Citrus Sinensis ID: 048196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccEEEEccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEccccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccccccEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
mddmfqnvpkgdAIFMKWILHNWSDDHCLKLLKIYYksipedgkVIVVESilpelpetstvskrNSQLDVLMMtqnpsgkkrtkhefltlatgagfsgtrfewfTCNLWVRDFYK
Flexible Loop (DISEMBL)
MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIlpelpetstvskrnsqlDVLMMTQnpsgkkrtkhEFLTLatgagfsgtrfeWFTCNLWVRDFYK
Low Complexity Region (SEG)
MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK
Disordered region (IsUnstruct)
*********KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP********************************EFLTLATGAGFSGTRFEWFTCNLWVRDFY*
Disordered Region (DISOPRED)
MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK
Disordered Region (DISEMBL)
MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK
Disordered Region (DISPRO)
****FQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q43239	354	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.319	0.575	3e-34
A9X7L0	364	Anthranilate N-methyltran	N/A	no	0.982	0.310	0.530	3e-33
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.314	0.539	7e-33
Q8GU25	365	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.309	0.539	2e-31
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.322	0.530	2e-31
O23760	370	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.305	0.539	6e-31
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.309	0.530	9e-31
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.982	0.309	0.504	2e-30
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.965	0.304	0.556	3e-30
P59049	343	Quercetin 3-O-methyltrans	N/A	no	0.982	0.329	0.522	4e-30

>sp|Q43239|COMT1_ZINEL Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 82/113 (72%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VPKGDAIFMKWILH+WSD HCL++LK  YKS+PE+GKVIV E ILPE P+T+  +
Sbjct: 242 DMFESVPKGDAIFMKWILHDWSDAHCLQVLKNCYKSLPENGKVIVAECILPEAPDTTPAT 301

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           +    +DV+M+  NP GK+RT+ EF  LA GAGF G        N WV +F K
Sbjct: 302 QNVIHIDVIMLAHNPGGKERTEKEFEALAKGAGFKGFNKAACALNTWVMEFCK 354

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Zinnia elegans (taxid: 34245)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1

 Score =  139 bits (351), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 84/113 (74%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           +MF++VP+GDAI MKWILH W D+ CL++LK  YK+ PE+GKVIV+ S++PE PE S+ +
Sbjct: 252 NMFESVPEGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSA 311

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           +  S LDVL+MT++  G++RT+ EF  LA GAGF G  F    CNL + +F+K
Sbjct: 312 RETSLLDVLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364

Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others.

Ruta graveolens (taxid: 37565)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 1

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 80/113 (70%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPK DAIFMKWI H+WSD+HCLK LK  Y+++P +GKV+V E ILPE P+TS  +
Sbjct: 247 DMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAAT 306

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +D++M+  NP GK+RT+ EF  LA GAGF+G R        WV +F+K
Sbjct: 307 KNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum annuum (taxid: 4072)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 79/113 (69%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPKGDAIFMKWI H+WSD+HCLK LK  Y ++P++GKVI+ E ILP  P+TS  +
Sbjct: 251 DMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDTSLAT 310

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +DV+M+  NP GK+RT+ EF  LA G+GF G R      N +V +F K
Sbjct: 311 KGVVHIDVVMLAHNPGGKERTEQEFEALAKGSGFQGIRVACNAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Rosa chinensis (taxid: 74649)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 79/113 (69%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPKGDAIFMKWI H+WSDDHC KLLK  Y+++P++GKVI+ E +LPE P+TS  +
Sbjct: 238 DMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLAT 297

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           +    +DV+M+  NP GK+RT+ EF  LA GAGF   R      N W+ +  K
Sbjct: 298 QNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 76/113 (67%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPKGDAIFMKWI H+WSD+HCLK LK  Y ++PE GKVIV E ILP  P+ S  +
Sbjct: 256 DMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLAT 315

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +D +M+  NP GK+RT+ EF  LA GAGF G +      N +V +F K
Sbjct: 316 KGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 78/113 (69%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPKGDAIFMKWI H+WSD+HCLK LK  Y ++P++GKVI+ E ILP  P++S  +
Sbjct: 251 DMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLAT 310

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +DV+M+  NP GK+RT+ EF  LA GAGF G        N +V +F K
Sbjct: 311 KGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 79/113 (69%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF ++PK DA+FMKWI H+WSD+HCLK LK  Y+++P++GKVIV E ILP  P++S  +
Sbjct: 251 DMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLAT 310

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +DV+M+  NP GK+RT+ EF  LA GAGF G +      N ++ +F K
Sbjct: 311 KGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 79/115 (68%), Gaps = 4/115 (3%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPK DA+FMKWI H+WSD HCLK LK  Y ++PE+GKVI+VE ILP  P+TS  +
Sbjct: 251 DMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLAT 310

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTC--NLWVRDFYK 115
           K    +DV+M+  NP GK+RT+ EF  LA GAGF G  FE   C  N  V +F K
Sbjct: 311 KGVVHVDVIMLAHNPGGKERTEKEFEGLAKGAGFQG--FEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P59049|OMT1_CHRAE Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 79/113 (69%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VPKGDAIFMKWI H+WSD+HCLKLLK  Y ++P +GKVI+ E ILPE+P++S  +
Sbjct: 227 DMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECILPEVPDSSLAT 286

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +DV+ +  NP GK+RT+ EF  LA  AGF G +      N ++ +F K
Sbjct: 287 KGVVHIDVITVAHNPGGKERTEKEFEALAKAAGFQGFQVFCNAFNTYIIEFSK 339

Methylates OH residues of flavonoid and phenylpropanoid compounds and shows a higher affinity for flavonoid than phenylpropanoid substrates. Substrate preference is quercetin (flavonoid) = luteolin (flavonoid) > 5-hydroxyferulic acid (phenylpropanoid) > caffeic acid (phenylpropanoid) >> apigenin (flavonoid) = kempferol (flavonoid). 3,4-dimethylquercetin is not a substrate.

Chrysosplenium americanum (taxid: 36749)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
284437809	377	O-methyltransferase-like protein [Prunus	0.982	0.299	0.699	2e-44
145695037	353	O-methyltransferase [Citrus sinensis x C	0.982	0.320	0.716	7e-42
224128073	358	catechol o-methyltransferase related [Po	0.982	0.315	0.672	2e-41
224068173	359	catechol o-methyltransferase [Populus tr	0.982	0.314	0.692	5e-41
224068181	336	catechol o-methyltransferase [Populus tr	0.982	0.336	0.692	2e-40
224158666	129	predicted protein [Populus trichocarpa]	0.982	0.875	0.692	2e-40
225453646	357	PREDICTED: caffeic acid 3-O-methyltransf	0.982	0.316	0.663	5e-40
356573271	372	PREDICTED: caffeic acid 3-O-methyltransf	0.982	0.303	0.649	2e-38
388512375	377	unknown [Lotus japonicus]	0.982	0.299	0.628	5e-38
449524436	361	PREDICTED: caffeic acid 3-O-methyltransf	0.982	0.313	0.628	1e-37

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 97/113 (85%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VP GDAIFMKWILH+WSD+HCLKLLK  YK+IP++GKVIVVE++LP +PETST +
Sbjct: 265 DMFASVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTAT 324

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K  SQLDV+MMTQNP GK+R++ EF+ LATGAGFSG R+E F CN WV +F+K
Sbjct: 325 KTTSQLDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata]

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 94/113 (83%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMFQ+VPKGDAIFMK +LH+W+D+HCLKLLK  YKSIPEDGKVIVVES+LPE+P TS  S
Sbjct: 241 DMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIES 300

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K NS LDVLMM Q+P GK+RT+HEF+TLATGAGF G   E    +LWV +FYK
Sbjct: 301 KSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGSLWVMEFYK 353

Source: Citrus sinensis x Citrus reticulata

Species: Citrus sinensis x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 95/113 (84%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VPKGDAIF+KWILH+WSDDHCLKLLK  YK+IP++GKVIV+ES+L    +TS  +
Sbjct: 246 DMFESVPKGDAIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAA 305

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           +  SQLDVLMMTQNP GK+RT+HEF+ LATGAGF G ++E F CN WV +F+K
Sbjct: 306 RAISQLDVLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 94/114 (82%), Gaps = 1/114 (0%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VPKGDAIF+KWILHNWSDDHCLKLLK  YK+IPEDGKVIV+ES+LP   +TS  +
Sbjct: 246 DMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAA 305

Query: 63  KRNSQLDVL-MMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K  SQLDVL MM+QNP GK+RT+ EF+ LAT AGF G +FE F CN WV +F+K
Sbjct: 306 KAISQLDVLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 93/114 (81%), Gaps = 1/114 (0%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VPKGDAIF+KWILHNWSDDHCLKLLK  YK+IP DGKVIV+ES+LP   +TS  +
Sbjct: 223 DMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAA 282

Query: 63  KRNSQLDVLMM-TQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K  SQLDVLMM TQNP GK+RT+ EF+ LAT AGF G +FE F CN WV +F+K
Sbjct: 283 KAISQLDVLMMITQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224158666|ref|XP_002337998.1| predicted protein [Populus trichocarpa] gi|222870203|gb|EEF07334.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 94/114 (82%), Gaps = 1/114 (0%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VPKGDAIF+KWILHNWSDDHCLKLLK  YK+IPEDGKVIV+ES+LP   +TS  +
Sbjct: 16  DMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAA 75

Query: 63  KRNSQLDVL-MMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K  SQLDVL MM+QNP GK+RT+ EF+ LAT AGF G +FE F CN WV +F+K
Sbjct: 76  KAISQLDVLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453646|ref|XP_002267543.1| PREDICTED: caffeic acid 3-O-methyltransferase 1 [Vitis vinifera]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 90/113 (79%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VPKG+AIFMKWILH+WSD+HCLKLLK  Y ++PE GKVIVVE +LP  PETS V 
Sbjct: 245 DMFESVPKGEAIFMKWILHDWSDEHCLKLLKNCYNALPEHGKVIVVEGVLPAAPETSAVV 304

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K  SQ D++MM QNP GK+RT+ EFL LATGAGF+G RFE F    WV +F+K
Sbjct: 305 KAVSQTDLIMMAQNPGGKERTREEFLDLATGAGFAGIRFECFVLTYWVMEFFK 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573271|ref|XP_003554786.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 92/114 (80%), Gaps = 1/114 (0%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF+NVPKGDAIFMKWILH+WSD++CLKLLK  Y +IP+DGKVIVVE++LP +PETS  +
Sbjct: 259 DMFENVPKGDAIFMKWILHDWSDEYCLKLLKNCYDAIPDDGKVIVVEAVLPIIPETSNAA 318

Query: 63  -KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
            K  SQ DVLMMTQNP GK+R+  EF+ LAT AGFSG R+E +    W+ +F+K
Sbjct: 319 WKAVSQTDVLMMTQNPGGKERSDQEFMDLATAAGFSGIRYECYVRTFWIMEFFK 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512375|gb|AFK44249.1| unknown [Lotus japonicus]

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 91/113 (80%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VP GDAIFMKWILH+WSD+HCLKLLK  YK+IP+DGKVIVV+S++P +PET+T +
Sbjct: 265 DMFESVPTGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDDGKVIVVDSVVPAVPETTTAA 324

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K     D++MMTQNP GK+RT+HEF+ LA G+GF G RF      LWV +F+K
Sbjct: 325 KNVFNSDLIMMTQNPGGKERTEHEFMELAKGSGFRGIRFVCSVSGLWVMEFFK 377

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524436|ref|XP_004169229.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 89/113 (78%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF++VP GDAIFMKWILH+WSDDHC KLLK  Y +IP+DGK+I+V+S++P  PET+ V+
Sbjct: 248 DMFESVPNGDAIFMKWILHDWSDDHCTKLLKNCYNAIPDDGKIIIVDSVIPTEPETTNVT 307

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K  +Q DVLMMTQNP GK+RT+ EF +LAT AGF    F+ F  NLWV +F K
Sbjct: 308 KATAQADVLMMTQNPGGKERTRDEFKSLATKAGFKHVIFQCFVSNLWVIEFLK 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.852	0.269	0.571	3.9e-28
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.982	0.321	0.495	2.8e-27
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.982	0.307	0.473	6.6e-26
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.982	0.313	0.469	4.6e-25
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.982	0.300	0.460	1.1e-23
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.817	0.246	0.515	1.1e-23
TAIR|locus:2015519	205	AT1G62900 [Arabidopsis thalian	0.817	0.458	0.515	1.1e-23
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.973	0.308	0.415	3.4e-22
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.982	0.296	0.438	4.3e-22
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.817	0.246	0.526	1.7e-21

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 56/98 (57%), Positives = 74/98 (75%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMF +VPKGDAIFMKWI H+WSD+HC+K LK  Y+S+PEDGKVI+ E ILPE P++S  +
Sbjct:   249 DMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLST 308

Query:    63 KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
             K+   +D +M+  NP GK+RT+ EF  LA  +GF G +
Sbjct:   309 KQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIK 346

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 56/113 (49%), Positives = 78/113 (69%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMF N PKG+AIFMKW+LH+W DDHC+K+L   Y+S+P +GKVIVV+ ++PE P  + + 
Sbjct:   238 DMFTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLD 297

Query:    63 KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
             +   Q ++ MM  NPSGK+RTK EF  LA  AGFS  +  + +    V +F+K
Sbjct:   298 RSLFQFELFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTSLCFSVLEFHK 350

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/114 (47%), Positives = 76/114 (66%)

Query:     3 DMFQNVPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
             DMF +VP+G DAI MKWILH+WSD+HC +LLK  Y ++PE GKV+VVE +LPE  + +  
Sbjct:   255 DMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAR 314

Query:    62 SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
              +    +D++M+  NP GK+R + EF  LA  AGF+G +  +   N W  +F K
Sbjct:   315 EQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 53/113 (46%), Positives = 73/113 (64%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMFQ VP GDAI MKWILH+WSD+HC  LLK  Y ++P  GKV++VE ILP  PE +  +
Sbjct:   248 DMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKA 307

Query:    63 KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
             +    +D++M+  NP G++R + EF  LA GAGF   +  +   N +  +F K
Sbjct:   308 QGVFHVDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 53/115 (46%), Positives = 74/115 (64%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             +MF N+P+GDAI +KWILHNW D  C+K+LK  Y ++P +G VI++E ILPE PE +  S
Sbjct:   262 NMFDNIPRGDAIILKWILHNWGDKECVKILKNCYTALPVNGTVIILEYILPETPEETLAS 321

Query:    63 KRNSQLDV-LMMTQNPSGKKRTKHEFLTLATGAGFSGT-RFEWFTCNLWVRDFYK 115
             +     D+ +M+    SGK+RT+ E L LA  AGFSG     +   N+W  +F K
Sbjct:   322 QLAFDFDLGMMLFFGASGKERTEKELLELAREAGFSGDYTATYIFANVWAHEFTK 376

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/95 (51%), Positives = 72/95 (75%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMF+ +PKGDAIFMKWILH+W+D+ C+K+LK Y+KS+PE GKVI+VE + PE P+ + +S
Sbjct:   268 DMFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDIS 327

Query:    63 KRNS-QLDVLMMTQNPSGKKRTKHEFLTLATGAGF 96
                   +D+LM+  +  GK+R+  +F TLA+ +GF
Sbjct:   328 SNIVFGMDMLMLAVSSGGKERSLSQFETLASDSGF 362

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2015519 AT1G62900 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/95 (51%), Positives = 72/95 (75%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMF+ +PKGDAIFMKWILH+W+D+ C+K+LK Y+KS+PE GKVI+VE + PE P+ + +S
Sbjct:    92 DMFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDIS 151

Query:    63 KRNS-QLDVLMMTQNPSGKKRTKHEFLTLATGAGF 96
                   +D+LM+  +  GK+R+  +F TLA+ +GF
Sbjct:   152 SNIVFGMDMLMLAVSSGGKERSLSQFETLASDSGF 186

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 47/113 (41%), Positives = 73/113 (64%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP-ELPETSTV 61
             DMF  +P+G+ I MKWILH+W+D+ C+++LK   K++PE G++IV+E I+P E+ ET   
Sbjct:   249 DMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPREVSETDLA 308

Query:    62 SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
             +K +   D+ MM+    GK+RTK EF  LA  AGF   +  +   + W+ + Y
Sbjct:   309 TKNSLSADLTMMSLTSGGKERTKKEFEDLAKEAGFKLPKIIYGAYSYWIIELY 361

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 50/114 (43%), Positives = 73/114 (64%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMF  VPKGDA+FMKWILH+W D+ C+K+LK  +KS+PE GK+I+VE + P+ P+   +S
Sbjct:   268 DMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEPKGGDLS 327

Query:    63 KRNS-QLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
                   +D+LM+TQ   GK+R+  +F  LA  +GF          +  V +F+K
Sbjct:   328 SNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSVIEFHK 381

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 50/95 (52%), Positives = 66/95 (69%)

Query:     3 DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
             DMF  VPKGDAIFMKWILH+W D+ C+K+LK  +KS+PE GKVI+VE I P  P+ +  S
Sbjct:   268 DMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFS 327

Query:    63 KRNSQ-LDVLMMTQNPSGKKRTKHEFLTLATGAGF 96
                   +D+LM+TQ   GK+R+  +F  LA  +GF
Sbjct:   328 CNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGF 362

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	5e-36
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	0.003

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  122 bits (308), Expect = 5e-36
 Identities = 41/90 (45%), Positives = 63/90 (70%), Gaps = 2/90 (2%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           D F++VP+ DAI +KW+LH+WSD+ C+K+LK  Y+++P  GKVIVVE +LPE P+    +
Sbjct: 152 DFFESVPEADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDPDDDLET 211

