFLSYLNLS  549 (558)
Q Consensus       496 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~  549 (558)
                      +.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       217 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999999999 47888999999999999999998 6778888888888888775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.7e-25  Score=228.46  Aligned_cols=235  Identities=20%  Similarity=0.181  Sum_probs=132.3

Q ss_pred             CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeC
Q 048194          117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQL  196 (558)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  196 (558)
                      +|++|+|++|.+++..|..|..+++|++|+|++|.+++..+   +..+++|++|++++|.+++. |    ..++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-C----CCCCcCEEEC
Confidence            45555555555554444455555555555555555543222   44555555555555555422 1    1255666666


Q ss_pred             ccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCc
Q 048194          197 ANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSR  276 (558)
Q Consensus       197 ~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  276 (558)
                      ++|.+++..+                      ..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..
T Consensus       107 ~~N~l~~~~~----------------------~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (487)
T 3oja_A          107 ANNNISRVSC----------------------SRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (487)
T ss_dssp             CSSCCCCEEE----------------------CCCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cCCcCCCCCc----------------------cccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHH
Confidence            6665554332                      2334566666666666533 2234555666666666666666555544


Q ss_pred             ccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCE
Q 048194          277 NYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRF  356 (558)
Q Consensus       277 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~  356 (558)
                      ....+++|+.|++++|.++.+|....+++|++|++++|.+++. |..+..++.  |+.|++++|.++             
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~--L~~L~Ls~N~l~-------------  227 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAG--VTWISLRNNKLV-------------  227 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTT--CSEEECTTSCCC-------------
T ss_pred             HhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC-CHhHcCCCC--ccEEEecCCcCc-------------
Confidence            2335677777777777777666655678888888888888753 333444333  444444444433             


Q ss_pred             EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCC-ccCCcccccCCCCCEE
Q 048194          357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQ-GTVPKSIAKCKMLEVL  435 (558)
Q Consensus       357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L  435 (558)
                                                              .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.+
T Consensus       228 ----------------------------------------~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          228 ----------------------------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             ----------------------------------------EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             ----------------------------------------ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence                                                    23444555666777777777766 4555566666666666


Q ss_pred             ECC
Q 048194          436 NLG  438 (558)
Q Consensus       436 ~l~  438 (558)
                      ++.
T Consensus       268 ~~~  270 (487)
T 3oja_A          268 AKQ  270 (487)
T ss_dssp             HHH
T ss_pred             ecc
Confidence            654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=3.1e-28  Score=259.69  Aligned_cols=417  Identities=16%  Similarity=0.130  Sum_probs=239.3

Q ss_pred             CCEEEEEcCCCCcccccc---C----------cccccCCCCCCEEECCCCCCCCCccchhhc-CCCCCCEEeCcCC-cCc
Q 048194           65 GHVIGLDLSTESISGGIE---N----------AAILFSLHYLRSLNLARTSFNGTQISSKLA-NISSLTYLNLSDA-GFA  129 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~---~----------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n-~l~  129 (558)
                      +++++++++++.......   .          ......+++|++|++++|.+++. .+..+. .+++|++|++++| .++
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCC
Confidence            678999999875322111   0          00234688999999999998776 455554 7999999999999 555


Q ss_pred             cC-CChhccCCCCCcEEecccccccccccc---hhhcCCCCccEEEccCCc--cCcc-CCccccCCCCCCEEeCccccCC
Q 048194          130 GQ-IPVQISRMARLVALDFSFNQFSGSISS---IRWEHLLNLVCAVLSDNS--LDGS-IPRSMFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       130 ~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~~~  202 (558)
                      .. ++..+.++++|++|++++|.+++..+.   .....+++|++|++++|.  +... ++.....+++|++|++++|...
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            32 444555899999999999998754322   123467899999999986  2211 1222345799999999998332


Q ss_pred             CCCCccccccccchhhhhchhhhcccCCCCCCCEEEccccc-------CCcccChhhhcCCCCCCEE-EccCCcccccCC
Q 048194          203 GSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNN-------LNGTVQLDKILSLGNLAKL-DLSYNSLAVDES  274 (558)
Q Consensus       203 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~  274 (558)
                      +.++..+                   ..+++|++|+++.+.       +. .++ ..+.++++|+.| .+...... ..+
T Consensus       225 ~~l~~~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~-~l~-~~l~~~~~L~~Ls~~~~~~~~-~l~  282 (594)
T 2p1m_B          225 EKLATLL-------------------QRAPQLEELGTGGYTAEVRPDVYS-GLS-VALSGCKELRCLSGFWDAVPA-YLP  282 (594)
T ss_dssp             HHHHHHH-------------------HHCTTCSEEECSBCCCCCCHHHHH-HHH-HHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred             HHHHHHH-------------------hcCCcceEcccccccCccchhhHH-HHH-HHHhcCCCcccccCCcccchh-hHH
Confidence            2244333                   678899999976543       32 222 357889999999 34432221 111


Q ss_pred             CcccCCCCCCCEEecCCCCCCC--CCC-CCCCCCCCEEecCCCcccccCChhH-HhhccccceEEEcCC---------cc
Q 048194          275 SRNYSFSPMLELLNLASCKLRE--IPN-LKNQSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSH---------NF  341 (558)
Q Consensus       275 ~~~~~~~~~L~~L~l~~n~l~~--l~~-~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~ls~---------n~  341 (558)
                       ..+..+++|++|++++|.++.  ++. +..+++|++|++++| +.+.....+ ..++  +|++|++++         +.
T Consensus       283 -~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~--~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          283 -AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK--DLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             -GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT--TCCEEEEECSCTTCSSCSSC
T ss_pred             -HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC--CCCEEEEecCcccccccCCC
Confidence             113467899999999999772  333 668899999999998 443222222 2334  499999944         33


Q ss_pred             ccccCCC---CCCCccCEEEcccccCcccCC----CCCCCCcEEEcc--C----CcccccCCCCCccCCCCCCCCCCCCC
Q 048194          342 LVGFQAP---YSIPALRFIDLISNQLRGNIH----QLPNNPIYIDFS--N----NNFTSSIPADTVNGTLPDTFPRNCLL  408 (558)
Q Consensus       342 l~~~~~~---~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~--~----n~~~~~~~~~~~~~~~p~~~~~~~~L  408 (558)
                      +++....   ..+++|+.|.+..+.+++...    ...++|+.|+++  +    +.+++. |.   ...++..+..+++|
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~---~~~~~~l~~~~~~L  434 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-PL---DIGFGAIVEHCKDL  434 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-CT---HHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-ch---hhHHHHHHhhCCCc
Confidence            4332211   127888888877777764322    123456666666  2    222200 00   00011112334455


Q ss_pred             CEEECcCCcCCccCCccccc-CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          409 QTLDLNGNRPQGTVPKSIAK-CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       409 ~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      +.|++++ .+++..+..+.. +++|+.|++++|.+++..+..              ....+++|++|++++|.+++....
T Consensus       435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~--------------l~~~~~~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH--------------VLSGCDSLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH--------------HHHHCTTCCEEEEESCSCCHHHHH
T ss_pred             cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH--------------HHhcCCCcCEEECcCCCCcHHHHH
Confidence            5555544 444333333333 555555555555544321111              112345555555555555432222


Q ss_pred             -hhcccCCCCeeeCcCCcCcccccccc-cCCCCCCeecCCCC
Q 048194          488 -DVGLLKSLYGLNLSHNALTGSIPSSF-GNLKRLESLDLSMN  527 (558)
Q Consensus       488 -~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~N  527 (558)
                       .+..+++|++|++++|+++......+ ..+++|+...+..+
T Consensus       500 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence             22335555555555555543322222 33444444444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.6e-23  Score=198.83  Aligned_cols=117  Identities=22%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             CCCCCCCCCEEECcCCcCCcc-CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccce----EEE
Q 048194          401 TFPRNCLLQTLDLNGNRPQGT-VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFT----SID  475 (558)
Q Consensus       401 ~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~----~L~  475 (558)
                      .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+.               .+++|+    +|+
T Consensus       119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------~l~~L~~l~l~L~  183 (276)
T 2z62_A          119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR---------------VLHQMPLLNLSLD  183 (276)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH---------------HHHTCTTCCEEEE
T ss_pred             hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh---------------hhhhccccceeee
Confidence            456666677777777776653 466666677777777777766654333221               133333    666


Q ss_pred             CCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194          476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       476 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  533 (558)
                      +++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus       184 ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          184 LSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            666666654433333 335666666666666444444566666666666666665443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.7e-22  Score=194.01  Aligned_cols=202  Identities=25%  Similarity=0.167  Sum_probs=148.0

Q ss_pred             cCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCE
Q 048194          278 YSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRF  356 (558)
Q Consensus       278 ~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~  356 (558)
                      +..+++++.++++++.++.+|. +  .++++.|++++|.+++..+..+..+..  |++|++++|.+++......+++|+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTR--LTQLNLDRAELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTT--CCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCC--CCEEECCCCccCcccCCCCCCcCCE
Confidence            4556777778888777777776 3  267888888888887766666766655  7888888877776655444666666


Q ss_pred             EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194          357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN  436 (558)
Q Consensus       357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  436 (558)
                      |++++|++.                               .+|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        82 L~Ls~N~l~-------------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           82 LDLSHNQLQ-------------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             EECCSSCCS-------------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             EECCCCcCC-------------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence            666666654                               4566667777788888888888766667777888888888


Q ss_pred             CCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCC
Q 048194          437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL  516 (558)
Q Consensus       437 l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  516 (558)
                      +++|.+++..+..+.               .+++|+.|++++|+++...+..|..+++|+.|++++|+++ .+|..+..+
T Consensus       131 L~~N~l~~~~~~~~~---------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~  194 (290)
T 1p9a_G          131 LKGNELKTLPPGLLT---------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (290)
T ss_dssp             CTTSCCCCCCTTTTT---------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             CCCCCCCccChhhcc---------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence            888887755444332               2677888888888887666666777888888888888887 677777777


Q ss_pred             CCCCeecCCCCcCc
Q 048194          517 KRLESLDLSMNNLS  530 (558)
Q Consensus       517 ~~L~~L~L~~N~l~  530 (558)
                      .+|+.|+|++|++.
T Consensus       195 ~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          195 HLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             ccCCeEEeCCCCcc
Confidence            88888888888775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.8e-22  Score=192.94  Aligned_cols=207  Identities=20%  Similarity=0.249  Sum_probs=169.0

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      ++|++|++++|.+.+. .+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+. .+.++++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred             CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEE
Confidence            4799999999998875 556788999999999999999877777889999999999999999844444 68889999999


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCCC-CCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGS-IPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ  249 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  249 (558)
                      ++++|.+.+..+..+..+++|++|++++|.+++. +|..+                   ..+++|++|++++|+++ .++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-------------------~~l~~L~~L~Ls~N~l~-~~~  165 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQ-SIY  165 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-------------------GGCTTCCEEECCSSCCC-EEC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh-------------------ccCCCCCEEECCCCCCC-cCC
Confidence            9999999876666788999999999999998763 46655                   77889999999999988 455


Q ss_pred             hhhhcCCCCCC----EEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCC
Q 048194          250 LDKILSLGNLA----KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIP  321 (558)
Q Consensus       250 ~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~  321 (558)
                      ...+..+++|+    +|++++|.+.+..+.. +. ..+|+.|++++|+++.+|.  +..+++|+.|++++|++.+..+
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccc-cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            45566555555    8999999998655443 33 3489999999999998887  6889999999999999876554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.1e-23  Score=200.71  Aligned_cols=225  Identities=19%  Similarity=0.167  Sum_probs=154.3

Q ss_pred             CCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcC
Q 048194          259 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS  338 (558)
Q Consensus       259 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls  338 (558)
                      +..+++..+.+.+...   ...+++|+.|++.+|.++.++.+..+++|++|++++|.+.+ + ..+..+..  |++|+++
T Consensus        21 l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~--L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTN--LTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTT--CCEEECT
T ss_pred             HHHHHhcCcccccccc---cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c-hhhcCCCC--CCEEECC
Confidence            3445555555543322   44677888888888888888878888888888888888864 2 24444443  6666666


Q ss_pred             CccccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCC
Q 048194          339 HNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGN  416 (558)
Q Consensus       339 ~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n  416 (558)
                      +|.+++..+.  ..+++|++|++++|+++                              +..+..+..+++|++|++++|
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ------------------------------SLPDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCC------------------------------CCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCC------------------------------ccCHHHhccCCCCCEEECCCC
Confidence            6666655443  22555555555555443                              233445677778888888888


Q ss_pred             cCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCC
Q 048194          417 RPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY  496 (558)
Q Consensus       417 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  496 (558)
                      .+++..+..+..+++|++|++++|.+++..+..+..               +++|++|++++|.+++..+..++.+++|+
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK---------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC---------------CccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            888666666778888888888888887655544433               77888888888888877766777888888


Q ss_pred             eeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCC
Q 048194          497 GLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF  542 (558)
Q Consensus       497 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  542 (558)
                      .|++++|++.+.       ++.|+.|+++.|+++|.+|..++.+..
T Consensus       209 ~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          209 YIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             EEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             EEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            888888877643       456778888888888888877766554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=5.9e-22  Score=188.64  Aligned_cols=201  Identities=24%  Similarity=0.251  Sum_probs=130.4

Q ss_pred             CCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCc
Q 048194          118 LTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLA  197 (558)
Q Consensus       118 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  197 (558)
                      .++++++++.++ .+|..+.  +++++|++++|.++ .++...+.++++|++|++++|.++...+..+..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            344444444444 3333222  34444444444444 2221134445555555555555443333334556666666666


Q ss_pred             cccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcc
Q 048194          198 NNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRN  277 (558)
Q Consensus       198 ~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  277 (558)
                      +|.+++..+..+                   ..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+.. 
T Consensus        94 ~n~l~~~~~~~~-------------------~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-  152 (270)
T 2o6q_A           94 DNKLQALPIGVF-------------------DQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGV-  152 (270)
T ss_dssp             SSCCCCCCTTTT-------------------TTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT-
T ss_pred             CCcCCcCCHhHc-------------------ccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhH-
Confidence            666654443333                   55666666666666666 444456778888999999999888655444 


Q ss_pred             cCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCcccccc
Q 048194          278 YSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF  345 (558)
Q Consensus       278 ~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  345 (558)
                      +..+++|+.|++++|+++.++.  +..+++|++|++++|++++..+..+..++.  |+.|++++|.+...
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK--LKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCBCCS
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC--CCEEEecCCCeeCC
Confidence            8889999999999999998887  889999999999999998665555666665  99999999988643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.6e-22  Score=191.03  Aligned_cols=203  Identities=21%  Similarity=0.184  Sum_probs=166.9

Q ss_pred             cccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCC
Q 048194           86 ILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLL  165 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  165 (558)
                      .+..++++++++++++.++.  +|..+.  +++++|++++|.+++..+..|.++++|++|++++|.++ .++.  .+.++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCT
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCC
Confidence            36778888999998888876  555443  68899999999998777788889999999999999888 4443  36788


Q ss_pred             CccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCC
Q 048194          166 NLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLN  245 (558)
Q Consensus       166 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~  245 (558)
                      +|++|++++|.+. .+|..+..+++|++|++++|++++..+..+                   ..+++|++|++++|+++
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-------------------~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-------------------RGLGELQELYLKGNELK  137 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-------------------TTCTTCCEEECTTSCCC
T ss_pred             cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH-------------------cCCCCCCEEECCCCCCC
Confidence            9999999999888 678888889999999999999886666655                   78889999999999888


Q ss_pred             cccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCccc
Q 048194          246 GTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       246 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~  317 (558)
                       .++...+..+++|++|++++|+++...+ ..+..+++|+.|++++|+++.+|. +....+|+.+++++|++.
T Consensus       138 -~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          138 -TLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -CCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -ccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence             6666778888999999999999885444 337788899999999999998888 777788999999998875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.5e-21  Score=183.76  Aligned_cols=179  Identities=22%  Similarity=0.203  Sum_probs=121.0

Q ss_pred             cCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCC
Q 048194          354 LRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE  433 (558)
Q Consensus       354 L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  433 (558)
                      .+.++++++.+.......+.+++.|++++|.+.         +..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   86 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLA---------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG   86 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCC---------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CeEEecCCCCccccCCCCCCCCCEEEccCCCcC---------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence            344555555544333334455666666666665         23444567777777777777777766666677777777


Q ss_pred             EEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc
Q 048194          434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF  513 (558)
Q Consensus       434 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  513 (558)
                      +|++++|.+++..+..+..               +++|++|++++|.+++..+..|..+++|++|++++|++++..+..|
T Consensus        87 ~L~L~~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  151 (251)
T 3m19_A           87 TLGLANNQLASLPLGVFDH---------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF  151 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTT---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             EEECCCCcccccChhHhcc---------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence            7777777777554444332               6777777777777776666666777777777777777775555567


Q ss_pred             cCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCeee
Q 048194          514 GNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       514 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  556 (558)
                      ..+++|+.|+|++|++++..+..+..+++|++|++++|++++.
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7777777777777777766666777777777777777777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.4e-21  Score=186.12  Aligned_cols=220  Identities=21%  Similarity=0.173  Sum_probs=163.8

Q ss_pred             CCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccc
Q 048194          283 MLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISN  362 (558)
Q Consensus       283 ~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n  362 (558)
                      .+..+++.++.+..+.....+++|+.|++++|.+.. ++ .+..++.  |++|++++|.+++......+++|++|++++|
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~--L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQ-GIQYLPN--VRYLALGGNKLHDISALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-CT-TGGGCTT--CCEEECTTSCCCCCGGGTTCTTCCEEECTTS
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCccc-cc-ccccCCC--CcEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence            344455555555555445556667777777776642 22 2433333  6666666666655433233555555555555


Q ss_pred             cCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcC
Q 048194          363 QLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQF  442 (558)
Q Consensus       363 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  442 (558)
                      .                     ++         +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        96 ~---------------------l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           96 Q---------------------LQ---------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             C---------------------CC---------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             c---------------------cC---------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence            4                     44         23445578889999999999999987777889999999999999999


Q ss_pred             cccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCee
Q 048194          443 SDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESL  522 (558)
Q Consensus       443 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  522 (558)
                      ++..+..+..               +++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|+.|
T Consensus       146 ~~~~~~~~~~---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          146 QSLPKGVFDK---------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             CCCCTTTTTT---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CccCHHHhcc---------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            8666554433               8899999999999998877778999999999999999998777778999999999


Q ss_pred             cCCCCcCcccchhhhcCCCCCCEEeCcCCcCeeecC
Q 048194          523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ  558 (558)
Q Consensus       523 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  558 (558)
                      ++++|++.+.       +++|+.+++++|+++|.||
T Consensus       211 ~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          211 WLHDNPWDCT-------CPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             ECCSSCBCCC-------TTTTHHHHHHHHHTGGGBB
T ss_pred             EccCCCcccc-------CcHHHHHHHHHHhCCCccc
Confidence            9999998754       4578899999999999886

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.3e-21  Score=184.23  Aligned_cols=192  Identities=22%  Similarity=0.262  Sum_probs=144.4

Q ss_pred             CCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCcc
Q 048194           51 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAG  130 (558)
Q Consensus        51 ~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  130 (558)
                      .+|+.|.|..|..  ..++++++++.++. +|.  .+.  +++++|++++|.+.+. .+..+.++++|++|++++|.+++
T Consensus         2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~   73 (251)
T 3m19_A            2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT   73 (251)
T ss_dssp             --CHHHHSSEEEG--GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred             ccCCCCCceEcCC--CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence            3678899999953  34568888888874 333  232  5889999999998886 67778899999999999999987


Q ss_pred             CCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCcccc
Q 048194          131 QIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSN  210 (558)
Q Consensus       131 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  210 (558)
                      ..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+ 
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-  151 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-  151 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred             cCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc-
Confidence            77777888999999999999888 4433257788888888888888886555566788888888888888875555444 


Q ss_pred             ccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccc
Q 048194          211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAV  271 (558)
Q Consensus       211 ~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  271 (558)
                                        ..+++|++|++++|.++ .++...+..+++|++|++++|.+..
T Consensus       152 ------------------~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          152 ------------------DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ------------------TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ------------------CcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeC
Confidence                              66777888888887777 4454566677777777777776653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2e-21  Score=189.00  Aligned_cols=226  Identities=21%  Similarity=0.189  Sum_probs=167.6

Q ss_pred             CCCEEecCCCcccccC-ChhHHhhccccceEEEcCCccccccCCC----CCCCccCEEEcccccCcccCC-------CCC
Q 048194          305 QLQYLYLSENQISREI-PNWIWRVSVVGLHCLNLSHNFLVGFQAP----YSIPALRFIDLISNQLRGNIH-------QLP  372 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~L~~L~l~~n~~~~~~~-------~~~  372 (558)
                      .++.+.+.++.+.... .........++|++|++++|.+.+..+.    ..+++|++|++++|.+.+..+       ...
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            4666777666654321 1111122223478888888877765544    237788888888888876443       225


Q ss_pred             CCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCcc--C--CcccccCCCCCEEECCCCcCcccCCc
Q 048194          373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT--V--PKSIAKCKMLEVLNLGNNQFSDKFPC  448 (558)
Q Consensus       373 ~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~i~~~~p~  448 (558)
                      ++|++|++++|.+.         +..|..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|.++.. +.
T Consensus       145 ~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~  214 (310)
T 4glp_A          145 PGLKVLSIAQAHSP---------AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TG  214 (310)
T ss_dssp             SCCCEEEEECCSSC---------CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HH
T ss_pred             cCCCEEEeeCCCcc---------hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HH
Confidence            68888888888887         35567788999999999999998752  2  23347899999999999998621 11


Q ss_pred             cccCceeeccccchhhhhhhccceEEECCCCcccccCchhhccc---CCCCeeeCcCCcCcccccccccCCCCCCeecCC
Q 048194          449 SLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLL---KSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS  525 (558)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  525 (558)
                                 ........+++|++|++++|.+++..|..++.+   ++|++|++++|+++ .+|..+.  ++|+.|+|+
T Consensus       215 -----------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          215 -----------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             -----------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred             -----------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence                       011123557999999999999998878777776   79999999999999 7888775  899999999


Q ss_pred             CCcCcccchhhhcCCCCCCEEeCcCCcCeee
Q 048194          526 MNNLSRAIPSQLASLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       526 ~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  556 (558)
                      +|++++. |. +..+++|++|++++|+++++
T Consensus       281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             SCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred             CCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence            9999863 43 67889999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.2e-23  Score=205.51  Aligned_cols=263  Identities=19%  Similarity=0.198  Sum_probs=186.4

Q ss_pred             CCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCC--CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCc
Q 048194           50 STDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSL--HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAG  127 (558)
Q Consensus        50 ~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  127 (558)
                      +..|..|.++.|++ ..+++++++++.+..   .  .+..+  ++++.|++++|.+.+. .+. +..+++|++|++++|.
T Consensus        33 ~~vc~~W~~~~~~~-~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           33 SGVCKRWYRLASDE-SLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             TSSCHHHHHHHTCS-TTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCE
T ss_pred             HHHHHHHHHHhcCc-hhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccCCC
Confidence            34455698887753 567889999887762   2  45556  8899999999988775 444 5678999999999999


Q ss_pred             CccC-CChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCC-ccCcc-CCccccCCCCCCEEeCccc-cCCC
Q 048194          128 FAGQ-IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN-SLDGS-IPRSMFEFPMLQQLQLANN-QFGG  203 (558)
Q Consensus       128 l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~  203 (558)
                      +++. ++..+..+++|++|++++|.+++..+. .++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            8765 777888999999999999988865554 5778999999999998 56653 5666778899999999999 7764


Q ss_pred             C-CCccccccccchhhhhchhhhcccCCCC-CCCEEEcccc--cCCc-ccChhhhcCCCCCCEEEccCCc-ccccCCCcc
Q 048194          204 S-IPRFSNASSSALDTQIKRVYSCLGLRTQ-KLTPLLLSSN--NLNG-TVQLDKILSLGNLAKLDLSYNS-LAVDESSRN  277 (558)
Q Consensus       204 ~-~~~~~~~~~~~l~~li~~~~~~~~~~~~-~L~~L~l~~n--~l~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  277 (558)
                      . ++..+                   ..++ +|++|++++|  .+++ .++ ..+..+++|++|++++|. +++..+.. 
T Consensus       184 ~~~~~~~-------------------~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~-  242 (336)
T 2ast_B          184 KHVQVAV-------------------AHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQE-  242 (336)
T ss_dssp             HHHHHHH-------------------HHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGG-
T ss_pred             HHHHHHH-------------------HhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHH-
Confidence            3 33332                   6677 8999999988  4542 333 456778889999999888 55555544 


Q ss_pred             cCCCCCCCEEecCCCC-CC--CCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCC
Q 048194          278 YSFSPMLELLNLASCK-LR--EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQA  347 (558)
Q Consensus       278 ~~~~~~L~~L~l~~n~-l~--~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  347 (558)
                      +..+++|+.|++++|. ++  .+..+..+++|+.|++++| ++......+.  .  .+..|++++|.+++..+
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~--~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--E--ALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--H--HSTTSEESCCCSCCTTC
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--h--hCcceEEecccCccccC
Confidence            6677888888888884 33  2222667778888888877 4322212121  1  24555556666555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.7e-23  Score=203.95  Aligned_cols=267  Identities=19%  Similarity=0.204  Sum_probs=146.8

Q ss_pred             EEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC----CcccCCCC-CCCEEecCCCCCCCCCC--CCC-----C
Q 048194          236 PLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES----SRNYSFSP-MLELLNLASCKLREIPN--LKN-----Q  303 (558)
Q Consensus       236 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~-~L~~L~l~~n~l~~l~~--~~~-----~  303 (558)
                      .+++++|.++|.++ ..+...++|++|++++|.+.+..+    .. +..++ +|++|++++|+++....  +..     .
T Consensus         2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            35667777775554 344555557777777777765443    22 44555 66777777766664322  222     2


Q ss_pred             CCCCEEecCCCcccccCChhHHhh-cc--ccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEc
Q 048194          304 SQLQYLYLSENQISREIPNWIWRV-SV--VGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDF  380 (558)
Q Consensus       304 ~~L~~L~l~~n~l~~~~~~~~~~~-~~--~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l  380 (558)
                      ++|++|++++|.+++..+..+... ..  ++|++|++++|.+++.....-              ...+...+.+|++|++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--------------~~~l~~~~~~L~~L~L  145 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF--------------KQAFSNLPASITSLNL  145 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH--------------HHHHTTSCTTCCEEEC
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH--------------HHHHHhCCCceeEEEc
Confidence            667777777777665555544432 00  235555555555544332100              0000000123444444


Q ss_pred             cCCcccccCCCCCccCCCCCCCCCCC-CCCEEECcCCcCCccCCccc----ccC-CCCCEEECCCCcCcccCCccccCce
Q 048194          381 SNNNFTSSIPADTVNGTLPDTFPRNC-LLQTLDLNGNRPQGTVPKSI----AKC-KMLEVLNLGNNQFSDKFPCSLYDAP  454 (558)
Q Consensus       381 ~~n~~~~~~~~~~~~~~~p~~~~~~~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~i~~~~p~~~~~~~  454 (558)
                      ++|.+++...     ..++..+..++ +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++.....+    
T Consensus       146 s~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l----  216 (362)
T 3goz_A          146 RGNDLGIKSS-----DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL----  216 (362)
T ss_dssp             TTSCGGGSCH-----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH----
T ss_pred             cCCcCCHHHH-----HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH----
Confidence            4444331100     11222233333 68888888888876555433    344 488888888888765322211    


Q ss_pred             eeccccchhhhhh-hccceEEECCCCcccccCch----hhcccCCCCeeeCcCCcCccc-------ccccccCCCCCCee
Q 048194          455 ITIKGLDIKLQKI-LNIFTSIDFSTNNFKGPILE----DVGLLKSLYGLNLSHNALTGS-------IPSSFGNLKRLESL  522 (558)
Q Consensus       455 ~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L  522 (558)
                             ...+.. .++|++|+|++|.+++..+.    .+..+++|++|++++|.+.+.       ++..+..+++|+.|
T Consensus       217 -------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L  289 (362)
T 3goz_A          217 -------AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV  289 (362)
T ss_dssp             -------HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE
T ss_pred             -------HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE
Confidence                   011122 35788888888888765442    245567888888888874322       33456677778888