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLAT 92
           +    LD+ M+  N  GK+RT+ E+  L +
Sbjct: 212 EVL-LLDLNMLVLNG-GKERTEKEWRKLLS 239

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 8/53 (15%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 3   DMFQN-VPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE 54
           D+++   P+ DA+    IL++ ++     + K  + ++   G++++++ ++ +
Sbjct: 207 DIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.92
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.74
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.35
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.34
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.21
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.2
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.19
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.15
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.13
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.05
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.0
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.0
PLN02490	340	MPBQ/MSBQ methyltransferase	98.99
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.98
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.96
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.94
PLN02336	475	phosphoethanolamine N-methyltransferase	98.94
PLN02244	340	tocopherol O-methyltransferase	98.89
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.86
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.81
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.75
PRK11207	197	tellurite resistance protein TehB; Provisional	98.67
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.67
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.62
PRK08317	241	hypothetical protein; Provisional	98.61
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.56
PLN02336	475	phosphoethanolamine N-methyltransferase	98.49
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.48
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.47
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.47
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.47
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.43
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.32
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.31
TIGR03438	301	probable methyltransferase. This model represents	98.3
KOG2361	264	consensus Predicted methyltransferase [General fun	98.25
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.21
PRK12335	287	tellurite resistance protein TehB; Provisional	98.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.2
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.17
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.16
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.12
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.12
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.06
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.05
PRK05785	226	hypothetical protein; Provisional	98.04
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.04
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.03
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.02
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.01
PRK06922	677	hypothetical protein; Provisional	98.0
PRK04266	226	fibrillarin; Provisional	98.0
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.96
PRK06202	232	hypothetical protein; Provisional	97.9
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.9
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.9
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.88
KOG4300	252	consensus Predicted methyltransferase [General fun	97.88
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.87
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.86
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.86
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.85
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.84
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.81
PLN03075	296	nicotianamine synthase; Provisional	97.73
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.7
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.54
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.53
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.51
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.47
PTZ00146	293	fibrillarin; Provisional	97.37
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.36
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.36
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.33
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.28
PRK14968	188	putative methyltransferase; Provisional	97.16
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.14
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.11
COG4798	238	Predicted methyltransferase [General function pred	97.11
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.1
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.08
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.91
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	96.7
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.69
KOG2899	288	consensus Predicted methyltransferase [General fun	96.69
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.63
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.5
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.41
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.41
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.33
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.18
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.13
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.07
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.04
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	95.88
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	95.8
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.61
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	95.38
PRK14967	223	putative methyltransferase; Provisional	95.34
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.21
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	94.95
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	94.81
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	94.45
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.41
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.24
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	94.2
KOG1331	293	consensus Predicted methyltransferase [General fun	94.03
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	93.85
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	93.6
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	93.13
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	92.98
COG3315	297	O-Methyltransferase involved in polyketide biosynt	92.9
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	92.85
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	92.59
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	92.38
PHA03411	279	putative methyltransferase; Provisional	92.33
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	92.21
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	91.97
cd01842	183	SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG	91.9
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	91.74
TIGR00438	188	rrmJ cell division protein FtsJ.	91.61
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	91.48
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	91.08
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	90.8
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	90.61
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	90.57
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	90.37
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	90.23
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	90.06
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	89.28
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	89.21
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	88.43
KOG3010	261	consensus Methyltransferase [General function pred	88.36
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	88.33
PRK00811	283	spermidine synthase; Provisional	87.43
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	87.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.12
PRK14904	445	16S rRNA methyltransferase B; Provisional	87.1
COG2521	287	Predicted archaeal methyltransferase [General func	86.65
PF10017	127	Methyltransf_33: Histidine-specific methyltransfer	86.65
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	85.93
COG4123	248	Predicted O-methyltransferase [General function pr	85.82
PRK07402	196	precorrin-6B methylase; Provisional	85.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	85.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	85.2
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	84.34
PF03269	177	DUF268: Caenorhabditis protein of unknown function	84.13
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	83.88
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	83.78
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	83.76
COG4301	321	Uncharacterized conserved protein [Function unknow	83.73
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	81.49
PRK04457	262	spermidine synthase; Provisional	81.28
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	81.04
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	80.35
PLN02366	308	spermidine synthase	80.26

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.95  E-value=6.5e-28  Score=170.25  Aligned_cols=115  Identities=44%  Similarity=0.730  Sum_probs=103.0

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC-CCCCchhhhhchhccchhcccCCCc
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE-LPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      .||||.+.|++|+||++||||||+|++|+++|+||+++|+|||+|+|.|.+.++ ....+..+......|+.|+..+.+|
T Consensus       227 ~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G  306 (342)
T KOG3178|consen  227 AGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG  306 (342)
T ss_pred             cccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc
Confidence            489999999999999999999999999999999999999999999999998886 3333223445677899999988779


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      ++||.+||..++.++||.+.++.-..-..++||++|
T Consensus       307 kert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k  342 (342)
T KOG3178|consen  307 KERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK  342 (342)
T ss_pred             eeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence            999999999999999999999998889999999986

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.92  E-value=9.8e-26  Score=154.74  Aligned_cols=91  Identities=26%  Similarity=0.608  Sum_probs=77.9

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCC--CEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED--GKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg--g~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +||||+++|.+|+|++++|||+|+|+++.+||++++++|+||  |+|+|+|.+.++.+..+........+|++|++++ +
T Consensus       149 ~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~  227 (241)
T PF00891_consen  149 PGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-G  227 (241)
T ss_dssp             ES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-S
T ss_pred             cccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-C
Confidence            599999999999999999999999999999999999999999  9999999999988766532212357999999976 7


Q ss_pred             ceeCCHHHHHHHHH
Q 048196           79 GKKRTKHEFLTLAT   92 (115)
Q Consensus        79 g~~rt~~e~~~ll~   92 (115)
                      |++||.+||++||+
T Consensus       228 G~~rt~~e~~~ll~  241 (241)
T PF00891_consen  228 GKERTEEEWEALLK  241 (241)
T ss_dssp             SS-EEHHHHHHHHH
T ss_pred             CCCcCHHHHHHHhC
Confidence            99999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.74  E-value=1.6e-17  Score=117.65  Aligned_cols=99  Identities=11%  Similarity=0.240  Sum_probs=73.7

Q ss_pred             CCCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhch-hccchhcccCCC
Q 048196            1 MDDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNS-QLDVLMMTQNPS   78 (115)
Q Consensus         1 ~gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (115)
                      .||+++ ++|.+|+|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++..... ...... ...+.|...  -
T Consensus       205 ~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~--~  281 (306)
T TIGR02716       205 AVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFS--V  281 (306)
T ss_pred             ecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch-hhHHHHHHHHcccccc--c
Confidence            489997 67778999999999999999999999999999999999999999887653221 111111 112222211  1


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFE  102 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~  102 (115)
                      ...++.+||.+||++|||+.++++
T Consensus       282 ~~~~~~~e~~~ll~~aGf~~v~~~  305 (306)
T TIGR02716       282 LGFKEQARYKEILESLGYKDVTMV  305 (306)
T ss_pred             ccCCCHHHHHHHHHHcCCCeeEec
Confidence            123457999999999999988764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.35  E-value=3.4e-12  Score=86.05  Aligned_cols=80  Identities=23%  Similarity=0.342  Sum_probs=64.5

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+||+.|++-|++|++.++.|++|+++|+|+|.|+|-|.+.....         ..+|-     ..++..||.+.|+++
T Consensus       123 YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~l  188 (218)
T PF05891_consen  123 YDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFREL  188 (218)
T ss_dssp             EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHH
T ss_pred             EeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHH
Confidence            4999999999999999999999999999999999999999877541         11231     246788999999999


Q ss_pred             HHhCCCCeeEEEEc
Q 048196           91 ATGAGFSGTRFEWF  104 (115)
Q Consensus        91 l~~aGf~~~~~~~~  104 (115)
                      |++||+++++...-
T Consensus       189 F~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  189 FKQAGLRLVKEEKQ  202 (218)
T ss_dssp             HHHCT-EEEEEEE-
T ss_pred             HHHcCCEEEEeccc
Confidence            99999999875443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00740 methyltransferase, putative

Probab=99.34  E-value=4.9e-13  Score=91.74  Aligned_cols=105  Identities=12%  Similarity=0.205  Sum_probs=72.7

Q ss_pred             CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc-------
Q 048196            2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM-------   73 (115)
Q Consensus         2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~-------   73 (115)
                      ||+.+ +.+..|++++..++|++++++..+++++++++|+|||.+++.|.+.+++......     ...+.+.       
T Consensus       113 ~d~~~~~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~  187 (239)
T TIGR00740       113 NDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGY  187 (239)
T ss_pred             CChhhCCCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCC
Confidence            56766 5566799999999999999889999999999999999999999876654322110     0010000       


Q ss_pred             ----------ccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEE
Q 048196           74 ----------TQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVR  111 (115)
Q Consensus        74 ----------~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~li  111 (115)
                                .....-+..|.+++.+++++|||+.+++......++++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~  235 (239)
T TIGR00740       188 SELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELWFQCFNFGSL  235 (239)
T ss_pred             CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHH
Confidence                      00001245799999999999999977654333333333

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.21  E-value=4e-11  Score=77.93  Aligned_cols=108  Identities=21%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc---cc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM---TQ   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~---~~   75 (115)
                      ||..+ +.+.  .|++++..++|+++|.  .+.|+++++.|+|||+++|.|...++..-....  ..........   ..
T Consensus        33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~  108 (160)
T PLN02232         33 GDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATV  108 (160)
T ss_pred             echhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHH
Confidence            56655 5554  3999999999999874  799999999999999999999876543111000  0000000000   00


Q ss_pred             CCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEE
Q 048196           76 NPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDF  113 (115)
Q Consensus        76 ~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~  113 (115)
                      ...           ..-.+.+|+.++|+++||+.++..... +..++..+
T Consensus       109 ~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~  158 (160)
T PLN02232        109 YDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA  158 (160)
T ss_pred             hCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence            000           123588999999999999998877765 44455444

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.20  E-value=2.5e-10  Score=79.54  Aligned_cols=109  Identities=22%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchh--c-cc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLM--M-TQ   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~--~-~~   75 (115)
                      ||..+ |++.  .|+|++..++|+++|.  .++|+++++.|+|||++++.|...++.+-.+...  ...+...+  . ..
T Consensus       134 ~d~~~lp~~~~sfD~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~  209 (261)
T PLN02233        134 GDATDLPFDDCYFDAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATG  209 (261)
T ss_pred             cccccCCCCCCCEeEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHH
Confidence            56555 5664  4999999999999874  7899999999999999999998766532111100  00000000  0 00


Q ss_pred             CCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEE
Q 048196           76 NPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFY  114 (115)
Q Consensus        76 ~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~  114 (115)
                      .+.           ..-.+.+|+.++++++||+.++..... +..++.-++
T Consensus       210 ~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        210 YGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             hCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence            000           234689999999999999999887775 455555543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.19  E-value=2.8e-10  Score=79.41  Aligned_cols=96  Identities=14%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ ++|.  .|+|++..++||+++++..++|+++++.|+|||++++.|...........  ....     .... ..
T Consensus       106 ~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~--~~~~-----~~~~-~~  177 (263)
T PTZ00098        106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE--EFKA-----YIKK-RK  177 (263)
T ss_pred             CCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH--HHHH-----HHHh-cC
Confidence            57766 6664  49999999999999777899999999999999999999987654321110  0100     0100 11


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ....+.+++.++|+++||+.++.....
T Consensus       178 ~~~~~~~~~~~~l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        178 YTLIPIQEYGDLIKSCNFQNVVAKDIS  204 (263)
T ss_pred             CCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence            223588999999999999999887654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.15  E-value=3.3e-11  Score=82.75  Aligned_cols=109  Identities=18%  Similarity=0.229  Sum_probs=41.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhcc-----chhc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLD-----VLMM   73 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~-----l~~~   73 (115)
                      ||..+ |+|.  .|++++++.+|+++|.  .+.|+++++.|+|||+++|+|+..++.+--..  .+..++.     +..+
T Consensus       105 ~da~~lp~~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~--~~~~y~~~ilP~~g~l  180 (233)
T PF01209_consen  105 GDAEDLPFPDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLRA--LYKFYFKYILPLIGRL  180 (233)
T ss_dssp             -BTTB--S-TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH--HHHH------------
T ss_pred             cCHHHhcCCCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhhc--eeeeeecccccccccc
Confidence            56666 6775  3999999999999985  67999999999999999999998876521100  0000000     0000


Q ss_pred             ccCCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           74 TQNPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        74 ~~~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                       ...+           .+-.+.+|+.++++++||+.++..+.. |..+++.++|
T Consensus       181 -~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  181 -LSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             ------------------------------------------------------
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence             0001           123367899999999999998887764 6677776655

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.13  E-value=1.4e-10  Score=80.05  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-h-h---hhchhccchh--c
Q 048196            2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-V-S---KRNSQLDVLM--M   73 (115)
Q Consensus         2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~-~---~~~~~~~l~~--~   73 (115)
                      ||+.+ +.+..|++++..++|++++++..+++++++++|+|||.+++.|.+..++..... . .   .+........  .
T Consensus       116 ~d~~~~~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei  195 (247)
T PRK15451        116 GDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEI  195 (247)
T ss_pred             CChhhCCCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHH
Confidence            55555 455579999999999999988999999999999999999999977655432211 0 0   0000001100  0


Q ss_pred             -----ccCCCceeCCHHHHHHHHHhCCCCeeEE
Q 048196           74 -----TQNPSGKKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        74 -----~~~~~g~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                           .....-...|.++..+||++|||+.+.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~  228 (247)
T PRK15451        196 SQKRSMLENVMLTDSVETHKARLHKAGFEHSEL  228 (247)
T ss_pred             HHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence                 0000112348899999999999987654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.10  E-value=1.4e-09  Score=73.94  Aligned_cols=109  Identities=21%  Similarity=0.242  Sum_probs=74.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc----c
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM----T   74 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~----~   74 (115)
                      +|+.+ +.+.  .|+|++++++|++++.  ..+|+++.+.|+|||++++.+...+....-.   .....+...++    .
T Consensus       110 ~d~~~~~~~~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  184 (239)
T PRK00216        110 GDAEALPFPDNSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGK  184 (239)
T ss_pred             cccccCCCCCCCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHH
Confidence            45555 3332  4999999999999874  6889999999999999999998765432110   00000000000    0


Q ss_pred             cCCC------------ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           75 QNPS------------GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        75 ~~~~------------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                      ...+            ...++.++|.++|+++||+.+++.... +..+++.++|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        185 LISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence            0001            123578899999999999999988864 7789998876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.05  E-value=1.9e-09  Score=73.47  Aligned_cols=109  Identities=18%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhcc---
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMT---   74 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~---   74 (115)
                      ||..+ +++.  .|+|++...+|++++.  .++|+++.+.|+|||++++.|...+....   .... ...+...+-.   
T Consensus       103 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~  177 (231)
T TIGR02752       103 GNAMELPFDDNSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGK  177 (231)
T ss_pred             echhcCCCCCCCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhH
Confidence            45555 4554  4999999999999875  58999999999999999998865443211   1000 0000000000   


Q ss_pred             ------------cCCCceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           75 ------------QNPSGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        75 ------------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                                  ........+.+++.++|+++||+.++++... +..+++.++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence                        0001123578899999999999999998886 7888888876

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.00  E-value=4.2e-09  Score=72.44  Aligned_cols=109  Identities=24%  Similarity=0.293  Sum_probs=75.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccch-hccc--
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVL-MMTQ--   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~-~~~~--   75 (115)
                      ||..+ |+|.  .|+|.+++.||+++|  ..+.|+++++.|+|||+++|.|+..++.+...   .....+.+. .+-.  
T Consensus       108 ~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g  182 (238)
T COG2226         108 GDAENLPFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIG  182 (238)
T ss_pred             echhhCCCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhc
Confidence            66777 7885  399999999999997  57999999999999999999999887653321   111112222 1100  


Q ss_pred             --CC-Cc-----------eeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           76 --NP-SG-----------KKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        76 --~~-~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                        .. +.           +..+.+++.++++++||+.+...... +..++.-+.|
T Consensus       183 ~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K  237 (238)
T COG2226         183 KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK  237 (238)
T ss_pred             eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence              00 11           23478899999999999998855554 4555555443

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.00  E-value=4.6e-09  Score=70.71  Aligned_cols=109  Identities=18%  Similarity=0.190  Sum_probs=71.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhccc---
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQ---   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~---   75 (115)
                      ||+.+ +.+.  .|+++++.++|+.++  ...+++++++.|+|||++++.+...+......  . ....+...++..   
T Consensus        95 ~d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~  169 (223)
T TIGR01934        95 ADAEALPFEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLK--K-FYKFYLKNVLPSIGG  169 (223)
T ss_pred             cchhcCCCCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhH--H-HHHHHHHHhhhhhhh
Confidence            45555 4443  499999999999887  46899999999999999999987654331110  0 000000000000   


Q ss_pred             ----CCC---------ceeCCHHHHHHHHHhCCCCeeEEEEcCCc-eEEEEEEC
Q 048196           76 ----NPS---------GKKRTKHEFLTLATGAGFSGTRFEWFTCN-LWVRDFYK  115 (115)
Q Consensus        76 ----~~~---------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~lie~~~  115 (115)
                          ..+         ....+.++|..+|+++||+.+++.+.... ..+++++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       170 LISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             hhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence                000         12347889999999999999998888644 56777765