Q ss_pred             cCCCCcCcccch
Q 048194          523 DLSMNNLSRAIP  534 (558)
Q Consensus       523 ~L~~N~l~~~~~  534 (558)
                      |+++|++....+
T Consensus       290 dL~~N~l~~~~~  301 (362)
T 3goz_A          290 DKNGKEIHPSHS  301 (362)
T ss_dssp             CTTSCBCCGGGC
T ss_pred             ecCCCcCCCcch
Confidence            888888775543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=5.2e-21  Score=185.53  Aligned_cols=107  Identities=24%  Similarity=0.300  Sum_probs=80.9

Q ss_pred             CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +               ..+++|+.|++++|.+
T Consensus       125 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l---------------~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L---------------ANLSKLTTLKADDNKI  185 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G---------------TTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h---------------cCCCCCCEEECCCCcc
Confidence            5667778888888888875433  7778888888888888764322  2               2377888888888888


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      ++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            76433  788889999999999988544  37888899999999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=5.4e-21  Score=185.43  Aligned_cols=194  Identities=19%  Similarity=0.247  Sum_probs=122.9

Q ss_pred             ccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCC
Q 048194           87 LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLN  166 (558)
Q Consensus        87 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  166 (558)
                      ...+++|++|++++|.+..  ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+. .++  .+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS--AIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence            3456677777777776665  33 46677777777777777763 333 677777777777777766 333  3666777


Q ss_pred             ccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc
Q 048194          167 LVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG  246 (558)
Q Consensus       167 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~  246 (558)
                      |++|++++|.+++ ++ .+..+++|++|++++|.+++..+  +                   ..+++|++|++++|.+++
T Consensus       109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l-------------------~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--L-------------------AGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--G-------------------GGCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--c-------------------cCCCCccEEEccCCcCCC
Confidence            7777777777664 33 26667777777777777664322  2                   556667777777776653


Q ss_pred             ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCccc
Q 048194          247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~  317 (558)
                       ++.  +..+++|++|++++|.+++..+   +..+++|+.|++++|+++.++.+..+++|+.|++++|+++
T Consensus       166 -~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          166 -LTP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -CGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             -Chh--hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence             332  5666666666666666654332   4556666666666666665555666666666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=190.34  Aligned_cols=208  Identities=22%  Similarity=0.211  Sum_probs=105.6

Q ss_pred             CCCccEEEccCCccCccCCccc--cCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEccc
Q 048194          164 LLNLVCAVLSDNSLDGSIPRSM--FEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSS  241 (558)
Q Consensus       164 l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~  241 (558)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+..-.           ..+    ..+++|++|++++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-----------~~~----~~~~~L~~L~Ls~  154 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE-----------LQQ----WLKPGLKVLSIAQ  154 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH-----------HHT----TBCSCCCEEEEEC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH-----------HHh----hhccCCCEEEeeC
Confidence            3456666666666666666666  6677777777777777654431100           000    3455666666666


Q ss_pred             ccCCcccChhhhcCCCCCCEEEccCCccccc---CCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccc
Q 048194          242 NNLNGTVQLDKILSLGNLAKLDLSYNSLAVD---ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  318 (558)
Q Consensus       242 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~  318 (558)
                      |.+. .++...+..+++|++|++++|++.+.   .+...+..+++|++|++++|+++.++.                   
T Consensus       155 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------------------  214 (310)
T 4glp_A          155 AHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-------------------  214 (310)
T ss_dssp             CSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-------------------
T ss_pred             CCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-------------------
Confidence            6665 33334555666666666666655431   111112333444444444444433222                   


Q ss_pred             cCChh-HHhhccccceEEEcCCccccccCCC--CC---CCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCC
Q 048194          319 EIPNW-IWRVSVVGLHCLNLSHNFLVGFQAP--YS---IPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD  392 (558)
Q Consensus       319 ~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~--~~---~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~  392 (558)
                       .+.. +..+..  |++|++++|.+++..+.  ..   +++|++|++++|+++                           
T Consensus       215 -~~~~l~~~l~~--L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~---------------------------  264 (310)
T 4glp_A          215 -VCAALAAAGVQ--PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE---------------------------  264 (310)
T ss_dssp             -HHHHHHHHTCC--CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC---------------------------
T ss_pred             -HHHHHHhcCCC--CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC---------------------------
Confidence             0011 122222  55555555554443211  11   245555555555544                           


Q ss_pred             CccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcc
Q 048194          393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD  444 (558)
Q Consensus       393 ~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  444 (558)
                          .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       265 ----~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          265 ----QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ----SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ----chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence                2333332  4677777777777643 22 4566777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4.3e-21  Score=179.21  Aligned_cols=196  Identities=15%  Similarity=0.140  Sum_probs=140.9

Q ss_pred             CCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCc-CccCCChhccCCCCCcEEeccc-ccccccccchhhcCCCCccE
Q 048194           92 YLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAG-FAGQIPVQISRMARLVALDFSF-NQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        92 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~  169 (558)
                      +|++|++++|.+.+. .+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.++ .++...+.++++|++
T Consensus        32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            788888888888775 45578888888888888886 7755555788888888888887 8887 443335777888888


Q ss_pred             EEccCCccCccCCccccCCCCCC---EEeCccc-cCCCCCCccccccccchhhhhchhhhcccCCCCCCC-EEEcccccC
Q 048194          170 AVLSDNSLDGSIPRSMFEFPMLQ---QLQLANN-QFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLT-PLLLSSNNL  244 (558)
Q Consensus       170 L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~-~L~l~~n~l  244 (558)
                      |++++|.+++ +|. +..+++|+   +|++++| .+++..+..+                   ..+++|+ +|++++|.+
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-------------------~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-------------------QGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-------------------TTTBSSEEEEECCSCCC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc-------------------cchhcceeEEEcCCCCC
Confidence            8888888774 565 77777777   8888888 7765444444                   6677788 888888877


Q ss_pred             CcccChhhhcCCCCCCEEEccCCc-ccccCCCcccCCC-CCCCEEecCCCCCCCCCCCCCCCCCCEEecCCC
Q 048194          245 NGTVQLDKILSLGNLAKLDLSYNS-LAVDESSRNYSFS-PMLELLNLASCKLREIPNLKNQSQLQYLYLSEN  314 (558)
Q Consensus       245 ~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n  314 (558)
                      + .++...+.. ++|++|++++|+ ++...+.. +..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus       169 ~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          169 T-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             C-EECTTTTTT-CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred             c-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence            7 666555555 677777777774 66443333 6666 7777777777777777653 5667777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.9e-22  Score=200.73  Aligned_cols=108  Identities=17%  Similarity=0.119  Sum_probs=54.6

Q ss_pred             EECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCC----hhccCCC-CCcEEecccccccccccchhhcCC-----C
Q 048194           96 LNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP----VQISRMA-RLVALDFSFNQFSGSISSIRWEHL-----L  165 (558)
Q Consensus        96 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~l-----~  165 (558)
                      ++++.|.+++. +|..+...++|++|++++|.+++..+    ..+.+++ +|++|++++|.+++..+. .+..+     +
T Consensus         3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCT
T ss_pred             cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCC
Confidence            44555555554 44444444456666666666554444    4455555 566666666655533222 22222     5


Q ss_pred             CccEEEccCCccCccCCcccc----CC-CCCCEEeCccccCCCCC
Q 048194          166 NLVCAVLSDNSLDGSIPRSMF----EF-PMLQQLQLANNQFGGSI  205 (558)
Q Consensus       166 ~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~~~~~~  205 (558)
                      +|++|++++|.+++..+..+.    .+ ++|++|++++|.+++..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            555555555555544333222    22 55666666666655433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3e-22  Score=201.26  Aligned_cols=116  Identities=19%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             CCCCCCCEEECcCCcCCc-----cCCcccccCCCCCEEECCCCcCc----ccCCccccCceeeccccchhhhhhhccceE
Q 048194          403 PRNCLLQTLDLNGNRPQG-----TVPKSIAKCKMLEVLNLGNNQFS----DKFPCSLYDAPITIKGLDIKLQKILNIFTS  473 (558)
Q Consensus       403 ~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~i~----~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~  473 (558)
                      ..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|..               +..+++|++
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~---------------l~~~~~L~~  248 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA---------------LKSWPNLRE  248 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH---------------GGGCTTCCE
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH---------------HccCCCcCE
Confidence            344456666666666652     12225555666666666666654    112211               122455555


Q ss_pred             EECCCCccccc----Cchhhc--ccCCCCeeeCcCCcCcc----cccccc-cCCCCCCeecCCCCcCcccc
Q 048194          474 IDFSTNNFKGP----ILEDVG--LLKSLYGLNLSHNALTG----SIPSSF-GNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       474 L~Ls~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~  533 (558)
                      |+|++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            55555555543    233332  25555555555555554    244444 34555555555555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.2e-20  Score=176.12  Aligned_cols=197  Identities=16%  Similarity=0.139  Sum_probs=168.0

Q ss_pred             CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCC-CCCCccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCC
Q 048194           65 GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTS-FNGTQISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARL  142 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L  142 (558)
                      ..++.|+++++.+++..+.  .+..+++|++|++++|. +... .+..|.++++|++|++++ |.+++..+..|.++++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             CcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            5799999999999877766  78999999999999997 7764 556899999999999999 99997667789999999


Q ss_pred             cEEecccccccccccchhhcCCCCcc---EEEccCC-ccCccCCccccCCCCCC-EEeCccccCCCCCCccccccccchh
Q 048194          143 VALDFSFNQFSGSISSIRWEHLLNLV---CAVLSDN-SLDGSIPRSMFEFPMLQ-QLQLANNQFGGSIPRFSNASSSALD  217 (558)
Q Consensus       143 ~~L~L~~n~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~  217 (558)
                      ++|++++|.+++ +|.  +..+++|+   +|++++| .+++..+..+..+++|+ +|++++|.++ .+|...        
T Consensus       108 ~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~--------  175 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA--------  175 (239)
T ss_dssp             CEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT--------
T ss_pred             CEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh--------
Confidence            999999999984 664  77888888   9999999 89876667789999999 9999999998 455432        


Q ss_pred             hhhchhhhcccCCCCCCCEEEccccc-CCcccChhhhcCC-CCCCEEEccCCcccccCCCcccCCCCCCCEEecCCC
Q 048194          218 TQIKRVYSCLGLRTQKLTPLLLSSNN-LNGTVQLDKILSL-GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC  292 (558)
Q Consensus       218 ~li~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n  292 (558)
                                 ...++|++|++++|+ ++ .++...+..+ ++|++|++++|+++...+.    .+++|+.|++.++
T Consensus       176 -----------~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          176 -----------FNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT  236 (239)
T ss_dssp             -----------TTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred             -----------cCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence                       333789999999995 87 7777788999 9999999999999854432    5788999999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.1e-22  Score=197.28  Aligned_cols=101  Identities=22%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             CCCCEEEcccccCCcccChhhhcCC--CCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCC--CCC-CCCCCCC
Q 048194          232 QKLTPLLLSSNNLNGTVQLDKILSL--GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE--IPN-LKNQSQL  306 (558)
Q Consensus       232 ~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~-~~~~~~L  306 (558)
                      ..++.++++++.+.    ...+..+  ++++.|++++|.+.+..+.  +..+++|++|++++|.++.  ++. +..+++|
T Consensus        47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            34777888777665    2344444  6777777777777655433  3356667777777666652  444 5666666


Q ss_pred             CEEecCCCcccccCChhHHhhccccceEEEcCCc
Q 048194          307 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN  340 (558)
Q Consensus       307 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n  340 (558)
                      ++|++++|.+++..+..+..++.  |++|++++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~--L~~L~L~~~  152 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSN--LVRLNLSGC  152 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTT--CSEEECTTC
T ss_pred             CEEeCcCcccCHHHHHHHhcCCC--CCEEECCCC
Confidence            77777666665555555544333  555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=8.7e-22  Score=197.88  Aligned_cols=241  Identities=20%  Similarity=0.251  Sum_probs=157.2

Q ss_pred             cccCCCCCCEEECCCCCCCCCc---cchhhcCCCCCCEEeCcCC---cCccCCChhc-------cCCCCCcEEecccccc
Q 048194           86 ILFSLHYLRSLNLARTSFNGTQ---ISSKLANISSLTYLNLSDA---GFAGQIPVQI-------SRMARLVALDFSFNQF  152 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n~~  152 (558)
                      .+..+++|++|+|++|.+....   ++..+..+++|++|+|++|   .+++.+|..+       ..+++|++|+|++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            4567788888888888776541   2234667888888888875   3444555544       6778888888888888


Q ss_pred             ccc----ccchhhcCCCCccEEEccCCccCccCCcccc----CC---------CCCCEEeCccccCCC-CCCcccccccc
Q 048194          153 SGS----ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMF----EF---------PMLQQLQLANNQFGG-SIPRFSNASSS  214 (558)
Q Consensus       153 ~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~~~~-~~~~~~~~~~~  214 (558)
                      .+.    ++. .+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|++++ .++..      
T Consensus       107 ~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------  179 (386)
T 2ca6_A          107 GPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW------  179 (386)
T ss_dssp             CTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH------
T ss_pred             CHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH------
Confidence            752    333 467788888888888887643333333    33         788888888888762 22211      


Q ss_pred             chhhhhchhhhcccCCCCCCCEEEcccccCCcc----cChhhhcCCCCCCEEEccCCccc----ccCCCcccCCCCCCCE
Q 048194          215 ALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT----VQLDKILSLGNLAKLDLSYNSLA----VDESSRNYSFSPMLEL  286 (558)
Q Consensus       215 ~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~~L~~  286 (558)
                            ...+    ..+++|++|++++|.++..    +....+..+++|++|++++|.++    ...+.. +..+++|+.
T Consensus       180 ------~~~l----~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~  248 (386)
T 2ca6_A          180 ------AKTF----QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRE  248 (386)
T ss_dssp             ------HHHH----HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCE
T ss_pred             ------HHHH----HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCE
Confidence                  0111    5667888888888877621    12125667788888888888875    223333 566777888


Q ss_pred             EecCCCCCCCC-----CC-C--CCCCCCCEEecCCCcccc----cCChhH-HhhccccceEEEcCCccccccC
Q 048194          287 LNLASCKLREI-----PN-L--KNQSQLQYLYLSENQISR----EIPNWI-WRVSVVGLHCLNLSHNFLVGFQ  346 (558)
Q Consensus       287 L~l~~n~l~~l-----~~-~--~~~~~L~~L~l~~n~l~~----~~~~~~-~~~~~~~L~~L~ls~n~l~~~~  346 (558)
                      |++++|.++..     +. +  ..+++|++|++++|.+++    .+|..+ ..++.  |++|++++|.+++..
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~--L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD--LLFLELNGNRFSEED  319 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT--CCEEECTTSBSCTTS
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC--ceEEEccCCcCCcch
Confidence            88888877732     33 3  447778888888887765    355555 22344  777777777776554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=8.7e-20  Score=166.40  Aligned_cols=176  Identities=16%  Similarity=0.108  Sum_probs=82.5

Q ss_pred             eEEEcCCccccccCCCCCCCccCEEEcccccCcccCCC---CCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194          333 HCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQ---LPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ  409 (558)
Q Consensus       333 ~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~  409 (558)
                      +.++.+++.++.++... .+++++|++++|.+.+..+.   .+.+|++|++++|.++         +..+..+..+++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~   79 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------SLPNGVFNKLTSLT   79 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTTCTTCC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------ccChhhcCCCCCcC
Confidence            45555555555443221 34556666666655533322   1334555555555544         11122234445555


Q ss_pred             EEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhh
Q 048194          410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV  489 (558)
Q Consensus       410 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  489 (558)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+..               +++|++|++++|.+++..+..+
T Consensus        80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~~~~~~~~  144 (208)
T 2o6s_A           80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK---------------LTQLKDLRLYQNQLKSVPDGVF  144 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCSCCCTTTT
T ss_pred             EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc---------------CCcCCEEECCCCccceeCHHHh
Confidence            5555555555433344445555555555555554333322221               4455555555555554444344


Q ss_pred             cccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCC
Q 048194          490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASL  540 (558)
Q Consensus       490 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  540 (558)
                      ..+++|++|++++|.+.+       .+++|+.|+++.|++++.+|..++.+
T Consensus       145 ~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          145 DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            455555555555554432       23344555555555555555544443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=2.1e-19  Score=186.85  Aligned_cols=189  Identities=26%  Similarity=0.347  Sum_probs=146.3

Q ss_pred             CCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCc
Q 048194          305 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNN  384 (558)
Q Consensus       305 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~  384 (558)
                      +++.|++++|.+++ +|..+.    ++|++|++++|.++.++  ..+++|+.|++++|.+++ +|....+|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~l~~~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPELPASLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred             CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cchhhcCCCEEECCCCc
Confidence            78999999999875 666442    34999999999998665  347889999999998887 55555588999999998


Q ss_pred             ccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhh
Q 048194          385 FTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKL  464 (558)
Q Consensus       385 ~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~  464 (558)
                      ++          .+|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. +              
T Consensus       132 l~----------~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--------------  178 (571)
T 3cvr_A          132 LT----------MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--------------  178 (571)
T ss_dssp             CS----------CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--------------
T ss_pred             CC----------CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--------------
Confidence            87          3555   56788999999998885 554   56789999999998876 554 3              


Q ss_pred             hhhhccceEEECCCCcccccCchhhcccCCC-------CeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhh
Q 048194          465 QKILNIFTSIDFSTNNFKGPILEDVGLLKSL-------YGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQL  537 (558)
Q Consensus       465 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  537 (558)
                         .++|+.|+|++|.++. +|. +..  +|       +.|++++|+|+ .+|..+..+++|+.|+|++|++++..|..+
T Consensus       179 ---~~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          179 ---PESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             ---CTTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             ---hCCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence               2788899999998884 444 544  66       88999999888 688888888899999999999988888777


Q ss_pred             cCCCC
Q 048194          538 ASLYF  542 (558)
Q Consensus       538 ~~l~~  542 (558)
                      ..++.
T Consensus       251 ~~l~~  255 (571)
T 3cvr_A          251 SQQTA  255 (571)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            76543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=4.2e-19  Score=163.04  Aligned_cols=133  Identities=25%  Similarity=0.201  Sum_probs=82.2

Q ss_pred             CCEEECcCCcCCccCC-cccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194          408 LQTLDLNGNRPQGTVP-KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL  486 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  486 (558)
                      +++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..               +++|++|+|++|.+++..+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---------------l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------ASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---------------CTTCCEEECCSSCCCCCCG
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---------------CCCCCEEECCCCccCccCH
Confidence            4566666666654433 33556666666666666665544444432               5666666666666666555


Q ss_pred             hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194          487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      ..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++
T Consensus        99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            556666666666666666665556666666666666666666666556666666666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.6e-19  Score=177.05  Aligned_cols=98  Identities=12%  Similarity=0.101  Sum_probs=43.6

Q ss_pred             CCccceEeCCC----------CCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCE-Ee
Q 048194           54 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTY-LN  122 (558)
Q Consensus        54 c~~~~~~c~~~----------~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~-L~  122 (558)
                      |.|..|.|...          .++++|+|++|.++...+.  .|..+++|++|+|++|.+.+...+..|.+++++++ +.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            55667777431          2344444444444432222  34444444455544444433201223444444433 23


Q ss_pred             CcCCcCccCCChhccCCCCCcEEeccccccc
Q 048194          123 LSDAGFAGQIPVQISRMARLVALDFSFNQFS  153 (558)
Q Consensus       123 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~  153 (558)
                      +.+|.++...|..|..+++|++|++++|.+.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             ccCCcccccCchhhhhccccccccccccccc
Confidence            3334444333444444444444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.9e-19  Score=176.68  Aligned_cols=237  Identities=20%  Similarity=0.186  Sum_probs=137.9

Q ss_pred             EEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE-EEcc
Q 048194           95 SLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC-AVLS  173 (558)
Q Consensus        95 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~-L~L~  173 (558)
                      +++.+++.++.  +|..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.++...|.+++++++ +.+.
T Consensus        13 ~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34445555543  44433  2466777777777764333456777777777777777665555445666766654 4455


Q ss_pred             CCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccc-cCCcccChhh
Q 048194          174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSN-NLNGTVQLDK  252 (558)
Q Consensus       174 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~  252 (558)
                      +|++....|..+..+++|++|++++|++....+..+                   ....++..|++.++ .+. .++...
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~l~~l~l~~~~~i~-~l~~~~  148 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-------------------IHSLQKVLLDIQDNINIH-TIERNS  148 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-------------------CCBSSCEEEEEESCTTCC-EECTTS
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhh-------------------cccchhhhhhhccccccc-cccccc
Confidence            566665556667777777777777777764443332                   34445666666553 343 555555


Q ss_pred             hcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCC-CCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194          253 ILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS-CKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVS  328 (558)
Q Consensus       253 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  328 (558)
                      +..+. .++.|++++|+++...+.. + ...+|+++++.+ |.++.+|.  +..+++|++|++++|+++ .+|...  ..
T Consensus       149 f~~~~~~l~~L~L~~N~i~~i~~~~-f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~--~~  223 (350)
T 4ay9_X          149 FVGLSFESVILWLNKNGIQEIHNSA-F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LE  223 (350)
T ss_dssp             STTSBSSCEEEECCSSCCCEECTTS-S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS--CT
T ss_pred             hhhcchhhhhhccccccccCCChhh-c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh--hc
Confidence            55543 4667777777776433322 2 345677777764 56777776  677777777777777775 333321  11


Q ss_pred             cccceEEEcCCc-cccccCCCCCCCccCEEEcccc
Q 048194          329 VVGLHCLNLSHN-FLVGFQAPYSIPALRFIDLISN  362 (558)
Q Consensus       329 ~~~L~~L~ls~n-~l~~~~~~~~~~~L~~L~l~~n  362 (558)
                        +|+.|.+.++ .++..+....+++|+.+++.++
T Consensus       224 --~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          224 --NLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             --TCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             --cchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence              2555554433 3344433334666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=5.8e-19  Score=162.10  Aligned_cols=151  Identities=19%  Similarity=0.233  Sum_probs=71.5

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                      +.++++++.++......+.+++.|++++|.+++         ..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~---------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV---------IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE---------ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC---------cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            455666665553333334455555555555541         12224444555555555555555444555555555555


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      |++++|.+++..+..+.               .+++|++|+|++|.+++..+..|..+++|+.|++++|++++..+..|.
T Consensus        85 L~Ls~N~l~~l~~~~f~---------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFE---------------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             EECCSSCCCCCCTTTTT---------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             EECCCCcCCccCHhHcc---------------CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence            55555555432222221               144455555555555444444444455555555555555443334444


Q ss_pred             CCCCCCeecCCCCcC
Q 048194          515 NLKRLESLDLSMNNL  529 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l  529 (558)
                      .+++|+.|++++|++
T Consensus       150 ~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TCTTCCEEECCSSCE
T ss_pred             CCCCCCEEEeCCCCc
Confidence            445555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.9e-19  Score=164.17  Aligned_cols=182  Identities=18%  Similarity=0.162  Sum_probs=130.1

Q ss_pred             CCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCC
Q 048194           54 CDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP  133 (558)
Q Consensus        54 c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  133 (558)
                      |.|.++.|..           +.++. +|.    ...++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+
T Consensus         7 C~~~~v~c~~-----------~~l~~-~p~----~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (208)
T 2o6s_A            7 CSGTTVECYS-----------QGRTS-VPT----GIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPN   69 (208)
T ss_dssp             EETTEEECCS-----------SCCSS-CCS----CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             ECCCEEEecC-----------CCccC-CCC----CCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccCh
Confidence            6798888864           22221 222    2235788888888888765 55567788888888888888885555


Q ss_pred             hhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccc
Q 048194          134 VQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS  213 (558)
Q Consensus       134 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  213 (558)
                      ..|..+++|++|++++|.++ .++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+    
T Consensus        70 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----  144 (208)
T 2o6s_A           70 GVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF----  144 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT----
T ss_pred             hhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh----
Confidence            56778888888888888887 4433256788888888888888886656667788888888888888876555444    


Q ss_pred             cchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCC
Q 048194          214 SALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFS  281 (558)
Q Consensus       214 ~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  281 (558)
                                     ..+++|++|++++|.+.+        .+++|++|+++.|.+++..|.. ++.+
T Consensus       145 ---------------~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~-~~~l  188 (208)
T 2o6s_A          145 ---------------DRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS-AGSV  188 (208)
T ss_dssp             ---------------TTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCT-TSSB
T ss_pred             ---------------ccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeecc-Cccc
Confidence                           677888888888886653        3457788888888888777765 4443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=5.1e-19  Score=184.01  Aligned_cols=195  Identities=23%  Similarity=0.321  Sum_probs=157.5

Q ss_pred             CCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEccc
Q 048194          283 MLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS  361 (558)
Q Consensus       283 ~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~  361 (558)
                      +++.|++++|.++.+|. +  .++|++|++++|.++ .+|   ..+  ++|++|++++|.+++++.  -..+|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l--~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELP--ASLEYLDACDNRLSTLPE--LPASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCC--TTCCEEECCSSCCSCCCC--CCTTCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---ccc--CCCCEEEccCCCCCCcch--hhcCCCEEECCC
Confidence            89999999999999998 5  378999999999997 677   223  359999999999998665  233999999999


Q ss_pred             ccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCc
Q 048194          362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ  441 (558)
Q Consensus       362 n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  441 (558)
                      |.+++ +|..+.+|+.|++++|.++          .+|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.
T Consensus       130 N~l~~-lp~~l~~L~~L~Ls~N~l~----------~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          130 NQLTM-LPELPALLEYINADNNQLT----------MLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             SCCSC-CCCCCTTCCEEECCSSCCS----------CCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred             CcCCC-CCCcCccccEEeCCCCccC----------cCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence            99998 5557889999999999998          3555   46789999999999996 666 55  899999999999


Q ss_pred             CcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCC
Q 048194          442 FSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKR  518 (558)
Q Consensus       442 i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  518 (558)
                      ++ .+|. +..          ......+.|+.|+|++|.++. +|..+..+++|+.|++++|++++.+|..+..++.
T Consensus       192 L~-~lp~-~~~----------~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          192 LE-SLPA-VPV----------RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CS-SCCC-CC------------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CC-chhh-HHH----------hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            98 5665 321          001123445999999999995 7788888999999999999999999988876543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.8e-18  Score=159.95  Aligned_cols=153  Identities=21%  Similarity=0.186  Sum_probs=83.6

Q ss_pred             cCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCC
Q 048194          354 LRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLE  433 (558)
Q Consensus       354 L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  433 (558)
                      -+.++++++.+.......+.++++|++++|.++         +..|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT---------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccC---------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            455666666665443344556666666666655         23344555556666666666666544444455566666


Q ss_pred             EEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc
Q 048194          434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF  513 (558)
Q Consensus       434 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  513 (558)
                      +|++++|.+++..+..+..               +++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDR---------------LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             EEECCCCcCCccChhHhCc---------------chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence            6666666655433332222               555555555555555 344555555555555555555554444445


Q ss_pred             cCCCCCCeecCCCCcCcc
Q 048194          514 GNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       514 ~~l~~L~~L~L~~N~l~~  531 (558)
                      ..+++|+.|++++|.+..
T Consensus       156 ~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTCTTCCEEECTTSCBCT
T ss_pred             hCCCCCCEEEeeCCCccC
Confidence            555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.3e-18  Score=172.78  Aligned_cols=176  Identities=23%  Similarity=0.209  Sum_probs=135.6

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCC-CCCCCCEEECcCCcCCccCCcccccCCCCC
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP-RNCLLQTLDLNGNRPQGTVPKSIAKCKMLE  433 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~  433 (558)
                      +.++++++.+.......+..++.|++++|.+++         ..+..+. .+++|++|++++|.+++..+..+..+++|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~---------l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR---------LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE---------ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCc---------cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            456666666654333455567777777777762         3344555 788899999999999877778889999999


Q ss_pred             EEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccc
Q 048194          434 VLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSF  513 (558)
Q Consensus       434 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  513 (558)
                      +|++++|.+++..+..+..               +++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSD---------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             EEECCSSCCCEECTTTTTT---------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             EEECCCCcCCcCCHHHhCC---------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            9999999988665555533               8889999999999998888889999999999999999985433444


Q ss_pred             ---cCCCCCCeecCCCCcCcccchhhhcCCCC--CCEEeCcCCcCe
Q 048194          514 ---GNLKRLESLDLSMNNLSRAIPSQLASLYF--LSYLNLSYNQLE  554 (558)
Q Consensus       514 ---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~n~l~  554 (558)
                         ..+++|+.|+|++|+++...+..+..++.  ++.|++++|+++
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence               57899999999999998766677888776  488999999876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.2e-18  Score=158.25  Aligned_cols=168  Identities=19%  Similarity=0.206  Sum_probs=134.1

Q ss_pred             ccCCCCCCCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEe
Q 048194           43 KLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLN  122 (558)
Q Consensus        43 ~~~~w~~~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  122 (558)
                      ....|..+...|.|.++.|..           +.+. .+|.  .+  .++|++|++++|.+.+. .+..|.++++|++|+
T Consensus         8 ~~~~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~   70 (229)
T 3e6j_A            8 HHSAACPSQCSCSGTTVDCRS-----------KRHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELY   70 (229)
T ss_dssp             ---CCCCTTCEEETTEEECTT-----------SCCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             hhhccCCCCCEEeCCEeEccC-----------CCcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEE
Confidence            344566688999999999964           2232 2333  22  27899999999999887 788899999999999


Q ss_pred             CcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCC
Q 048194          123 LSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       123 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  202 (558)
                      |++|.+....+..|..+++|++|+|++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            9999998555566789999999999999998 454335788999999999999998 78888899999999999999998


Q ss_pred             CCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194          203 GSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV  248 (558)
Q Consensus       203 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~  248 (558)
                      +..+..+                   ..+++|+.|++++|.+.+..
T Consensus       149 ~~~~~~~-------------------~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          149 SIPHGAF-------------------DRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCTTTT-------------------TTCTTCCEEECTTSCBCTTB
T ss_pred             ccCHHHH-------------------hCCCCCCEEEeeCCCccCCc
Confidence            6655544                   77889999999999887543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=3.9e-18  Score=163.74  Aligned_cols=107  Identities=23%  Similarity=0.310  Sum_probs=67.0

Q ss_pred             CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  ..               +..+++|++|++++|.+
T Consensus       108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~---------------l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV---------------LSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG---------------GGGCTTCSEEECCSSCC
T ss_pred             hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh---------------hccCCCCCEEEccCCcc
Confidence            55666677777777776642  3566667777777777766542  11               22366677777777766


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      ++..+  +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            65433  6666777777777776663 33 36666777777777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.9e-18  Score=164.65  Aligned_cols=170  Identities=18%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             CCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCE
Q 048194          114 NISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQ  193 (558)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  193 (558)
                      .+++|++|++++|.+. .++ .+..+++|++|++++|.++ .++.  +.++++|++|++++|.+++ ++ .+..+++|++
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            3444444555444444 222 2444444555555554444 2221  4444445555555544442 22 2445555555


Q ss_pred             EeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccC
Q 048194          194 LQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDE  273 (558)
Q Consensus       194 L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  273 (558)
                      |++++|++++. +. +                   ..+++|++|++++|.+++ +  ..+..+++|++|++++|++.+..
T Consensus       117 L~L~~n~i~~~-~~-l-------------------~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A          117 LSLEHNGISDI-NG-L-------------------VHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             EECTTSCCCCC-GG-G-------------------GGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             EECCCCcCCCC-hh-h-------------------cCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccch
Confidence            55555555432 11 1                   444555555555555542 2  24555566666666666655433


Q ss_pred             CCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCccc
Q 048194          274 SSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       274 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~  317 (558)
                      +   +..+++|+.|++++|.++.++.+..+++|+.|++++|++.
T Consensus       173 ~---l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          173 P---LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G---GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred             h---hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence            3   4556666666666666666655666667777777777664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=5.1e-18  Score=155.80  Aligned_cols=156  Identities=17%  Similarity=0.204  Sum_probs=119.0

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                      +.+++++|.++......+..+++|++++|.+++..        .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE--------ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC--------CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccC--------chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            35666666655433334556677777777776221        1234677888999999999988777778888899999


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      |++++|.+++..+..+..               +++|++|+|++|.+++..+..|..+++|++|++++|++++..|..|.
T Consensus        86 L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKG---------------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             EECCSSCCCCCCGGGGTT---------------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             EECCCCccCccCHhHhcC---------------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            999999887665554433               78899999999999888888888899999999999999877788888


Q ss_pred             CCCCCCeecCCCCcCcccc
Q 048194          515 NLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l~~~~  533 (558)
                      .+++|+.|++++|++....
T Consensus       151 ~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TCTTCCEEECCSCCEECSG
T ss_pred             CCCCCCEEEecCcCCcCCC
Confidence            8999999999999887543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.4e-17  Score=152.75  Aligned_cols=153  Identities=22%  Similarity=0.244  Sum_probs=119.6

Q ss_pred             cEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCcee
Q 048194          376 IYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPI  455 (558)
Q Consensus       376 ~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~  455 (558)
                      +.++++++.++          .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..   
T Consensus        14 ~~v~c~~~~l~----------~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~---   78 (220)
T 2v9t_B           14 NIVDCRGKGLT----------EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---   78 (220)
T ss_dssp             TEEECTTSCCS----------SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT---
T ss_pred             CEEEcCCCCcC----------cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC---
Confidence            56777777776          5565443  56888888888888766667888888888888888888776766644   


Q ss_pred             eccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchh
Q 048194          456 TIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPS  535 (558)
Q Consensus       456 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  535 (558)
                                  +++|++|+|++|.++...+..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus        79 ------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           79 ------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             ------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence                        78888888888888866666678888888888888888877777888888888888888888877777


Q ss_pred             hhcCCCCCCEEeCcCCcCee
Q 048194          536 QLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       536 ~~~~l~~L~~L~l~~n~l~~  555 (558)
                      .+..+++|++|++++|++..
T Consensus       147 ~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEEC
T ss_pred             HHhCCCCCCEEEeCCCCcCC
Confidence            78888888888888887753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=7.5e-18  Score=151.99  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=113.3

Q ss_pred             CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194          397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF  476 (558)
Q Consensus       397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  476 (558)
                      .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..|..+..               +++|++|++
T Consensus        58 ~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------------l~~L~~L~L  119 (197)
T 4ezg_A           58 DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG---------------LTSLTLLDI  119 (197)
T ss_dssp             CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT---------------CTTCCEEEC
T ss_pred             ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC---------------CCCCCEEEe
Confidence            455 5777888999999999665  3347888999999999999998777766644               889999999


Q ss_pred             CCCcccccCchhhcccCCCCeeeCcCCc-CcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCee
Q 048194          477 STNNFKGPILEDVGLLKSLYGLNLSHNA-LTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      ++|.+++..+..++.+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9999998788899999999999999998 66 555 68999999999999999985 44 68889999999999999876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=9.9e-18  Score=176.33  Aligned_cols=169  Identities=19%  Similarity=0.261  Sum_probs=79.4

Q ss_pred             CCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcc
Q 048194          281 SPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLI  360 (558)
Q Consensus       281 ~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~  360 (558)
                      ++.|+.|++++|.++.++.+..+++|+.|++++|.+.+..+  +..+..  |+.|+|++|.+.+......+++|+.|+++
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~--L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKN--LGWLFLDENKIKDLSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTT--CCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCC--CCEEECcCCCCCCChhhccCCCCCEEEec
Confidence            34445555555555555445555555555555555543322  333333  55555555555443332335555555555


Q ss_pred             cccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCC
Q 048194          361 SNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN  440 (558)
Q Consensus       361 ~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  440 (558)
                      +|.+.+                               + ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|
T Consensus       118 ~N~l~~-------------------------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          118 HNGISD-------------------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             TSCCCC-------------------------------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             CCCCCC-------------------------------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            554431                               1 1133344455555555555432  34445555555555555


Q ss_pred             cCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCc
Q 048194          441 QFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT  506 (558)
Q Consensus       441 ~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  506 (558)
                      .+.+..|  +.               .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.
T Consensus       164 ~l~~~~~--l~---------------~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          164 QISDIVP--LA---------------GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCCCCGG--GT---------------TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             cCCCchh--hc---------------cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            5443322  11               244555555555555432  23455555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=7.8e-18  Score=177.13  Aligned_cols=190  Identities=19%  Similarity=0.239  Sum_probs=139.7

Q ss_pred             CCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEccccc
Q 048194          284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQ  363 (558)
Q Consensus       284 L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~  363 (558)
                      +..+.+..+.+..+..+..+++|+.|++++|.+.. ++ .+..++.  |+.|+|++|.+.+..+...+++|+.|++++|.
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~--L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQ-GIQYLPN--VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTT--CCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCC-Ch-HHccCCC--CCEEEeeCCCCCCChhhccCCCCCEEECcCCC
Confidence            33444555555555555566777777787777753 33 3444444  77777777777665553446666666666555


Q ss_pred             CcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCc
Q 048194          364 LRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFS  443 (558)
Q Consensus       364 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  443 (558)
                      +.                               .+| .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.++
T Consensus        99 l~-------------------------------~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           99 IK-------------------------------DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             CC-------------------------------CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CC-------------------------------CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence            43                               233 578889999999999999853  46889999999999999988


Q ss_pred             ccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeec
Q 048194          444 DKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLD  523 (558)
Q Consensus       444 ~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  523 (558)
                      +.  ..               +..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus       145 ~l--~~---------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  203 (605)
T 1m9s_A          145 DI--TV---------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  203 (605)
T ss_dssp             CC--GG---------------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             Cc--hh---------------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEE
Confidence            53  22               2348999999999999997655  8899999999999999985 44 589999999999


Q ss_pred             CCCCcCccc
Q 048194          524 LSMNNLSRA  532 (558)
Q Consensus       524 L~~N~l~~~  532 (558)
                      |++|++++.
T Consensus       204 L~~N~l~~~  212 (605)
T 1m9s_A          204 LFSQECLNK  212 (605)
T ss_dssp             CCSEEEECC
T ss_pred             ccCCcCcCC
Confidence            999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=7.5e-19  Score=189.60  Aligned_cols=259  Identities=15%  Similarity=0.095  Sum_probs=128.3

Q ss_pred             CcHHHHHHHHHHHhhcCCCCCCCcccCCCCC-CCCCCCccceEeCCCCCEEEEEcCCCCccccccCcccccCCCCCCEEE
Q 048194           19 CQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQ-STDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLN   97 (558)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~-~~~~c~~~~~~c~~~~~v~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~   97 (558)
                      ....++++++++..+.....+.  .-..|.. ....+.|.+..+.. ++++.++|.++.+......   +.....|+.+.
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~  202 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTA--KKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEANQA---LLQHKKLSQYS  202 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTT--C-------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCc--ccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcchhh---HhhcCccCccc
Confidence            4556888999999887544332  3445643 44556788877765 7899999998887653222   22222233322


Q ss_pred             -----CCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEc
Q 048194           98 -----LARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVL  172 (558)
Q Consensus        98 -----L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  172 (558)
                           +..|.+. . .+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|. .++++++|++|+|
T Consensus       203 i~~~~~~~n~~~-~-~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L  277 (727)
T 4b8c_D          203 IDEDDDIENRMV-M-PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDL  277 (727)
T ss_dssp             ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEEC
T ss_pred             ccCcccccccee-c-ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeC
Confidence                 2223332 2 4677889999999999999998 78888889999999999999998 7765 5899999999999


Q ss_pred             cCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhh
Q 048194          173 SDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDK  252 (558)
Q Consensus       173 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  252 (558)
                      ++|.++ .+|..++.+++|++|+|++|.++ .+|..+                   ..+++|++|+|++|.+++.++ ..
T Consensus       278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~-------------------~~l~~L~~L~L~~N~l~~~~p-~~  335 (727)
T 4b8c_D          278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF-------------------GNLCNLQFLGVEGNPLEKQFL-KI  335 (727)
T ss_dssp             TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST-------------------TSCTTCCCEECTTSCCCSHHH-HH
T ss_pred             cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh-------------------hcCCCccEEeCCCCccCCCCh-HH
Confidence            999999 78999999999999999999987 667655                   888999999999999986665 33


Q ss_pred             hcCCC-CCCEEEccCCcccccCCCcccCCCCCCCEEecCCCC-----CCCCCC-----CCCCCCCCEEecCCCccc
Q 048194          253 ILSLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK-----LREIPN-----LKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       253 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-----l~~l~~-----~~~~~~L~~L~l~~n~l~  317 (558)
                      +..+. .+..+++++|.+.+..|.       .|+.|+++.|.     +..++.     +..+..+....++.|.+.
T Consensus       336 ~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          336 LTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred             HhhcchhhhHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            33221 222467888888765543       45566666651     112222     344555566666676654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2e-17  Score=149.19  Aligned_cols=153  Identities=15%  Similarity=0.158  Sum_probs=75.8

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL  167 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  167 (558)
                      ..+++|++|++++|.+..  +| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+. .++.+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTC
T ss_pred             hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccCh-hhcCCCCC
Confidence            344555555555555553  33 3555555556655555443 1 22455555555555555555533322 34555555


Q ss_pred             cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194          168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT  247 (558)
Q Consensus       168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~  247 (558)
                      ++|++++|.+++..|..+..+++|++|++++|...+.++. +                   ..+++|++|++++|.+++ 
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l-------------------~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L-------------------KTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G-------------------GGCSSCCEEECTTBCCCC-
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-h-------------------cCCCCCCEEECCCCCCcC-
Confidence            5555555555544455555555555555555542222221 1                   444555555555555542 


Q ss_pred             cChhhhcCCCCCCEEEccCCcc
Q 048194          248 VQLDKILSLGNLAKLDLSYNSL  269 (558)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~n~l  269 (558)
                      ++  .+..+++|++|++++|++
T Consensus       174 ~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          174 YR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CT--TGGGCSSCCEEEECBC--
T ss_pred             hH--HhccCCCCCEEEeeCccc
Confidence            22  344445555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=8.7e-18  Score=158.73  Aligned_cols=106  Identities=25%  Similarity=0.321  Sum_probs=59.3

Q ss_pred             CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      +..+++|++|++++|++++ ++. +.. ++|+.|++++|.+++. + .               +..+++|+.|++++|.+
T Consensus        81 l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~---------------l~~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-S---------------LIHLKNLEILSIRNNKL  140 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-G---------------GTTCTTCCEEECTTSCC
T ss_pred             hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-h---------------hcCcccccEEECCCCcC
Confidence            5556666666666666653 222 122 5666666666666532 1 1               12356666666666666


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      ++.  ..++.+++|++|++++|++++.  ..+..+++|+.|++++|+++.
T Consensus       141 ~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          141 KSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            543  2455666666666666666543  445566666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=1e-16  Score=158.99  Aligned_cols=154  Identities=22%  Similarity=0.213  Sum_probs=133.7

Q ss_pred             CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccc-cCCCCCEEECCCCcCcccCCccccCc
Q 048194          375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIA-KCKMLEVLNLGNNQFSDKFPCSLYDA  453 (558)
Q Consensus       375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~  453 (558)
                      -+.++++++.++          .+|..+.  ..++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..+.. 
T Consensus        20 ~~~l~c~~~~l~----------~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-   86 (361)
T 2xot_A           20 SNILSCSKQQLP----------NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-   86 (361)
T ss_dssp             TTEEECCSSCCS----------SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-
T ss_pred             CCEEEeCCCCcC----------ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-
Confidence            468999999988          5676543  3589999999999987777787 9999999999999999777666644 


Q ss_pred             eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194          454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  533 (558)
                                    +++|++|+|++|.++...+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+++...
T Consensus        87 --------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           87 --------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             --------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             --------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence                          899999999999999888888999999999999999999888899999999999999999999655


Q ss_pred             hhhh---cCCCCCCEEeCcCCcCee
Q 048194          534 PSQL---ASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       534 ~~~~---~~l~~L~~L~l~~n~l~~  555 (558)
                      +..+   ..+++|+.|+|++|+|++
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCC
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCc
Confidence            5555   578999999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.3e-19  Score=189.41  Aligned_cols=121  Identities=21%  Similarity=0.206  Sum_probs=94.8

Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      |+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..               +++|+.|+|++|.+++ +| 
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------l~~L~~L~Ls~N~l~~-lp-  502 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------LRCLEVLQASDNALEN-VD-  502 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG---------------CTTCCEEECCSSCCCC-CG-
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc---------------CCCCCEEECCCCCCCC-Cc-
Confidence            7778888888874 555 778888888888888877 56665543               7788888888888886 45 


Q ss_pred             hhcccCCCCeeeCcCCcCcccc-cccccCCCCCCeecCCCCcCcccchh---hhcCCCCCCEEeC
Q 048194          488 DVGLLKSLYGLNLSHNALTGSI-PSSFGNLKRLESLDLSMNNLSRAIPS---QLASLYFLSYLNL  548 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l  548 (558)
                      .++.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++..|.   .+..+++|+.|++
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7888999999999999998766 88899999999999999999865442   2344788888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1e-16  Score=143.70  Aligned_cols=133  Identities=23%  Similarity=0.259  Sum_probs=95.6

Q ss_pred             CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCc-ccccCCCCCEEECCCCcCcccCCccccCc
Q 048194          375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPK-SIAKCKMLEVLNLGNNQFSDKFPCSLYDA  453 (558)
Q Consensus       375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~p~~~~~~  453 (558)
                      .+.++++++.++          .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.. 
T Consensus        10 ~~~l~~s~~~l~----------~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-   76 (192)
T 1w8a_A           10 GTTVDCTGRGLK----------EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-   76 (192)
T ss_dssp             TTEEECTTSCCS----------SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-
T ss_pred             CCEEEcCCCCcC----------cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-
Confidence            367788888776          55554433  678888888888755553 4777888888888888877766665543 


Q ss_pred             eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194          454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  533 (558)
                                    +++|++|+|++|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..
T Consensus        77 --------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           77 --------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             --------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             --------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence                          677777777777777766666777777777777777777777777777777777777777776544


Q ss_pred             h
Q 048194          534 P  534 (558)
Q Consensus       534 ~  534 (558)
                      +
T Consensus       143 ~  143 (192)
T 1w8a_A          143 H  143 (192)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=8.4e-17  Score=151.95  Aligned_cols=102  Identities=22%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             CCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194           90 LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        90 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  169 (558)
                      +.+++.++++.+.+.+.  + .+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .++.  +.++++|++
T Consensus        18 l~~l~~l~l~~~~i~~~--~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL--V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE--E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCcccc--c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence            34444555555555442  2 3455556666666666555 333 4555555555555555555 2221  444555555


Q ss_pred             EEccCCccCccCCccccCCCCCCEEeCccccCC
Q 048194          170 AVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       170 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  202 (558)
                      |++++|.+++ +|. +.. ++|++|++++|.++
T Consensus        90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~  119 (263)
T 1xeu_A           90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR  119 (263)
T ss_dssp             EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS
T ss_pred             EECCCCccCC-cCc-ccc-CcccEEEccCCccC
Confidence            5555554442 222 111 44444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=2.8e-16  Score=137.80  Aligned_cols=133  Identities=25%  Similarity=0.210  Sum_probs=99.1

Q ss_pred             CCCCEEECcCCcCC-ccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194          406 CLLQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP  484 (558)
Q Consensus       406 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  484 (558)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+.               .+++|++|++++|.+++.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------~l~~L~~L~Ls~N~l~~~   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP---------------KLPKLKKLELSENRIFGG   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC---------------CCSSCCEEEEESCCCCSC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc---------------cCCCCCEEECcCCcCchH
Confidence            45777777777776 56676677777788888888777654  3332               267788888888888776


Q ss_pred             CchhhcccCCCCeeeCcCCcCcccc-cccccCCCCCCeecCCCCcCcccch---hhhcCCCCCCEEeCcCCcCee
Q 048194          485 ILEDVGLLKSLYGLNLSHNALTGSI-PSSFGNLKRLESLDLSMNNLSRAIP---SQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       485 ~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      +|..+..+++|++|++++|++++.. +..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.++.
T Consensus        87 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            6777777888888888888887532 2677888888888888888876544   477888888888888887765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=6.1e-16  Score=138.68  Aligned_cols=158  Identities=19%  Similarity=0.274  Sum_probs=120.2

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCC--CCCCCCCCCEEECcCCcCCccCCcccccCCCC
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPD--TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML  432 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  432 (558)
                      +.+++++|.++......+.++++|++++|.+.          .++.  .+..+++|++|++++|.+++..|..+..+++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELG----------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCC----------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCC----------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            68899999886544445678999999999987          3333  37888899999999999998888889999999


Q ss_pred             CEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccc
Q 048194          433 EVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS  512 (558)
Q Consensus       433 ~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  512 (558)
                      ++|++++|.+++..|..+..               +++|++|+|++|.+++..|..|..+++|++|++++|++++..+..
T Consensus        81 ~~L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A           81 QELQLGENKIKEISNKMFLG---------------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTT---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             CEEECCCCcCCccCHHHhcC---------------CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence            99999999998877766544               788999999999999888888999999999999999988655421


Q ss_pred             -ccCCCCCCeecCCCCcCcccchhhhcC
Q 048194          513 -FGNLKRLESLDLSMNNLSRAIPSQLAS  539 (558)
Q Consensus       513 -l~~l~~L~~L~L~~N~l~~~~~~~~~~  539 (558)
                       +.  ..++...+..+......|..+.+
T Consensus       146 ~~~--~~l~~~~~~~~~~~C~~P~~l~~  171 (192)
T 1w8a_A          146 WFA--EWLRKKSLNGGAARCGAPSKVRD  171 (192)
T ss_dssp             HHH--HHHHHHCCSGGGCBBCSSTTTTT
T ss_pred             HHH--HHHHHcCCCCCCCCCCCChHHcC
Confidence             11  11233344455555455555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=3.7e-16  Score=134.01  Aligned_cols=128  Identities=23%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             CCCCEEECcCCcCC-ccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc
Q 048194          406 CLLQTLDLNGNRPQ-GTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP  484 (558)
Q Consensus       406 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  484 (558)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+.               .+++|++|++++|.+++.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP---------------KLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------CCTTCCEEECCSSCCCSC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------cCCCCCEEECCCCcccch
Confidence            56888888888887 66777778888888888888887754  2222               377888888888888877


Q ss_pred             CchhhcccCCCCeeeCcCCcCccc-ccccccCCCCCCeecCCCCcCcccch---hhhcCCCCCCEEeCcC
Q 048194          485 ILEDVGLLKSLYGLNLSHNALTGS-IPSSFGNLKRLESLDLSMNNLSRAIP---SQLASLYFLSYLNLSY  550 (558)
Q Consensus       485 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~  550 (558)
                      +|..++.+++|++|++++|++++. .+..+..+++|+.|++++|++++..+   ..+..+++|++|++++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            778788899999999999999853 34778899999999999999987655   5788899999998874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=5.7e-17  Score=174.93  Aligned_cols=143  Identities=23%  Similarity=0.281  Sum_probs=106.6

Q ss_pred             CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194          397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF  476 (558)
Q Consensus       397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  476 (558)
                      ..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..               +++|++|+|
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------l~~L~~L~L  277 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN---------------LSNLRVLDL  277 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG---------------GTTCCEEEC
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC---------------CCCCCEEeC
Confidence            45666777888888888888887 67777778888888888888887 67766543               888888888


Q ss_pred             CCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCC-CCEEeCcCCcCee
Q 048194          477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYF-LSYLNLSYNQLEG  555 (558)
Q Consensus       477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~n~l~~  555 (558)
                      ++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|++++.+|..+..+.. +..+++++|.++|
T Consensus       278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            888888 56888888888888888888887 77888888888888888888888877776654321 2235677777776


Q ss_pred             ecC
Q 048194          556 RFQ  558 (558)
Q Consensus       556 ~~~  558 (558)
                      .+|
T Consensus       356 ~~p  358 (727)
T 4b8c_D          356 PLP  358 (727)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2.7e-18  Score=179.53  Aligned_cols=202  Identities=19%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCc-------------CccCCChhccCCCCCcEEe-ccccccc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAG-------------FAGQIPVQISRMARLVALD-FSFNQFS  153 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~~~  153 (558)
                      ...++|+.|+|++|.+..  +|..++++++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~--Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHHh--hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            345556666666665542  55566666666666654443             2333444444455555554 3333322


Q ss_pred             ccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCC
Q 048194          154 GSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQK  233 (558)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~  233 (558)
                       .+           +.+.+++|.+.. ++.     ..|++|++++|.+++ +|. +                   ..+++
T Consensus       424 -~L-----------~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~-------------------~~l~~  464 (567)
T 1dce_A          424 -DL-----------RSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-L-------------------EQLLL  464 (567)
T ss_dssp             -HH-----------HHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-G-------------------GGGTT
T ss_pred             -hh-----------hhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-c-------------------ccccc
Confidence             11           111122222221 111     236677777777664 443 3                   56667


Q ss_pred             CCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCC--CC-CCCCCCCCEEe
Q 048194          234 LTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI--PN-LKNQSQLQYLY  310 (558)
Q Consensus       234 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~-~~~~~~L~~L~  310 (558)
                      |+.|++++|.++ .+| ..+..+++|++|++++|.+++. | . +..+++|+.|++++|+++.+  |. +..+++|+.|+
T Consensus       465 L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~l-p-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENV-D-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             CCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCCCC-G-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CcEeecCccccc-ccc-hhhhcCCCCCEEECCCCCCCCC-c-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            777777777776 555 3566777777777777777652 3 3 66777777777777777766  55 77778888888


Q ss_pred             cCCCcccccCChh---HHhhccccceEEEc
Q 048194          311 LSENQISREIPNW---IWRVSVVGLHCLNL  337 (558)
Q Consensus       311 l~~n~l~~~~~~~---~~~~~~~~L~~L~l  337 (558)
                      +++|++++..|..   +..++  +|+.|++
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp--~L~~L~l  567 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLP--SVSSILT  567 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCT--TCSEEEC
T ss_pred             ecCCcCCCCccHHHHHHHHCc--ccCccCC
Confidence            8888876554422   22233  3777753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.7e-15  Score=132.63  Aligned_cols=134  Identities=21%  Similarity=0.204  Sum_probs=97.8

Q ss_pred             CCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194          374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA  453 (558)
Q Consensus       374 ~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~  453 (558)
                      +.+.++++++.++          .+|..+  .++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+.. 
T Consensus         8 ~~~~l~~~~~~l~----------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-   74 (177)
T 2o6r_A            8 SGTEIRCNSKGLT----------SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-   74 (177)
T ss_dssp             ETTEEECCSSCCS----------SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-
T ss_pred             CCCEEEecCCCCc----------cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-
Confidence            3567888888776          455433  257888888888888666666788888888888888887554443332 


Q ss_pred             eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194          454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  533 (558)
                                    +++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus        75 --------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           75 --------------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             --------------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence                          777888888888888766666777888888888888887555555677888888888888877654


Q ss_pred             h
Q 048194          534 P  534 (558)
Q Consensus       534 ~  534 (558)
                      |
T Consensus       141 ~  141 (177)
T 2o6r_A          141 P  141 (177)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=3.1e-15  Score=133.97  Aligned_cols=129  Identities=26%  Similarity=0.325  Sum_probs=97.7

Q ss_pred             CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCce
Q 048194          375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAP  454 (558)
Q Consensus       375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~  454 (558)
                      -+.++++++.++          .+|..+.  ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..  
T Consensus        12 ~~~l~~~~~~l~----------~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~--   76 (193)
T 2wfh_A           12 DTVVRCSNKGLK----------VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN--   76 (193)
T ss_dssp             TTEEECTTSCCS----------SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT--
T ss_pred             CCEEEcCCCCCC----------cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC--
Confidence            467888888877          5565443  47888888888887 66778888888888888888887665555543  