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.99  E-value=4e-09  Score=75.97  Aligned_cols=89  Identities=21%  Similarity=0.313  Sum_probs=64.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +++.  .|+|++..++|+++|.  .++|+++++.|+|||++++.+...++...    .+.  ..+..+      
T Consensus       167 gD~e~lp~~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~----~r~--~~~~~~------  232 (340)
T PLN02490        167 GDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWL----SRF--FADVWM------  232 (340)
T ss_pred             ccHHhCCCCCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhH----HHH--hhhhhc------
Confidence            56555 5553  4999999999999986  47899999999999999998765443211    110  011111      


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                       ...+.+|+.++|+++||+.+++..+.
T Consensus       233 -~~~t~eEl~~lL~~aGF~~V~i~~i~  258 (340)
T PLN02490        233 -LFPKEEEYIEWFTKAGFKDVKLKRIG  258 (340)
T ss_pred             -cCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence             12578999999999999999887764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.98  E-value=4.6e-09  Score=73.32  Aligned_cols=93  Identities=14%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +++.  .|+|+...++|++++.  .++++++++.|+|||++++.+....... ...     ...+..+... ..
T Consensus       135 ~d~~~l~~~~~~fD~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~-----~~~~~~~~~~-~~  205 (272)
T PRK11873        135 GEIEALPVADNSVDVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-PEE-----IRNDAELYAG-CV  205 (272)
T ss_pred             cchhhCCCCCCceeEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-CHH-----HHHhHHHHhc-cc
Confidence            56655 5554  3999999999998875  6899999999999999999998765421 111     1112222221 13


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      +...+..+|.++|+++||..+++..
T Consensus       206 ~~~~~~~e~~~~l~~aGf~~v~i~~  230 (272)
T PRK11873        206 AGALQEEEYLAMLAEAGFVDITIQP  230 (272)
T ss_pred             cCCCCHHHHHHHHHHCCCCceEEEe
Confidence            4567889999999999999987644

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.96  E-value=6.8e-09  Score=74.42  Aligned_cols=84  Identities=15%  Similarity=0.094  Sum_probs=60.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch--hhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST--VSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++..++||.+|.  ..+|++++++|+|||++++.+.+.+.......  ..++.     .|-   ..-..+|.+++.
T Consensus       190 FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~-----~~~---~~~~lps~~~l~  259 (322)
T PRK15068        190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA-----KMR---NVYFIPSVPALK  259 (322)
T ss_pred             cCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh-----cCc---cceeCCCHHHHH
Confidence            4999999999999875  68999999999999999887766665432210  01110     010   011246899999


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      +|++++||+.+++...
T Consensus       260 ~~L~~aGF~~i~~~~~  275 (322)
T PRK15068        260 NWLERAGFKDVRIVDV  275 (322)
T ss_pred             HHHHHcCCceEEEEeC
Confidence            9999999999988755

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.94  E-value=2.9e-09  Score=68.13  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..+||+++|  ..++|+++++.|+|||.+++.+...... ..   ..... +...... ......+|.++|.++
T Consensus        79 fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~---~~~~~-~~~~~~~-~~~~~~~~~~~~~~l  150 (161)
T PF13489_consen   79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDP-SP---RSFLK-WRYDRPY-GGHVHFFSPDELRQL  150 (161)
T ss_dssp             EEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSH-HH---HHHHH-CCGTCHH-TTTTEEBBHHHHHHH
T ss_pred             hhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcch-hh---hHHHh-cCCcCcc-CceeccCCHHHHHHH
Confidence            499999999999997  5899999999999999999999876431 11   00111 1111110 024567899999999


Q ss_pred             HHhCCCCeeE
Q 048196           91 ATGAGFSGTR  100 (115)
Q Consensus        91 l~~aGf~~~~  100 (115)
                      ++++||++++
T Consensus       151 l~~~G~~iv~  160 (161)
T PF13489_consen  151 LEQAGFEIVE  160 (161)
T ss_dssp             HHHTTEEEEE
T ss_pred             HHHCCCEEEE
Confidence            9999999875

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.94  E-value=8.4e-09  Score=77.16  Aligned_cols=92  Identities=15%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+++ ++|.  .|+|++..+++|++|.  .++|+++++.|+|||++++.|...........   ....     .. ..+
T Consensus       321 ~d~~~~~~~~~~fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~-----~~-~~g  389 (475)
T PLN02336        321 ADCTKKTYPDNSFDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---FAEY-----IK-QRG  389 (475)
T ss_pred             cCcccCCCCCCCEEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---HHHH-----HH-hcC
Confidence            67777 5664  4999999999999875  68999999999999999999987654322211   1111     11 123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...++..++.++++++||+++++...
T Consensus       390 ~~~~~~~~~~~~l~~aGF~~i~~~d~  415 (475)
T PLN02336        390 YDLHDVQAYGQMLKDAGFDDVIAEDR  415 (475)
T ss_pred             CCCCCHHHHHHHHHHCCCeeeeeecc
Confidence            45678999999999999999876543

>PLN02244 tocopherol O-methyltransferase

Probab=98.89  E-value=2.2e-08  Score=72.29  Aligned_cols=101  Identities=14%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC-chhh-hhchhccchhcccC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPET-STVS-KRNSQLDVLMMTQN   76 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~-~~~~-~~~~~~~l~~~~~~   76 (115)
                      ||+.+ +++.  .|+|++..++||++|.  .++++++++.|+|||+++|.+......... .... .....++-..... 
T Consensus       175 ~D~~~~~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-  251 (340)
T PLN02244        175 ADALNQPFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAY-  251 (340)
T ss_pred             cCcccCCCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhc-
Confidence            57766 5664  3999999999999884  689999999999999999998754322111 0000 0000000000000 


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      .--...+.++|.++++++||..+++....
T Consensus       252 ~~p~~~s~~~~~~~l~~aGf~~v~~~d~s  280 (340)
T PLN02244        252 YLPAWCSTSDYVKLAESLGLQDIKTEDWS  280 (340)
T ss_pred             cCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence            00112478999999999999998876553

>TIGR00452 methyltransferase, putative

Probab=98.86  E-value=2.4e-08  Score=71.32  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS--TVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++..++||+++.  ...|++++++|+|||++++.+.+.+......  +..++.     .|.  + .-...|.+++.
T Consensus       189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-----k~~--n-v~flpS~~~L~  258 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-----KMK--N-VYFIPSVSALK  258 (314)
T ss_pred             cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-----hcc--c-cccCCCHHHHH
Confidence            4999999999999876  6899999999999999999887766442211  001111     010  0 11235889999


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      ++++++||+.+++...
T Consensus       259 ~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       259 NWLEKVGFENFRILDV  274 (314)
T ss_pred             HHHHHCCCeEEEEEec
Confidence            9999999999987654

Known examples to date are restricted to the proteobacteria.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.81  E-value=4.3e-08  Score=65.88  Aligned_cols=102  Identities=20%  Similarity=0.107  Sum_probs=81.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|+..+++|-.+-+.+..+++.+.+.|+|||.+++.-+...+..-.++   -...||...-...+....|..+++.++
T Consensus       103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~l  179 (204)
T PF06080_consen  103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEAL  179 (204)
T ss_pred             cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHH
Confidence            39999999999999999999999999999999999999987765422111   123355554443457788999999999


Q ss_pred             HHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           91 ATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      .+++||+..+.+.++.+.-++..+|
T Consensus       180 A~~~GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  180 AAAHGLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             HHHCCCccCcccccCCCCeEEEEeC
Confidence            9999999999999986665555554

The function of this family is unknown.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.75  E-value=8.2e-08  Score=65.09  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+ +.+. .|+|+...++|++++.  ..+++++++.|+|||++++.+...+......      .  .      ....
T Consensus        57 ~d~~~~~~~~~fD~I~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~--~------~~~~  120 (224)
T smart00828       57 RDSAKDPFPDTYDLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE------H--E------ETTS  120 (224)
T ss_pred             cccccCCCCCCCCEeehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc------c--c------cccc
Confidence            45544 3444 5999999999999874  7999999999999999999987543211100      0  0      0011


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ...+.++|.++++++||+.++...+.
T Consensus       121 ~~~s~~~~~~~l~~~Gf~~~~~~~~~  146 (224)
T smart00828      121 YLVTREEWAELLARNNLRVVEGVDAS  146 (224)
T ss_pred             ccCCHHHHHHHHHHCCCeEEEeEECc
Confidence            13578999999999999999877664

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.67  E-value=3.2e-07  Score=61.47  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=59.2

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+ +++. .|+|++..++|++++++..+++++++++|+|||++++.+.+..++...+      .  .        ..
T Consensus        85 ~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~--~--------~~  148 (197)
T PRK11207         85 VDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------V--G--------FP  148 (197)
T ss_pred             cChhhCCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------C--C--------CC
Confidence            45555 4444 4999999999999988899999999999999999888776554331100      0  0        01


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEE
Q 048196           80 KKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                      ...+.+|+.++++  ||+.+..
T Consensus       149 ~~~~~~el~~~~~--~~~~~~~  168 (197)
T PRK11207        149 FAFKEGELRRYYE--GWEMVKY  168 (197)
T ss_pred             CccCHHHHHHHhC--CCeEEEe
Confidence            2257789999996  8887665

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.67  E-value=1.3e-07  Score=65.53  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=54.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhc--hhccchh--cccCCCceeCCHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRN--SQLDVLM--MTQNPSGKKRTKHE   86 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~--~~~~l~~--~~~~~~g~~rt~~e   86 (115)
                      .|+|+++.++|+++|.  .+++++++++|+|||++++......+.+.........  ..+...+  ..........+.++
T Consensus        90 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  167 (255)
T PRK14103         90 TDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG  167 (255)
T ss_pred             ceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence            5999999999999875  6899999999999999998632211110000000000  0011000  00011233468999


Q ss_pred             HHHHHHhCCCCeeE
Q 048196           87 FLTLATGAGFSGTR  100 (115)
Q Consensus        87 ~~~ll~~aGf~~~~  100 (115)
                      +.++|+++||++..
T Consensus       168 ~~~~l~~aGf~v~~  181 (255)
T PRK14103        168 YAELLTDAGCKVDA  181 (255)
T ss_pred             HHHHHHhCCCeEEE
Confidence            99999999998543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.62  E-value=7.6e-08  Score=69.03  Aligned_cols=89  Identities=11%  Similarity=0.002  Sum_probs=59.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccC---CCceeCCHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQN---PSGKKRTKHEF   87 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~g~~rt~~e~   87 (115)
                      .|+|++..++||++|.  ..+|+++++.|+|||.++|........   .........-.+.-.+..   ...+.+|.+|+
T Consensus       199 FD~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL  273 (322)
T PLN02396        199 FDAVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWLPKGTHQWSSFVTPEEL  273 (322)
T ss_pred             CCEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHH
Confidence            4999999999999986  589999999999999999986532210   000000000000000100   01245799999


Q ss_pred             HHHHHhCCCCeeEEEEc
Q 048196           88 LTLATGAGFSGTRFEWF  104 (115)
Q Consensus        88 ~~ll~~aGf~~~~~~~~  104 (115)
                      .++|+++||+++++..+
T Consensus       274 ~~lL~~aGf~i~~~~G~  290 (322)
T PLN02396        274 SMILQRASVDVKEMAGF  290 (322)
T ss_pred             HHHHHHcCCeEEEEeee
Confidence            99999999999887543

>PRK08317 hypothetical protein; Provisional

Probab=98.61  E-value=3.1e-07  Score=62.17  Aligned_cols=97  Identities=18%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc-hhhhhchhccchhcccCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS-TVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~-~~~~~~~~~~l~~~~~~~   77 (115)
                      +|+.+ +++.  .|+|++.+++|++++.  ..+++++++.|+|||.+++.+.......... ...........  .. ..
T Consensus        76 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~  150 (241)
T PRK08317         76 GDADGLPFPDGSFDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WS-DH  150 (241)
T ss_pred             cccccCCCCCCCceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HH-hc
Confidence            45544 4443  4999999999999985  6789999999999999999885432211000 00000011111  10 01


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      .....+..+|.++++++||..+++..
T Consensus       151 ~~~~~~~~~~~~~l~~aGf~~~~~~~  176 (241)
T PRK08317        151 FADPWLGRRLPGLFREAGLTDIEVEP  176 (241)
T ss_pred             CCCCcHHHHHHHHHHHcCCCceeEEE
Confidence            22234567899999999999876544

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.56  E-value=3.6e-07  Score=63.25  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh--chhccc------
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR--NSQLDV------   70 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~--~~~~~l------   70 (115)
                      ||--+ |+|.  .|.|.+..-+.+|+|.  .+.|+++++.|||||++.+.|+-.-+...   ..++  +..++.      
T Consensus       166 ~dAE~LpFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~  240 (296)
T KOG1540|consen  166 GDAEDLPFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGE  240 (296)
T ss_pred             CCcccCCCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhH
Confidence            45555 6775  4999999999999995  79999999999999999999986555311   1111  111111      


Q ss_pred             ---------hhcccCCCceeCCHHHHHHHHHhCCCCeeE
Q 048196           71 ---------LMMTQNPSGKKRTKHEFLTLATGAGFSGTR  100 (115)
Q Consensus        71 ---------~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  100 (115)
                               ..|+.+ =-+-.+.+|+..+.++|||..+.
T Consensus       241 ~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  241 IIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence                     111110 01334788999999999999986

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.49  E-value=6.7e-07  Score=67.01  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..++|++++++..++++++++.|+|||++++.|..........      .      .  ......|+..+|.++
T Consensus       104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~~  169 (475)
T PLN02336        104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTKV  169 (475)
T ss_pred             EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHHH
Confidence            4999999999999999899999999999999999999998755432110      0      0  113344678899999


Q ss_pred             HHhCCCCeeE
Q 048196           91 ATGAGFSGTR  100 (115)
Q Consensus        91 l~~aGf~~~~  100 (115)
                      |.++||....
T Consensus       170 f~~~~~~~~~  179 (475)
T PLN02336        170 FKECHTRDED  179 (475)
T ss_pred             HHHheeccCC
Confidence            9999998763

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.48  E-value=1.2e-07  Score=55.31  Aligned_cols=44  Identities=20%  Similarity=0.420  Sum_probs=36.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      +|+.+ ++|.  .|+|++.+++|++  ++..++++++++.|+|||+++|
T Consensus        49 ~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   49 GDAEDLPFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SBTTSSSS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ehHHhCccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence            46666 6774  3999999999999  4568999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.47  E-value=3.4e-07  Score=63.51  Aligned_cols=95  Identities=11%  Similarity=0.011  Sum_probs=59.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc----hhhhhchhccchh-cccCCCceeCCHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS----TVSKRNSQLDVLM-MTQNPSGKKRTKH   85 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~----~~~~~~~~~~l~~-~~~~~~g~~rt~~   85 (115)
                      .|+|++..++|++++.  .++|+++.+.|+|||++++.........-..    ........+.... .... .....+.+
T Consensus       113 fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~  189 (255)
T PRK11036        113 VDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDPE  189 (255)
T ss_pred             CCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCHH
Confidence            4999999999999876  5899999999999999998765433110000    0000000000000 0000 12235789


Q ss_pred             HHHHHHHhCCCCeeEEEEcCCce
Q 048196           86 EFLTLATGAGFSGTRFEWFTCNL  108 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~~~~~  108 (115)
                      ++.++|+++||+++...-+.++.
T Consensus       190 ~l~~~l~~aGf~~~~~~gi~~~~  212 (255)
T PRK11036        190 QVYQWLEEAGWQIMGKTGVRVFH  212 (255)
T ss_pred             HHHHHHHHCCCeEeeeeeEEEEe
Confidence            99999999999998766554333

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.47  E-value=1.9e-06  Score=57.61  Aligned_cols=74  Identities=9%  Similarity=0.083  Sum_probs=54.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|+++.++|++++++...++++++++|+|||+++|.+....+....+        .        +.....+.+|+.++
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~--------~--------~~~~~~~~~el~~~  158 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH--------M--------PFSFTFKEDELRQY  158 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC--------C--------CcCccCCHHHHHHH
Confidence            5999999999999988889999999999999999888776543321110        0        01123578999999


Q ss_pred             HHhCCCCeeEEE
Q 048196           91 ATGAGFSGTRFE  102 (115)
Q Consensus        91 l~~aGf~~~~~~  102 (115)
                      |+  +|++....
T Consensus       159 f~--~~~~~~~~  168 (195)
T TIGR00477       159 YA--DWELLKYN  168 (195)
T ss_pred             hC--CCeEEEee
Confidence            95  58776654

Part of a tellurite-reducing operon tehA and tehB

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.47  E-value=1.3e-06  Score=59.14  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=66.9

Q ss_pred             CCCCC-CCCc-----ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCE-----EEEEeeecCCCCCCchhhhhchhcc
Q 048196            2 DDMFQ-NVPK-----GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGK-----VIVVESILPELPETSTVSKRNSQLD   69 (115)
Q Consensus         2 gd~~~-~~p~-----~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~-----lii~d~~~~~~~~~~~~~~~~~~~~   69 (115)
                      .||++ |+|.     .|+|.+|.||...|+ .+.-++|+++++-|+|+|.     |+|+   +|..              
T Consensus        90 qDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~--------------  152 (219)
T PF11968_consen   90 QDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLP--------------  152 (219)
T ss_pred             eccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCch--------------
Confidence            59999 8983     399999999999996 5589999999999999999     7763   3322              