Q ss_pred             eeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          455 ITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       455 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                                   +++|++|+|++|.+++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++..
T Consensus        77 -------------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           77 -------------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             -------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             -------------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence                         7788888888888887777778888888888888888875555567778888888888887753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=7.4e-16  Score=150.86  Aligned_cols=103  Identities=11%  Similarity=-0.001  Sum_probs=67.3

Q ss_pred             CCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCC-eeeCcCCcCcc
Q 048194          429 CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLY-GLNLSHNALTG  507 (558)
Q Consensus       429 l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~  507 (558)
                      +++|+.+++.+|.++...+..+..               +++|+++++.+| ++......|.++++|+ .+++.+ .++.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~---------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~  287 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQ---------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA  287 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTT---------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred             cCCCeEEECCCCCcceecHhhhhC---------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence            555566666555554333333322               555666666555 5545566777777787 777776 6665


Q ss_pred             cccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeC
Q 048194          508 SIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNL  548 (558)
Q Consensus       508 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  548 (558)
                      ..+.+|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus       288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            55677778888888888788777666677778878877753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.6e-15  Score=132.92  Aligned_cols=138  Identities=22%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             CCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCcccc
Q 048194          372 PNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLY  451 (558)
Q Consensus       372 ~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~  451 (558)
                      +.+++.|++++|.++.        +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+ 
T Consensus        23 ~~~L~~L~l~~n~l~~--------~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-   91 (168)
T 2ell_A           23 PAAVRELVLDNCKSND--------GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-   91 (168)
T ss_dssp             TTSCSEEECCSCBCBT--------TBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-
T ss_pred             cccCCEEECCCCCCCh--------hhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-
Confidence            3456666666666541        24666677788899999999988855  678888899999999998887655443 


Q ss_pred             CceeeccccchhhhhhhccceEEECCCCcccccC-chhhcccCCCCeeeCcCCcCccccc---ccccCCCCCCeecCCCC
Q 048194          452 DAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI-LEDVGLLKSLYGLNLSHNALTGSIP---SSFGNLKRLESLDLSMN  527 (558)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~N  527 (558)
                                    ..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|
T Consensus        92 --------------~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           92 --------------EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             --------------HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             --------------hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence                          23788999999999988643 3778899999999999999985544   47889999999999999


Q ss_pred             cCcccchh
Q 048194          528 NLSRAIPS  535 (558)
Q Consensus       528 ~l~~~~~~  535 (558)
                      .+. ..|+
T Consensus       158 ~~~-~~~~  164 (168)
T 2ell_A          158 EDQ-EAPD  164 (168)
T ss_dssp             TSC-BCCS
T ss_pred             Chh-hccc
Confidence            886 3443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=9.6e-15  Score=130.77  Aligned_cols=128  Identities=19%  Similarity=0.194  Sum_probs=92.5

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                      +.++++++.++......+.+++.|++++|.++          .+|..+..+++|+.|++++|.+++..+..|..+++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~----------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT----------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC----------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc----------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            56777777776444445667778888887776          56666777777888888888877666677777778888


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG  507 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  507 (558)
                      |++++|.+++..|..+..               +++|+.|+|++|.++...+..|..+++|+.|++++|++.+
T Consensus        83 L~Ls~N~l~~i~~~~f~~---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDG---------------LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             EECCSSCCCBCCTTTTTT---------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCccCEeCHHHhCC---------------CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            888888777665555533               6777888888887776666667777788888888777753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.5e-14  Score=127.82  Aligned_cols=130  Identities=20%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                      +.++++++.++......+.+++.|++++|.++         +..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCccc---------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            45566666555443444556666666666655         122233455566666666666665444445556666666


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS  508 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  508 (558)
                      |++++|.+++..+..+..               +++|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus        81 L~l~~N~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDK---------------LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             EECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EECCCCCccccCHHHhhC---------------CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            666666665443333322               55666666666666654444455566666666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.7e-15  Score=127.76  Aligned_cols=129  Identities=20%  Similarity=0.163  Sum_probs=102.2

Q ss_pred             CCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccC
Q 048194          373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD  452 (558)
Q Consensus       373 ~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~  452 (558)
                      ++++.+++++|.++.        +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+  
T Consensus        17 ~~l~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--   84 (149)
T 2je0_A           17 SDVKELVLDNSRSNE--------GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--   84 (149)
T ss_dssp             GGCSEEECTTCBCBT--------TBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--
T ss_pred             ccCeEEEccCCcCCh--------hHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--
Confidence            455556666665541        24667778888999999999999865  678889999999999999987555433  


Q ss_pred             ceeeccccchhhhhhhccceEEECCCCccccc-CchhhcccCCCCeeeCcCCcCccccc---ccccCCCCCCeecCCC
Q 048194          453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGP-ILEDVGLLKSLYGLNLSHNALTGSIP---SSFGNLKRLESLDLSM  526 (558)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~  526 (558)
                                   ..+++|++|++++|.+++. .+..++.+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        85 -------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 -------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             -------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             -------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence                         3488999999999999874 34788999999999999999996555   4789999999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=5.2e-15  Score=130.64  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=87.1

Q ss_pred             CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      +..+.+|+.|++++|.++ .++......++|++|++++|.+++.  ..+.               .+++|++|++++|.+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~---------------~l~~L~~L~Ls~N~l   76 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFP---------------LLRRLKTLLVNNNRI   76 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCC---------------CCSSCCEEECCSSCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccc---------------cCCCCCEEECCCCcc
Confidence            344556777777777776 3343223333777777777777653  2222               266777777777777


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCcccccc--cccCCCCCCeecCCCCcCcccchhh----hcCCCCCCEEeCcCCcCee
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIPS--SFGNLKRLESLDLSMNNLSRAIPSQ----LASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~n~l~~  555 (558)
                      ++..+..++.+++|++|++++|+++ .+|.  .+..+++|+.|++++|+++ ..|..    +..+++|++|++++|.+.+
T Consensus        77 ~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           77 CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7654444577777777777777775 4554  6777777777777777776 34543    6777777777777776543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=7.5e-14  Score=136.52  Aligned_cols=102  Identities=19%  Similarity=0.132  Sum_probs=85.5

Q ss_pred             CCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCC-EEecCCCCCCCCCC--CCCCCCC
Q 048194          230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLE-LLNLASCKLREIPN--LKNQSQL  306 (558)
Q Consensus       230 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~l~~--~~~~~~L  306 (558)
                      .+++|+.+++.+|.++ .++...|..+++|+++++.+| ++... ...|.++++|+ .+++.+ .++.|+.  |.++++|
T Consensus       224 ~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          224 YMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             HCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             hcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            3789999999999988 888889999999999999998 65444 44499999999 999998 8888876  9999999


Q ss_pred             CEEecCCCcccccCChhHHhhccccceEEEc
Q 048194          307 QYLYLSENQISREIPNWIWRVSVVGLHCLNL  337 (558)
Q Consensus       307 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  337 (558)
                      +.+++++|.+....+..|..+..  |+.++.
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~--L~~ly~  328 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVP--SKLIYK  328 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCC--CCEEEC
T ss_pred             CEEEeCCCccCccchhhhcCCcc--hhhhcc
Confidence            99999999987666667777666  888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=3.1e-14  Score=125.64  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=72.5

Q ss_pred             CCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194          407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL  486 (558)
Q Consensus       407 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  486 (558)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+               ..+++|++|++++|.++. ++
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~---------------~~l~~L~~L~L~~N~i~~-~~  104 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD---------------QALPDLTELILTNNSLVE-LG  104 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH---------------HHCTTCCEEECCSCCCCC-GG
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh---------------hcCCCCCEEECCCCcCCc-ch
Confidence            567777777766643  456666777777777777664322211               236677777777777754 33


Q ss_pred             h--hhcccCCCCeeeCcCCcCccccccc----ccCCCCCCeecCCCCcCc
Q 048194          487 E--DVGLLKSLYGLNLSHNALTGSIPSS----FGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       487 ~--~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~N~l~  530 (558)
                      .  .+..+++|+.|++++|+++ .+|..    +..+++|+.||+++|...
T Consensus       105 ~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          105 DLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             GGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            3  6778888888999888887 45654    788889999999888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=3.3e-12  Score=128.09  Aligned_cols=235  Identities=14%  Similarity=0.126  Sum_probs=120.7

Q ss_pred             hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhh
Q 048194          250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRV  327 (558)
Q Consensus       250 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~  327 (558)
                      ...|..+++|+.+.+..+. . ......|.++++|+.+.+..+ ++.++.  +..+..|+.+.+..+...  +.......
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~  229 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK  229 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred             hhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence            3456666666666665442 1 122233666667777766554 454544  666666776666554321  12222222


Q ss_pred             ccccceEEEcCCccccccC--CCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCC
Q 048194          328 SVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN  405 (558)
Q Consensus       328 ~~~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~  405 (558)
                      .  .++.+.+.... +.+.  ....+..++.+.+..+...                               .....+..+
T Consensus       230 ~--~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-------------------------------i~~~~F~~~  275 (394)
T 4fs7_A          230 T--GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-------------------------------IGGSLFYNC  275 (394)
T ss_dssp             C--CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-------------------------------ECSCTTTTC
T ss_pred             C--CCceEEECCCc-eecccccccccccceeEEcCCCcce-------------------------------eeccccccc
Confidence            2  25555554322 1111  1123555555555443221                               112334455


Q ss_pred             CCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC
Q 048194          406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI  485 (558)
Q Consensus       406 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  485 (558)
                      ..++.+....+.+.   ...+..+.+|+.+.+.++ ++......+               ..+.+|+.+++..+ ++...
T Consensus       276 ~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF---------------~~c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          276 SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAF---------------ESCTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTT---------------TTCTTCCEECCCTT-CCEEC
T ss_pred             cccceeccCceeec---cccccccccccccccccc-cceechhhh---------------cCCCCCCEEEeCCc-ccEEh
Confidence            55555555544322   234555666666666543 322222222               22566666666533 44445


Q ss_pred             chhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEE
Q 048194          486 LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYL  546 (558)
Q Consensus       486 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  546 (558)
                      ...|.+|.+|+.+.+..+ ++.....+|.++++|+.+++..+ +. .+...|.++++|+++
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            566777777777777765 55445566777777777777654 22 223456666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=5.2e-16  Score=140.00  Aligned_cols=137  Identities=21%  Similarity=0.207  Sum_probs=110.5

Q ss_pred             CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194          397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF  476 (558)
Q Consensus       397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  476 (558)
                      .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+               ..+++|++|++
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~---------------~~~~~L~~L~L  100 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD---------------AVADTLEELWI  100 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH---------------HHHHHCSEEEE
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh---------------hcCCcCCEEEC
Confidence            344467788899999999999985 66 8889999999999999987 445433               23689999999


Q ss_pred             CCCcccccCchhhcccCCCCeeeCcCCcCccccc-ccccCCCCCCeecCCCCcCcccchh----------hhcCCCCCCE
Q 048194          477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAIPS----------QLASLYFLSY  545 (558)
Q Consensus       477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~  545 (558)
                      ++|.+++ ++ .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++..|.          .+..+++|++
T Consensus       101 ~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             cCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            9999986 33 68899999999999999984332 4788999999999999999876654          3788899999


Q ss_pred             EeCcCCcCee
Q 048194          546 LNLSYNQLEG  555 (558)
Q Consensus       546 L~l~~n~l~~  555 (558)
                      ||  +|+++.
T Consensus       179 Ld--~~~i~~  186 (198)
T 1ds9_A          179 LD--GMPVDV  186 (198)
T ss_dssp             EC--CGGGTT
T ss_pred             EC--CcccCH
Confidence            87  676654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=2.1e-13  Score=119.31  Aligned_cols=108  Identities=28%  Similarity=0.268  Sum_probs=81.3

Q ss_pred             CCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194          407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL  486 (558)
Q Consensus       407 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  486 (558)
                      ..+.+++++|.++ .+|..+  .++|++|++++|.+++..|..+..               +++|++|+|++|++++..+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~---------------l~~L~~L~Ls~N~l~~l~~   71 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDR---------------LTQLTRLDLDNNQLTVLPA   71 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT---------------CTTCSEEECCSSCCCCCCT
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcC---------------cccCCEEECCCCCcCccCh
Confidence            3578888888887 456543  578888888888888766665543               7788888888888887666


Q ss_pred             hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCccc
Q 048194          487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRA  532 (558)
Q Consensus       487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  532 (558)
                      ..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++..
T Consensus        72 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           72 GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             hhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            6677888888888888888865555677888888888888877644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=2e-12  Score=129.26  Aligned_cols=250  Identities=14%  Similarity=0.158  Sum_probs=136.7

Q ss_pred             ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhH
Q 048194          247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWI  324 (558)
Q Consensus       247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~  324 (558)
                      .++...|.++ +|+.+.+..+ ++...... |.++ +|+.+.+.+ .++.|+.  |..|++|+.+++++|.++. ++...
T Consensus       126 ~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a-F~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~a  199 (401)
T 4fdw_A          126 SIPKDAFRNS-QIAKVVLNEG-LKSIGDMA-FFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPAST  199 (401)
T ss_dssp             EECTTTTTTC-CCSEEECCTT-CCEECTTT-TTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTT
T ss_pred             EehHhhcccC-CccEEEeCCC-ccEECHHh-cCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhh
Confidence            4444555553 5677766654 43333322 4443 577777765 5565655  6677777777777776653 33332


Q ss_pred             HhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCC-CC
Q 048194          325 WRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP-DT  401 (558)
Q Consensus       325 ~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p-~~  401 (558)
                      ...  .+|+.+.+..+ ++.+...  ..|++|+.+++..+ +.                               .++ ..
T Consensus       200 F~~--~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------------------------~I~~~a  244 (401)
T 4fdw_A          200 FVY--AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------------------------TIGQEA  244 (401)
T ss_dssp             TTT--CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------------------------EECTTT
T ss_pred             Eee--cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------------------------Cccccc
Confidence            222  23777777643 4443332  33677777777654 11                               111 12


Q ss_pred             CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      |.. ++|+.+.+. +.++......|.+|++|+.+.+.+|.+.....          ..+....+..+++|+.+++. +.+
T Consensus       245 F~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~----------~~I~~~aF~~c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          245 FRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPE----------AMIHPYCLEGCPKLARFEIP-ESI  311 (401)
T ss_dssp             TTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTT----------CEECTTTTTTCTTCCEECCC-TTC
T ss_pred             ccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcc----------cEECHHHhhCCccCCeEEeC-Cce
Confidence            222 456666663 33443445566666666666666554431000          00011122336666666666 335


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCC-CCCEEeCcCCc
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY-FLSYLNLSYNQ  552 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~n~  552 (558)
                      +......|.+|++|+.+.|..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            5555666777777777777544 554555667777 777777777776655555566663 56777776554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.44  E-value=7.6e-12  Score=125.47  Aligned_cols=217  Identities=13%  Similarity=0.097  Sum_probs=145.1

Q ss_pred             cCCCCCCCEEecCCCCCCCCCC--CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccC
Q 048194          278 YSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALR  355 (558)
Q Consensus       278 ~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~  355 (558)
                      |..+.+|+.+.+.++ ++.++.  +..+.+|+.+++..+ +.......+.....  |+.+.+..+...-......+..|+
T Consensus       158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~--L~~i~~~~~~~~i~~~~~~~~~l~  233 (394)
T 4fs7_A          158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL--LENMEFPNSLYYLGDFALSKTGVK  233 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT--CCBCCCCTTCCEECTTTTTTCCCC
T ss_pred             hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccc--cceeecCCCceEeehhhcccCCCc
Confidence            778889999998755 445655  788888888888765 32222233333333  555555443322111112233444


Q ss_pred             EEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEE
Q 048194          356 FIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVL  435 (558)
Q Consensus       356 ~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  435 (558)
                      .+.+..                     ..-.          .-...+..+..++.+.+..+... .....+..++.++.+
T Consensus       234 ~i~ip~---------------------~~~~----------i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~  281 (394)
T 4fs7_A          234 NIIIPD---------------------SFTE----------LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKV  281 (394)
T ss_dssp             EEEECT---------------------TCCE----------ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEE
T ss_pred             eEEECC---------------------Ccee----------cccccccccccceeEEcCCCcce-eecccccccccccee
Confidence            443322                     1110          11234667788999998877543 566678888999988


Q ss_pred             ECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccC
Q 048194          436 NLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGN  515 (558)
Q Consensus       436 ~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  515 (558)
                      ....+.+.    ..              .+..+.+|+.+.+..+ ++......|.++.+|+.+++.++ ++.....+|.+
T Consensus       282 ~~~~~~i~----~~--------------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  341 (394)
T 4fs7_A          282 IYGSVIVP----EK--------------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG  341 (394)
T ss_dssp             EECSSEEC----TT--------------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred             ccCceeec----cc--------------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence            88765432    11              1223788999999765 66566788999999999999854 76556788999


Q ss_pred             CCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCC
Q 048194          516 LKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN  551 (558)
Q Consensus       516 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n  551 (558)
                      +.+|+.+++..+ ++......|.++++|+.+++..+
T Consensus       342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            999999999887 76667788999999999999765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=7.2e-12  Score=125.17  Aligned_cols=238  Identities=13%  Similarity=0.162  Sum_probs=109.7

Q ss_pred             CCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194           90 LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        90 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  169 (558)
                      +..++.+.+.++ +... -...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .++...|.++++|+.
T Consensus       112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            355555555432 3222 23445543 4666666544 433334445442 466666654 333 333234566666666


Q ss_pred             EEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194          170 AVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ  249 (558)
Q Consensus       170 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  249 (558)
                      +++.+|.++. ++.......+|+.+.+..+ +.......|                   ..+++|+.+++..+ ++ .++
T Consensus       185 l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF-------------------~~~~~L~~l~l~~~-l~-~I~  241 (401)
T 4fdw_A          185 ADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAF-------------------LKTSQLKTIEIPEN-VS-TIG  241 (401)
T ss_dssp             EECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTT-------------------TTCTTCCCEECCTT-CC-EEC
T ss_pred             eecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHh-------------------hCCCCCCEEecCCC-cc-Ccc
Confidence            6666655552 3322222456666666533 332222222                   44555555555443 22 344


Q ss_pred             hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-----CCCC--CCCCCCCCEEecCCCcccccCCh
Q 048194          250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-----EIPN--LKNQSQLQYLYLSENQISREIPN  322 (558)
Q Consensus       250 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~--~~~~~~L~~L~l~~n~l~~~~~~  322 (558)
                      ...|.+ .+|+.+.+. +.++...... |.++++|+.+.+.++.+.     .|+.  |..+++|+.+++.+ .+......
T Consensus       242 ~~aF~~-~~L~~i~lp-~~i~~I~~~a-F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~  317 (401)
T 4fdw_A          242 QEAFRE-SGITTVKLP-NGVTNIASRA-FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG  317 (401)
T ss_dssp             TTTTTT-CCCSEEEEE-TTCCEECTTT-TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred             cccccc-CCccEEEeC-CCccEEChhH-hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence            444444 455555552 2233222222 555555555555554443     3443  55555555555553 23322233


Q ss_pred             hHHhhccccceEEEcCCccccccCCC--CCCCccCEEEcccccCc
Q 048194          323 WIWRVSVVGLHCLNLSHNFLVGFQAP--YSIPALRFIDLISNQLR  365 (558)
Q Consensus       323 ~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~L~~L~l~~n~~~  365 (558)
                      .|..+..  |+.+.+..+ ++.+...  ..+ +|+.+++.+|...
T Consensus       318 aF~~c~~--L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          318 LLGGNRK--VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTTTCCS--CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             hhcCCCC--ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            3333333  555555433 3332222  224 5666666555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=5.7e-13  Score=116.93  Aligned_cols=106  Identities=25%  Similarity=0.231  Sum_probs=80.3

Q ss_pred             CCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCch
Q 048194          408 LQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILE  487 (558)
Q Consensus       408 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  487 (558)
                      -+.+++++|.++ .+|..+  .++|++|++++|.+++..|..+..               +++|++|+|++|++++..+.
T Consensus        14 ~~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~---------------l~~L~~L~Ls~N~l~~i~~~   75 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDH---------------LVNLQQLYFNSNKLTAIPTG   75 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSCCCCCCTT
T ss_pred             CcEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcC---------------CcCCCEEECCCCCCCccChh
Confidence            467888888886 566543  578888888888888776666544               77888888888888876666


Q ss_pred             hhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          488 DVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       488 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      .|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus        76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            67788888888888888885555557888888888888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.5e-12  Score=113.82  Aligned_cols=108  Identities=23%  Similarity=0.245  Sum_probs=90.8

Q ss_pred             CCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194          374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA  453 (558)
Q Consensus       374 ~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~  453 (558)
                      +.+.+++++|.++          .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.. 
T Consensus        10 ~~~~l~~s~n~l~----------~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~-   76 (170)
T 3g39_A           10 SGTTVDCSGKSLA----------SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-   76 (170)
T ss_dssp             ETTEEECTTSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-
T ss_pred             CCCEEEeCCCCcC----------ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC-
Confidence            4678999999988          5666553  77999999999999888888999999999999999998665544433 


Q ss_pred             eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccc
Q 048194          454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS  508 (558)
Q Consensus       454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  508 (558)
                                    +++|++|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus        77 --------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           77 --------------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             --------------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                          88999999999999987777799999999999999998754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=3.6e-15  Score=134.46  Aligned_cols=131  Identities=21%  Similarity=0.212  Sum_probs=109.6

Q ss_pred             CCCCEEECcCCcCCccCCc------ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          406 CLLQTLDLNGNRPQGTVPK------SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       406 ~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+               ..+++|++|++++|
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~---------------~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL---------------SGMENLRILSLGRN   80 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH---------------HHHTTCCEEEEEEE
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc---------------ccCCCCCEEECCCC
Confidence            4466666666666666555      89999999999999999986 44 33               34899999999999


Q ss_pred             cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch-hhhcCCCCCCEEeCcCCcCeee
Q 048194          480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP-SQLASLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  556 (558)
                      .++ .+|..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.
T Consensus        81 ~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           81 LIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             Ccc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            999 467778888999999999999995 55 68899999999999999985433 5789999999999999999775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=3e-12  Score=112.37  Aligned_cols=107  Identities=21%  Similarity=0.223  Sum_probs=90.5

Q ss_pred             CCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194          374 NPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA  453 (558)
Q Consensus       374 ~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~  453 (558)
                      .-+.+++++|.+.          .+|..+.  ++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+.  
T Consensus        13 ~~~~l~~~~n~l~----------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~--   78 (174)
T 2r9u_A           13 DQTLVNCQNIRLA----------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--   78 (174)
T ss_dssp             CSSEEECCSSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred             CCcEEEeCCCCCC----------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC--
Confidence            3578999999987          6676554  7899999999999988888999999999999999999875444443  


Q ss_pred             eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc
Q 048194          454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG  507 (558)
Q Consensus       454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  507 (558)
                                   .+++|++|+|++|.+++..+..|..+++|+.|++++|++..
T Consensus        79 -------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           79 -------------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             -------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             -------------CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                         38899999999999997766679999999999999999984

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2.8e-13  Score=134.10  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=19.5

Q ss_pred             CCCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCc
Q 048194          406 CLLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFS  443 (558)
Q Consensus       406 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~  443 (558)
                      ++|++|++++|.+++.    ++..+..+++|++|+|++|.++
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            3455666666655432    2233344555555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.8e-13  Score=135.44  Aligned_cols=186  Identities=15%  Similarity=0.087  Sum_probs=109.8

Q ss_pred             CCccCEEEcccccCccc--------CCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccC
Q 048194          351 IPALRFIDLISNQLRGN--------IHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTV  422 (558)
Q Consensus       351 ~~~L~~L~l~~n~~~~~--------~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~  422 (558)
                      ++.|+.|++++|.++..        +.....+|+.|++++|.+++..        +......+.+|++|++++|.+++..
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~--------~~~l~~~L~~L~~L~Ls~n~l~~~~  142 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG--------LRTLLPVFLRARKLGLQLNSLGPEA  142 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH--------HHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH--------HHHHHHHHHhccHhhcCCCCCCHHH
Confidence            56788999999988732        1122357888888888775321        1111122345778888888776543


Q ss_pred             Cccc-----ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccC----chhhcccC
Q 048194          423 PKSI-----AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPI----LEDVGLLK  493 (558)
Q Consensus       423 ~~~l-----~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~  493 (558)
                      ...+     ...++|++|++++|.+++.....+           .......++|++|+|++|.+++..    ...+..++
T Consensus       143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-----------~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL-----------MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH-----------HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHhcCCccceeeCCCCCCChHHHHHH-----------HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence            3333     235678888888887753211111           112234667888888888776532    34456677


Q ss_pred             CCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcccchhhhcCCC---C--CCEEe--CcCCcCee
Q 048194          494 SLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSRAIPSQLASLY---F--LSYLN--LSYNQLEG  555 (558)
Q Consensus       494 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~--L~~L~--l~~n~l~~  555 (558)
                      +|++|+|++|.|++.    ++..+...++|++|||++|.++......+..+.   .  |+.+.  +.+|.+++
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            788888888877643    334455667788888888887765554444332   1  55555  55555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.21  E-value=3.5e-09  Score=106.01  Aligned_cols=132  Identities=12%  Similarity=0.143  Sum_probs=82.2

Q ss_pred             CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      ..|..+..|+.+.+..+... .....+.++++|+.+.+.. .++......+               ..+.+|+++++..+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF---------------~~c~~L~~i~lp~~  321 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVF---------------AGCISLKSIDIPEG  321 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTT---------------TTCTTCCEEECCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceee---------------cCCCCcCEEEeCCc
Confidence            34666777777777655432 4556677788888888753 3332222222               23777888888654


Q ss_pred             cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 048194          480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL  553 (558)
Q Consensus       480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l  553 (558)
                       ++......|.+|.+|+++.+..+ ++.....+|.++++|+.+++.++...   ...+.....|+.+.+..+.+
T Consensus       322 -v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          322 -ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             -ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence             55556678888999999998754 66455677888999999999887653   24566778888888877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=9e-11  Score=115.57  Aligned_cols=105  Identities=20%  Similarity=0.169  Sum_probs=87.4

Q ss_pred             CEEECcCC-cCCccCCcccccCCCCCEEECCC-CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc
Q 048194          409 QTLDLNGN-RPQGTVPKSIAKCKMLEVLNLGN-NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL  486 (558)
Q Consensus       409 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  486 (558)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..+..               +++|+.|+|++|++++..+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~---------------l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRG---------------LGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS---------------CCCCSEEECCSSCCCEECT
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc---------------ccCCCEEECCCCccceeCH
Confidence            46789988 888 5777 99999999999996 9998776666644               8899999999999998888


Q ss_pred             hhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcc
Q 048194          487 EDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       487 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      ..|+.+++|+.|+|++|+|++..+..+..++ |+.|+|.+|.+..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            8899999999999999999865555555555 9999999999874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.13  E-value=1.8e-08  Score=100.73  Aligned_cols=109  Identities=11%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      ..|..+..|+.+.+.. .++......|.+|.+|+.+.+..+ ++......+               ..+.+|+++.+..+
T Consensus       282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF---------------~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF---------------AGCEQLERIAIPSS  344 (394)
T ss_dssp             TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT---------------TTCTTCCEEEECTT
T ss_pred             cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh---------------hCCCCCCEEEECcc
Confidence            3466677788888853 455455567778888888888653 333222233               33788888888644


Q ss_pred             cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcC
Q 048194          480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL  529 (558)
Q Consensus       480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l  529 (558)
                       ++......|.+|++|+.+++.++....   .++.....|+.+.+..|.+
T Consensus       345 -v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          345 -VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             -CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             -cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence             665667789999999999999876541   4577788899888877755

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.9e-10  Score=113.27  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=92.7

Q ss_pred             CcEEEccCC-cccccCCCCCccCCCCCCCCCCCCCCEEECcC-CcCCccCCcccccCCCCCEEECCCCcCcccCCccccC
Q 048194          375 PIYIDFSNN-NFTSSIPADTVNGTLPDTFPRNCLLQTLDLNG-NRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD  452 (558)
Q Consensus       375 l~~l~l~~n-~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~  452 (558)
                      -..++++++ .++          .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+++..|..+..
T Consensus        10 ~~~v~~~~~n~l~----------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~   78 (347)
T 2ifg_A           10 SSGLRCTRDGALD----------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF   78 (347)
T ss_dssp             SSCEECCSSCCCT----------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred             CCEEEcCCCCCCC----------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence            356788887 787          6888 99999999999996 9999888889999999999999999999888776654


Q ss_pred             ceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcc
Q 048194          453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG  507 (558)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  507 (558)
                                     +++|+.|+|++|++++..+..|..++ |+.|+|.+|.+..
T Consensus        79 ---------------l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           79 ---------------TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ---------------CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ---------------CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                           89999999999999987766676666 9999999999984

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.80  E-value=9.5e-07  Score=87.75  Aligned_cols=282  Identities=10%  Similarity=0.082  Sum_probs=133.6

Q ss_pred             CCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCC
Q 048194          229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQL  306 (558)
Q Consensus       229 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L  306 (558)
                      ....+|+.+.+.. .++ .++..+|.++.+|+.+.+..+ ++...... |.++ .|+.+.+.. .++.+..  +.. .+|
T Consensus        43 ~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a-F~~c-~l~~i~~~~-~l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           43 KDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGA-FADT-KLQSYTGME-RVKKFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTT-TTTC-CCCEEEECT-TCCEECTTTTTT-CCC
T ss_pred             ccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhh-hcCC-CCceEECCc-eeeEeccceecc-CCc
Confidence            3445677777754 243 666677888888888888654 44333333 6665 577777654 3555655  444 378


Q ss_pred             CEEecCCCcccccCChhHHhhccccceEEEcCCccccccC--CCCCCCccCEEEcccccCcccC---------------C
Q 048194          307 QYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNI---------------H  369 (558)
Q Consensus       307 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~l~~n~~~~~~---------------~  369 (558)
                      +.+.+..+.. ......+...   .++.+.+..+ ++...  ....+..++.+.+..+......               .
T Consensus       116 ~~i~lp~~~~-~i~~~~F~~~---~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          116 DDFEFPGATT-EIGNYIFYNS---SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             SEEECCTTCC-EECTTTTTTC---CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             ccccCCCccc-cccccccccc---eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            8888866532 1222222221   2554444332 11111  1123555665555443221000               0


Q ss_pred             CCCCCCcEEEccCCccccc-------------CCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194          370 QLPNNPIYIDFSNNNFTSS-------------IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN  436 (558)
Q Consensus       370 ~~~~~l~~l~l~~n~~~~~-------------~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  436 (558)
                      .....+..+.+......-.             .........-...+..+..|+.+.+..+ ++......+.++.+|+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            0001122222111110000             0000000011122333444444444433 2223333444444555544


Q ss_pred             CCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCC
Q 048194          437 LGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNL  516 (558)
Q Consensus       437 l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  516 (558)
                      +..+ +..               .....+..+++|+.+.+.++.++......|.+|.+|+.+.|..+ ++.....+|.++
T Consensus       270 l~~~-i~~---------------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          270 FYAK-VKT---------------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             ECCC-CSE---------------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cccc-cee---------------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            4322 111               11122334677777777776666556667777777777777643 543445567777


Q ss_pred             CCCCeecCCCCcCcccchhhhcCCC
Q 048194          517 KRLESLDLSMNNLSRAIPSQLASLY  541 (558)
Q Consensus       517 ~~L~~L~L~~N~l~~~~~~~~~~l~  541 (558)
                      .+|+.+.+..+ ++.+....|.+..
T Consensus       333 ~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          333 KALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCCCEEEECCc-cCEEchhHhhCCC
Confidence            77777777554 4444445565543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=7.1e-09  Score=101.52  Aligned_cols=104  Identities=17%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCCCccc-c-------ccCcccccCCCCCCEEECCCCCCCC--------CccchhhcCCCCCCEEeCcCCcC
Q 048194           65 GHVIGLDLSTESISG-G-------IENAAILFSLHYLRSLNLARTSFNG--------TQISSKLANISSLTYLNLSDAGF  128 (558)
Q Consensus        65 ~~v~~L~l~~~~~~~-~-------~~~~~~~~~l~~L~~L~L~~n~~~~--------~~~~~~~~~l~~L~~L~L~~n~l  128 (558)
                      .+|+.|.+......+ .       +..  .+..+++|+.|.+.......        ..+...+..+|+|+.|+|+++.-
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~--s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~  184 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVE--NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN  184 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHT--THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHH--hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence            467777776554332 1       111  24567788888876543211        11445566777788888777631


Q ss_pred             ccCCChhccCCCCCcEEecccccccccc-cchhhcCCCCccEEEcc
Q 048194          129 AGQIPVQISRMARLVALDFSFNQFSGSI-SSIRWEHLLNLVCAVLS  173 (558)
Q Consensus       129 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~  173 (558)
                      . .++. +. +++|++|++..+.+.... ..+....+++|++|+|+
T Consensus       185 l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          185 L-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             C-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             c-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            1 2333 32 677777777777665433 22222356777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=5.9e-09  Score=102.11  Aligned_cols=137  Identities=17%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             CCCCCEEECcCCcCCccCCcccc--cCCCCCEEECCCC--cCcccC-CccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          405 NCLLQTLDLNGNRPQGTVPKSIA--KCKMLEVLNLGNN--QFSDKF-PCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       405 ~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n--~i~~~~-p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      .++|++|++..+.+.......+.  .+|+|+.|+|+.+  ...+.. ...+..         .-....+++|+.|+|++|
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~---------~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP---------LFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG---------GSCTTTCTTCCEEEEESC
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH---------HHhcCCCCCcCEEeCCCC
Confidence            56788888888777654444444  6788888887532  211110 000000         000023678888888888


Q ss_pred             cccccCchhhc---ccCCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcccchhhhcC-CCCCCEEeCcCC
Q 048194          480 NFKGPILEDVG---LLKSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSRAIPSQLAS-LYFLSYLNLSYN  551 (558)
Q Consensus       480 ~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~n  551 (558)
                      .+++..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++...-..+.. +  ...++++++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence            77654333332   477888888888888754    3344456788888888888887655444443 2  356777766


Q ss_pred             c
Q 048194          552 Q  552 (558)
Q Consensus       552 ~  552 (558)
                      +
T Consensus       341 ~  341 (362)
T 2ra8_A          341 Q  341 (362)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=3e-06  Score=84.11  Aligned_cols=102  Identities=15%  Similarity=0.109  Sum_probs=77.9

Q ss_pred             CCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       400 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      ..+..+.+|+.+.+..+ +.......+..|++|+.+.+.++.++......+..               +.+|+.++|..+
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~---------------c~~L~~i~lp~~  320 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD---------------CVKLSSVTLPTA  320 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT---------------CTTCCEEECCTT
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC---------------CCCCCEEEcCcc
Confidence            45777889999999765 55455667899999999999988877554444443               899999999754


Q ss_pred             cccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCC
Q 048194          480 NFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL  519 (558)
Q Consensus       480 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  519 (558)
                       ++......|.+|.+|+++.+..+ ++.....+|.++..+
T Consensus       321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          321 -LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             -CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             -ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence             66666788999999999999865 664556677776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=4.9e-09  Score=92.66  Aligned_cols=86  Identities=16%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             ccceEEECCCCccccc----CchhhcccCCCCeeeCcCCcCccc----ccccccCCCCCCeecC--CCCcCcccc----h
Q 048194          469 NIFTSIDFSTNNFKGP----ILEDVGLLKSLYGLNLSHNALTGS----IPSSFGNLKRLESLDL--SMNNLSRAI----P  534 (558)
Q Consensus       469 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~~~----~  534 (558)
                      ++|++|+|++|.+...    +...+...++|++|+|++|.|.+.    +...+...+.|++|+|  ++|.++...    .
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3444444444444322    122233345555555555555532    2344455555666666  556655332    2


Q ss_pred             hhhcCCCCCCEEeCcCCcCe
Q 048194          535 SQLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       535 ~~~~~l~~L~~L~l~~n~l~  554 (558)
                      +.+...++|++|++++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            33444456666666666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=1.6e-08  Score=89.31  Aligned_cols=120  Identities=14%  Similarity=0.202  Sum_probs=90.3

Q ss_pred             CCCCCCCCCEEECcCC-cCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEE
Q 048194          401 TFPRNCLLQTLDLNGN-RPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSID  475 (558)
Q Consensus       401 ~~~~~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~  475 (558)
                      .+...+.|++|++++| .+...    +...+...++|++|+|++|.+.+.....+           .......++|++|+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l-----------~~~L~~n~~L~~L~   99 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL-----------AEMLKVNNTLKSLN   99 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH-----------HHHHHHCSSCCEEE
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH-----------HHHHHhCCCcCEEE
Confidence            3456778999999999 88753    44556778899999999999875332221           12234457899999


Q ss_pred             CCCCccccc----CchhhcccCCCCeeeC--cCCcCccc----ccccccCCCCCCeecCCCCcCcc
Q 048194          476 FSTNNFKGP----ILEDVGLLKSLYGLNL--SHNALTGS----IPSSFGNLKRLESLDLSMNNLSR  531 (558)
Q Consensus       476 Ls~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~  531 (558)
                      |++|.++..    +...+...++|++|+|  ++|.|...    +...+...+.|+.|+|++|.+..
T Consensus       100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            999999864    3455677889999999  88999854    34556677999999999999863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=4.7e-08  Score=90.68  Aligned_cols=80  Identities=25%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             hhhccceEEECCCCccccc--CchhhcccCCCCeeeCcCCcCcccccccccCCC--CCCeecCCCCcCcccch-------
Q 048194          466 KILNIFTSIDFSTNNFKGP--ILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLK--RLESLDLSMNNLSRAIP-------  534 (558)
Q Consensus       466 ~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~-------  534 (558)
                      +.+++|++|+|++|.+++.  ++..++.+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4578999999999999873  346677899999999999999854  3344444  89999999999986554       


Q ss_pred             hhhcCCCCCCEEe
Q 048194          535 SQLASLYFLSYLN  547 (558)
Q Consensus       535 ~~~~~l~~L~~L~  547 (558)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3466788888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=8.2e-08  Score=82.46  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             CCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc-ccccCchhhccc----CCCCeeeCcCCc
Q 048194          430 KMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN-FKGPILEDVGLL----KSLYGLNLSHNA  504 (558)
Q Consensus       430 ~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~l~~n~  504 (558)
                      ..|+.||+++|.+++..-.               ....+++|++|+|++|. +++.....++.+    ++|++|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~---------------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD---------------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG---------------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHH---------------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            4677777777776643222               22347777777777774 665444455543    367777777764


Q ss_pred             -CcccccccccCCCCCCeecCCCCc
Q 048194          505 -LTGSIPSSFGNLKRLESLDLSMNN  528 (558)
Q Consensus       505 -l~~~~~~~l~~l~~L~~L~L~~N~  528 (558)
                       |++..-..+.++++|+.|+|++|.
T Consensus       126 ~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          126 NVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             cCCHHHHHHHhcCCCCCEEECCCCC
Confidence             666555566677777777777774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=5e-07  Score=83.77  Aligned_cols=80  Identities=23%  Similarity=0.253  Sum_probs=56.9

Q ss_pred             ccCCCCCEEECCCCcCccc--CCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccC--CCCeeeCcC
Q 048194          427 AKCKMLEVLNLGNNQFSDK--FPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLK--SLYGLNLSH  502 (558)
Q Consensus       427 ~~l~~L~~L~l~~n~i~~~--~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~l~~  502 (558)
                      .++++|+.|+|++|.+++.  +|..               ...+++|+.|+|++|.+++.  ..+..+.  +|++|+|++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~---------------~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~  229 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSI---------------VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDG  229 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTH---------------HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTT
T ss_pred             hhCCCCCEEECCCCCCCCCccchhH---------------HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccC
Confidence            5678888888888888752  2222               23578888888888888764  3444455  888888888


Q ss_pred             CcCccccc-------ccccCCCCCCeec
Q 048194          503 NALTGSIP-------SSFGNLKRLESLD  523 (558)
Q Consensus       503 n~l~~~~~-------~~l~~l~~L~~L~  523 (558)
                      |.+.+.+|       ..+..+++|+.||
T Consensus       230 Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          230 NSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             STTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CcCccccCcchhHHHHHHHHCcccCeEC
Confidence            88876555       2356778888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=1.5e-06  Score=74.66  Aligned_cols=94  Identities=12%  Similarity=0.072  Sum_probs=72.5

Q ss_pred             CCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCc-CcccCCccccCceeeccccchhhhhh----hccce
Q 048194          398 LPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ-FSDKFPCSLYDAPITIKGLDIKLQKI----LNIFT  472 (558)
Q Consensus       398 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~~~~~~~~~~~~----~~~L~  472 (558)
                      +|.....-..|+.||++++.++......+..+++|+.|+|++|. +++.               .+.....    .++|+
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~---------------gL~~L~~~~~~~~~L~  117 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG---------------CLERLSQLENLQKSML  117 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH---------------HHHHHHTCHHHHHHCC
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH---------------HHHHHHhcccccCCCC
Confidence            44443333569999999999987777778899999999999995 5542               2222322    35799


Q ss_pred             EEECCCCc-ccccCchhhcccCCCCeeeCcCCc-Cc
Q 048194          473 SIDFSTNN-FKGPILEDVGLLKSLYGLNLSHNA-LT  506 (558)
Q Consensus       473 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~  506 (558)
                      +|+|++|. ++......+..+++|+.|++++|. ++
T Consensus       118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            99999985 887777788899999999999996 55

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.48  E-value=6.2e-05  Score=65.85  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             CCCCCEEECcCC-cCCcc----CCcccccCCCCCEEECCCCcCcc
Q 048194          405 NCLLQTLDLNGN-RPQGT----VPKSIAKCKMLEVLNLGNNQFSD  444 (558)
Q Consensus       405 ~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~i~~  444 (558)
                      -+.|++|+|++| .+...    +.+.+..-..|+.|+|++|.+.+
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd   84 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD   84 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence            345666666553 45432    33344444555556665555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=6.4e-05  Score=65.75  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=79.2

Q ss_pred             CcccccCCCCCEEECCCC-cCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc----hhhcccCCCCe
Q 048194          423 PKSIAKCKMLEVLNLGNN-QFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL----EDVGLLKSLYG  497 (558)
Q Consensus       423 ~~~l~~l~~L~~L~l~~n-~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~  497 (558)
                      ...+.+-+.|+.|+|++| .|.+.....+           .+.+..-+.|+.|+|++|.+.....    ..+..-+.|++
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~l-----------a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~  102 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSL-----------IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRV  102 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHH-----------HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCE
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHH-----------HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCe
Confidence            334456678899999885 6653322111           1223335678999999998875433    33445688999


Q ss_pred             eeCcCCcCccc----ccccccCCCCCCeecCCCC---cCccc----chhhhcCCCCCCEEeCcCCcCe
Q 048194          498 LNLSHNALTGS----IPSSFGNLKRLESLDLSMN---NLSRA----IPSQLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       498 L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~~----~~~~~~~l~~L~~L~l~~n~l~  554 (558)
                      |+|++|+|.+.    +-+++...+.|++|+|++|   .+...    +.+.+..-++|+.|+++.|.+.
T Consensus       103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            99999988753    3345666678999999865   44432    3455666678889988877643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.003  Score=51.38  Aligned_cols=39  Identities=18%  Similarity=0.052  Sum_probs=23.5

Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCc
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALT  506 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  506 (558)
                      .++|+.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            345566666666666555555666666666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.67  E-value=0.003  Score=51.40  Aligned_cols=57  Identities=21%  Similarity=0.218  Sum_probs=44.7

Q ss_pred             eEEECCCCccc-ccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCc
Q 048194          472 TSIDFSTNNFK-GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS  530 (558)
Q Consensus       472 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  530 (558)
                      ..++-+++.++ ..+|..+  .++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888887 2355443  357999999999999666667888999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	558
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 4e-17
 Identities = 73/397 (18%), Positives = 124/397 (31%), Gaps = 72/397 (18%)

Query: 211 ASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLA 270
           +++   DT I ++++   L   +    +L   N+  TV       L  +  L      + 
Sbjct: 3   SATITQDTPINQIFTDTALA--EKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI- 56

Query: 271 VDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVV 330
             +S     +   L  +N ++ +L +I  LKN ++L  + ++ NQI+   P         
Sbjct: 57  --KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTG 114

Query: 331 GLHCLNLSHNFLVGFQAPYSIPALRFIDLI---------------------------SNQ 363
                N   +                 + I                           +N 
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174

Query: 364 LRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQGT 421
                  + +N +         T+       N  + D  P   L  L  L LNGN+ +  
Sbjct: 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD- 233

Query: 422 VPKSIAKCKMLEVLNLGNNQFSDKFPCS-------LYDAPITIKGLD------------- 461
              ++A    L  L+L NNQ S+  P S       L      I  +              
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292

Query: 462 -------IKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG 514
                  I     L   T +    NN        V  L  L  L  ++N ++    SS  
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 515 NLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           NL  +  L    N +S   P  LA+L  ++ L L+  
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 66/369 (17%), Positives = 117/369 (31%), Gaps = 40/369 (10%)

Query: 96  LNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGS 155
             L +T+   T   + L  +++L    L      G     +  +  L  ++FS NQ +  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 156 ISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR-------- 207
                   L++++        +      +      L   Q+ +     ++          
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 208 ------FSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAK 261
                  + +  ++L                 LT L     + N    +  +  L NL  
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 262 LDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP 321
           L  + N +              L+ L+L   +L++I  L + + L  L L+ NQIS   P
Sbjct: 202 LIATNNQI---SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 258

Query: 322 NWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPI-YIDF 380
                     L  L L  N +        + AL  ++L  NQL           + Y+  
Sbjct: 259 LSGLT----KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 381 SNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNN 440
             NN +   P                 LQ L    N+       S+A    +  L+ G+N
Sbjct: 315 YFNNISDISP-----------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 441 QFSDKFPCS 449
           Q SD  P +
Sbjct: 362 QISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 70/416 (16%), Positives = 120/416 (28%), Gaps = 75/416 (18%)

Query: 90  LHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSF 149
           L  + +L        G +    +  +++LT +N S+       P  +  + +LV +  + 
Sbjct: 43  LDQVTTLQA---DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 150 NQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFS 209
           NQ +         +L  L         +D     +      L    +++      +    
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 210 NASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL 269
                                   LT L     + N    +  +  L NL  L  + N +
Sbjct: 158 Q--------LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 209

Query: 270 AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSV 329
                         L+ L+L   +L++I  L + + L  L L+ NQIS   P        
Sbjct: 210 ---SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT--- 263

Query: 330 VGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPI-YIDFSNNNFTSS 388
             L  L L  N +        + AL  ++L  NQL           + Y+    NN +  
Sbjct: 264 -KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 389 IPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPC 448
            P                 LQ L    N+       S+A    +  L+ G+NQ SD  P 
Sbjct: 323 SP-----------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 449 SLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNA 504
                                                   +  L  +  L L+  A
Sbjct: 369 ----------------------------------------LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 55/304 (18%), Positives = 95/304 (31%), Gaps = 38/304 (12%)

Query: 284 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP-------NWIWRVSVVGLHCLN 336
           +  L      ++ I  ++  + L  +  S NQ++   P         I   +        
Sbjct: 46  VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 105

Query: 337 LSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNG 396
           L++   +     ++        L +      +    N    I   +   +    +     
Sbjct: 106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 165

Query: 397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPIT 456
           T          L+ LD++ N+       +  K   LE L   NNQ SD  P  +      
Sbjct: 166 TDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLDE 223

Query: 457 IKGLDIKLQKI-----LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP- 510
           +     +L+ I     L   T +D + N         +  L  L  L L  N ++   P 
Sbjct: 224 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPL 281

Query: 511 -------------------SSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
                              S   NLK L  L L  NN+S   P  ++SL  L  L  + N
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339

Query: 552 QLEG 555
           ++  
Sbjct: 340 KVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 24  QTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIEN 83
             L L         P + +  +   +  +             ++  L L   +IS     
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 84  AAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLV 143
              + SL  L+ L  A    +     S LAN++++ +L+      +   P  ++ + R+ 
Sbjct: 325 ---VSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 144 ALDFSFN 150
            L  +  
Sbjct: 377 QLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 5e-15
 Identities = 73/336 (21%), Positives = 115/336 (34%), Gaps = 63/336 (18%)

Query: 19  CQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCD--WSGVDCDEAG---HVIGLDLS 73
           C    +  LLQ+K  L  +P++   L  W  +TDCC+  W GV CD       V  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLG-NPTT---LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 74  TESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIP 133
             ++       + L +L YL  L +   +     I   +A ++ L YL ++    +G IP
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 134 VQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQ 193
             +S++  LV LDFS+N  SG++          +       N + G+IP S   F  L  
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFT 177

Query: 194 LQLANN----------------------------QFGGSIPRFSNASSSALDTQIKRVYS 225
               +                                       N     L         
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 226 CLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLE 285
                ++ L  L L +N + GT+    +  L  L  L++S+N+L                
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLC--------------- 281

Query: 286 LLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP 321
                     EIP   N  +      + N+     P
Sbjct: 282 ---------GEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 48/260 (18%), Positives = 89/260 (34%), Gaps = 18/260 (6%)

Query: 305 QLQYLYLSENQISR--EIPNWIWRVSVVGLHCLNLSHNFLVGFQA-PYSIPALRFIDLIS 361
           ++  L LS   + +   IP+ +  +  +    +   +N +         +  L ++ +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT 421
             + G I    +    +   + ++ +           P +      L  +  +GNR  G 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTL------PPSISSLPNLVGITFDGNRISGA 164

Query: 422 VPKSIAKCKMLEV--------LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTS 473
           +P S      L          L             +  D    +   D  +    +  T 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 474 IDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI 533
                 N     L  VGL K+L GL+L +N + G++P     LK L SL++S NNL   I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 534 PSQLASLYFLSYLNLSYNQL 553
           P    +L        + N+ 
Sbjct: 285 PQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 27/291 (9%)

Query: 248 VQLDKILSLGNLAKLDLSYNSLA----VDESSRNYSFSPMLELLNLASCKLREIPNLKNQ 303
           V  D       +  LDLS  +L     +  S  N  +   L +  + +      P +   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQ 363
           +QL YLY++   +S  IP+++ ++  +     + +        +  S+P L  I    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 364 LRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVP 423
           + G I     +   +  S     + +                                  
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD----------------- 203

Query: 424 KSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKG 483
                     +    +  F                  D+    +      +D   N   G
Sbjct: 204 -----LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 484 PILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP 534
            + + +  LK L+ LN+S N L G IP   GNL+R +    + N      P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 53/235 (22%), Positives = 78/235 (33%), Gaps = 19/235 (8%)

Query: 335 LNLSHNFLVG-FQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADT 393
           L+LS   L   +  P S+  L +  L    + G  + +   P  I          I    
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPY--LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 394 VNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA 453
           V+G +PD   +   L TLD + N   GT+P SI+    L  +    N+ S     ++ D+
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS----GAIPDS 168

Query: 454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG------------LNLS 501
             +   L   +    N  T     T         D+                        
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 502 HNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGR 556
                       G  K L  LDL  N +   +P  L  L FL  LN+S+N L G 
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 472 TSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG--SIPSSFGNLKRLESLDLSMN-N 528
            + D     + G + +       +  L+LS   L     IPSS  NL  L  L +    N
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 529 LSRAIPSQLASLYFLSYLNLSYNQ 552
           L   IP  +A L  L YL +++  
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTN 112

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 20/213 (9%)

Query: 354 LRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDL 413
           LR +      L      LP +   +D  NN  T     D         F     L TL L
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD---------FKNLKNLHTLIL 62

Query: 414 NGNRPQGTVPKSIAKCKMLEVLNLGNNQFSD------KFPCSLYDAPITIKGLDIKLQKI 467
             N+     P + A    LE L L  NQ  +      K    L      I  +   +   
Sbjct: 63  INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 468 LNIFTSIDFSTNNFK--GPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525
           LN    ++  TN  K  G        +K L  + ++   +T +IP   G    L  L L 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD 179

Query: 526 MNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558
            N +++   + L  L  L+ L LS+N +     
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 46/265 (17%), Positives = 84/265 (31%), Gaps = 24/265 (9%)

Query: 304 SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGF--QAPYSIPALRFIDLIS 361
                L L  N+I+         +    LH L L +N +      A   +  L  + L  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT 421
           NQL+    ++P     +    N  T    +               ++  L  N  +  G 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVF-------NGLNQMIVVELGTNPLKSSGI 141

Query: 422 VPKSIAKCKMLEVLNLGNNQFSDKFPC------SLYDAPITIKGLDIKLQKILNIFTSID 475
              +    K L  + + +   +            L+     I  +D    K LN    + 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 476 FSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSR---- 531
            S N+        +     L  L+L++N L   +P    + K ++ + L  NN+S     
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 532 --AIPSQLASLYFLSYLNLSYNQLE 554
               P         S ++L  N ++
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 6e-08
 Identities = 50/292 (17%), Positives = 91/292 (31%), Gaps = 21/292 (7%)

Query: 54  CDWSGVDCDEAGHVIGLDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLA 113
           C    V C + G         E +   +              L+L               
Sbjct: 10  CHLRVVQCSDLGL--------EKVPKDLPP--------DTALLDLQNNKITEI-KDGDFK 52

Query: 114 NISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS 173
           N+ +L  L L +   +   P   + + +L  L  S NQ    +     + L  L      
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE 111

Query: 174 DNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASS-SALDTQIKRVYSCLGLRTQ 232
              +  S+   + +  +++         G     F      S +      + +       
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

Query: 233 KLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 292
            LT L L  N +        +  L NLAKL LS+NS++  ++    +   + EL    + 
Sbjct: 172 SLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 293 KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVG 344
            ++    L +   +Q +YL  N IS  I +  +          + S   L  
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 8e-10
 Identities = 47/283 (16%), Positives = 89/283 (31%), Gaps = 34/283 (12%)

Query: 279 SFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCL- 335
                 + + L   ++  +P    +    L  L+L  N ++R        ++++    L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 336 ---NLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD 392
               L       F     +  L        +L   + +      Y+   +N   +     
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-- 146

Query: 393 TVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYD 452
                  DTF     L  L L+GNR      ++      L+ L L  N+ +   P +  D
Sbjct: 147 -------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 453 APITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSS 512
                          L    ++    NN      E +  L++L  L L+ N       + 
Sbjct: 200 ---------------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 513 FGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
                 L+    S + +  ++P +LA         L+ N L+G
Sbjct: 245 -PLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 54/269 (20%), Positives = 80/269 (29%), Gaps = 45/269 (16%)

Query: 287 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
            +     L+ +P     +  Q ++L  N+IS            + +  L+ +    +   
Sbjct: 16  TSCPQQGLQAVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
           A   +  L  +DL  N    ++                              P TF    
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVD-----------------------------PATFHGLG 105

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
            L TL L+    Q   P        L+ L L +N        +  D              
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL------------- 152

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
                T +    N            L SL  L L  N +    P +F +L RL +L L  
Sbjct: 153 --GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 527 NNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
           NNLS      LA L  L YL L+ N    
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 10/229 (4%)

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRT 231
           L  N +      S      L  L L +N             +      +        +  
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 232 QKLTPL-----LLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL 286
                L     L         +       L  L  L L  N+L              L  
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTH 157

Query: 287 LNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVG 344
           L L   ++  +P    +    L  L L +N+++   P+    +  +    L  ++   + 
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 345 FQAPYSIPALRFIDLISNQLRGNIH--QLPNNPIYIDFSNNNFTSSIPA 391
            +A   + AL+++ L  N    +     L         S++    S+P 
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 8/172 (4%)

Query: 103 FNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWE 162
              +   +    +  L  L+L   G     P     +A L  L    N           +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 163 HLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPR-----FSNASSSALD 217
              NL    L  N +     R+      L +L L  N+     P          +     
Sbjct: 152 L-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 218 TQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL 269
             +  + +      + L  L L+ N      +   + +   L K   S + +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA--WLQKFRGSSSEV 260

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 53/336 (15%), Positives = 95/336 (28%), Gaps = 26/336 (7%)