Q ss_pred             chhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           70 VLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        70 l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                         ++  .|++--+.+.|.++++.-||..++.+...
T Consensus       153 ---Cv--~NSRy~~~~~l~~im~~LGf~~~~~~~~~  183 (219)
T PF11968_consen  153 ---CV--TNSRYMTEERLREIMESLGFTRVKYKKSK  183 (219)
T ss_pred             ---Hh--hcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence               11  37777788999999999999998876553

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.43  E-value=4.6e-07  Score=63.33  Aligned_cols=48  Identities=19%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+.+ +.|.  .|+|++++++|++++++..+++++++++|+|||.+++..
T Consensus       192 ~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      192 HNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             ccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            57777 3433  499999999999999999999999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.32  E-value=1.2e-06  Score=61.60  Aligned_cols=92  Identities=14%  Similarity=0.148  Sum_probs=62.8

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHH
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLT   89 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~   89 (115)
                      +.|.|+.-.++.|++.+.....++++.+.|+|||++++......+.............+.-.   .+++|...+.+++..
T Consensus       127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky---iFPgg~lps~~~~~~  203 (273)
T PF02353_consen  127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY---IFPGGYLPSLSEILR  203 (273)
T ss_dssp             S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH---TSTTS---BHHHHHH
T ss_pred             CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe---eCCCCCCCCHHHHHH
Confidence            45999999999999998889999999999999999999887776542110000000111111   247899999999999


Q ss_pred             HHHhCCCCeeEEEEc
Q 048196           90 LATGAGFSGTRFEWF  104 (115)
Q Consensus        90 ll~~aGf~~~~~~~~  104 (115)
                      .++++||++..+...
T Consensus       204 ~~~~~~l~v~~~~~~  218 (273)
T PF02353_consen  204 AAEDAGLEVEDVENL  218 (273)
T ss_dssp             HHHHTT-EEEEEEE-
T ss_pred             HHhcCCEEEEEEEEc
Confidence            999999998877655

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.31  E-value=5.1e-06  Score=58.99  Aligned_cols=83  Identities=17%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhchhccchhcccCCC-ceeCCHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS--TVSKRNSQLDVLMMTQNPS-GKKRTKHEF   87 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~-g~~rt~~e~   87 (115)
                      .|+|++--||.|..++  ...|+.++++|+|||.+++--.+++.+....  +..+++.      |   .| -...|.+.+
T Consensus       183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~------m---~nv~FiPs~~~L  251 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAK------M---RNVWFIPSVAAL  251 (315)
T ss_pred             cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccC------C---CceEEeCCHHHH
Confidence            3999999999999986  8999999999999999988555666543321  1111111      1   12 345689999


Q ss_pred             HHHHHhCCCCeeEEEEc
Q 048196           88 LTLATGAGFSGTRFEWF  104 (115)
Q Consensus        88 ~~ll~~aGf~~~~~~~~  104 (115)
                      ..|++++||+.++++.+
T Consensus       252 ~~wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  252 KNWLERAGFKDVRCVDV  268 (315)
T ss_pred             HHHHHHcCCceEEEecC
Confidence            99999999999998765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR03438 probable methyltransferase

Probab=98.30  E-value=1.1e-05  Score=57.35  Aligned_cols=46  Identities=15%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             CCCCCC--CCc-----c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQN--VPK-----G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~~--~p~-----~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      |||.+.  ++.     . .++++...+++++++++..+|++++++|+|||.++|
T Consensus       122 gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       122 ADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            688763  332     1 466677899999999999999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.25  E-value=4.6e-06  Score=57.35  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce---eCCHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK---KRTKHEFL   88 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~---~rt~~e~~   88 (115)
                      |.+.+-.+|...+.+.-...++++++.|+|||.|++-|+...+-..... . -...++-+..+ .++|.   -.+.++++
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF-~-~~~~i~~nfYV-RgDGT~~YfF~~eeL~  222 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF-K-KGQCISENFYV-RGDGTRAYFFTEEELD  222 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc-c-CCceeecceEE-ccCCceeeeccHHHHH
Confidence            9999999999999999999999999999999999999987665422110 0 11223333333 23443   24899999


Q ss_pred             HHHHhCCCCeeEE
Q 048196           89 TLATGAGFSGTRF  101 (115)
Q Consensus        89 ~ll~~aGf~~~~~  101 (115)
                      +||++|||..++.
T Consensus       223 ~~f~~agf~~~~~  235 (264)
T KOG2361|consen  223 ELFTKAGFEEVQL  235 (264)
T ss_pred             HHHHhcccchhcc
Confidence            9999999998753

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.21  E-value=3e-05  Score=50.98  Aligned_cols=85  Identities=20%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             CCCCCCCC-cccEEEeccccccCChHH-------------------HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchh
Q 048196            2 DDMFQNVP-KGDAIFMKWILHNWSDDH-------------------CLKLLKIYYKSIPEDGKVIVVESILPELPETSTV   61 (115)
Q Consensus         2 gd~~~~~p-~~D~v~~~~vlh~~~d~~-------------------~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~   61 (115)
                      +|.++..+ +.|++++...+|..+++.                   ..++++++.+.|+|||++++.+....        
T Consensus        73 ~d~~~~~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------  144 (179)
T TIGR00537        73 TDLFKGVRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------  144 (179)
T ss_pred             cccccccCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------
Confidence            56665333 459999998887666431                   35789999999999999999762211        


Q ss_pred             hhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           62 SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        62 ~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                                           ...++.++++++||....+...+-++--++++|
T Consensus       145 ---------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR00537       145 ---------------------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK  177 (179)
T ss_pred             ---------------------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence                                 136888999999999988888777776666654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.21  E-value=1.4e-05  Score=56.51  Aligned_cols=82  Identities=12%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             CCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            3 DMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         3 d~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      |+.+ +++. .|+|++..++|++++++...+++++++.|+|||.++++.....+....+        .        +...
T Consensus       175 D~~~~~~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~  238 (287)
T PRK12335        175 DINSASIQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSF  238 (287)
T ss_pred             chhcccccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCc
Confidence            4444 2343 4999999999999988899999999999999999888765543331110        0        1112


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEE
Q 048196           81 KRTKHEFLTLATGAGFSGTRFE  102 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~  102 (115)
                      ..+.+|+.++++  +|++++..
T Consensus       239 ~~~~~el~~~~~--~~~i~~~~  258 (287)
T PRK12335        239 TFKEGELKDYYQ--DWEIVKYN  258 (287)
T ss_pred             ccCHHHHHHHhC--CCEEEEEe
Confidence            256889999995  58877653

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.20  E-value=6.5e-06  Score=56.13  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=56.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhccc--CCCceeCCHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMTQ--NPSGKKRTKHEF   87 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~g~~rt~~e~   87 (115)
                      .|+|++++++++.++.  ..+|+++.+.|+|||++++.....  .... ..... ....-......  ....+..+.++|
T Consensus       115 fD~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (233)
T PRK05134        115 FDVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLNR--NLKS-YLLAIVGAEYVLRMLPKGTHDYKKFIKPSEL  189 (233)
T ss_pred             ccEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecCC--ChHH-HHHHHhhHHHHhhhcCcccCchhhcCCHHHH
Confidence            4999999999999875  578999999999999998865321  1100 00000 00000000000  011334588999


Q ss_pred             HHHHHhCCCCeeEEEE
Q 048196           88 LTLATGAGFSGTRFEW  103 (115)
Q Consensus        88 ~~ll~~aGf~~~~~~~  103 (115)
                      .++++++||++++...
T Consensus       190 ~~~l~~~Gf~~v~~~~  205 (233)
T PRK05134        190 AAWLRQAGLEVQDITG  205 (233)
T ss_pred             HHHHHHCCCeEeeeee
Confidence            9999999999987753

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.17  E-value=2.2e-06  Score=59.89  Aligned_cols=80  Identities=15%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             EEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196           13 AIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA   91 (115)
Q Consensus        13 ~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll   91 (115)
                      .+++..+||+.+| ++...+++.++++|+|||.|+|.....+..+..  ....   ..+.-.. ...+..||.+|+.++|
T Consensus       153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~--~~~~---~~~~~~~-~~~~~~Rs~~ei~~~f  226 (267)
T PF04672_consen  153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER--AEAL---EAVYAQA-GSPGRPRSREEIAAFF  226 (267)
T ss_dssp             EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH--HHHH---HHHHHHC-CS----B-HHHHHHCC
T ss_pred             eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH--HHHH---HHHHHcC-CCCceecCHHHHHHHc
Confidence            6888999999998 679999999999999999999998876543211  1111   1111111 2367889999999999


Q ss_pred             HhCCCCeeE
Q 048196           92 TGAGFSGTR  100 (115)
Q Consensus        92 ~~aGf~~~~  100 (115)
                      .  ||+.++
T Consensus       227 ~--g~elve  233 (267)
T PF04672_consen  227 D--GLELVE  233 (267)
T ss_dssp             T--TSEE-T
T ss_pred             C--CCccCC
Confidence            5  888764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.16  E-value=7.5e-06  Score=55.36  Aligned_cols=88  Identities=10%  Similarity=0.032  Sum_probs=56.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhccc-C-CCceeCCHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMTQ-N-PSGKKRTKHEF   87 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~~-~-~~g~~rt~~e~   87 (115)
                      .|++++.+++|+..+.  ..+|+++.+.|+|||.+++.....+..   ...... ...+....... . ......+..+|
T Consensus       113 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  187 (224)
T TIGR01983       113 FDVVTCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVGAEYILRIVPKGTHDWEKFIKPSEL  187 (224)
T ss_pred             ccEEEehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHH
Confidence            4999999999999876  589999999999999998865432110   000000 00000000000 0 01233478899


Q ss_pred             HHHHHhCCCCeeEEEE
Q 048196           88 LTLATGAGFSGTRFEW  103 (115)
Q Consensus        88 ~~ll~~aGf~~~~~~~  103 (115)
                      .++++++||+++++..
T Consensus       188 ~~~l~~~G~~i~~~~~  203 (224)
T TIGR01983       188 TSWLESAGLRVKDVKG  203 (224)
T ss_pred             HHHHHHcCCeeeeeee
Confidence            9999999999987764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.12  E-value=4.3e-06  Score=59.18  Aligned_cols=48  Identities=15%  Similarity=0.242  Sum_probs=41.4

Q ss_pred             CCCCC-CCC--c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVP--K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|.++ +.|  . -|+|++++++.+++++...+++++++++|+|||.|++-.
T Consensus       211 ~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        211 LNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             ccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            56777 444  2 399999999999999999999999999999999988844

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.12  E-value=5.6e-05  Score=51.35  Aligned_cols=80  Identities=11%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             CCCCC-CC---CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC-CchhhhhchhccchhcccC
Q 048196            2 DDMFQ-NV---PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPE-TSTVSKRNSQLDVLMMTQN   76 (115)
Q Consensus         2 gd~~~-~~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~-~~~~~~~~~~~~l~~~~~~   76 (115)
                      ||+++ +.   +..|.++-+.++|+++.+...+.++++.++|+|||++++.-...++... ++                 
T Consensus       101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gp-----------------  163 (213)
T TIGR03840       101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGP-----------------  163 (213)
T ss_pred             ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCc-----------------
Confidence            68887 32   2249999999999999999999999999999999998776655432211 11                 


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEE
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                        -...+.+|++++|.. +|.+..+
T Consensus       164 --p~~~~~~eL~~~f~~-~~~i~~~  185 (213)
T TIGR03840       164 --PFSVSPAEVEALYGG-HYEIELL  185 (213)
T ss_pred             --CCCCCHHHHHHHhcC-CceEEEE
Confidence              012578899999963 4555444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.06  E-value=1.5e-06  Score=55.64  Aligned_cols=88  Identities=19%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             CCCCC-C--CC-cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            2 DDMFQ-N--VP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~--~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      +|+.+ +  ++ ..|+|+...++|++++.  ..+++++++.|++||.+++.+......-... ...... +.........
T Consensus        61 ~d~~~l~~~~~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~  136 (152)
T PF13847_consen   61 GDIEDLPQELEEKFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQ-LEELMN-LYSEVWSMIY  136 (152)
T ss_dssp             SBTTCGCGCSSTTEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHH-HHHHHH-HHHHHHHHCC
T ss_pred             eehhccccccCCCeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHH-HHHHHH-HHHHHhhhhh
Confidence            56777 4  33 45999999999999986  5899999999999999999998832221111 100001 0111111111


Q ss_pred             CceeCCHHHHHHHHHhCC
Q 048196           78 SGKKRTKHEFLTLATGAG   95 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aG   95 (115)
                       ... +.++|..+|++||
T Consensus       137 -~~~-~~~~~~~~~~~ag  152 (152)
T PF13847_consen  137 -IGN-DKEEWKYILEEAG  152 (152)
T ss_dssp             -----CCCGHHHHHHHTT
T ss_pred             -ccc-CHHHHHHHHHhcC
Confidence             112 7789999999998

...

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.05  E-value=4.5e-05  Score=56.05  Aligned_cols=86  Identities=9%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|+...++++.+++....+++++++.|+|||++++.+...+......     ....+-  .. +++|...+.+++.+.
T Consensus       229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~  300 (383)
T PRK11705        229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQA  300 (383)
T ss_pred             CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHH
Confidence            5999999999999988888999999999999999999876555432111     011111  11 367778889998888


Q ss_pred             HHhCCCCeeEEEEcC
Q 048196           91 ATGAGFSGTRFEWFT  105 (115)
Q Consensus        91 l~~aGf~~~~~~~~~  105 (115)
                      ++ .||.+..+...+
T Consensus       301 ~~-~~~~v~d~~~~~  314 (383)
T PRK11705        301 SE-GLFVMEDWHNFG  314 (383)
T ss_pred             HH-CCcEEEEEecCh
Confidence            66 589887765543

>PRK05785 hypothetical protein; Provisional

Probab=98.04  E-value=3.3e-05  Score=52.83  Aligned_cols=109  Identities=7%  Similarity=-0.062  Sum_probs=65.3

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh--chhccchhcccC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR--NSQLDVLMMTQN   76 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~--~~~~~l~~~~~~   76 (115)
                      ||+.+ |++.  .|++++..++|+++|.  .+.|++++++|+|  .++|+|...++..-....-.+  ............
T Consensus        99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~  174 (226)
T PRK05785         99 GSFEALPFRDKSFDVVMSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAG  174 (226)
T ss_pred             echhhCCCCCCCEEEEEecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56666 6664  3999999999999875  6899999999999  355667654433210000000  000000000011


Q ss_pred             CCc-----------eeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           77 PSG-----------KKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        77 ~~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                      .+.           .-.+.+++.++++++| ..++..... |..+++.++|
T Consensus       175 ~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        175 AKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence            111           2347889999999974 666776665 5667777665

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.04  E-value=4.2e-06  Score=56.21  Aligned_cols=48  Identities=17%  Similarity=0.331  Sum_probs=35.6

Q ss_pred             CCCCC-CCC-c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVP-K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|.++ +.+ . .|+|+++|||-+++++...+++++++++|+|||.|++-.
T Consensus       125 ~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  125 HNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             --TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             cccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            45666 222 2 399999999999999999999999999999999999844

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.03  E-value=2.9e-05  Score=55.74  Aligned_cols=98  Identities=10%  Similarity=0.076  Sum_probs=54.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..++||++++...++++++.+ +.+| +++|..  .+.........+....+.-. .. .......+.++++++
T Consensus       213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~~~~~l~~~g~~~~g~-~~-~~r~y~~s~eel~~l  286 (315)
T PLN02585        213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTLYYDILKRIGELFPGP-SK-ATRAYLHAEADVERA  286 (315)
T ss_pred             cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcchHHHHHHHHHhhcCCC-Cc-CceeeeCCHHHHHHH
Confidence            499999999999999888888888875 4554 444422  22111000000000000000 00 001123479999999


Q ss_pred             HHhCCCCeeEEEEcCCce---EEEEEE
Q 048196           91 ATGAGFSGTRFEWFTCNL---WVRDFY  114 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~~~---~lie~~  114 (115)
                      |+++||++.+..-....+   .+.|++
T Consensus       287 L~~AGf~v~~~~~~~~~~y~~~l~~~~  313 (315)
T PLN02585        287 LKKAGWKVARREMTATQFYFSRLLEAV  313 (315)
T ss_pred             HHHCCCEEEEEEEeecceeHHhhhhhc
Confidence            999999987665444333   345543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.02  E-value=3.8e-05  Score=52.02  Aligned_cols=88  Identities=11%  Similarity=0.011  Sum_probs=55.4

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc--cCCCceeCCHHHH
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT--QNPSGKKRTKHEF   87 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~g~~rt~~e~   87 (115)
                      ..|++++..+++++++++..++++++.+.+++++.+.+    .+....   ... ...+.-....  .......++.+++
T Consensus       119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~----~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
T TIGR02021       119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF----APKTAW---LAF-LKMIGELFPGSSRATSAYLHPMTDL  190 (219)
T ss_pred             CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE----CCCchH---HHH-HHHHHhhCcCcccccceEEecHHHH
Confidence            35999999999999988888999999988876533332    111111   000 0001000000  0012345689999