Query: 220 IKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYS 279
           + R+  CL    ++   L L++  L+   +L       +L  L  S NSL          
Sbjct: 29  VSRLRDCL---DRQAHELELNNLGLSSLPEL-----PPHLESLVASCNSLT--------E 72

Query: 280 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH 339
              + + L         +  L +   L       N    ++P       +  +   N S 
Sbjct: 73  LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 132

Query: 340 NFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLP 399
             L          A     L       N+  L       +         +  +++     
Sbjct: 133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 192

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKG 459
                  L     L        + K++             + +    P            
Sbjct: 193 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV- 251

Query: 460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRL 519
               +   L+      +  N     I     L  SL  LN+S+N L   +P+    L+RL
Sbjct: 252 -SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL 309

Query: 520 ESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEG 555
                S N+L+  +P    +   L  L++ YN L  
Sbjct: 310 ---IASFNHLAE-VPELPQN---LKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 232 QKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLA 290
             L  L +S+N L    +L        L +L  S+N L  V E  +N      L+ L++ 
Sbjct: 284 PSLEELNVSNNKLI---ELPA--LPPRLERLIASFNHLAEVPELPQN------LKQLHVE 332

Query: 291 SCKLREIPNLKNQSQLQYLYLS 312
              LRE P++     ++ L ++
Sbjct: 333 YNPLREFPDIP--ESVEDLRMN 352

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 33/206 (16%), Positives = 58/206 (28%), Gaps = 43/206 (20%)

Query: 378 IDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNL 437
           ++    N T+          LP   P++     L L+ N        ++     L  LNL
Sbjct: 15  VNCDKRNLTA----------LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 438 GNNQFSDKFPCSL------------------------------YDAPITIKGLDIKLQKI 467
              + +                                       +   +  L +   + 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN 527
           L     +    N  K      +     L  L+L++N LT         L+ L++L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 528 NLSRAIPSQLASLYFLSYLNLSYNQL 553
           +L   IP      + L +  L  N  
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 20/191 (10%), Positives = 50/191 (26%), Gaps = 15/191 (7%)

Query: 255 SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS 312
            + +  +++    +L    ++          +L+L+   L       L   ++L  L L 
Sbjct: 8   KVASHLEVNCDKRNL----TALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 313 ENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLP 372
             ++++   +              L    L   Q        + +  ++           
Sbjct: 64  RAELTKLQVDG---------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKML 432
                +          +  + +    P        L+ L L  N         +   + L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 433 EVLNLGNNQFS 443
           + L L  N   
Sbjct: 175 DTLLLQENSLY 185

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYN 551
           + S   +N     LT ++P      K    L LS N L     + L     L+ LNL   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 552 Q 552
           +
Sbjct: 66  E 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 22/201 (10%)

Query: 350 SIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPAD----------TVNGTLP 399
            + +   ++     L      LP +   +  S N   +   A            ++    
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 400 DTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQ-----------FSDKFPC 448
                +  L  L              +    +  +  L  +                   
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 449 SLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGS 508
            LY     +K L   L         +  + NN        +  L++L  L L  N+L  +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 509 IPSSFGNLKRLESLDLSMNNL 529
           IP  F     L    L  N  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 7e-07
 Identities = 66/484 (13%), Positives = 119/484 (24%), Gaps = 54/484 (11%)

Query: 70  LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNG---TQISSKLANISSLTYLNLSDA 126
           LD+  E +S     A +L  L   + + L            ISS L    +L  LNL   
Sbjct: 7   LDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 127 GFAGQIPVQISRM-----ARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSI 181
                    + +       ++  L       +G+   +    L  L        S +   
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125

Query: 182 PRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSS 241
              +              +         +A+S      + R        T     +  + 
Sbjct: 126 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 185

Query: 242 NNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLK 301
             +      D    L  L        S    +     +    L  L L S KL ++   +
Sbjct: 186 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 245

Query: 302 NQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLIS 361
               L +       +         +        L    +      A          D  +
Sbjct: 246 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-----ELGDEGA 300

Query: 362 NQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT 421
             L   + +       +   + +FT++  +   +    + F     +    L     +  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 422 VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF 481
                    +L VL L +   SD    SL                               
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT---------------------------- 392

Query: 482 KGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG-----NLKRLESLDLSMNNLSRAIPSQ 536
                  +    SL  L+LS+N L  +               LE L L     S  +  +
Sbjct: 393 -------LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

Query: 537 LASL 540
           L +L
Sbjct: 446 LQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 498 LNLSHNALTGS-IPSSFGNLKRLESLDLSMNNLS----RAIPSQLASLYFLSYLNLSYNQ 552
           L++    L+ +        L++ + + L    L+    + I S L     L+ LNL  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 553 LEG 555
           L  
Sbjct: 67  LGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 468 LNIFTSIDFSTNNFK-GPILEDVGLLKSLYGLNLSHNALTG----SIPSSFGNLKRLESL 522
           L+I  S+D            E + LL+    + L    LT      I S+      L  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 523 DLSMNNLSRAIPSQLASLYFLSYLNLSYNQLEGRFQ 558
           +L  N L       +          +    L+    
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 493 KSLYGLNLSHNALTG----SIPSSFGNLKRLESLDLSMNNLSRAIPSQLAS-----LYFL 543
             L  L L+   ++     S+ ++      L  LDLS N L  A   QL          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 544 SYLNLSYNQLEGRFQ 558
             L L         +
Sbjct: 429 EQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 52/420 (12%), Positives = 104/420 (24%), Gaps = 22/420 (5%)

Query: 142 LVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDG----SIPRSMFEFPMLQQLQLA 197
           + +LD    + S +  +     L       L D  L       I  ++   P L +L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 198 NNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLG 257
           +N+ G              D  +  V   L   + K+  L L +  L G        +L 
Sbjct: 64  SNELG--------------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQIS 317
            L  L   + S  +   +        L        KL+      + +  + L        
Sbjct: 110 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 169

Query: 318 REIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIY 377
                 +    +       L            ++          N             + 
Sbjct: 170 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 229

Query: 378 IDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNL 437
                +N    +    +   L     R   L   +             + + K       
Sbjct: 230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 289

Query: 438 GNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYG 497
                       L    +   G  ++   + +   +    ++           L   +  
Sbjct: 290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349

Query: 498 LNLSHNALTGSIPSSFGNLKRLESLDLSMNNLS----RAIPSQLASLYFLSYLNLSYNQL 553
             L    +             L  L L+  ++S     ++ + L + + L  L+LS N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 369 HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAK 428
            Q  +    +  ++ + + S  +      L  T   N  L+ LDL+ N         + +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSS-----LAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 429 -----CKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDI 462
                  +LE L L +  +S++    L         L +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI------PNLKNQSQLQYLYL 311
           ++  LD+    L+    +         +++ L  C L E         L+    L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 312 SENQISREIPNWI---WRVSVVGLHCLNLSHNF 341
             N++     + +    +     +  L+L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCL--GL 229
           L+   L  ++   + +  ++  L L++N+     P  +      +          +    
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 230 RTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNL 289
              +L  LLL +N L  +  +  ++S   L  L+L  NSL  +E  +      +  + ++
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 23/135 (17%)

Query: 409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKIL 468
           + L L       TV   + +  ++  L+L +N+     P                   + 
Sbjct: 1   RVLHLAHK--DLTVLCHLEQLLLVTHLDLSHNRLRALPPA------------------LA 40

Query: 469 NIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTG-SIPSSFGNLKRLESLDLSMN 527
            +        ++     ++ V  L  L  L L +N L   +      +  RL  L+L  N
Sbjct: 41  ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

Query: 528 NLSR--AIPSQLASL 540
           +L +   I  +LA +
Sbjct: 101 SLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 287 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
           L+LA   L  + +L+    + +L LS N++    P          L  L  S N L    
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNALENVD 59

Query: 347 APYSIPALRFIDLISNQLRG-----NIHQLPNNPIYIDFSNNNFTS 387
              ++P L+ + L +N+L+       +   P   + ++   N+   
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQ 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 39/218 (17%), Positives = 68/218 (31%), Gaps = 8/218 (3%)

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 288
           L +Q +       + ++    L +  S   +  +DLS + + V       S    L+ L+
Sbjct: 20  LLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77

Query: 289 LASCKLRE--IPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
           L   +L +  +  L   S L  L LS      E        S   L  LNLS  F    +
Sbjct: 78  LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 137

Query: 347 APYSIPALRFIDLISNQLRG---NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFP 403
                 A     +    L G   N+ +   + +     N        +  +       F 
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 197

Query: 404 RNCLLQTLDLNG-NRPQGTVPKSIAKCKMLEVLNLGNN 440
           +   LQ L L+            + +   L+ L +   
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 18/145 (12%), Positives = 41/145 (28%), Gaps = 9/145 (6%)

Query: 294 LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPA 353
           + +     N  + + L L   +I   I N     ++     ++ S N +        +  
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIP-VIENLG--ATLDQFDAIDFSDNEIRKLDGFPLLRR 64

Query: 354 LRFIDLISNQLRGNI--HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTL 411
           L+ + + +N++             +      NN    +       +L            L
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI----L 120

Query: 412 DLNGNRPQGTVPKSIAKCKMLEVLN 436
                  +      I K   + VL+
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 511 SSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQL 553
           + + N  R   LDL    +   I +  A+L     ++ S N++
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI 53

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 24/249 (9%), Positives = 58/249 (23%), Gaps = 21/249 (8%)

Query: 287 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQ 346
                 K+ EIP+   ++    L     ++                   +L    +    
Sbjct: 13  FLCQESKVTEIPSDLPRN-AIELRFVLTKLRVIQKGAFS-------GFGDLEKIEISQND 64

Query: 347 APYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNC 406
               I               +     +       +N  + +      +            
Sbjct: 65  VLEVI----------EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 114

Query: 407 LLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQK 466
           +    D++       V   I     +  +   +          L+     I+ +      
Sbjct: 115 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN 174

Query: 467 ILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSM 526
              +        NN +    +          L++S   +         NLK+L +     
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-- 232

Query: 527 NNLSRAIPS 535
            NL + +P+
Sbjct: 233 YNLKK-LPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 9/58 (15%), Positives = 15/58 (25%)

Query: 495 LYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552
                  +N L       F        LD+S   +       L +L  L   +    +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 43/340 (12%), Positives = 100/340 (29%), Gaps = 43/340 (12%)

Query: 229 LRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 288
           +  + L    +++ +         +L   ++ ++ LS N++  + +              
Sbjct: 5   IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAAR------------W 50

Query: 289 LASCKLREIPNLKNQSQLQYLYLSENQISR---EIPNWIWRVSVVGLHCLNLSHNFLVGF 345
           L+         + ++  L+    S+    R   EIP  +  +    L C  L    L   
Sbjct: 51  LSEN-------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103

Query: 346 QAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRN 405
               +                    L +  ++ +       + I        +       
Sbjct: 104 AFGPTAQEPLI------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 157

Query: 406 CLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQ 465
             L+++    NR +    K  AK        L   +             + ++GL    Q
Sbjct: 158 PPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQ 215

Query: 466 KILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPS------SFGNLKRL 519
           ++  +    +  T+     +   +    +L  L L+   L+    +      S      L
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 275

Query: 520 ESLDLSMNNLSRAIPSQLASLYF-----LSYLNLSYNQLE 554
           ++L L  N +       L ++       L +L L+ N+  
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 296 EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALR 355
            I      +    +   ++ ++  +     +  + G+  L+     +   +    +  L 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 356 FIDLISNQL-RGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLN 414
            ++L  NQ+      +       ++ S N   +      +            +     L 
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 415 GNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSI 474
           G      +   + +   +  L    N        +       +  L        +  T++
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL--------SKLTTL 178

Query: 475 DFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS 525
               N      +  +  L +L  ++L +N ++   P    N   L  + L+
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 494 SLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQ 552
            L  L    N ++   P    +L  L  + L  N +S   P  LA+   L  + L+ NQ
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 2/161 (1%)

Query: 254 LSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 313
           +      K++L      +++     S     + L L++  + +I +L     L+ L L  
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79

Query: 314 NQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPAL-RFIDLISNQLRGNIHQLP 372
           N I +         ++  L         L G +   ++  L    + I+N    +     
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 373 NNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL-LQTLD 412
           +    +  + N   +    +           +    L+ LD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 27/193 (13%), Positives = 66/193 (34%), Gaps = 13/193 (6%)

Query: 255 SLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 314
           +     K +L   S+    +    +    ++ +   +  ++ +  ++    +  L+L+ N
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 78

Query: 315 QISREI------PNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNI 368
           +++               +    +  L+   +             +  I+ + +  +   
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 369 HQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCL--LQTLDLNGNRPQGTVPKSI 426
             L NN I      +  T        +  + D  P   L  LQ L L+ N    +  +++
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN--HISDLRAL 196

Query: 427 AKCKMLEVLNLGN 439
           A  K L+VL L +
Sbjct: 197 AGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 258 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLK-NQSQLQYLYLSENQI 316
           + ++  L    L  D    +     +  +LN  S     +  ++ N  +L  L LS N++
Sbjct: 21  DGSQQALDLKGLRSDP---DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 317 SREIPNWIWRVSVVGLHCLNLSHNFLVGFQ--APYSIPALRFIDLISNQLRGNIHQLPNN 374
            R             L  LNLS N L   +         L  + L  N L          
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 375 PIYI 378
              I
Sbjct: 138 ISAI 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	558
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.45

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.8e-37  Score=299.53  Aligned_cols=290  Identities=31%  Similarity=0.474  Sum_probs=206.7

Q ss_pred             CCcHHHHHHHHHHHhhcCCCCCCCcccCCCCCCCCCCC--ccceEeCCC---CCEEEEEcCCCCcccc--ccCcccccCC
Q 048194           18 QCQSDQQTLLLQLKSSLTFDPSSSVKLMQWRQSTDCCD--WSGVDCDEA---GHVIGLDLSTESISGG--IENAAILFSL   90 (558)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~~~---~~v~~L~l~~~~~~~~--~~~~~~~~~l   90 (558)
                      -|.++||+||++||+++.++.    .+++|..++|||.  |.||+|+..   .||++|+|+++++.+.  +|.  .++.+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~----~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~--~l~~L   75 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT----TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG----GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC----cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh--HHhcC
Confidence            489999999999999998653    6899998999995  999999865   4899999999998874  445  78888


Q ss_pred             CCCCEEECCC-CCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccE
Q 048194           91 HYLRSLNLAR-TSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVC  169 (558)
Q Consensus        91 ~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  169 (558)
                      ++|++|+|++ |.+.+. +|..++++++|++|+|++|++.+..+..+..+++|+++++++|.+.+.+|. .+++++.+++
T Consensus        76 ~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCE
T ss_pred             ccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCcccce
Confidence            8888888875 677766 788888888888888888888877777788888888888888887766655 5778888888


Q ss_pred             EEccCCccCccCCccccCCCCC-CEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194          170 AVLSDNSLDGSIPRSMFEFPML-QQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV  248 (558)
Q Consensus       170 L~L~~n~l~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~  248 (558)
                      +++++|.+.+.+|..+..+.++ +.+++++|++++..|..+                   ..+ ....+++..+...+.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~-------------------~~l-~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-------------------ANL-NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-------------------GGC-CCSEEECCSSEEEECC
T ss_pred             eeccccccccccccccccccccccccccccccccccccccc-------------------ccc-cccccccccccccccc
Confidence            8888888877788777777665 778888887777666553                   333 3345777777666554


Q ss_pred             ChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCC-CCCC-CCCCCCCCEEecCCCcccccCChhHHh
Q 048194          249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWR  326 (558)
Q Consensus       249 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~  326 (558)
                      + ..+..+++++.++++++.+.+..+ . +..+++|+.|++++|+++ .+|. ++.+++|++|++++|+++|.+|. +..
T Consensus       214 ~-~~~~~~~~l~~l~~~~~~l~~~~~-~-~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~  289 (313)
T d1ogqa_         214 S-VLFGSDKNTQKIHLAKNSLAFDLG-K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             G-GGCCTTSCCSEEECCSSEECCBGG-G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             c-cccccccccccccccccccccccc-c-cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-ccc
Confidence            4 445666677777777776654433 2 455556666666666655 5555 55556666666666666555553 222


Q ss_pred             hccccceEEEcCCcc
Q 048194          327 VSVVGLHCLNLSHNF  341 (558)
Q Consensus       327 ~~~~~L~~L~ls~n~  341 (558)
                      +..  |+.+++++|+
T Consensus       290 L~~--L~~l~l~~N~  302 (313)
T d1ogqa_         290 LQR--FDVSAYANNK  302 (313)
T ss_dssp             GGG--SCGGGTCSSS
T ss_pred             CCC--CCHHHhCCCc
Confidence            222  4444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=4.2e-28  Score=241.69  Aligned_cols=191  Identities=27%  Similarity=0.296  Sum_probs=125.0

Q ss_pred             CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEE
Q 048194          300 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYID  379 (558)
Q Consensus       300 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  379 (558)
                      ...+++++.+++++|.+++..|.  ....  +|++|++++|.+++......+++|+.+++++|.+++             
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~--~~~~--~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-------------  255 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPL--GILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-------------  255 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGG--GGCT--TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------------
T ss_pred             cccccccceeeccCCccCCCCcc--cccC--CCCEEECCCCCCCCcchhhcccccchhccccCccCC-------------
Confidence            44455555555555555433221  1122  255555555555443322234555555555554431             


Q ss_pred             ccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccc
Q 048194          380 FSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKG  459 (558)
Q Consensus       380 l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~  459 (558)
                                        ++ .+..+++|++|+++++++.+..  .+..++.++.+.+.+|.+.+..             
T Consensus       256 ------------------~~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~-------------  301 (384)
T d2omza2         256 ------------------LA-PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-------------  301 (384)
T ss_dssp             ------------------CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG-------------
T ss_pred             ------------------CC-cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc-------------
Confidence                              11 2455667888888888776432  3667778888888888776421             


Q ss_pred             cchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcC
Q 048194          460 LDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLAS  539 (558)
Q Consensus       460 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  539 (558)
                          ....+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|+.|++++|++++..|  +.+
T Consensus       302 ----~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         302 ----PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             ----GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             ----ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence                1233778888888888888643  47889999999999999883 44 58889999999999999986544  788


Q ss_pred             CCCCCEEeCcCC
Q 048194          540 LYFLSYLNLSYN  551 (558)
Q Consensus       540 l~~L~~L~l~~n  551 (558)
                      +++|++|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            899999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.2e-27  Score=236.47  Aligned_cols=342  Identities=22%  Similarity=0.291  Sum_probs=202.7

Q ss_pred             CCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCcc
Q 048194           89 SLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLV  168 (558)
Q Consensus        89 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  168 (558)
                      .+.+|++|+++++.+.+.   +.+..+++|++|++++|.+++ +| .++++++|++|++++|++. .++  .++++++|+
T Consensus        42 ~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~-~i~--~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA-DIT--PLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG--GGTTCTTCC
T ss_pred             HhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc-ccc--ccccccccc
Confidence            445566666666665542   345566666666666666653 33 2566666666666666665 332  255666666


Q ss_pred             EEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCccc
Q 048194          169 CAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTV  248 (558)
Q Consensus       169 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~  248 (558)
                      .|+++++.+.+..  .......+..+....+.+....+...                   ...............     
T Consensus       114 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~-----  167 (384)
T d2omza2         114 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSG-------------------LTSLQQLSFGNQVTD-----  167 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTT-------------------CTTCSEEEEEESCCC-----
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccc-------------------cccccccccccccch-----
Confidence            6666666554322  12334455555555555432222110                   011111111111100     


Q ss_pred             ChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhc
Q 048194          249 QLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS  328 (558)
Q Consensus       249 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  328 (558)
                       ...+...+.........+......   ....+++++.+++++|.++.++....+++|++|++++|.+.+ + ..+..+.
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~  241 (384)
T d2omza2         168 -LKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-I-GTLASLT  241 (384)
T ss_dssp             -CGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred             -hhhhcccccccccccccccccccc---ccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC-c-chhhccc
Confidence             112333344444444444332211   144556666667776666666555556667777777776653 2 2344444


Q ss_pred             cccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCC
Q 048194          329 VVGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLL  408 (558)
Q Consensus       329 ~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L  408 (558)
                      .  ++.+++++|.+++..+...+++|+.++++++++.+                               ++ .+..+..+
T Consensus       242 ~--L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~-------------------------------~~-~~~~~~~l  287 (384)
T d2omza2         242 N--LTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-------------------------------IS-PLAGLTAL  287 (384)
T ss_dssp             T--CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-------------------------------CG-GGTTCTTC
T ss_pred             c--cchhccccCccCCCCcccccccCCEeeccCcccCC-------------------------------CC-cccccccc
Confidence            3  77777777777666555557777777777776542                               11 24455667


Q ss_pred             CEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchh
Q 048194          409 QTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILED  488 (558)
Q Consensus       409 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  488 (558)
                      +.++++.|.+.+.  ..+..+++++.|++++|.+++..+                 ...+++|++|++++|++++ + ..
T Consensus       288 ~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~-----------------l~~l~~L~~L~L~~n~l~~-l-~~  346 (384)
T d2omza2         288 TNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP-----------------VSSLTKLQRLFFANNKVSD-V-SS  346 (384)
T ss_dssp             SEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG-----------------GGGCTTCCEEECCSSCCCC-C-GG
T ss_pred             ccccccccccccc--cccchhcccCeEECCCCCCCCCcc-----------------cccCCCCCEEECCCCCCCC-C-hh
Confidence            8888888887642  346778888888888888875322                 1337888888888888875 2 36


Q ss_pred             hcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCC
Q 048194          489 VGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMN  527 (558)
Q Consensus       489 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N  527 (558)
                      ++.+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8899999999999999996554  889999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=6.2e-27  Score=226.09  Aligned_cols=248  Identities=27%  Similarity=0.361  Sum_probs=210.4

Q ss_pred             CCCCEEECCCCCCCCC-ccchhhcCCCCCCEEeCcC-CcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCcc
Q 048194           91 HYLRSLNLARTSFNGT-QISSKLANISSLTYLNLSD-AGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLV  168 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  168 (558)
                      .+++.|+|+++.+.+. .+|..++++++|++|+|++ |.++|.+|..|+++++|++|+|++|++.+..+. .+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccchhhhc
Confidence            4688999999999875 3789999999999999997 899999999999999999999999999965555 588999999


Q ss_pred             EEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCC-CEEEcccccCCcc
Q 048194          169 CAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKL-TPLLLSSNNLNGT  247 (558)
Q Consensus       169 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L-~~L~l~~n~l~~~  247 (558)
                      ++++++|.+.+.+|..+.++++|+++++++|.+.+.+|..+                   ..+..+ +.+++++|++++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~-------------------~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-------------------GSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-------------------GCCCTTCCEEECCSSEEEEE
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccc-------------------cccccccccccccccccccc
Confidence            99999999999999999999999999999999998888766                   555554 8899999999876


Q ss_pred             cChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCC-CCCCCCCCCCCEEecCCCcccccCChhHHh
Q 048194          248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE-IPNLKNQSQLQYLYLSENQISREIPNWIWR  326 (558)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  326 (558)
                      .+ ..+..+.. ..+++..+...+..+.. +..++.++.+++.++.++. +|.+..+++|+.|++++|+++|.+|..+..
T Consensus       190 ~~-~~~~~l~~-~~l~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         190 IP-PTFANLNL-AFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             CC-GGGGGCCC-SEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cc-cccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccCccCeecccCChHHhC
Confidence            66 45666654 47999999888777766 7888999999999998884 444888999999999999999999999988


Q ss_pred             hccccceEEEcCCccccccCCCC-CCCccCEEEccccc
Q 048194          327 VSVVGLHCLNLSHNFLVGFQAPY-SIPALRFIDLISNQ  363 (558)
Q Consensus       327 ~~~~~L~~L~ls~n~l~~~~~~~-~~~~L~~L~l~~n~  363 (558)
                      ++.  |++|+|++|++++..+.. .+.+|+.+++++|+
T Consensus       267 L~~--L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         267 LKF--LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CTT--CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CCC--CCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            766  888888888887654443 36667666676665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.2e-23  Score=198.99  Aligned_cols=279  Identities=20%  Similarity=0.218  Sum_probs=186.0

Q ss_pred             CCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcc
Q 048194          190 MLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSL  269 (558)
Q Consensus       190 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  269 (558)
                      ..++++-++..++ .+|..+                     .+++++|++++|+++ .++...|.++++|++|++++|.+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---------------------~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~   67 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---------------------PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI   67 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---------------------CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCEEEecCCCCC-ccCCCC---------------------CCCCCEEECcCCcCC-CcChhHhhccccccccccccccc
Confidence            4567777777776 455432                     257899999999987 77766788899999999999998


Q ss_pred             cccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCC-
Q 048194          270 AVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAP-  348 (558)
Q Consensus       270 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-  348 (558)
                      ....+.. +..++.|+.|++++|+++.+|. .....++.|++.+|.+.+..+..+.....  ...++...+........ 
T Consensus        68 ~~i~~~~-f~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~--~~~l~~~~n~~~~~~~~~  143 (305)
T d1xkua_          68 SKISPGA-FAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQ--MIVVELGTNPLKSSGIEN  143 (305)
T ss_dssp             CCBCTTT-TTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTT--CCEEECCSSCCCGGGBCT
T ss_pred             cccchhh-hhCCCccCEecccCCccCcCcc-chhhhhhhhhccccchhhhhhhhhhcccc--ccccccccccccccCCCc
Confidence            8666655 8888999999999999988886 23457888888888886544433433333  66666666654332211 


Q ss_pred             ---CCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcc
Q 048194          349 ---YSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKS  425 (558)
Q Consensus       349 ---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~  425 (558)
                         ..+++|+.+++++|.+.                               .+|..  .+++|++|++++|...+..+..
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~-------------------------------~l~~~--~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNIT-------------------------------TIPQG--LPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-------------------------------SCCSS--CCTTCSEEECTTSCCCEECTGG
T ss_pred             cccccccccCccccccCCcc-------------------------------ccCcc--cCCccCEEECCCCcCCCCChhH
Confidence               12444455555444433                               33332  2456777777777777777777


Q ss_pred             cccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcC
Q 048194          426 IAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNAL  505 (558)
Q Consensus       426 l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  505 (558)
                      +..++.+++|++++|.+.+..+..+..               +++|++|+|++|.++. +|.+|..+++|++|++++|+|
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~---------------l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLAN---------------TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGG---------------STTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCC
T ss_pred             hhccccccccccccccccccccccccc---------------cccceeeecccccccc-cccccccccCCCEEECCCCcc
Confidence            777777778888777777655544432               6777777777777774 466777788888888888887


Q ss_pred             ccccccc------ccCCCCCCeecCCCCcCc--ccchhhhcCCCCCC
Q 048194          506 TGSIPSS------FGNLKRLESLDLSMNNLS--RAIPSQLASLYFLS  544 (558)
Q Consensus       506 ~~~~~~~------l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~  544 (558)
                      +......      ...+.+|+.|+|++|++.  ...|..|+-+....
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence            7432222      335567788888888764  23445555444333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4e-23  Score=198.33  Aligned_cols=244  Identities=23%  Similarity=0.327  Sum_probs=144.8

Q ss_pred             CCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCc
Q 048194          118 LTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLA  197 (558)
Q Consensus       118 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  197 (558)
                      ++.++-++.+++ .+|..+.  +++++|+|++|+++ .++...+.++++|++|++++|.+....|..+.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            445555555555 4455442  45666666666665 4433245666666666666666665556666667777777777


Q ss_pred             cccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccC-CCc
Q 048194          198 NNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDE-SSR  276 (558)
Q Consensus       198 ~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~  276 (558)
                      +|+++. +|.                     .....++.|++.+|.+. .++...+.....+..++...+...... ...
T Consensus        88 ~n~l~~-l~~---------------------~~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~  144 (305)
T d1xkua_          88 KNQLKE-LPE---------------------KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG  144 (305)
T ss_dssp             SSCCSB-CCS---------------------SCCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred             CCccCc-Ccc---------------------chhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCcc
Confidence            776663 332                     22345667777777666 455556666777777777776543221 122


Q ss_pred             ccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCE
Q 048194          277 NYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRF  356 (558)
Q Consensus       277 ~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~  356 (558)
                      .+..+++|+.+++.+|+++.+|. ..+++|+.|++++|...+..+..+..+..  ++.|++++|.+++.           
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--l~~L~~s~n~l~~~-----------  210 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNN--LAKLGLSFNSISAV-----------  210 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTTCTT--CCEEECCSSCCCEE-----------
T ss_pred             ccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCChhHhhcccc--cccccccccccccc-----------
Confidence            25667778888888888877765 23567888888888777666655544433  44444444444332           


Q ss_pred             EEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEE
Q 048194          357 IDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLN  436 (558)
Q Consensus       357 L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  436 (558)
                                                               .+.++..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus       211 -----------------------------------------~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         211 -----------------------------------------DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             -----------------------------------------CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             -----------------------------------------ccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence                                                     2233444555666666666665 4455566666666666


Q ss_pred             CCCCcCcc
Q 048194          437 LGNNQFSD  444 (558)
Q Consensus       437 l~~n~i~~  444 (558)
                      +++|+|+.
T Consensus       249 Ls~N~i~~  256 (305)
T d1xkua_         249 LHNNNISA  256 (305)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCccCc
Confidence            66666553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.8e-22  Score=189.21  Aligned_cols=139  Identities=29%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             CCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCc
Q 048194          401 TFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNN  480 (558)
Q Consensus       401 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  480 (558)
                      .+..+++|++|++++|.+....+..+..+++|+.+++++|.+++..+..+..               +++|++|++++|+
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~---------------~~~L~~L~l~~N~  164 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD---------------LGNLTHLFLHGNR  164 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------CTTCCEEECCSSC
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc---------------ccchhhcccccCc
Confidence            3444455555555555554444444444555555555555554333322221               4445555555555


Q ss_pred             ccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCe
Q 048194          481 FKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       481 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~  554 (558)
                      ++...+..|..+++|+.+++++|++++..|..|..+++|+.||+++|++.+..+..|..+++|++|++++|++.
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            55444455555555555555555555545555555555555555555555544555555555555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=191.86  Aligned_cols=222  Identities=21%  Similarity=0.170  Sum_probs=168.6

Q ss_pred             EcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccc
Q 048194           71 DLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFN  150 (558)
Q Consensus        71 ~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  150 (558)
                      +.++.+++ .+|.  .+  .+.+++|+|++|.++.. .+..|.++++|++|++++|.+....+..+..++.++.++...+
T Consensus        17 ~c~~~~L~-~iP~--~i--p~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          17 SCPQQGLQ-AVPV--GI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             ECCSSCCS-SCCT--TC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EcCCCCCC-ccCC--CC--CCCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            44555554 3343  22  25688999999998764 4567889999999999999988777777888888888877644


Q ss_pred             cccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCC
Q 048194          151 QFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLR  230 (558)
Q Consensus       151 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~  230 (558)
                      .....++...++++++|++|++++|.+....+..+...++|+.+++++|.+++..+..+                   ..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f-------------------~~  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-------------------RD  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------TT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh-------------------cc
Confidence            33335544468888889999999888876666677778888899999888886555554                   66


Q ss_pred             CCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCCCCCCCE
Q 048194          231 TQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQY  308 (558)
Q Consensus       231 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~~~~L~~  308 (558)
                      .++|++|++++|.++ .++...+.++++|+++++++|++.+..+.. |..+++|+.|++++|+++.++.  +..+++|++
T Consensus       152 ~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         152 LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccchhhcccccCccc-ccchhhhccccccchhhhhhccccccChhH-hhhhhhcccccccccccccccccccccccccCE
Confidence            778888888888887 566677888888888888888888766655 7778888888888888887765  777888888


Q ss_pred             EecCCCccccc
Q 048194          309 LYLSENQISRE  319 (558)
Q Consensus       309 L~l~~n~l~~~  319 (558)
                      |++++|++...
T Consensus       230 L~l~~N~l~C~  240 (284)
T d1ozna_         230 LRLNDNPWVCD  240 (284)
T ss_dssp             EECCSSCEECS
T ss_pred             EEecCCCCCCC
Confidence            88888877643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.3e-22  Score=185.10  Aligned_cols=200  Identities=25%  Similarity=0.169  Sum_probs=151.8

Q ss_pred             CCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccCEEE
Q 048194          280 FSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALRFID  358 (558)
Q Consensus       280 ~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~~L~  358 (558)
                      ....+.+++.++++++.+|. +.  +++++|++++|++++..+..+..++.  |++|++++|.++.++....+++|+.|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~--L~~L~L~~N~l~~l~~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTR--LTQLNLDRAELTKLQVDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTT--CCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccc--ccccccccccccccccccccccccccc
Confidence            34455667778888888876 42  57888888888887655566666555  888888888777665544466777777


Q ss_pred             cccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECC
Q 048194          359 LISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLG  438 (558)
Q Consensus       359 l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  438 (558)
                      +++|++.                               ..+..+..+++|+.|++++|.+.+..+..+..+++++.|+++
T Consensus        84 Ls~N~l~-------------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_          84 LSHNQLQ-------------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (266)
T ss_dssp             CCSSCCS-------------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             ccccccc-------------------------------ccccccccccccccccccccccceeecccccccccccccccc
Confidence            7666654                               345667777888888888888887777777888888888888


Q ss_pred             CCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCC
Q 048194          439 NNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKR  518 (558)
Q Consensus       439 ~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  518 (558)
                      +|.+.+..+..+..               ++.++.+++++|++++..+..|+.+++|++|+|++|+|+ .+|+++..+++
T Consensus       133 ~n~l~~l~~~~~~~---------------l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         133 GNELKTLPPGLLTP---------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             TSCCCCCCTTTTTT---------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             ccccceeccccccc---------------cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence            88887554444432               778888888888888877777888899999999999888 78888888888


Q ss_pred             CCeecCCCCcCc
Q 048194          519 LESLDLSMNNLS  530 (558)
Q Consensus       519 L~~L~L~~N~l~  530 (558)
                      |+.|+|++|++.
T Consensus       197 L~~L~L~~Np~~  208 (266)
T d1p9ag_         197 LPFAFLHGNPWL  208 (266)
T ss_dssp             CSEEECCSCCBC
T ss_pred             CCEEEecCCCCC
Confidence            999999988875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-21  Score=181.76  Aligned_cols=198  Identities=21%  Similarity=0.196  Sum_probs=135.5

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      ..+...+.+++.++.  +|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.++ .++.  ++.+++|++|
T Consensus        10 ~~~~~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L   82 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL   82 (266)
T ss_dssp             TTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred             CCCeEEEccCCCCCe--eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccc
Confidence            344445555555543  443332  35666666666666444455666666666666666665 4442  3556667777


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccCh
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL  250 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  250 (558)
                      ++++|+++ ..+..+..+++|++|++++|.+.+..+..+                   ..+.++++|++++|.+. .++.
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------------~~l~~l~~L~l~~n~l~-~l~~  141 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-------------------RGLGELQELYLKGNELK-TLPP  141 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-------------------TTCTTCCEEECTTSCCC-CCCT
T ss_pred             cccccccc-ccccccccccccccccccccccceeecccc-------------------ccccccccccccccccc-eecc
Confidence            77777666 345566677777777777777765544443                   56677777888777776 5566


Q ss_pred             hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC-CCCCCCCCEEecCCCccc
Q 048194          251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       251 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~~~~~~L~~L~l~~n~l~  317 (558)
                      ..+..+++++.+++++|++++..+.. +..+++|++|++++|+++.+|. +..+++|+.|++++|++.
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGL-LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccchhcccccccccccCccc-cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            66777888888888888887655544 7788888899999888888887 778888999999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=2.9e-19  Score=174.66  Aligned_cols=314  Identities=23%  Similarity=0.290  Sum_probs=186.1

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCC-CCccE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHL-LNLVC  169 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~  169 (558)
                      .++++|+|+++.++.  +|+.   .++|++|++++|.++ .+|..   ..+|++|++++|.++ .++     .+ +.|++
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~-----~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS-----DLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC-----SCCTTCCE
T ss_pred             cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh-----hhcccccc
Confidence            357778888777764  5643   457888888888887 66654   356788888888777 333     22 35888


Q ss_pred             EEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccC
Q 048194          170 AVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQ  249 (558)
Q Consensus       170 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  249 (558)
                      |++++|.+. .+|. ++.+++|++|+++++.+....                       .....+..+.+.++.....  
T Consensus       103 L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-----------------------~~~~~l~~l~~~~~~~~~~--  155 (353)
T d1jl5a_         103 LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-----------------------DLPPSLEFIAAGNNQLEEL--  155 (353)
T ss_dssp             EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-----------------------CCCTTCCEEECCSSCCSSC--
T ss_pred             ccccccccc-cccc-hhhhccceeeccccccccccc-----------------------cccccccchhhcccccccc--
Confidence            888888877 4553 567888888888888775332                       2234566677666554321  


Q ss_pred             hhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhcc
Q 048194          250 LDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSV  329 (558)
Q Consensus       250 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  329 (558)
                       ..+..++.++.+++.+|.......     .....+.+...++.+..++....++.++.+++++|... .++...     
T Consensus       156 -~~l~~l~~l~~L~l~~n~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~-----  223 (353)
T d1jl5a_         156 -PELQNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLP-----  223 (353)
T ss_dssp             -CCCTTCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSCC-----
T ss_pred             -ccccccccceeccccccccccccc-----cccccccccccccccccccccccccccccccccccccc-cccccc-----
Confidence             235667778888888877653221     22345566777777777777777888888888887764 333221     


Q ss_pred             ccceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCC
Q 048194          330 VGLHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQ  409 (558)
Q Consensus       330 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~  409 (558)
                      .++..+.+..+.+......  .+.+...++..+.+.+ +...+.                                 ...
T Consensus       224 ~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~-l~~l~~---------------------------------~~~  267 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG-LSELPP---------------------------------NLY  267 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE-ESCCCT---------------------------------TCC
T ss_pred             ccccccccccccccccccc--cccccccccccccccc-cccccc---------------------------------hhc
Confidence            1255555655555432221  2333444443333221 111111                                 234


Q ss_pred             EEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhh
Q 048194          410 TLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDV  489 (558)
Q Consensus       410 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  489 (558)
                      ..++..+.+.+.    ...+++|++|++++|.++ .+|..                  +++|+.|++++|+++. +|.  
T Consensus       268 ~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~------------------~~~L~~L~L~~N~L~~-l~~--  321 (353)
T d1jl5a_         268 YLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL------------------PPRLERLIASFNHLAE-VPE--  321 (353)
T ss_dssp             EEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC------------------CTTCCEEECCSSCCSC-CCC--
T ss_pred             ccccccCccccc----cccCCCCCEEECCCCccC-ccccc------------------cCCCCEEECCCCcCCc-ccc--
Confidence            455555554421    123456666777666665 33422                  4567777777777663 332  


Q ss_pred             cccCCCCeeeCcCCcCcccccccccCCCCCCeecCC
Q 048194          490 GLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLS  525 (558)
Q Consensus       490 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  525 (558)
                       .+++|++|++++|+++ .+|..   ...|+.|.+.
T Consensus       322 -~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         322 -LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             -CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             -ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence             2457888888888877 56643   2356666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=3.2e-19  Score=174.37  Aligned_cols=314  Identities=22%  Similarity=0.309  Sum_probs=188.9

Q ss_pred             CCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEe
Q 048194          116 SSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQ  195 (558)
Q Consensus       116 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  195 (558)
                      .++++|+|++++++ .+|+.   .++|++|++++|+++ .+|.    ...+|++|++++|.++ .++. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLK-ALSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-CCCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccc-hhhh-h--cccccccc
Confidence            36888999998887 67753   467888888888888 5553    2456777777777765 2332 1  13477777


Q ss_pred             CccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCCC
Q 048194          196 LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDESS  275 (558)
Q Consensus       196 l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  275 (558)
                      +++|.+. .+|..                    ..+++|+.|+++++.+.+. +    .....+..+.+..+        
T Consensus       105 L~~n~l~-~lp~~--------------------~~l~~L~~L~l~~~~~~~~-~----~~~~~l~~l~~~~~--------  150 (353)
T d1jl5a_         105 VSNNQLE-KLPEL--------------------QNSSFLKIIDVDNNSLKKL-P----DLPPSLEFIAAGNN--------  150 (353)
T ss_dssp             CCSSCCS-SCCCC--------------------TTCTTCCEEECCSSCCSCC-C----CCCTTCCEEECCSS--------
T ss_pred             ccccccc-cccch--------------------hhhccceeecccccccccc-c----cccccccchhhccc--------
Confidence            7777665 33332                    4556666666666655421 1    12234444444443        


Q ss_pred             cccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccccCChhHHhhccccceEEEcCCccccccCCCCCCCccC
Q 048194          276 RNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNFLVGFQAPYSIPALR  355 (558)
Q Consensus       276 ~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~L~  355 (558)
                                       .......+..++.++.+++++|.... .+...   .  ..+.+...++.+........++.++
T Consensus       151 -----------------~~~~~~~l~~l~~l~~L~l~~n~~~~-~~~~~---~--~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         151 -----------------QLEELPELQNLPFLTAIYADNNSLKK-LPDLP---L--SLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             -----------------CCSSCCCCTTCTTCCEEECCSSCCSS-CCCCC---T--TCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             -----------------cccccccccccccceecccccccccc-ccccc---c--ccccccccccccccccccccccccc
Confidence                             33333334444555555555554431 11110   0  1334444444444444334467777


Q ss_pred             EEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccC-CCCCE
Q 048194          356 FIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKC-KMLEV  434 (558)
Q Consensus       356 ~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~  434 (558)
                      .+++++|... .++....++..+.+.++.+.          ..+..   ...+...++..+.+.+.     ..+ .....
T Consensus       208 ~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~----------~~~~~---~~~l~~~~~~~~~~~~l-----~~l~~~~~~  268 (353)
T d1jl5a_         208 TIYADNNLLK-TLPDLPPSLEALNVRDNYLT----------DLPEL---PQSLTFLDVSENIFSGL-----SELPPNLYY  268 (353)
T ss_dssp             EEECCSSCCS-SCCSCCTTCCEEECCSSCCS----------CCCCC---CTTCCEEECCSSCCSEE-----SCCCTTCCE
T ss_pred             cccccccccc-cccccccccccccccccccc----------ccccc---ccccccccccccccccc-----ccccchhcc
Confidence            7777776654 34555666777777777665          22222   23466777777666531     222 34556


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      .++..+.+.+. +                  ..+++|++|++++|+++. +|.   .+++|+.|++++|+|+ .+|+.  
T Consensus       269 ~~~~~~~~~~~-~------------------~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~--  322 (353)
T d1jl5a_         269 LNASSNEIRSL-C------------------DLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL--  322 (353)
T ss_dssp             EECCSSCCSEE-C------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC--
T ss_pred             cccccCccccc-c------------------ccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc--
Confidence            67777766532 1                  126789999999999984 443   3688999999999998 67753  


Q ss_pred             CCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCc
Q 048194          515 NLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLS  549 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  549 (558)
                       +++|+.|++++|+++ .+|+..   .+|+.|.+.
T Consensus       323 -~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         323 -PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             -CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             -cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence             568999999999987 566533   357777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-22  Score=203.96  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             CCCCEEECcCCcCCccCCc----ccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          406 CLLQTLDLNGNRPQGTVPK----SIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       406 ~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      ..|+.+++++|.++.....    .+...++|++|+|++|.+++.....+.          .......+.|++|+|++|++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~----------~~l~~~~~~L~~L~Ls~n~i  381 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC----------QGLGQPGSVLRVLWLADCDV  381 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH----------HHHTSTTCCCCEEECTTSCC
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhh----------hhhhcccCCCCEEECCCCCC
Confidence            3466666666665543222    223445666666666665432111110          00001134466666666665


Q ss_pred             ccc----CchhhcccCCCCeeeCcCCcCcccccccc----c-CCCCCCeecCCCCcCcccc
Q 048194          482 KGP----ILEDVGLLKSLYGLNLSHNALTGSIPSSF----G-NLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       482 ~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~L~~N~l~~~~  533 (558)
                      +..    +...+..+++|++|+|++|+|++.....+    . +...|+.|++++|.+....
T Consensus       382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            532    22234445666666666666553322222    1 2234666666666555433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=4.9e-18  Score=154.72  Aligned_cols=189  Identities=19%  Similarity=0.224  Sum_probs=105.7

Q ss_pred             ccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCC
Q 048194           87 LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLN  166 (558)
Q Consensus        87 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  166 (558)
                      ...+.+|+.|++.+|.+.+  + ..+..+++|++|++++|.+++..  .+..+++|+++++++|.++ .++  .+.++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~--~l~~l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS--AIAGLQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred             HHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc--ccccccc
Confidence            3455666666666666654  3 23566666666666666665322  2566666666666666665 343  2456666


Q ss_pred             ccEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCc
Q 048194          167 LVCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNG  246 (558)
Q Consensus       167 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~  246 (558)
                      |++++++++...+.  ..+...+.++.+.++++.+....+  +                   ...++|++|++++|.+.+
T Consensus       109 L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~-------------------~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2         109 IKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L-------------------AGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             CCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G-------------------GGCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccc--chhccccchhhhhchhhhhchhhh--h-------------------cccccccccccccccccc
Confidence            66666666655422  234455666666666655543221  1                   444556666666665542


Q ss_pred             ccChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecC
Q 048194          247 TVQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS  312 (558)
Q Consensus       247 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~  312 (558)
                      .   ..+.++++|++|++++|++++..+   +..+++|++|++++|++++++.+..+++|++|+++
T Consensus       166 ~---~~l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 L---TPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             C---GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             c---hhhcccccceecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            2   124556666666666665553221   44555666666666666655555566666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-20  Score=188.94  Aligned_cols=190  Identities=19%  Similarity=0.126  Sum_probs=126.2

Q ss_pred             CCccCEEEcccccCcc--------cCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccC
Q 048194          351 IPALRFIDLISNQLRG--------NIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTV  422 (558)
Q Consensus       351 ~~~L~~L~l~~n~~~~--------~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~  422 (558)
                      .+.++.+++.+|.+..        ........++.+++++|.+.....     +.....+...+.++.+++++|.+++..
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~-----~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-----GDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----HHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             cccccccchhhccccccccchhhccccccccccccccccccccccccc-----ccccccccccccccccccccccccccc
Confidence            5666677777765531        222334567777777776652210     112223345677999999999987533


Q ss_pred             Cccc-----ccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc----hhhc-cc
Q 048194          423 PKSI-----AKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL----EDVG-LL  492 (558)
Q Consensus       423 ~~~l-----~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~-~l  492 (558)
                      ...+     .....|+.+++++|.++......+           .......++|++|+|++|.+++...    ..+. ..
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l-----------~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~  368 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-----------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG  368 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-----------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             cchhhccccccccccccccccccchhhhhhhhc-----------ccccccccchhhhheeeecccCcccchhhhhhhccc
Confidence            3222     234689999999998764322211           1223446789999999999875432    2332 45


Q ss_pred             CCCCeeeCcCCcCccc----ccccccCCCCCCeecCCCCcCcccchhh----hc-CCCCCCEEeCcCCcCeee
Q 048194          493 KSLYGLNLSHNALTGS----IPSSFGNLKRLESLDLSMNNLSRAIPSQ----LA-SLYFLSYLNLSYNQLEGR  556 (558)
Q Consensus       493 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~  556 (558)
                      +.|++|+|++|.|++.    +++.+..+++|++|||++|+++......    +. +-..|++|++.+|++.+.
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            7799999999999853    4556778899999999999998654433    33 334799999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-17  Score=152.43  Aligned_cols=191  Identities=20%  Similarity=0.273  Sum_probs=136.4

Q ss_pred             CCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEE
Q 048194           91 HYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCA  170 (558)
Q Consensus        91 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  170 (558)
                      .++..++++.+.+.+.   ..++.+.+|++|++.+|.++ .++ .+.++++|++|++++|.++ .++  .+..+++++++
T Consensus        19 ~~~~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~-~~~--~l~~l~~l~~l   90 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLA--PLKNLTKITEL   90 (227)
T ss_dssp             HHHHHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCG--GGTTCCSCCEE
T ss_pred             HHHHHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceee-ccc--ccccccccccc
Confidence            3344566777777764   24567788999999999998 454 5889999999999999988 343  27888899999


Q ss_pred             EccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccCh
Q 048194          171 VLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQL  250 (558)
Q Consensus       171 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  250 (558)
                      ++++|.++ .+ ..+..+++|++++++++...+..+  +                   ...+.++.+.++.+.+...   
T Consensus        91 ~~~~n~~~-~i-~~l~~l~~L~~l~l~~~~~~~~~~--~-------------------~~~~~~~~l~~~~~~~~~~---  144 (227)
T d1h6ua2          91 ELSGNPLK-NV-SAIAGLQSIKTLDLTSTQITDVTP--L-------------------AGLSNLQVLYLDLNQITNI---  144 (227)
T ss_dssp             ECCSCCCS-CC-GGGTTCTTCCEEECTTSCCCCCGG--G-------------------TTCTTCCEEECCSSCCCCC---
T ss_pred             cccccccc-cc-ccccccccccccccccccccccch--h-------------------ccccchhhhhchhhhhchh---
Confidence            99988876 33 357788889999998887664322  1                   5567778888877776532   


Q ss_pred             hhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecCCCcccc
Q 048194          251 DKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR  318 (558)
Q Consensus       251 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~~n~l~~  318 (558)
                      ..+..+++|++|++++|.+....+   +..+++|+.|++++|++++++.+..+++|++|++++|++++
T Consensus       145 ~~~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         145 SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred             hhhccccccccccccccccccchh---hcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence            235667777888887777654322   55667777777777777776666666777777777776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9e-17  Score=144.05  Aligned_cols=162  Identities=24%  Similarity=0.262  Sum_probs=119.2

Q ss_pred             ceEEEcCCccccccCCCCCCCccCEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEE
Q 048194          332 LHCLNLSHNFLVGFQAPYSIPALRFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTL  411 (558)
Q Consensus       332 L~~L~ls~n~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L  411 (558)
                      +++|++++|.++.......+++|++|++++|+++                               .++ .++.+++|++|
T Consensus        48 L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~-------------------------------~l~-~~~~l~~L~~L   95 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-------------------------------DIK-PLANLKNLGWL   95 (210)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-------------------------------CCG-GGTTCTTCCEE
T ss_pred             ccEEECcCCCCCCchhHhhCCCCCEEeCCCcccc-------------------------------Ccc-ccccCcccccc
Confidence            6666666666665544333566666666655554                               233 24667788999


Q ss_pred             ECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcc
Q 048194          412 DLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGL  491 (558)
Q Consensus       412 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  491 (558)
                      ++++|++++ ++ .+..+++|+.|++++|.+...                 .....++.++.+++++|.+++  +..+..
T Consensus        96 ~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~-----------------~~l~~l~~l~~l~~~~n~l~~--~~~~~~  154 (210)
T d1h6ta2          96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-----------------NGLVHLPQLESLYLGNNKITD--ITVLSR  154 (210)
T ss_dssp             ECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-----------------GGGGGCTTCCEEECCSSCCCC--CGGGGG
T ss_pred             ccccccccc-cc-ccccccccccccccccccccc-----------------ccccccccccccccccccccc--cccccc
Confidence            999888874 44 577888999999998876531                 122347888999999998875  345778


Q ss_pred             cCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcC
Q 048194          492 LKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSY  550 (558)
Q Consensus       492 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  550 (558)
                      +++|+++++++|++++ ++ .+.++++|++|++++|+++. ++ .+.++++|++|+|++
T Consensus       155 l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         155 LTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9999999999999985 43 38899999999999999974 55 589999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.1e-17  Score=145.69  Aligned_cols=164  Identities=20%  Similarity=0.266  Sum_probs=85.8

Q ss_pred             CCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEE
Q 048194          115 ISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQL  194 (558)
Q Consensus       115 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  194 (558)
                      +.+|++|++++|.+++ ++ .+..+++|++|++++|+++ .++.  ++.+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcccc-Cccc--cccCccccccccccccccc-cc-ccccccccccc
Confidence            3455555555555542 22 2445555555555555555 2321  3455555555555555542 22 34555555566


Q ss_pred             eCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccCC
Q 048194          195 QLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDES  274 (558)
Q Consensus       195 ~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  274 (558)
                      ++++|.+.. ++. +                   ..+++++.+++++|.+++.   ..+..+++|+++++++|++++..+
T Consensus       118 ~l~~~~~~~-~~~-l-------------------~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l~~i~~  173 (210)
T d1h6ta2         118 SLEHNGISD-ING-L-------------------VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP  173 (210)
T ss_dssp             ECTTSCCCC-CGG-G-------------------GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccccc-ccc-c-------------------ccccccccccccccccccc---cccccccccccccccccccccccc
Confidence            555555432 111 1                   4445555555555555421   124455566666666666553221


Q ss_pred             CcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEEecC
Q 048194          275 SRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS  312 (558)
Q Consensus       275 ~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L~l~  312 (558)
                         +..+++|++|++++|++++++.+..+++|++|+++
T Consensus       174 ---l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 ---LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             ---GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             ---ccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence               45566666666666666666556666666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=142.28  Aligned_cols=162  Identities=26%  Similarity=0.369  Sum_probs=80.7

Q ss_pred             CCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCE
Q 048194          114 NISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQ  193 (558)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  193 (558)
                      .++++++|++++|.++ .++ .+..+++|++|++++|+++ .++.  ++++++|++|++++|.+.. ++ .+..+++|++
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccc-cc-cccccccccc
Confidence            3455555555555554 222 3445555555555555555 2221  4555555555555555442 22 2455555555


Q ss_pred             EeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCCCCCEEEccCCcccccC
Q 048194          194 LQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLGNLAKLDLSYNSLAVDE  273 (558)
Q Consensus       194 L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  273 (558)
                      |++++|......+  +                   ..+++|+.|++++|.+. .++  .+..+++|++|++.+|++++..
T Consensus       111 L~l~~~~~~~~~~--~-------------------~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         111 LTLFNNQITDIDP--L-------------------KNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             EECCSSCCCCCGG--G-------------------TTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccc--c-------------------chhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCCc
Confidence            5555555442211  1                   44455555555555544 221  3445555555555555554322


Q ss_pred             CCcccCCCCCCCEEecCCCCCCCCCCCCCCCCCCEE
Q 048194          274 SSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL  309 (558)
Q Consensus       274 ~~~~~~~~~~L~~L~l~~n~l~~l~~~~~~~~L~~L  309 (558)
                      +   +..+++|++|++++|++++++.+..+++|++|
T Consensus       167 ~---l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         167 P---LANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             G---GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             c---ccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            1   44555555566655555555555555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.9e-17  Score=149.15  Aligned_cols=180  Identities=18%  Similarity=0.148  Sum_probs=84.6

Q ss_pred             CCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccC-CccCccCCccccCCCCCCEEe
Q 048194          117 SLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSD-NSLDGSIPRSMFEFPMLQQLQ  195 (558)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~  195 (558)
                      ++++|++++|.++...+..|.++++|++|++++|.+...++...+.+++.++++.+.. +.+....+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3445555555544222233445555555555555544333332345555555554432 334434444455555566666


Q ss_pred             CccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcccChhhhcCCC-CCCEEEccCCcccccCC
Q 048194          196 LANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGTVQLDKILSLG-NLAKLDLSYNSLAVDES  274 (558)
Q Consensus       196 l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~  274 (558)
                      +++|.+....+...              +    ..++.++.+...++.+. .++...+..++ .++.|++++|+++....
T Consensus       110 l~~~~l~~~~~~~~--------------~----~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1         110 ISNTGIKHLPDVHK--------------I----HSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             EESCCCCSCCCCTT--------------T----CBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             cchhhhcccccccc--------------c----ccccccccccccccccc-cccccccccccccceeeeccccccccccc
Confidence            65555542221110              0    22333333333444443 33333333332 45566666666653332