Q ss_pred             HHHHHhCCCCeeEEEEcC
Q 048196           88 LTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        88 ~~ll~~aGf~~~~~~~~~  105 (115)
                      .++++++||+++......
T Consensus       191 ~~~l~~~Gf~v~~~~~~~  208 (219)
T TIGR02021       191 ERALGELGWKIVREGLVS  208 (219)
T ss_pred             HHHHHHcCceeeeeeccc
Confidence            999999999998876554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.01  E-value=2.3e-05  Score=53.11  Aligned_cols=85  Identities=13%  Similarity=0.033  Sum_probs=57.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|+...++|+.+|.  .++|+++++.|+|||.+++.++......   .   ......      ...
T Consensus        87 ~d~~~~~~~~~~fD~vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~~---~---~~~~~~------~~~  152 (240)
T TIGR02072        87 GDAEKLPLEDSSFDLIVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTLH---E---LRQSFG------QHG  152 (240)
T ss_pred             cchhhCCCCCCceeEEEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCHH---H---HHHHHH------Hhc
Confidence            45555 4443  4999999999988774  6899999999999999998764332211   0   000010      013


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                      ....+.++|.++++++ |....+
T Consensus       153 ~~~~~~~~~~~~l~~~-f~~~~~  174 (240)
T TIGR02072       153 LRYLSLDELKALLKNS-FELLTL  174 (240)
T ss_pred             cCCCCHHHHHHHHHHh-cCCcEE
Confidence            3446788999999988 886654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06922 hypothetical protein; Provisional

Probab=98.00  E-value=1e-05  Score=62.73  Aligned_cols=45  Identities=27%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             ccEEEeccccccC-----------ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196           11 GDAIFMKWILHNW-----------SDDHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus        11 ~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      .|+|+++.++|+|           ++++..++|++++++|+|||+++|.|.+.++.
T Consensus       488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~  543 (677)
T PRK06922        488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTED  543 (677)
T ss_pred             EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCc
Confidence            4999999999986           35678999999999999999999999766644

>PRK04266 fibrillarin; Provisional

Probab=98.00  E-value=5.4e-05  Score=51.90  Aligned_cols=77  Identities=12%  Similarity=0.010  Sum_probs=48.3

Q ss_pred             ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEE-eeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIVV-ESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii~-d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+++     |+.++. +...+|+++++.|+|||+++|. ..    .+.           |..     .... +..++..
T Consensus       142 ~D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~----~~~-----------d~~-----~~~~-~~~~~~~  195 (226)
T PRK04266        142 VDVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA----RSI-----------DVT-----KDPK-EIFKEEI  195 (226)
T ss_pred             CCEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec----ccc-----------cCc-----CCHH-HHHHHHH
Confidence            48776     555543 3456789999999999999994 22    100           000     0001 2224556


Q ss_pred             HHHHhCCCCeeEEEEcCCc---eEEEEE
Q 048196           89 TLATGAGFSGTRFEWFTCN---LWVRDF  113 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~~~~---~~lie~  113 (115)
                      ++++++||+.++.....+.   +..+.+
T Consensus       196 ~~l~~aGF~~i~~~~l~p~~~~h~~~v~  223 (226)
T PRK04266        196 RKLEEGGFEILEVVDLEPYHKDHAAVVA  223 (226)
T ss_pred             HHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence            9999999999998877533   554444

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.96  E-value=7e-06  Score=48.73  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=24.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKV   45 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~l   45 (115)
                      .|+|++.+++|++++  ...+|+++++.|+|||+|
T Consensus        67 fD~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   67 FDLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred             cceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence            599999999999944  579999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK06202 hypothetical protein; Provisional

Probab=97.90  E-value=3.9e-05  Score=52.43  Aligned_cols=87  Identities=20%  Similarity=0.133  Sum_probs=55.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccc-hhcccCCC-----ceeCC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDV-LMMTQNPS-----GKKRT   83 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~-----g~~rt   83 (115)
                      .|+|+++.++||++|++..++|+++++.++  |.+++.|...+..  . ..... ....-. .... ..+     -+-+|
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~--~-~~~~~~~~~~~~~~~~~-~~d~~~s~~~~~~  203 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL--A-YALFWAGTRLLSRSSFV-HTDGLLSVRRSYT  203 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH--H-HHHHHHHHHHhccCcee-eccchHHHHhhcC
Confidence            499999999999999888899999999987  5666666544321  0 00000 000000 0000 011     23568


Q ss_pred             HHHHHHHHHhCCCCeeEEEEc
Q 048196           84 KHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        84 ~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .+|+.+++++ ||++....+.
T Consensus       204 ~~el~~ll~~-Gf~~~~~~~~  223 (232)
T PRK06202        204 PAELAALAPQ-GWRVERQWPF  223 (232)
T ss_pred             HHHHHHHhhC-CCeEEeccce
Confidence            9999999999 9998765443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.90  E-value=2.3e-05  Score=47.22  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=37.7

Q ss_pred             CCC-CC-CCC-cccEEEecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDM-FQ-NVP-KGDAIFMKW-ILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~-~~-~~p-~~D~v~~~~-vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+ +. +.+ +.|+|++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus        59 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   59 GDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            566 33 333 359999999 6775554 678999999999999999999865

...

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.90  E-value=0.0002  Score=48.87  Aligned_cols=82  Identities=16%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             CCCCCCCC----cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhchhccchhcccC
Q 048196            2 DDMFQNVP----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP-ETSTVSKRNSQLDVLMMTQN   76 (115)
Q Consensus         2 gd~~~~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~-~~~~~~~~~~~~~l~~~~~~   76 (115)
                      ||+++..+    ..|.++-+.++|+++.+...+.++++.++|+|||+++++-...++.. .++                 
T Consensus       104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gP-----------------  166 (218)
T PRK13255        104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGP-----------------  166 (218)
T ss_pred             CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCC-----------------
Confidence            67887322    23999999999999999999999999999999998666544443221 111                 


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                        -...|.+|+.++|.. +|++..+..
T Consensus       167 --p~~~~~~el~~~~~~-~~~i~~~~~  190 (218)
T PRK13255        167 --PFSVSDEEVEALYAG-CFEIELLER  190 (218)
T ss_pred             --CCCCCHHHHHHHhcC-CceEEEeee
Confidence              013578999999953 266655443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.88  E-value=3.4e-05  Score=54.16  Aligned_cols=48  Identities=15%  Similarity=0.311  Sum_probs=41.9

Q ss_pred             CCCCCCC--Cc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNV--PK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~--p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|.+++.  ++ -|+|+++|||=+++.+...+++++.+++|+|||.|+|-.
T Consensus       191 ~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         191 HNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             cCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence            5777733  34 399999999999999999999999999999999999944

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.88  E-value=0.0001  Score=49.96  Aligned_cols=90  Identities=19%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA   91 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll   91 (115)
                      |+|+...+|.-..|  .++.|+++++.|+|||+++++|.+..+-..-+..  .+...+-.--. ...|=..|.+.| +.|
T Consensus       147 DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~-~~dGC~ltrd~~-e~L  220 (252)
T KOG4300|consen  147 DTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHL-ESDGCVLTRDTG-ELL  220 (252)
T ss_pred             eeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHHHH--HHHHhchhhhe-eccceEEehhHH-HHh
Confidence            99999999987776  4899999999999999999999988765432110  01111110011 124544566555 566


Q ss_pred             HhCCCCeeEEEEcCCc
Q 048196           92 TGAGFSGTRFEWFTCN  107 (115)
Q Consensus        92 ~~aGf~~~~~~~~~~~  107 (115)
                      ++|.|+..+.++.+.+
T Consensus       221 eda~f~~~~~kr~~~~  236 (252)
T KOG4300|consen  221 EDAEFSIDSCKRFNFG  236 (252)
T ss_pred             hhcccccchhhcccCC
Confidence            7799999988777533

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.87  E-value=2e-05  Score=52.83  Aligned_cols=81  Identities=12%  Similarity=0.088  Sum_probs=52.3

Q ss_pred             CCCCCCCc--ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            3 DMFQNVPK--GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         3 d~~~~~p~--~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      |+-+..|.  .|+|+++-|+|++++ ++...+++++.++|+|||.+++......      ..    .          .-|
T Consensus        97 dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------~c----~----------~wg  156 (201)
T PF05401_consen   97 DVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------NC----R----------RWG  156 (201)
T ss_dssp             -TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------HH----H----------HTT
T ss_pred             cCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------cc----c----------ccC
Confidence            33334554  399999999999986 6789999999999999999999775211      00    0          112


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .....+.+.++|++. |..++....
T Consensus       157 h~~ga~tv~~~~~~~-~~~~~~~~~  180 (201)
T PF05401_consen  157 HAAGAETVLEMLQEH-LTEVERVEC  180 (201)
T ss_dssp             -S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred             cccchHHHHHHHHHH-hhheeEEEE
Confidence            233567888888876 565555544

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.86  E-value=0.00021  Score=50.64  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=65.2

Q ss_pred             CcccEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC-----ceeC
Q 048196            9 PKGDAIFMKWILHNWSDDH-CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS-----GKKR   82 (115)
Q Consensus         9 p~~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----g~~r   82 (115)
                      |..++++.+-++-.++|.+ ....|+.+.+++.|||.+|..-.-..++     .+-.+..+  +  .. .+     -+.|
T Consensus       208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~L--t--sH-r~g~~WvMRrR  277 (311)
T PF12147_consen  208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARVL--T--SH-RDGKAWVMRRR  277 (311)
T ss_pred             CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHHH--h--cc-cCCCceEEEec
Confidence            3459999999999999966 5557999999999999997633222211     11111111  0  00 12     2679


Q ss_pred             CHHHHHHHHHhCCCCeeEEEEc-CCceEEEEEEC
Q 048196           83 TKHEFLTLATGAGFSGTRFEWF-TCNLWVRDFYK  115 (115)
Q Consensus        83 t~~e~~~ll~~aGf~~~~~~~~-~~~~~lie~~~  115 (115)
                      |..|..+|+++|||+.....-- .+.++|--|+|
T Consensus       278 sq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  278 SQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             CHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence            9999999999999997654332 36677776654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.86  E-value=0.00014  Score=50.40  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             CCCCCCCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhh---hhc--hhccchhcc
Q 048196            2 DDMFQNVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS---KRN--SQLDVLMMT   74 (115)
Q Consensus         2 gd~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~---~~~--~~~~l~~~~   74 (115)
                      +|+.+..+  +.|+++++.++|+.+|.  .+++++++++|+|||++++.   .++....+...   ...  ..+...+..
T Consensus        83 ~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~  157 (258)
T PRK01683         83 ADIASWQPPQALDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ---MPDNLDEPSHVLMREVAENGPWEQNLPD  157 (258)
T ss_pred             CchhccCCCCCccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE---CCCCCCCHHHHHHHHHHccCchHHHhcc
Confidence            45544223  35999999999998875  68999999999999999884   22221111000   000  001111110


Q ss_pred             c-CCCceeCCHHHHHHHHHhCCCCe
Q 048196           75 Q-NPSGKKRTKHEFLTLATGAGFSG   98 (115)
Q Consensus        75 ~-~~~g~~rt~~e~~~ll~~aGf~~   98 (115)
                      . .......+..++.+++.++|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~g~~v  182 (258)
T PRK01683        158 RGARRAPLPPPHAYYDALAPAACRV  182 (258)
T ss_pred             ccccCcCCCCHHHHHHHHHhCCCce
Confidence            0 00123357789999999999765

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.85  E-value=6.7e-05  Score=52.93  Aligned_cols=88  Identities=19%  Similarity=0.209  Sum_probs=70.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|-|+.--+++|+..+.-...++++++.|+|||++++.....++.+...    ...+..-   -.+++|..+|..++.+.
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~~~i~~---yiFPgG~lPs~~~i~~~  210 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FPDFIDK---YIFPGGELPSISEILEL  210 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----chHHHHH---hCCCCCcCCCHHHHHHH
Confidence            5999999999999999999999999999999999999988777654311    1111111   12589999999999999


Q ss_pred             HHhCCCCeeEEEEcC
Q 048196           91 ATGAGFSGTRFEWFT  105 (115)
Q Consensus        91 l~~aGf~~~~~~~~~  105 (115)
                      .+++||.+..+...+
T Consensus       211 ~~~~~~~v~~~~~~~  225 (283)
T COG2230         211 ASEAGFVVLDVESLR  225 (283)
T ss_pred             HHhcCcEEehHhhhc
Confidence            999999988765543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.84  E-value=0.00017  Score=48.84  Aligned_cols=89  Identities=11%  Similarity=0.088  Sum_probs=54.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|++++..++|++++++...+++++.+.++++ .++..   .+..+...........+.-  ..........+.++|.++
T Consensus       128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~~i~~---~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~  201 (230)
T PRK07580        128 FDTVVCLDVLIHYPQEDAARMLAHLASLTRGS-LIFTF---APYTPLLALLHWIGGLFPG--PSRTTRIYPHREKGIRRA  201 (230)
T ss_pred             cCEEEEcchhhcCCHHHHHHHHHHHHhhcCCe-EEEEE---CCccHHHHHHHHhccccCC--ccCCCCccccCHHHHHHH
Confidence            49999999999999999999999998866433 33332   1111100000000000000  000112344678999999


Q ss_pred             HHhCCCCeeEEEEcC
Q 048196           91 ATGAGFSGTRFEWFT  105 (115)
Q Consensus        91 l~~aGf~~~~~~~~~  105 (115)
                      ++++||++.++.+..
T Consensus       202 l~~~Gf~~~~~~~~~  216 (230)
T PRK07580        202 LAAAGFKVVRTERIS  216 (230)
T ss_pred             HHHCCCceEeeeecc
Confidence            999999999887764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.81  E-value=0.00011  Score=50.64  Aligned_cols=88  Identities=13%  Similarity=0.132  Sum_probs=57.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +++.  .|+|+.+.++|..+|.  .++|+++++.|+|||.+++.......-++   ........+-  .  ...
T Consensus        92 ~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e---l~~~~~~~~~--~--~~~  162 (251)
T PRK10258         92 GDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLPE---LHQAWQAVDE--R--PHA  162 (251)
T ss_pred             cCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchHH---HHHHHHHhcc--C--Ccc
Confidence            56655 5554  4999999999877764  68999999999999999997654432211   1110000110  0  012


Q ss_pred             ceeCCHHHHHHHHHhCCCCe
Q 048196           79 GKKRTKHEFLTLATGAGFSG   98 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~   98 (115)
                      ..-.+.++|.+++..+|+..
T Consensus       163 ~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        163 NRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             ccCCCHHHHHHHHHhCCcee
Confidence            33468899999999988764

>PLN03075 nicotianamine synthase; Provisional

Probab=97.73  E-value=5.3e-05  Score=53.85  Aligned_cols=45  Identities=13%  Similarity=0.273  Sum_probs=37.8

Q ss_pred             CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||..+..+   +.|+|++. ++|+|+.++..++|+++++.|+|||.+++
T Consensus       184 ~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl  231 (296)
T PLN03075        184 ADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLML  231 (296)
T ss_pred             CchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEE
Confidence            45555222   34999999 99999888899999999999999999988

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.70  E-value=7.6e-05  Score=49.98  Aligned_cols=80  Identities=10%  Similarity=0.008  Sum_probs=53.3

Q ss_pred             CCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            3 DMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         3 d~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      |+.+ .++. .|+|+...|+|+++.+...++++++.++++|||..++...+..++-..+        ..        ...
T Consensus        85 Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f  148 (192)
T PF03848_consen   85 DLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPF  148 (192)
T ss_dssp             BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S-
T ss_pred             cchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCc
Confidence            5555 4554 4999999999999999999999999999999999888666533221110        01        112


Q ss_pred             eCCHHHHHHHHHhCCCCeeE
Q 048196           81 KRTKHEFLTLATGAGFSGTR  100 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~  100 (115)
                      .....|+.+.+  +||++++
T Consensus       149 ~~~~~EL~~~y--~dW~il~  166 (192)
T PF03848_consen  149 LLKPGELREYY--ADWEILK  166 (192)
T ss_dssp             -B-TTHHHHHT--TTSEEEE
T ss_pred             ccCHHHHHHHh--CCCeEEE
Confidence            24567899998  4787765

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.54  E-value=4.1e-05  Score=45.65  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=33.5

Q ss_pred             CCCCC-CCC--cccEEEec-cccccCChHHHHHHHHHHHhhCCCCC
Q 048196            2 DDMFQ-NVP--KGDAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDG   43 (115)
Q Consensus         2 gd~~~-~~p--~~D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg   43 (115)
                      +|+.+ +++  +.|+|+++ .++|++++++..++++++.+.|+|||
T Consensus        56 ~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   56 ADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45545 333  24999995 55999999999999999999999987

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.53  E-value=0.00051  Score=46.58  Aligned_cols=84  Identities=12%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             CCCCC-CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPKG--DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      -|+-. |++..  |+++++-.|..-+   ....|+++.+.|+|||.|.|.|....          +              
T Consensus       111 cdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SR----------f--------------  163 (219)
T PF05148_consen  111 CDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSR----------F--------------  163 (219)
T ss_dssp             S-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------------
T ss_pred             ecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEeccc----------C--------------
Confidence            36655 66653  9999888885433   47899999999999999999884321          1              


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                         -..+++.+.++..||+...-......+.+++.+|
T Consensus       164 ---~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K  197 (219)
T PF05148_consen  164 ---ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK  197 (219)
T ss_dssp             ---S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred             ---cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence               1347889999999999987665567888888775

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.51  E-value=0.00055  Score=47.00  Aligned_cols=52  Identities=10%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             CCCCC-CC-C----cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196            2 DDMFQ-NV-P----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus         2 gd~~~-~~-p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      ||||+ +. +    ..|+|+=+.+++.++++...+..+++.+.|+|||+++++-.-.+
T Consensus       110 gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        110 ADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             ccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence            89999 42 2    24999999999999999999999999999999999999876444

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.47  E-value=0.00028  Score=48.64  Aligned_cols=86  Identities=14%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhh-hchhccchhcccCCCc-----eeCCH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSK-RNSQLDVLMMTQNPSG-----KKRTK   84 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~g-----~~rt~   84 (115)
                      .|+|++-.|++|.+|++  .++++|.+.+||||.+++........   +.... ....+=+. +  .+.|     +...+
T Consensus       125 FDvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~-~--vP~gTH~~~k~irp  196 (243)
T COG2227         125 FDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLR-I--VPKGTHDYRKFIKP  196 (243)
T ss_pred             ccEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHH-h--cCCcchhHHHhcCH
Confidence            49999999999999985  59999999999999999876552211   11000 00101111 1  2333     45578


Q ss_pred             HHHHHHHHhCCCCeeEEEEc
Q 048196           85 HEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        85 ~e~~~ll~~aGf~~~~~~~~  104 (115)
                      +|...++.++|+.......+
T Consensus       197 ~El~~~~~~~~~~~~~~~g~  216 (243)
T COG2227         197 AELIRWLLGANLKIIDRKGL  216 (243)
T ss_pred             HHHHHhcccCCceEEeecce
Confidence            89999999999988766544

>PTZ00146 fibrillarin; Provisional

Probab=97.37  E-value=0.0045  Score=44.07  Aligned_cols=79  Identities=11%  Similarity=-0.098  Sum_probs=47.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++...   .+ ++...++.++++.|+|||.++|.-.....+...                   .-.++-.+|. ++
T Consensus       203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~  258 (293)
T PTZ00146        203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QK  258 (293)
T ss_pred             CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HH
Confidence            599987663   12 345677788999999999999931111111000                   1111111455 88


Q ss_pred             HHhCCCCeeEEEEcCC---ceEEEEE
Q 048196           91 ATGAGFSGTRFEWFTC---NLWVRDF  113 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~---~~~lie~  113 (115)
                      |+++||+.++.+.+.+   .++++.+
T Consensus       259 L~~~GF~~~e~v~L~Py~~~h~~v~~  284 (293)
T PTZ00146        259 LKKEGLKPKEQLTLEPFERDHAVVIG  284 (293)
T ss_pred             HHHcCCceEEEEecCCccCCcEEEEE
Confidence            9999999998887753   4455443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.36  E-value=0.00076  Score=45.50  Aligned_cols=51  Identities=16%  Similarity=0.268  Sum_probs=41.2

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      ||++++.+.  .|+|++..++||+++++..++++++++.+  ++.++|.|...+.
T Consensus        95 ~d~~~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587        95 GSLFDPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             eeccCCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            566665553  49999999999999888999999999986  6688888875543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.36  E-value=0.00066  Score=46.35  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             CCCCC-CCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-CCchhhhhchhccchhcccC
Q 048196            2 DDMFQ-NVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP-ETSTVSKRNSQLDVLMMTQN   76 (115)
Q Consensus         2 gd~~~-~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~-~~~~~~~~~~~~~l~~~~~~   76 (115)
                      ||||+ +-..   .|+|+=+.+|+-++.+...+-.+++.+.|+|||+++++-...+... .+|+                
T Consensus       104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP----------------  167 (218)
T PF05724_consen  104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP----------------  167 (218)
T ss_dssp             S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----------------
T ss_pred             cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------------
Confidence            79999 3222   3999999999999999999999999999999999554443333221 1221                


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                         ..-+.+|+.++|. .+|++.....
T Consensus       168 ---f~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  168 ---FSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             -------HHHHHHHHT-TTEEEEEEEE
T ss_pred             ---CCCCHHHHHHHhc-CCcEEEEEec
Confidence               0135789999998 7888766543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.33  E-value=0.00026  Score=49.46  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=59.2

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc-----eeCCH
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG-----KKRTK   84 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-----~~rt~   84 (115)
                      ..|+|+++.|++|..|.  ..+++.+.+.|+|||+++|......-..--.     ...++=..+...+.|     +--++
T Consensus       158 ~fDaVvcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~-----~i~~~E~vl~ivp~Gth~~ekfi~p  230 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAG-----TIFLAEIVLRIVPKGTHTWEKFINP  230 (282)
T ss_pred             ccceeeeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhc-----cccHHHHHHHhcCCCCcCHHHcCCH
Confidence            35999999999999886  7999999999999999999775433221000     011111111111233     45689


Q ss_pred             HHHHHHHHhCCCCeeEEE
Q 048196           85 HEFLTLATGAGFSGTRFE  102 (115)
Q Consensus        85 ~e~~~ll~~aGf~~~~~~  102 (115)
                      +|..+++..+++.+..+.
T Consensus       231 ~e~~~~l~~~~~~v~~v~  248 (282)
T KOG1270|consen  231 EELTSILNANGAQVNDVV  248 (282)
T ss_pred             HHHHHHHHhcCcchhhhh
Confidence            999999999998887654

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.28  E-value=0.0029  Score=44.42  Aligned_cols=83  Identities=16%  Similarity=0.100  Sum_probs=59.3

Q ss_pred             CCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            3 DMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         3 d~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||-+ |++.  .|+++++..|..-+   ....++++++.|+|||.++|.|.-..          +               
T Consensus       218 Dm~~vPl~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv~SR----------f---------------  269 (325)
T KOG3045|consen  218 DMRNVPLEDESVDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVKSR----------F---------------  269 (325)
T ss_pred             cccCCcCccCcccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEehhhh----------c---------------
Confidence            6666 6664  49888776664322   46789999999999999999874211          1               


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                        -+..++.+-|...||.+....-....+.++|+.|
T Consensus       270 --~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  270 --SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             --ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence              1123588888999999877665567888888765

>PRK14968 putative methyltransferase; Provisional

Probab=97.16  E-value=0.012  Score=38.37  Aligned_cols=85  Identities=18%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             CCCCCCCCc--ccEEEeccccccCC-------------------hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWS-------------------DDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST   60 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~-------------------d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~   60 (115)
                      +|+.+++++  .|++++...+...+                   ......+++++.+.|+|||.+++...   ..     
T Consensus        80 ~d~~~~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~---~~-----  151 (188)
T PRK14968         80 SDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS---SL-----  151 (188)
T ss_pred             ccccccccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc---cc-----
Confidence            566665543  49988765433211                   12246789999999999999887531   00     


Q ss_pred             hhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC---CceEEEEEEC
Q 048196           61 VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT---CNLWVRDFYK  115 (115)
Q Consensus        61 ~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~---~~~~lie~~~  115 (115)
                                           ...+++.++++++||+...+....   ....+++++|
T Consensus       152 ---------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T PRK14968        152 ---------------------TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK  188 (188)
T ss_pred             ---------------------CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence                                 123578889999999887664442   3344555543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.14  E-value=0.00052  Score=47.93  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             CCc-ccEEEeccccccCC--hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCH
Q 048196            8 VPK-GDAIFMKWILHNWS--DDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTK   84 (115)
Q Consensus         8 ~p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~   84 (115)
                      +|+ +|++++..+|-...  .++-.+.++|+...|||||.|+++...-...     +.  .....+       ..-.-+.
T Consensus       155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-----Y~--vG~~~F-------~~l~l~e  220 (256)
T PF01234_consen  155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-----YM--VGGHKF-------PCLPLNE  220 (256)
T ss_dssp             S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-----EE--ETTEEE-------E---B-H
T ss_pred             CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-----EE--ECCEec-------ccccCCH
Confidence            454 79999999998655  4668999999999999999999987633211     00  000001       1112468


Q ss_pred             HHHHHHHHhCCCCeeEEEE
Q 048196           85 HEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        85 ~e~~~ll~~aGf~~~~~~~  103 (115)
                      +.+++-|+++||.+.+...
T Consensus       221 e~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  221 EFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             HHHHHHHHHTTEEEEEEEG
T ss_pred             HHHHHHHHHcCCEEEeccc
Confidence            8999999999999888764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.11  E-value=0.0028  Score=44.30  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC------CCC--CCchhhhhchhccchhcccCCCceeC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP------ELP--ETSTVSKRNSQLDVLMMTQNPSGKKR   82 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~------~~~--~~~~~~~~~~~~~l~~~~~~~~g~~r   82 (115)
                      .|+|.+.|+|..-.++  ..+|+.++++|+|+|++++.=. +|      ..+  ..++.+.    ++     ..+..-+-
T Consensus       152 fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAvV-lP~~pyVE~~~g~~~~P~e~----l~-----~~g~~~E~  219 (265)
T PF05219_consen  152 FDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAVV-LPFRPYVEFGGGKSNRPSEL----LP-----VKGATFEE  219 (265)
T ss_pred             eEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEEE-ecccccEEcCCCCCCCchhh----cC-----CCCCcHHH
Confidence            4999999999877665  8999999999999999988543 22      111  0011110    11     11111122


Q ss_pred             CHHHHHHHHHhCCCCeeEEEEcC
Q 048196           83 TKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        83 t~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ..+.+.+.|+.+||++.+....+
T Consensus       220 ~v~~l~~v~~p~GF~v~~~tr~P  242 (265)
T PF05219_consen  220 QVSSLVNVFEPAGFEVERWTRLP  242 (265)
T ss_pred             HHHHHHHHHHhcCCEEEEEeccC
Confidence            22344478899999999887664

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.11  E-value=0.004  Score=41.99  Aligned_cols=79  Identities=13%  Similarity=0.028  Sum_probs=54.2

Q ss_pred             ccEEEeccccccC-----ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHH
Q 048196           11 GDAIFMKWILHNW-----SDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKH   85 (115)
Q Consensus        11 ~D~v~~~~vlh~~-----~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~   85 (115)
                      .|+++.....|++     ....+.++-+.++++|||||.++|.|...........     +  +.       -++ ++.+
T Consensus       123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d-----t--~~-------~~r-i~~a  187 (238)
T COG4798         123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD-----T--IT-------LHR-IDPA  187 (238)
T ss_pred             ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh-----h--hh-------hcc-cChH
Confidence            3888776555543     3456889999999999999999999998776532210     0  00       111 3467


Q ss_pred             HHHHHHHhCCCCeeEEEEc
Q 048196           86 EFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~  104 (115)
                      -..+-.+.+||+..-...+
T Consensus       188 ~V~a~veaaGFkl~aeS~i  206 (238)
T COG4798         188 VVIAEVEAAGFKLEAESEI  206 (238)
T ss_pred             HHHHHHHhhcceeeeeehh
Confidence            7888888999998755444

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.10  E-value=0.0034  Score=41.46  Aligned_cols=68  Identities=18%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      ||...+++. .|++++....+++     ..+++.+.+.|+|||++++.....                            
T Consensus        88 ~d~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~----------------------------  134 (187)
T PRK08287         88 GEAPIELPGKADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL----------------------------  134 (187)
T ss_pred             cCchhhcCcCCCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH----------------------------
Confidence            343333443 5999987665433     468899999999999998843211                            


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEE
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                       -+.+++.++++++||+.++++.
T Consensus       135 -~~~~~~~~~l~~~g~~~~~~~~  156 (187)
T PRK08287        135 -ENLHSALAHLEKCGVSELDCVQ  156 (187)
T ss_pred             -hhHHHHHHHHHHCCCCcceEEE
Confidence             0135777888889988766543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.08  E-value=0.0035  Score=42.89  Aligned_cols=46  Identities=11%  Similarity=0.056  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ..+++++.+.|+|||.+++.-     .                    .     ...+++.++|+++||+.+++...
T Consensus       197 ~~~i~~~~~~L~~gG~~~~~~-----~--------------------~-----~~~~~~~~~l~~~gf~~v~~~~d  242 (251)
T TIGR03534       197 RRIIAQAPRLLKPGGWLLLEI-----G--------------------Y-----DQGEAVRALFEAAGFADVETRKD  242 (251)
T ss_pred             HHHHHHHHHhcccCCEEEEEE-----C--------------------c-----cHHHHHHHHHHhCCCCceEEEeC
Confidence            478899999999999988721     0                    0     12367899999999998877654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.91  E-value=0.0084  Score=42.26  Aligned_cols=87  Identities=14%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             CCCCCC--CCC--c-c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc
Q 048196            1 MDDMFQ--NVP--K-G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT   74 (115)
Q Consensus         1 ~gd~~~--~~p--~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~   74 (115)
                      +|||.+  +-+  + . |+|+.++.+.-  -+....-|..|...|||||..|-.-++.-....            ..  .
T Consensus       150 aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~------------~~--~  213 (270)
T PF07942_consen  150 AGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEP------------MS--I  213 (270)
T ss_pred             cCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCC------------CC--C
Confidence            589998  233  1 3 99998866632  234788999999999999976655444332211            00  0


Q ss_pred             cCCCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           75 QNPSGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      ....+-+.|.+|+.++.+..||+.++...
T Consensus       214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  214 PNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            01234677899999999999999986544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=96.70  E-value=0.0063  Score=40.44  Aligned_cols=88  Identities=13%  Similarity=0.009  Sum_probs=48.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc-hhh--h--hchhccchhcccCCCceeCCHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS-TVS--K--RNSQLDVLMMTQNPSGKKRTKH   85 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~-~~~--~--~~~~~~l~~~~~~~~g~~rt~~   85 (115)
                      .|+|++..++|+++|.  .++|+++.+.++   .+++.-+......... ...  .  ....+..... ..++.+..|.+
T Consensus        76 fD~Vi~~~~l~~~~d~--~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~  149 (194)
T TIGR02081        76 FDYVILSQTLQATRNP--EEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIA  149 (194)
T ss_pred             cCEEEEhhHhHcCcCH--HHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccCcHH
Confidence            4999999999999874  577888777644   4444211100000000 000  0  0000000000 01234567899


Q ss_pred             HHHHHHHhCCCCeeEEEEc
Q 048196           86 EFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~  104 (115)
                      ++.++++++||++++....
T Consensus       150 ~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       150 DFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             HHHHHHHHCCCEEEEEEEe
Confidence            9999999999999886554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.69  E-value=0.0053  Score=44.64  Aligned_cols=49  Identities=18%  Similarity=0.267  Sum_probs=38.2

Q ss_pred             CCCCCCCCc-ccEEEeccccccC---ChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNW---SDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      +|.++..+. .|+|++.-.+|+.   +.+...++++++.+.|+|||+++|+-.
T Consensus       252 ~D~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        252 SNVFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             cccccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            456654444 4999999999864   345578999999999999999998543

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.69  E-value=0.0033  Score=43.73  Aligned_cols=90  Identities=21%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             CCCC-CCCcccEEEecc----ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            3 DMFQ-NVPKGDAIFMKW----ILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         3 d~~~-~~p~~D~v~~~~----vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      ||++ ..|+.|++++-.    |=-+|.|+-..++++++++-|.|||.+++ |   | ++=.. +...+.  -..-+..+.
T Consensus       158 dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E---P-QpWks-Y~kaar--~~e~~~~ny  229 (288)
T KOG2899|consen  158 DFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E---P-QPWKS-YKKAAR--RSEKLAANY  229 (288)
T ss_pred             hhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c---C-CchHH-HHHHHH--HHHHhhcCc
Confidence            5665 456678887654    44489999999999999999999999976 2   1 11111 111011  111111122


Q ss_pred             CceeCCHHHHHHHHHhC--CCCeeE
Q 048196           78 SGKKRTKHEFLTLATGA--GFSGTR  100 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~a--Gf~~~~  100 (115)
                      .--...++.+..|+.+.  ||+.++
T Consensus       230 ~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  230 FKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             cceecCHHHHHhhhhhhhhheeeec
Confidence            33345788899999987  565543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.63  E-value=0.0068  Score=34.66  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=32.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|++++...++++ .+....+++++.+.|+|||.+++.
T Consensus        67 ~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          67 FDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            5999999999886 556799999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.50  E-value=0.001  Score=40.55  Aligned_cols=85  Identities=24%  Similarity=0.311  Sum_probs=43.7

Q ss_pred             cEEEecccc---c-cCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHH
Q 048196           12 DAIFMKWIL---H-NWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEF   87 (115)
Q Consensus        12 D~v~~~~vl---h-~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~   87 (115)
                      |+|++..|.   | +|.|+....+++++++.|+|||.+++ |+    ++-.. +.+. ....-.+.. +...-...++++
T Consensus         3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-Ep----Q~w~s-Y~~~-~~~~~~~~~-n~~~i~lrP~~F   74 (110)
T PF06859_consen    3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EP----QPWKS-YKKA-KRLSEEIRE-NYKSIKLRPDQF   74 (110)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------HHH-HHTT-TTS-HHHHH-HHHH----GGGH
T ss_pred             cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eC----CCcHH-HHHH-hhhhHHHHh-HHhceEEChHHH
Confidence            667666543   2 78899999999999999999999976 32    11000 0000 000000000 011222345678


Q ss_pred             HHHHHh--CCCCeeEEEEc
Q 048196           88 LTLATG--AGFSGTRFEWF  104 (115)
Q Consensus        88 ~~ll~~--aGf~~~~~~~~  104 (115)
                      ..+|.+  .||...+....
T Consensus        75 ~~~L~~~evGF~~~e~~~~   93 (110)
T PF06859_consen   75 EDYLLEPEVGFSSVEELGV   93 (110)
T ss_dssp             HHHHTSTTT---EEEEE--
T ss_pred             HHHHHhcccceEEEEEccc
Confidence            888887  59998875544