Q ss_pred             CcccCCCCCCCE-EecCCCCCCCCCC--CCCCCCCCEEecCCCccc
Q 048194          275 SRNYSFSPMLEL-LNLASCKLREIPN--LKNQSQLQYLYLSENQIS  317 (558)
Q Consensus       275 ~~~~~~~~~L~~-L~l~~n~l~~l~~--~~~~~~L~~L~l~~n~l~  317 (558)
                      .. +. .+++.+ +.+.+|+++++|.  +..+++|++|++++|+++
T Consensus       171 ~~-~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         171 CA-FN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             TT-TT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cc-cc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            22 22 233333 3445556666665  566666666666666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4e-16  Score=138.53  Aligned_cols=163  Identities=23%  Similarity=0.308  Sum_probs=100.6

Q ss_pred             cCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCc
Q 048194           88 FSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNL  167 (558)
Q Consensus        88 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  167 (558)
                      ..+.++++|+++++.+...   +.+..+++|++|++++|.+++ ++. ++++++|++|++++|.+. .++  .+++++.|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT--PLANLTNL  108 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG--GGTTCTTC
T ss_pred             HHhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc--cccccccc
Confidence            3456667777777666553   245666777777777777663 232 666777777777777665 343  25667777


Q ss_pred             cEEEccCCccCccCCccccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhcccCCCCCCCEEEcccccCCcc
Q 048194          168 VCAVLSDNSLDGSIPRSMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSCLGLRTQKLTPLLLSSNNLNGT  247 (558)
Q Consensus       168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~L~~L~l~~n~l~~~  247 (558)
                      ++|+++++....  ...+..+++|+.|++++|.+.. ++. +                   ..++++++|++.+|++++ 
T Consensus       109 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~-l-------------------~~~~~L~~L~l~~n~l~~-  164 (199)
T d2omxa2         109 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-ISA-L-------------------SGLTSLQQLNFSSNQVTD-  164 (199)
T ss_dssp             SEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CGG-G-------------------TTCTTCSEEECCSSCCCC-
T ss_pred             cccccccccccc--ccccchhhhhHHhhhhhhhhcc-ccc-c-------------------cccccccccccccccccC-
Confidence            777777666653  2335667777777777776652 222 2                   566677777777777663 


Q ss_pred             cChhhhcCCCCCCEEEccCCcccccCCCcccCCCCCCCEE
Q 048194          248 VQLDKILSLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL  287 (558)
Q Consensus       248 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  287 (558)
                      ++  .+.++++|++|++++|++++..  . ++.+++|+.|
T Consensus       165 l~--~l~~l~~L~~L~ls~N~i~~i~--~-l~~L~~L~~L  199 (199)
T d2omxa2         165 LK--PLANLTTLERLDISSNKVSDIS--V-LAKLTNLESL  199 (199)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEE
T ss_pred             Cc--cccCCCCCCEEECCCCCCCCCc--c-ccCCCCCCcC
Confidence            32  3667777777777777766432  1 4556666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.9e-17  Score=143.63  Aligned_cols=173  Identities=17%  Similarity=0.228  Sum_probs=121.4

Q ss_pred             CEEEcccccCcccCCCCCCCCcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCE
Q 048194          355 RFIDLISNQLRGNIHQLPNNPIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEV  434 (558)
Q Consensus       355 ~~L~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  434 (558)
                      +.++.++++++......+.++++|++++|.+++.        ..+..|..+++|++|++++|.+....+..+..+++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~--------~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI--------SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSB--------CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCccc--------ccccccCCCceEeeeeccccccccccccccccccccce
Confidence            4566666666643334556777777777777632        12345677788888888888888777788888888888


Q ss_pred             EECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCccccccccc
Q 048194          435 LNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFG  514 (558)
Q Consensus       435 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  514 (558)
                      |++++|+++...|..+..               +++|++|+|++|.+++..+..|..+++|++|+|++|.+.......+ 
T Consensus        83 L~Ls~N~l~~l~~~~F~~---------------l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-  146 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLG---------------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-  146 (192)
T ss_dssp             EECCSCCCCEECSSSSTT---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-
T ss_pred             eeeccccccccCHHHHhC---------------CCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-
Confidence            888888888666655543               7888888888888888777788888888888888888874332211 


Q ss_pred             CCCCCCeecCCCCcCcccchhhhcCCCCCCEEeCcCCcCe
Q 048194          515 NLKRLESLDLSMNNLSRAIPSQLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       515 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~l~  554 (558)
                      -...++.+.+..+.++...|..+   ..++.++|+.|+++
T Consensus       147 ~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         147 FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            11245666777777776666544   44566778877764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-16  Score=144.78  Aligned_cols=215  Identities=13%  Similarity=0.109  Sum_probs=149.2

Q ss_pred             EEcCCCCccccccCcccccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCC-ChhccCCCCCcEEecc
Q 048194           70 LDLSTESISGGIENAAILFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQI-PVQISRMARLVALDFS  148 (558)
Q Consensus        70 L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~  148 (558)
                      ++.++.+++ .+|.  .+  .+++++|++++|.+... .+..|.++++|++|++++|.+...+ +..|.+++.++++++.
T Consensus        13 i~c~~~~l~-~iP~--~l--~~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          13 FLCQESKVT-EIPS--DL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EEEESCSCS-SCCS--CS--CSCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             EEEeCCCCC-CcCC--CC--CCCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            444455555 3444  22  25899999999998764 4457899999999999999887554 4468889999999887


Q ss_pred             c-ccccccccchhhcCCCCccEEEccCCccCccCCc-cccCCCCCCEEeCccccCCCCCCccccccccchhhhhchhhhc
Q 048194          149 F-NQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPR-SMFEFPMLQQLQLANNQFGGSIPRFSNASSSALDTQIKRVYSC  226 (558)
Q Consensus       149 ~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~li~~~~~~  226 (558)
                      . |.+. ..+...+.++++|++++++++.+....+. .+..+..++.+...++.+....+..+                 
T Consensus        87 ~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~-----------------  148 (242)
T d1xwdc1          87 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF-----------------  148 (242)
T ss_dssp             CCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS-----------------
T ss_pred             cccccc-ccccccccccccccccccchhhhccccccccccccccccccccccccccccccccc-----------------
Confidence            5 5565 44333688999999999999988743222 23345566666666666654333332                 


Q ss_pred             ccCCC-CCCCEEEcccccCCcccChhhhcCCCCCCEE-EccCCcccccCCCcccCCCCCCCEEecCCCCCCCCCC--CCC
Q 048194          227 LGLRT-QKLTPLLLSSNNLNGTVQLDKILSLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKN  302 (558)
Q Consensus       227 ~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~~~  302 (558)
                        ..+ ..++.|++++|+++ .++...+ ...+++++ .+.+|.++.. +...|..+++|+.|++++|+++.+|.  +.+
T Consensus       149 --~~~~~~l~~L~l~~n~l~-~i~~~~~-~~~~l~~~~~l~~n~l~~l-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         149 --VGLSFESVILWLNKNGIQ-EIHNCAF-NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             --TTSBSSCEEEECCSSCCC-EECTTTT-TTCCEEEEECTTCTTCCCC-CTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             --ccccccceeeeccccccc-ccccccc-cchhhhccccccccccccc-cHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence              333 47888999999987 6665544 34555555 5677777744 44448889999999999999999987  667


Q ss_pred             CCCCCEEecCC
Q 048194          303 QSQLQYLYLSE  313 (558)
Q Consensus       303 ~~~L~~L~l~~  313 (558)
                      +++|+++++.+
T Consensus       224 l~~L~~l~~~~  234 (242)
T d1xwdc1         224 LKKLRARSTYN  234 (242)
T ss_dssp             CCEEESSSEES
T ss_pred             CcccccCcCCC
Confidence            66666666544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.3e-16  Score=140.91  Aligned_cols=152  Identities=22%  Similarity=0.228  Sum_probs=119.0

Q ss_pred             CcEEEccCCcccccCCCCCccCCCCCCCCCCCCCCEEECcCCcCCcc-CCcccccCCCCCEEECCCCcCcccCCccccCc
Q 048194          375 PIYIDFSNNNFTSSIPADTVNGTLPDTFPRNCLLQTLDLNGNRPQGT-VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDA  453 (558)
Q Consensus       375 l~~l~l~~n~~~~~~~~~~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~  453 (558)
                      .+.++.++++++          .+|..+.  +++++|+|++|++++. .+..|..+++|+.|++++|.+.+..+..+.. 
T Consensus        10 ~~~v~Cs~~~L~----------~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-   76 (192)
T d1w8aa_          10 GTTVDCTGRGLK----------EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-   76 (192)
T ss_dssp             TTEEECTTSCCS----------SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-
T ss_pred             CCEEEEeCCCcC----------ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-
Confidence            467889999888          6666553  5799999999999764 4567788999999999999998777666644 


Q ss_pred             eeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccc
Q 048194          454 PITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAI  533 (558)
Q Consensus       454 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  533 (558)
                                    +++|++|+|++|+++...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+....
T Consensus        77 --------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          77 --------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             --------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             --------------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence                          888999999999999888888999999999999999999777778889999999999999887433


Q ss_pred             h-hhhcCCCCCCEEeCcCCcCee
Q 048194          534 P-SQLASLYFLSYLNLSYNQLEG  555 (558)
Q Consensus       534 ~-~~~~~l~~L~~L~l~~n~l~~  555 (558)
                      . .++.  ..++.+.+..+.++.
T Consensus       143 ~~~~~~--~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_         143 HLAWFA--EWLRKKSLNGGAARC  163 (192)
T ss_dssp             GGHHHH--HHHHHHCCSGGGCBB
T ss_pred             chHHHh--hhhhhhcccCCCeEe
Confidence            2 2221  234455555565543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-16  Score=148.46  Aligned_cols=84  Identities=18%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             CCCCCEEeCcCCcCccC-CChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCC-ccCcc-CCccccCCCCC
Q 048194          115 ISSLTYLNLSDAGFAGQ-IPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDN-SLDGS-IPRSMFEFPML  191 (558)
Q Consensus       115 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L  191 (558)
                      ..+|++|+++++.++.. ++..+.++++|++|+++++.+++.... .+..+++|++|++++| .+++. +......+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34566666666555432 233345556666666666655533322 3455556666666554 23211 11112245556


Q ss_pred             CEEeCccc
Q 048194          192 QQLQLANN  199 (558)
Q Consensus       192 ~~L~l~~n  199 (558)
                      ++|++++|
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            66666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.8e-16  Score=146.18  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=17.3

Q ss_pred             CCCCEEECcCC-cCCccCCcccccCCCCCEEECCCC
Q 048194          406 CLLQTLDLNGN-RPQGTVPKSIAKCKMLEVLNLGNN  440 (558)
Q Consensus       406 ~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n  440 (558)
                      ++|++|++++| .+++.....+..+++|++|++++|
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            34555555543 234444444555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=121.53  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=98.6

Q ss_pred             CCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcc
Q 048194          402 FPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNF  481 (558)
Q Consensus       402 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  481 (558)
                      +.++..+++|++++|+++ .++..+..+++|+.|++++|.++.. + .+               ..+++|++|++++|.+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~---------------~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GF---------------PLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CC---------------CCCSSCCEEECCSSCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-Cc---------------ccCcchhhhhcccccc
Confidence            445667888999999988 4566667788899999999988743 2 12               2378899999999998


Q ss_pred             cccCchhhcccCCCCeeeCcCCcCccccc-ccccCCCCCCeecCCCCcCcccc---hhhhcCCCCCCEEeC
Q 048194          482 KGPILEDVGLLKSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAI---PSQLASLYFLSYLNL  548 (558)
Q Consensus       482 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l  548 (558)
                      +...+..+..+++|+.|++++|+++.... ..+..+++|+.|++++|+++...   +..+..+++|++||-
T Consensus        76 ~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            87666667789999999999999874322 46788899999999999887432   235777889998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.1e-13  Score=111.63  Aligned_cols=102  Identities=25%  Similarity=0.322  Sum_probs=68.2

Q ss_pred             CEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEcc
Q 048194           94 RSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLS  173 (558)
Q Consensus        94 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  173 (558)
                      |+|++++|.++.  ++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .++  .+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEECC
Confidence            466777777764  33 3666777777777777776 56666777777777777777776 444  36677777777777


Q ss_pred             CCccCccC-CccccCCCCCCEEeCccccCC
Q 048194          174 DNSLDGSI-PRSMFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       174 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~  202 (558)
                      +|.+.... ...+..+++|++|++++|+++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            77776332 245667777777777777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-14  Score=119.96  Aligned_cols=111  Identities=19%  Similarity=0.142  Sum_probs=56.2

Q ss_pred             ccCCCCCCEEECCCCCCCCCccchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCC
Q 048194           87 LFSLHYLRSLNLARTSFNGTQISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLN  166 (558)
Q Consensus        87 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  166 (558)
                      +.....+++|+|++|.++.  ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .++...+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccc
Confidence            3444555666666666554  3344455556666666666555 232 3555556666666666555 332212344555


Q ss_pred             ccEEEccCCccCccC-CccccCCCCCCEEeCccccCC
Q 048194          167 LVCAVLSDNSLDGSI-PRSMFEFPMLQQLQLANNQFG  202 (558)
Q Consensus       167 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~  202 (558)
                      |++|++++|.+.... ...+..+++|++|++++|.++
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc
Confidence            555555555554211 123444555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2e-13  Score=110.04  Aligned_cols=78  Identities=24%  Similarity=0.394  Sum_probs=50.6

Q ss_pred             CEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccCCCCCCEEeCcc
Q 048194          119 TYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFEFPMLQQLQLAN  198 (558)
Q Consensus       119 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  198 (558)
                      |+|++++|.++ .++ .+.++++|++|++++|+++ .+|. .++.+++|++|++++|.+++ +| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchh-hhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            46777777776 444 3667777777777777776 4543 35666777777777776663 33 366666666776666


Q ss_pred             ccCC
Q 048194          199 NQFG  202 (558)
Q Consensus       199 n~~~  202 (558)
                      |++.
T Consensus        75 N~i~   78 (124)
T d1dcea3          75 NRLQ   78 (124)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            6665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.9e-14  Score=138.16  Aligned_cols=139  Identities=16%  Similarity=0.166  Sum_probs=71.5

Q ss_pred             CCCEEECcCCcCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCccc
Q 048194          407 LLQTLDLNGNRPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFK  482 (558)
Q Consensus       407 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  482 (558)
                      .|+.+++++|.+...    +...+..++.|+.|++++|.+.......          .........++|+.|++++|.++
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~----------~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH----------LLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH----------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred             ccceeecccccccccccccccchhhhhhhhccccccccccccccccc----------chhhhhcchhhhccccccccccc
Confidence            355566665555432    2233445566666666666654211000          00111233556666666666654


Q ss_pred             cc----CchhhcccCCCCeeeCcCCcCcccccccc----c--CCCCCCeecCCCCcCcccc----hhhhc-CCCCCCEEe
Q 048194          483 GP----ILEDVGLLKSLYGLNLSHNALTGSIPSSF----G--NLKRLESLDLSMNNLSRAI----PSQLA-SLYFLSYLN  547 (558)
Q Consensus       483 ~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~--~l~~L~~L~L~~N~l~~~~----~~~~~-~l~~L~~L~  547 (558)
                      ..    +...+..+++|++|++++|.+++.....+    .  ..+.|++|++++|+++...    ...+. +.++|++|+
T Consensus       229 ~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence            32    22344566677777777776654322222    2  2355777777777765432    23232 355677777


Q ss_pred             CcCCcCee
Q 048194          548 LSYNQLEG  555 (558)
Q Consensus       548 l~~n~l~~  555 (558)
                      +++|++.+
T Consensus       309 l~~N~~~~  316 (344)
T d2ca6a1         309 LNGNRFSE  316 (344)
T ss_dssp             CTTSBSCT
T ss_pred             CCCCcCCC
Confidence            77777643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=2.2e-14  Score=138.99  Aligned_cols=92  Identities=16%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             cccCCCCCCEEECCCCCCCCCc---cchhhcCCCCCCEEeCcCCcCccC----------CChhccCCCCCcEEecccccc
Q 048194           86 ILFSLHYLRSLNLARTSFNGTQ---ISSKLANISSLTYLNLSDAGFAGQ----------IPVQISRMARLVALDFSFNQF  152 (558)
Q Consensus        86 ~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~L~~n~~  152 (558)
                      .+.....|+.|+|++|.+....   +...+...++|+.++++++.....          +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            3445566666666666554431   223345556666666665543211          112234456666666666665


Q ss_pred             cccc-cc--hhhcCCCCccEEEccCCcc
Q 048194          153 SGSI-SS--IRWEHLLNLVCAVLSDNSL  177 (558)
Q Consensus       153 ~~~~-~~--~~~~~l~~L~~L~L~~n~l  177 (558)
                      .... ..  ..+..+++|++|++++|.+
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccchhhhhcccccchheecccccc
Confidence            5321 11  0234455666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=5.1e-14  Score=124.04  Aligned_cols=136  Identities=21%  Similarity=0.203  Sum_probs=104.6

Q ss_pred             CCCCCCCCCCCCCEEECcCCcCCccCCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEEC
Q 048194          397 TLPDTFPRNCLLQTLDLNGNRPQGTVPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDF  476 (558)
Q Consensus       397 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  476 (558)
                      .++..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.++. +|...               ..++.|+.|++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~---------------~~~~~L~~L~l  100 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLD---------------AVADTLEELWI  100 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHH---------------HHHHHCCEEEC
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccc---------------ccccccccccc
Confidence            345567778899999999999984 44 58899999999999999863 33211               23578999999


Q ss_pred             CCCcccccCchhhcccCCCCeeeCcCCcCccccc-ccccCCCCCCeecCCCCcCcccchh----------hhcCCCCCCE
Q 048194          477 STNNFKGPILEDVGLLKSLYGLNLSHNALTGSIP-SSFGNLKRLESLDLSMNNLSRAIPS----------QLASLYFLSY  545 (558)
Q Consensus       477 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~  545 (558)
                      ++|.++..  ..+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+.          .+..+++|+.
T Consensus       101 ~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         101 SYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             SEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             cccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence            99999853  568889999999999999984322 4688999999999999988654332          2567899999


Q ss_pred             EeCcCCcCe
Q 048194          546 LNLSYNQLE  554 (558)
Q Consensus       546 L~l~~n~l~  554 (558)
                      ||  +.+++
T Consensus       179 LD--~~~I~  185 (198)
T d1m9la_         179 LD--GMPVD  185 (198)
T ss_dssp             ES--SGGGT
T ss_pred             eC--CccCC
Confidence            87  44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.8e-13  Score=120.40  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             cchhhcCCCCCCEEeCcCCcCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEEccCCccCccCCccccC
Q 048194          108 ISSKLANISSLTYLNLSDAGFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAVLSDNSLDGSIPRSMFE  187 (558)
Q Consensus       108 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  187 (558)
                      ++..++.+++|++|+|++|.++ .++ .+..+++|++|++++|.++ .++. ....++.|++|++++|.++. + ..+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccc-cccccccccccccccccccc-c-ccccc
Confidence            4455666666666666666665 333 3556666666666666665 3432 12333455555555555542 1 22444


Q ss_pred             CCCCCEEeCccccCC
Q 048194          188 FPMLQQLQLANNQFG  202 (558)
Q Consensus       188 l~~L~~L~l~~n~~~  202 (558)
                      +++|++|++++|+++
T Consensus       114 l~~L~~L~L~~N~i~  128 (198)
T d1m9la_         114 LVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHHSSEEEESEEECC
T ss_pred             cccccccccccchhc
Confidence            555555555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.8e-11  Score=100.82  Aligned_cols=61  Identities=26%  Similarity=0.202  Sum_probs=30.6

Q ss_pred             hccceEEECCCCcccccCchhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcC
Q 048194          468 LNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNL  529 (558)
Q Consensus       468 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l  529 (558)
                      +++|+.|++++|+++...+..|..+++|++|+|++|+++ .+|........|+.|+|++|++
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence            444455555555554444455555555555555555555 3333322333455555555555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.6e-11  Score=99.28  Aligned_cols=105  Identities=18%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CCEEECCCCCCCCCccchhhcCCCCCCEEeCcCC-cCccCCChhccCCCCCcEEecccccccccccchhhcCCCCccEEE
Q 048194           93 LRSLNLARTSFNGTQISSKLANISSLTYLNLSDA-GFAGQIPVQISRMARLVALDFSFNQFSGSISSIRWEHLLNLVCAV  171 (558)
Q Consensus        93 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  171 (558)
                      ...++.+++.+..  .|..+..+++|++|+++++ .++...+..|.++++|+.|++++|+++ .++..+|..+++|++|+
T Consensus        10 ~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Cccccccccccccccee
Confidence            3445666555544  4555666666666666544 355444455666666666666666666 44322456666666666


Q ss_pred             ccCCccCccCCccccCCCCCCEEeCccccC
Q 048194          172 LSDNSLDGSIPRSMFEFPMLQQLQLANNQF  201 (558)
Q Consensus       172 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  201 (558)
                      |++|+++ .+|.......+|++|++++|.+
T Consensus        87 Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccCCCCc-ccChhhhccccccccccCCCcc
Confidence            6666665 3444333334566666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.7e-08  Score=80.35  Aligned_cols=90  Identities=23%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             hhhccceEEECCCCcccccC--chhhcccCCCCeeeCcCCcCcccccccccCCCCCCeecCCCCcCcccch-------hh
Q 048194          466 KILNIFTSIDFSTNNFKGPI--LEDVGLLKSLYGLNLSHNALTGSIPSSFGNLKRLESLDLSMNNLSRAIP-------SQ  536 (558)
Q Consensus       466 ~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-------~~  536 (558)
                      ..++.|++|+|++|+++...  +..+..+++|+.|++++|.|+...+-.+.....|+.|++++|++.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34677888888888877543  3456788999999999999985433344455678999999998875433       23


Q ss_pred             hcCCCCCCEEeCcCCcCeeec
Q 048194          537 LASLYFLSYLNLSYNQLEGRF  557 (558)
Q Consensus       537 ~~~l~~L~~L~l~~n~l~~~~  557 (558)
                      +..+++|+.||  |.++..+|
T Consensus       142 ~~~~P~L~~LD--g~~v~p~~  160 (162)
T d1koha1         142 RERFPKLLRLD--GHELPPPI  160 (162)
T ss_dssp             HTTSTTCCEET--TEECCCCC
T ss_pred             HHHCCCCCEEC--cCCCcCCC
Confidence            56788999886  66665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5.4e-08  Score=81.67  Aligned_cols=89  Identities=20%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCchhhcccCCCCeeeCc
Q 048194          422 VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPILEDVGLLKSLYGLNLS  501 (558)
Q Consensus       422 ~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  501 (558)
                      ++.....++.|++|++++|+++..-+-             ......+++|+.||+++|.++......+....+|++|+++
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~-------------~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~  123 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDM-------------SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD  123 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGG-------------GTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCT
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchh-------------HHHHhhCCcccccccccCccccchhhhhhhccccceeecC
Confidence            334446788999999999988753211             1223457889999999999886544344455679999999


Q ss_pred             CCcCcccccc-------cccCCCCCCeec
Q 048194          502 HNALTGSIPS-------SFGNLKRLESLD  523 (558)
Q Consensus       502 ~n~l~~~~~~-------~l~~l~~L~~L~  523 (558)
                      +|++......       .+..+|+|+.||
T Consensus       124 ~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         124 GNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999754432       256789999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=3.5e-06  Score=70.59  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             CCCCCEEECcCC-cCCcc----CCcccccCCCCCEEECCCCcCcccCCccccCceeeccccchhhhhhhccceEEECCCC
Q 048194          405 NCLLQTLDLNGN-RPQGT----VPKSIAKCKMLEVLNLGNNQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTN  479 (558)
Q Consensus       405 ~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  479 (558)
                      .+.|++|+|+++ .++..    +...+...+.|++|++++|.+.......+           .......+.|++|+|++|
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l-----------a~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL-----------IELIETSPSLRVLNVESN   82 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH-----------HHHHHHCSSCCEEECCSS
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHH-----------hhhhhhcccccceeeehh
Confidence            345777777763 35432    23345556667777777776653222111           112233455666666666


Q ss_pred             cccccC----chhhcccCCCCeeeCcCCcCccc-------ccccccCCCCCCeecCCCC
Q 048194          480 NFKGPI----LEDVGLLKSLYGLNLSHNALTGS-------IPSSFGNLKRLESLDLSMN  527 (558)
Q Consensus       480 ~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~L~~N  527 (558)
                      .++...    ...+...++|++|++++|.+...       +...+...+.|+.|+++.+
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            655422    12334445566666665543311       2233344455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=5.4e-06  Score=69.41  Aligned_cols=116  Identities=16%  Similarity=0.083  Sum_probs=82.9

Q ss_pred             ccCCCCCEEECCCC-cCcccCCccccCceeeccccchhhhhhhccceEEECCCCccccc----CchhhcccCCCCeeeCc
Q 048194          427 AKCKMLEVLNLGNN-QFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGP----ILEDVGLLKSLYGLNLS  501 (558)
Q Consensus       427 ~~l~~L~~L~l~~n-~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~  501 (558)
                      .+.+.|++|+|+++ .+....-..           -...+...+.|++|+|++|.++..    +...+...+.|++|+|+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~-----------l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRS-----------LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHH-----------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHH-----------HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeee
Confidence            45689999999974 454321111           122344567899999999998753    23445667999999999


Q ss_pred             CCcCccc----ccccccCCCCCCeecCCCCcCccc-------chhhhcCCCCCCEEeCcCCcC
Q 048194          502 HNALTGS----IPSSFGNLKRLESLDLSMNNLSRA-------IPSQLASLYFLSYLNLSYNQL  553 (558)
Q Consensus       502 ~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~l~~n~l  553 (558)
                      +|.++..    +-.++...+.|++|++++|.+...       +.+.+..-++|+.|+++.+..
T Consensus        81 ~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          81 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            9999853    334577789999999999875432       345566678999999988754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.53  E-value=3e-05  Score=64.71  Aligned_cols=39  Identities=8%  Similarity=0.108  Sum_probs=19.2

Q ss_pred             CCCCCEEECcC-CcCCcc----CCcccccCCCCCEEECCCCcCc
Q 048194          405 NCLLQTLDLNG-NRPQGT----VPKSIAKCKMLEVLNLGNNQFS  443 (558)
Q Consensus       405 ~~~L~~L~l~~-n~l~~~----~~~~l~~l~~L~~L~l~~n~i~  443 (558)
                      .+.|++|++++ +.++..    +...+...+.|++|++++|.++
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            34566666655 334322    2233344555556666655554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.45  E-value=3.4e-05  Score=64.29  Aligned_cols=119  Identities=18%  Similarity=0.139  Sum_probs=79.3

Q ss_pred             ccccCCCCCEEECCC-CcCcccCCccccCceeeccccchhhhhhhccceEEECCCCcccccCc----hhhcccCCCCeee
Q 048194          425 SIAKCKMLEVLNLGN-NQFSDKFPCSLYDAPITIKGLDIKLQKILNIFTSIDFSTNNFKGPIL----EDVGLLKSLYGLN  499 (558)
Q Consensus       425 ~l~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~  499 (558)
                      ...+.++|++|++++ +.++...-..+           .......++|++|++++|.++....    ..+...++++.++
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l-----------~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~   80 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKAC-----------AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN   80 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHH-----------HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHH-----------HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhh
Confidence            345678999999987 44543211111           1223456789999999998875432    3456678999999


Q ss_pred             CcCCcCccc----ccccccCCCCCCeec--CCCCcCcc----cchhhhcCCCCCCEEeCcCCcCe
Q 048194          500 LSHNALTGS----IPSSFGNLKRLESLD--LSMNNLSR----AIPSQLASLYFLSYLNLSYNQLE  554 (558)
Q Consensus       500 l~~n~l~~~----~~~~l~~l~~L~~L~--L~~N~l~~----~~~~~~~~l~~L~~L~l~~n~l~  554 (558)
                      +++|.+...    +...+...++|+.++  +++|.+..    .+.+.+...++|+.|+++.++..
T Consensus        81 l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          81 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             hccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            999988643    335667778888744  45677754    34455667788999999877643