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.41  E-value=0.056  Score=37.58  Aligned_cols=57  Identities=12%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE-cCC
Q 048196           28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW-FTC  106 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~  106 (115)
                      ..++++++.+.|+|||.+++ +.    . .                        ...+++.+++++.||..+++.. ..+
T Consensus       217 ~~~~~~~~~~~Lk~gG~l~~-e~----g-~------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~  266 (275)
T PRK09328        217 YRRIIEQAPRYLKPGGWLLL-EI----G-Y------------------------DQGEAVRALLAAAGFADVETRKDLAG  266 (275)
T ss_pred             HHHHHHHHHHhcccCCEEEE-EE----C-c------------------------hHHHHHHHHHHhCCCceeEEecCCCC
Confidence            46788999999999999987 11    0 0                        1135688999999998766643 345


Q ss_pred             ceEEEEEE
Q 048196          107 NLWVRDFY  114 (115)
Q Consensus       107 ~~~lie~~  114 (115)
                      .-.++-++
T Consensus       267 ~~r~~~~~  274 (275)
T PRK09328        267 RDRVVLGR  274 (275)
T ss_pred             CceEEEEE
Confidence            55555444

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.41  E-value=0.049  Score=37.72  Aligned_cols=67  Identities=16%  Similarity=0.118  Sum_probs=46.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+++....     .+....+++++.+.|+|||++++......                             ..+++.+.
T Consensus       180 fD~Vvani~-----~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~  225 (250)
T PRK00517        180 ADVIVANIL-----ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEA  225 (250)
T ss_pred             cCEEEEcCc-----HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHH
Confidence            488875422     23356889999999999999998642211                             23678889


Q ss_pred             HHhCCCCeeEEEEcCCceEEE
Q 048196           91 ATGAGFSGTRFEWFTCNLWVR  111 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~~~~li  111 (115)
                      +++.||+..++...+.-.+++
T Consensus       226 l~~~Gf~~~~~~~~~~W~~~~  246 (250)
T PRK00517        226 YEEAGFTLDEVLERGEWVALV  246 (250)
T ss_pred             HHHCCCEEEEEEEeCCEEEEE
Confidence            999999998877665444443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.33  E-value=0.013  Score=43.24  Aligned_cols=48  Identities=13%  Similarity=0.272  Sum_probs=37.4

Q ss_pred             CCCCCCCCc--ccEEEeccccc---cCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK--GDAIFMKWILH---NWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh---~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|.++.++.  .|+|++.--+|   .++++.+.++++.+++.|+|||+++++-
T Consensus       288 ~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        288 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            466665543  59999975554   4667778899999999999999999973

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.0016  Score=42.27  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      +|+++..+|+-|+.-++-...++.|++-|+|||.|-|.
T Consensus        48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            59999999999999999999999999999999999884

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.13  E-value=0.016  Score=39.75  Aligned_cols=108  Identities=13%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             CCCCCCCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc--hhhhhch---hccchhcc
Q 048196            2 DDMFQNVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS--TVSKRNS---QLDVLMMT   74 (115)
Q Consensus         2 gd~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~--~~~~~~~---~~~l~~~~   74 (115)
                      ||.-+-.|  +.|+++...+||-.+|.  .++|.+....|.|||.|.+.   +++....+  ...+...   -+.-.+--
T Consensus        82 aDl~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~  156 (257)
T COG4106          82 ADLRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGG  156 (257)
T ss_pred             ccHhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCc
Confidence            45545345  35999999999999987  79999999999999999883   34332221  1111000   01111110


Q ss_pred             c-CCCceeCCHHHHHHHHHhCCCCeeEEE------EcCCceEEEEEEC
Q 048196           75 Q-NPSGKKRTKHEFLTLATGAGFSGTRFE------WFTCNLWVRDFYK  115 (115)
Q Consensus        75 ~-~~~g~~rt~~e~~~ll~~aGf~~~~~~------~~~~~~~lie~~~  115 (115)
                      . ...+..-+.+.|-++|...+-+ +.+.      ++.+..+|||.+|
T Consensus       157 ~~~~r~~v~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk  203 (257)
T COG4106         157 RGLTRAPLPSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK  203 (257)
T ss_pred             cccccCCCCCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence            0 0123345889999999877733 3332      3357778888765

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.058  Score=38.97  Aligned_cols=89  Identities=16%  Similarity=0.286  Sum_probs=62.2

Q ss_pred             CCCCCC--CCCc---c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc
Q 048196            1 MDDMFQ--NVPK---G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT   74 (115)
Q Consensus         1 ~gd~~~--~~p~---~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~   74 (115)
                      +|||.+  +.++   . |+|..++.+.  +......-|+.|.+.|+|||..+-.-+.+-.-...+         +.    
T Consensus       244 aGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~----  308 (369)
T KOG2798|consen  244 AGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH---------GV----  308 (369)
T ss_pred             ccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC---------CC----
Confidence            599998  4444   2 9999886663  234478889999999999999987766544321110         00    


Q ss_pred             cCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           75 QNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ....+-+.|.+++..+.+.-||++.+...+
T Consensus       309 ~~~~siEls~edl~~v~~~~GF~~~ke~~I  338 (369)
T KOG2798|consen  309 ENEMSIELSLEDLKRVASHRGFEVEKERGI  338 (369)
T ss_pred             cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence            012356788999999999999999876544

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.04  E-value=0.012  Score=42.66  Aligned_cols=39  Identities=18%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CcccEEEecccccc-C-ChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            9 PKGDAIFMKWILHN-W-SDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         9 p~~D~v~~~~vlh~-~-~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      |..|++-+..++|+ | +.+.++.+|+|+.+.|+|||.+|=
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            34699999999995 3 456699999999999999998864

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=95.88  E-value=0.017  Score=37.62  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             CCCCCCCC-c-ccEEEeccccccCCh---HHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVP-K-GDAIFMKWILHNWSD---DHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p-~-~D~v~~~~vlh~~~d---~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|.+++++ . .|+|++.--+|.-.+   +-..++++.+.+.|+|||+++++-
T Consensus        88 ~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen   88 SDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             SSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            57788666 3 499999877776655   347899999999999999997743

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=95.80  E-value=0.04  Score=37.28  Aligned_cols=41  Identities=7%  Similarity=-0.015  Sum_probs=30.4

Q ss_pred             ccEEEeccccccCChHH---------HHHHHHHHHhhCCCCCEEEEEeee
Q 048196           11 GDAIFMKWILHNWSDDH---------CLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      .|+|+...+.|...+..         ...+|+.+.+.|+|||.+++..+.
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~  167 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ  167 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            49999876665543321         256899999999999999996543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.61  E-value=0.06  Score=35.63  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=24.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++.. +|++     ..+++.+++.|+|||++++.
T Consensus       110 fD~I~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       110 FDVITSRA-LASL-----NVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccEEEehh-hhCH-----HHHHHHHHHhcCCCCEEEEE
Confidence            59988765 5543     35778889999999999875

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=95.38  E-value=0.04  Score=39.81  Aligned_cols=42  Identities=7%  Similarity=0.230  Sum_probs=35.5

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHh-hCCCCCEEEE-EeeecC
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYK-SIPEDGKVIV-VESILP   53 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~-aL~pgg~lii-~d~~~~   53 (115)
                      -++++.+.+.+++++++..+|+++++ .|+||+.++| +|.+.+
T Consensus       159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~  202 (319)
T TIGR03439       159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD  202 (319)
T ss_pred             EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            56667789999999999999999999 9999998888 555443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK14967 putative methyltransferase; Provisional

Probab=95.34  E-value=0.28  Score=33.28  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeec
Q 048196           28 CLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      ...+++++.+.|+|||+++++..-.
T Consensus       138 ~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        138 LDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4568889999999999999865443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.21  E-value=0.03  Score=33.84  Aligned_cols=33  Identities=12%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|++++....+     ...++++++++.|+|||++++.
T Consensus        89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence            59998876443     3458999999999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=94.95  E-value=0.029  Score=40.73  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             cEEEeccccccC--ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           12 DAIFMKWILHNW--SDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        12 D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      |+|-+...+|+.  +.+.+..+|+++.+.|+|||.+|..=
T Consensus       147 DvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  147 DVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             EEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999999999954  45668889999999999999998754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=94.81  E-value=0.039  Score=40.81  Aligned_cols=43  Identities=7%  Similarity=0.073  Sum_probs=38.7

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      |.+.++.+..-+++++..+..+.+.++++|||+++.-....+.
T Consensus       297 ~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  297 DRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             eEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            9999999999999999999999999999999999986655443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.45  E-value=0.075  Score=35.71  Aligned_cols=39  Identities=13%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||+.+.++   ..|+|++...++++++        ++.+.|+|||++++.
T Consensus       131 ~d~~~~~~~~~~fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~  172 (205)
T PRK13944        131 GDGKRGLEKHAPFDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCcccCCccCCCccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence            56666444   2499999998876663        466789999999874

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.41  E-value=0.042  Score=40.41  Aligned_cols=47  Identities=19%  Similarity=0.330  Sum_probs=37.1

Q ss_pred             CCCcccEEEeccccccCChHHHHH----HHHHHHhhCCCCCEEEEEeeecC
Q 048196            7 NVPKGDAIFMKWILHNWSDDHCLK----LLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus         7 ~~p~~D~v~~~~vlh~~~d~~~~~----iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      ++|.+|.|.+..++|.+-.+...+    .++++...+.|||.|+|+|.-.+
T Consensus       179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            466779999888888766555444    88999999999999999986544

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.24  E-value=0.37  Score=33.80  Aligned_cols=84  Identities=11%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhch--h--ccchhcccCCCceeCCHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-VSKRNS--Q--LDVLMMTQNPSGKKRTKHE   86 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~~~~~~--~--~~l~~~~~~~~g~~rt~~e   86 (115)
                      -++++--++.+++.++..++|+.+.+...||+.++ .|.+.+-...... ..+...  .  .+..-+   ..+  .+.++
T Consensus       160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~  233 (260)
T TIGR00027       160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEWRAGMRAPVYHAARGVDGSGL---VFG--IDRAD  233 (260)
T ss_pred             eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhHHHHHHHHHHHhhhccccccc---ccC--CChhh
Confidence            46677789999999999999999999887888775 5665441111100 000000  0  111111   112  35789


Q ss_pred             HHHHHHhCCCCeeEE
Q 048196           87 FLTLATGAGFSGTRF  101 (115)
Q Consensus        87 ~~~ll~~aGf~~~~~  101 (115)
                      +.++|++.||+....
T Consensus       234 ~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       234 VAEWLAERGWRASEH  248 (260)
T ss_pred             HHHHHHHCCCeeecC
Confidence            999999999988654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.20  E-value=0.1  Score=35.31  Aligned_cols=39  Identities=13%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||.++..+ .  .|+|++....++.+        +.+.+.|+|||++++.
T Consensus       134 gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        134 GDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence            67666433 2  49999988776554        3456689999999884

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.03  E-value=0.062  Score=38.17  Aligned_cols=48  Identities=17%  Similarity=0.193  Sum_probs=38.4

Q ss_pred             CCCC-CCCc--ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEEee
Q 048196            3 DMFQ-NVPK--GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         3 d~~~-~~p~--~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      |... |.+.  .|..+...++|||+-. ...++++++.+.|+|||...|.=.
T Consensus        93 d~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen   93 DALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            4555 4443  4999999999999964 478899999999999999777543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=93.85  E-value=0.095  Score=35.17  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=27.6

Q ss_pred             ccEEEeccccccC------ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNW------SDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~------~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|++++....+..      .......+|+++++.|+|||.+++..
T Consensus       112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            4988876544211      11124689999999999999999853

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=93.60  E-value=0.1  Score=35.40  Aligned_cols=52  Identities=15%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             CCCCCC-CC-----CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196            1 MDDMFQ-NV-----PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus         1 ~gd~~~-~~-----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      .|||++ +.     .+||+|++.+.+  |+++-..++ ++....||+|.++|-.....+..
T Consensus       107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  107 HGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKPFCPRR  164 (205)
T ss_dssp             CS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-SS-TT
T ss_pred             ccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCCcCCCC
Confidence            378888 32     347999999886  776655555 66667899999998776666654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=93.13  E-value=0.11  Score=36.37  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=27.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|..+ |++.  .|+|+....         ...++++++.|+|||+++++.
T Consensus       140 ~d~~~lp~~~~sfD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        140 ASSHRLPFADQSLDAIIRIYA---------PCKAEELARVVKPGGIVITVT  181 (272)
T ss_pred             eecccCCCcCCceeEEEEecC---------CCCHHHHHhhccCCCEEEEEe
Confidence            45555 5554  499986543         123578889999999999865

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=92.98  E-value=0.32  Score=35.05  Aligned_cols=47  Identities=13%  Similarity=0.108  Sum_probs=31.9

Q ss_pred             CCCCC-CCCc--ccEEEecccc-------ccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQ-NVPK--GDAIFMKWIL-------HNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vl-------h~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      +|+.+ +.+.  .|++++.--.       .+...+-..++|+++++.|+|||++++.
T Consensus       237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            57766 5543  4999884211       1122233578999999999999999884

This family is found exclusively in the Archaea.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.90  E-value=0.68  Score=33.19  Aligned_cols=88  Identities=14%  Similarity=-0.006  Sum_probs=53.6

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC---chhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPET---STVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      =+.++-.++-+++.++..++|.+|....+||+.++..-.........   ..........++...-  ..-......|++
T Consensus       172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~e~~  249 (297)
T COG3315         172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE--LVYFGDDPAEIE  249 (297)
T ss_pred             eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc--ceeccCCHHHHH
Confidence            36777789999999999999999999999998887654311111111   0000000000111000  011124578999


Q ss_pred             HHHHhCCCCeeEE
Q 048196           89 TLATGAGFSGTRF  101 (115)
Q Consensus        89 ~ll~~aGf~~~~~  101 (115)
                      .++.+.||.....
T Consensus       250 ~~l~~~g~~~~~~  262 (297)
T COG3315         250 TWLAERGWRSTLN  262 (297)
T ss_pred             HHHHhcCEEEEec
Confidence            9999999987765

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=92.85  E-value=0.22  Score=35.14  Aligned_cols=44  Identities=14%  Similarity=0.285  Sum_probs=37.0

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      ..|+|+++++|-.+++++...+++++.+.+.+  .|+|+|.-.+..
T Consensus       102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G  145 (274)
T PF09243_consen  102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG  145 (274)
T ss_pred             CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence            45999999999999998899999999887766  899988765543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=92.59  E-value=0.27  Score=32.98  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||..+.++.   .|+|++...++++        .+++.+.|+|||++++.-
T Consensus       133 ~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        133 GDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPV  175 (212)
T ss_pred             CCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence            566664432   4999998776655        345678999999998843

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=92.38  E-value=0.26  Score=32.88  Aligned_cols=33  Identities=9%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++..+ .     ....+++++++.|+|||++++.+
T Consensus       113 fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        113 FDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEEe
Confidence            599998652 1     24678999999999999999864

>PHA03411 putative methyltransferase; Provisional

Probab=92.33  E-value=0.93  Score=32.25  Aligned_cols=74  Identities=9%  Similarity=0.037  Sum_probs=44.8

Q ss_pred             CCCCCCC-Cc-ccEEEeccccccCChHHHH------------------HHHHHHHhhCCCCCEEEEEeeecCCCCCCchh
Q 048196            2 DDMFQNV-PK-GDAIFMKWILHNWSDDHCL------------------KLLKIYYKSIPEDGKVIVVESILPELPETSTV   61 (115)
Q Consensus         2 gd~~~~~-p~-~D~v~~~~vlh~~~d~~~~------------------~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~   61 (115)
                      +|+++.. .. .|+|++.--+++.+.++..                  +.++....-|+|+|.+++.   ....   +. 
T Consensus       116 ~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~---~~-  188 (279)
T PHA03411        116 SDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGR---PY-  188 (279)
T ss_pred             CchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eecc---cc-
Confidence            5777633 33 5999998877776554322                  3445555667777766554   1111   00 


Q ss_pred             hhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCe
Q 048196           62 SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSG   98 (115)
Q Consensus        62 ~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~   98 (115)
                            +          ...-+.+|++++++++||..
T Consensus       189 ------y----------~~sl~~~~y~~~l~~~g~~~  209 (279)
T PHA03411        189 ------Y----------DGTMKSNKYLKWSKQTGLVT  209 (279)
T ss_pred             ------c----------cccCCHHHHHHHHHhcCcEe
Confidence                  0          11135789999999999864

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=92.21  E-value=0.34  Score=34.74  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=17.8

Q ss_pred             HHHHHHHHHhhCCCCCEEEE
Q 048196           28 CLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii   47 (115)
                      ..++++++.+.|+|||++++
T Consensus       242 ~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        242 VRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             HHHHHHHHHHhcCCCCEEEE
Confidence            57889999999999999876

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=91.97  E-value=0.4  Score=33.95  Aligned_cols=20  Identities=20%  Similarity=0.351  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhhCCCCCEEEE
Q 048196           28 CLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii   47 (115)
                      ..++++++.+.|+|||++++
T Consensus       230 ~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       230 VRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             HHHHHHHHHHhcCCCCEEEE
Confidence            47889999999999998875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily

Probab=91.90  E-value=0.37  Score=32.05  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             cEEEeccccccCCh----------HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196           12 DAIFMKWILHNWSD----------DHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        12 D~v~~~~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      |+|.+.++|||++-          +...++++++++.|+|+..+|-.-+
T Consensus        52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt  100 (183)
T cd01842          52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA  100 (183)
T ss_pred             eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence            99999999999876          3366778888888888866655443

SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=91.74  E-value=0.51  Score=31.61  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            7 NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         7 ~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ++|+.|++++.---      ....+|+.+.+.|+|||+|++.-.
T Consensus        99 ~~~~~daiFIGGg~------~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242          99 DLPSPDAIFIGGGG------NIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             CCCCCCEEEECCCC------CHHHHHHHHHHHcCcCCeEEEEee
Confidence            34456888887652      246899999999999999988543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=91.61  E-value=0.26  Score=32.48  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=26.9

Q ss_pred             ccEEEeccccc---cCC------hHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILH---NWS------DDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh---~~~------d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|+.....|   .|+      .+...++++++++.|+|||++++.
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            49999754322   121      122468999999999999999985

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=91.48  E-value=0.61  Score=33.51  Aligned_cols=49  Identities=12%  Similarity=0.211  Sum_probs=37.3

Q ss_pred             CCCCCCCCc-ccEEEeccccccCC---hHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWS---DDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~---d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|.++++.. .|+|++.==+|.=-   +.-+.++++.+.+.|++||.|.|+-.
T Consensus       215 s~~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         215 SNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ecccccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            456665553 69999998888433   33456999999999999999999654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=91.08  E-value=0.78  Score=32.38  Aligned_cols=46  Identities=9%  Similarity=0.154  Sum_probs=31.5

Q ss_pred             CCCCCCCCc--ccEEEec-------------cccccCCh----------HHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQNVPK--GDAIFMK-------------WILHNWSD----------DHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~-------------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||++++++.  .|++++.             .++++-|.          +...++++++.+.|+|||.+++
T Consensus       172 ~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       172 SNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             CchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            677776653  4888874             23333332          2467889999999999998755

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=90.80  E-value=0.33  Score=33.41  Aligned_cols=82  Identities=22%  Similarity=0.337  Sum_probs=49.3

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCC-CCEEEEEeeecCCC------CCCchhhhhchhccchhcccCCCceeCC-
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPE-DGKVIVVESILPEL------PETSTVSKRNSQLDVLMMTQNPSGKKRT-   83 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p-gg~lii~d~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~g~~rt-   83 (115)
                      |+|++.++|.---++  -++|.-++.+|+| +|++|+.= ++|-.      ..+. ..+    .| +.+  ..+|+.+. 
T Consensus       171 dli~clNlLDRc~~p--~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~-~~r----Pd-n~L--e~~Gr~~ee  239 (288)
T KOG3987|consen  171 DLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGL-PLR----PD-NLL--ENNGRSFEE  239 (288)
T ss_pred             ehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCC-cCC----ch-HHH--HhcCccHHH
Confidence            888888888655543  7999999999999 78887643 22211      1110 001    11 111  12565332 


Q ss_pred             -HHHHHHHHHhCCCCeeEEEEc
Q 048196           84 -KHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        84 -~~e~~~ll~~aGf~~~~~~~~  104 (115)
                       .+.+-++|+.+||.+....+.
T Consensus       240 ~v~~~~e~lr~~g~~veawTrl  261 (288)
T KOG3987|consen  240 EVARFMELLRNCGYRVEAWTRL  261 (288)
T ss_pred             HHHHHHHHHHhcCchhhhhhcC
Confidence             224678899999988765444

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=90.61  E-value=0.5  Score=31.43  Aligned_cols=32  Identities=16%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      .|++++..     +..+...+++.+.+.|+|||++++
T Consensus       112 ~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        112 FDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence            59988743     223457899999999999999986

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=90.57  E-value=0.45  Score=33.36  Aligned_cols=46  Identities=20%  Similarity=0.347  Sum_probs=33.1

Q ss_pred             CCCCCC-CCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196            2 DDMFQN-VPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus         2 gd~~~~-~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      ||..+. .+. .|++++     |++|+  -..+.++.++|+|||.+++.-+..++
T Consensus       153 ~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~veQ  200 (256)
T COG2519         153 GDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVEQ  200 (256)
T ss_pred             ccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence            455552 233 476553     77876  79999999999999999997665553

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=90.37  E-value=0.66  Score=31.29  Aligned_cols=39  Identities=15%  Similarity=0.125  Sum_probs=26.9

Q ss_pred             CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||..+..+   ..|+|++....++.+        +.+.+.|+|||++++.
T Consensus       135 ~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       135 GDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP  176 (215)
T ss_pred             CCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence            56655333   249999887665443        4567789999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=90.23  E-value=0.73  Score=34.48  Aligned_cols=45  Identities=11%  Similarity=0.152  Sum_probs=33.5

Q ss_pred             ccEEEe------ccccccCChH--------------HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196           11 GDAIFM------KWILHNWSDD--------------HCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus        11 ~D~v~~------~~vlh~~~d~--------------~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      .|.|++      ..+++..++-              ...++|+++.+.|+|||++++..+-....
T Consensus       310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~  374 (426)
T TIGR00563       310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE  374 (426)
T ss_pred             cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence            499985      2456655541              14789999999999999999998866543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00417 speE spermidine synthase

Probab=90.06  E-value=0.58  Score=32.81  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=27.3

Q ss_pred             ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++...-+.-+...  ..+.++++++.|+|||.+++.
T Consensus       146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            49988765433222222  468899999999999999885

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=89.28  E-value=6.5  Score=30.32  Aligned_cols=20  Identities=15%  Similarity=0.275  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhhCCCCCEEEE
Q 048196           28 CLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii   47 (115)
                      ..++++++.+.|+|||.+++
T Consensus       248 ~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        248 YFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             HHHHHHHHHHhccCCCEEEE
Confidence            45688888999999999865

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=89.21  E-value=0.44  Score=33.77  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=27.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++....     +....+++++++.|+|||.+++...
T Consensus       226 fDlVvan~~~-----~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       226 ADVIVANILA-----EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             ceEEEEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            4999875432     2346899999999999999998654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=88.43  E-value=0.43  Score=35.22  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=57.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.. +.++  .|.+....+..+.++.  .++++++++.++|||..++.|.+....-.++..    ...++..-...+.
T Consensus       167 ~~~~~~~fedn~fd~v~~ld~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~----~~~~i~~~i~~gd  240 (364)
T KOG1269|consen  167 ADFGKMPFEDNTFDGVRFLEVVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS----EHVDILLEIEGGD  240 (364)
T ss_pred             hhhhcCCCCccccCcEEEEeecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhhccCCCc----ccccccCceeccc
Confidence            45666 4554  4999888888889885  799999999999999999999875543222110    1112111110000


Q ss_pred             --ceeCCHHHHHHHHHhCCCCeeE
Q 048196           79 --GKKRTKHEFLTLATGAGFSGTR  100 (115)
Q Consensus        79 --g~~rt~~e~~~ll~~aGf~~~~  100 (115)
                        ...........++...||....
T Consensus       241 ~~~~~~~~~d~~~~~~~~~~~~~~  264 (364)
T KOG1269|consen  241 ALPAETFNTDVFDLLKSFGFEHLK  264 (364)
T ss_pred             cccceeccccHHHHHhhccchhhh
Confidence              1233445666777777777655

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=88.36  E-value=0.47  Score=33.17  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=30.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCC-EEEEEeee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDG-KVIVVESI   51 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg-~lii~d~~   51 (115)
                      .|+|+...++|-++-   .+..+.+++.|++.| .+.+.-..
T Consensus       101 VDlI~~Aqa~HWFdl---e~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  101 VDLITAAQAVHWFDL---ERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             eeeehhhhhHHhhch---HHHHHHHHHHcCCCCCEEEEEEcc
Confidence            499999999998876   488999999998866 55554433

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=88.33  E-value=2.8  Score=25.10  Aligned_cols=84  Identities=13%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc------eeCCHHHHHHHHH
Q 048196           19 ILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG------KKRTKHEFLTLAT   92 (115)
Q Consensus        19 vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g------~~rt~~e~~~ll~   92 (115)
                      +|=|++.++..++|+++.. +. .+++++.  ..|..+   .   +.....+.-+  ++++      ...+.+++.+.++
T Consensus         4 vLIHYp~~d~~~~l~~La~-~t-~~~~ifT--fAP~T~---~---L~~m~~iG~l--FP~~dRsp~i~~~~e~~l~~~l~   71 (97)
T PF07109_consen    4 VLIHYPAEDAAQMLAHLAS-RT-RGSLIFT--FAPRTP---L---LALMHAIGKL--FPRPDRSPRIYPHREEDLRRALA   71 (97)
T ss_pred             eEeccCHHHHHHHHHHHHH-hc-cCcEEEE--ECCCCH---H---HHHHHHHhcc--CCCCCCCCcEEEeCHHHHHHHHH
Confidence            4557888899999998876 23 4455441  333221   1   1111111111  2222      2346789999999


Q ss_pred             hCCCCeeEEEEcCCce---EEEEEE
Q 048196           93 GAGFSGTRFEWFTCNL---WVRDFY  114 (115)
Q Consensus        93 ~aGf~~~~~~~~~~~~---~lie~~  114 (115)
                      ++||++.+...+...+   -++|++
T Consensus        72 ~~g~~~~r~~ris~gFY~S~llE~~   96 (97)
T PF07109_consen   72 AAGWRIGRTERISSGFYISQLLEAV   96 (97)
T ss_pred             hCCCeeeecccccCcChHHHHhhcc
Confidence            9999999888876443   245544

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>PRK00811 spermidine synthase; Provisional

Probab=87.43  E-value=1.6  Score=30.94  Aligned_cols=38  Identities=13%  Similarity=0.089  Sum_probs=26.2

Q ss_pred             ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++-..-+.-+...  ..++++.+++.|+|||.+++.
T Consensus       151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            49998754333222221  368899999999999998864

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=87.22  E-value=7.1  Score=26.35  Aligned_cols=87  Identities=13%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             CCc-c-cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC---------CCchhhhhc-hhccchhccc
Q 048196            8 VPK-G-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP---------ETSTVSKRN-SQLDVLMMTQ   75 (115)
Q Consensus         8 ~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~---------~~~~~~~~~-~~~~l~~~~~   75 (115)
                      .|. . |.|+++.+|.....+  .++|+++.+.   |.+.+|.=+...--+         ..|....+. .++      .
T Consensus        71 f~d~sFD~VIlsqtLQ~~~~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY------d  139 (193)
T PF07021_consen   71 FPDQSFDYVILSQTLQAVRRP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY------D  139 (193)
T ss_pred             CCCCCccEEehHhHHHhHhHH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc------C
Confidence            453 3 999999999999875  5777776554   667766433221000         000000000 111      2


Q ss_pred             CCCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           76 NPSGKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        76 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ++|=+.-|..+++++.++.|+++.+...+.
T Consensus       140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  140 TPNIHLCTIKDFEDLCRELGIRIEERVFLD  169 (193)
T ss_pred             CCCcccccHHHHHHHHHHCCCEEEEEEEEc
Confidence            456677799999999999999999887764

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.12  E-value=2.6  Score=29.60  Aligned_cols=78  Identities=15%  Similarity=0.080  Sum_probs=55.5

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc-eeCCHHHHH
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG-KKRTKHEFL   88 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-~~rt~~e~~   88 (115)
                      ..|+|....||-++.+-  ..++.-+...|+|||-+...-.-.++...             .++  .+.- -.++..-++
T Consensus       188 r~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------------f~l--~ps~RyAH~~~YVr  250 (287)
T COG4976         188 RFDLIVAADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVETLPDDGG-------------FVL--GPSQRYAHSESYVR  250 (287)
T ss_pred             cccchhhhhHHHhhcch--hhHHHHHHHhcCCCceEEEEecccCCCCC-------------eec--chhhhhccchHHHH
Confidence            36999999999999874  58888899999999998874333333211             011  0111 124677889


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      ++++..||+++++.++
T Consensus       251 ~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         251 ALLAASGLEVIAIEDT  266 (287)
T ss_pred             HHHHhcCceEEEeecc
Confidence            9999999999988766

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=87.10  E-value=2.1  Score=32.26  Aligned_cols=26  Identities=12%  Similarity=0.137  Sum_probs=22.2

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      .++|+++.+.|+|||+++...+....
T Consensus       357 ~~iL~~a~~~lkpgG~lvystcs~~~  382 (445)
T PRK14904        357 AELLDHAASLLKPGGVLVYATCSIEP  382 (445)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            47999999999999999998866543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=86.65  E-value=5.1  Score=28.19  Aligned_cols=55  Identities=11%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ..++.+++++.|+|||+++=  .+ .++ ...     ....|             -+....+.|+++||..++....
T Consensus       224 seefY~El~RiLkrgGrlFH--Yv-G~P-g~r-----yrG~d-------------~~~gVa~RLr~vGF~~v~~~~~  278 (287)
T COG2521         224 SEEFYRELYRILKRGGRLFH--YV-GNP-GKR-----YRGLD-------------LPKGVAERLRRVGFEVVKKVRE  278 (287)
T ss_pred             HHHHHHHHHHHcCcCCcEEE--Ee-CCC-Ccc-----cccCC-------------hhHHHHHHHHhcCceeeeeehh
Confidence            66788999999999999863  22 211 110     01111             1468889999999998776544

>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins

Probab=86.65  E-value=1.9  Score=26.91  Aligned_cols=33  Identities=21%  Similarity=0.117  Sum_probs=25.7

Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEE
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWV  110 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~l  110 (115)
                      .+..+|.+++.+++++|||++.+...-+ +.+++
T Consensus        92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l  125 (127)
T PF10017_consen   92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL  125 (127)
T ss_pred             EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence            4567899999999999999998876554 33444

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=85.93  E-value=2.1  Score=25.46  Aligned_cols=41  Identities=10%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      .|++ .....+++.+  ....++++.+.++|+|.+++.+.....
T Consensus       120 ~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         120 FDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             eeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            3888 5544444444  689999999999999999998876554

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=85.82  E-value=4.9  Score=28.17  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC--
Q 048196           28 CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT--  105 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~--  105 (115)
                      -..+++.+.+.|+|||++.++-   +..                           ...||.+++++.+|...++..+.  
T Consensus       149 le~~i~~a~~~lk~~G~l~~V~---r~e---------------------------rl~ei~~~l~~~~~~~k~i~~V~p~  198 (248)
T COG4123         149 LEDLIRAAAKLLKPGGRLAFVH---RPE---------------------------RLAEIIELLKSYNLEPKRIQFVYPK  198 (248)
T ss_pred             HHHHHHHHHHHccCCCEEEEEe---cHH---------------------------HHHHHHHHHHhcCCCceEEEEecCC
Confidence            4678888999999999998742   221                           12588889998898887776552  


Q ss_pred             ----CceEEEEEEC
Q 048196          106 ----CNLWVRDFYK  115 (115)
Q Consensus       106 ----~~~~lie~~~  115 (115)
                          ...-|+|+.|
T Consensus       199 ~~k~A~~vLv~~~k  212 (248)
T COG4123         199 IGKAANRVLVEAIK  212 (248)
T ss_pred             CCCcceEEEEEEec
Confidence                3556777765

>PRK07402 precorrin-6B methylase; Provisional

Probab=85.63  E-value=1.3  Score=29.36  Aligned_cols=24  Identities=13%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEee
Q 048196           27 HCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        27 ~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ....+++++.+.|+|||++++...
T Consensus       120 ~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        120 PIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEee
Confidence            357899999999999999998764

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=85.55  E-value=0.84  Score=27.21  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=27.2

Q ss_pred             ccEEEeccccccCC-h-----HHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWS-D-----DHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~-d-----~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++.--.+... +     .....+++++.+.|+|||.++++
T Consensus        71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            49999986665432 1     12468899999999999999875

...

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=85.20  E-value=1.2  Score=29.58  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=18.4

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 048196           29 LKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ..+++.+++.|+|||.+++..
T Consensus       112 ~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091       112 PHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             HHHHHHHHHHhCCCCEEEEEe
Confidence            578999999999999998754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=84.34  E-value=3.9  Score=29.79  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=48.7

Q ss_pred             CCCCCCC-CCcc--cEEEeccccccCCh-------------------------HHHHH------------HHHHHHhhCC
Q 048196            1 MDDMFQN-VPKG--DAIFMKWILHNWSD-------------------------DHCLK------------LLKIYYKSIP   40 (115)
Q Consensus         1 ~gd~~~~-~p~~--D~v~~~~vlh~~~d-------------------------~~~~~------------iL~~~~~aL~   40 (115)
                      +|.|+.. +|..  |+++.++.||-++.                         +...+            +|+.=.+=|+
T Consensus        95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv  174 (334)
T PF03492_consen   95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV  174 (334)
T ss_dssp             ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence            4789984 6753  99999999993331                         12222            2222223488


Q ss_pred             CCCEEEEEeeecCCCCCCc-----hhhhhchhccchhcccCCCc--------------eeCCHHHHHHHHHhCC-CCeeE
Q 048196           41 EDGKVIVVESILPELPETS-----TVSKRNSQLDVLMMTQNPSG--------------KKRTKHEFLTLATGAG-FSGTR  100 (115)
Q Consensus        41 pgg~lii~d~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~g--------------~~rt~~e~~~ll~~aG-f~~~~  100 (115)
                      |||++++.=...++.....     ....+.  ..+.-|+  ..|              -.+|.+|+++.+++.| |++.+
T Consensus       175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~--~~l~dMv--~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~  250 (334)
T PF03492_consen  175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLA--DALRDMV--AEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK  250 (334)
T ss_dssp             EEEEEEEEEEE-STSSTTSTTCCCHHHHHH--HHHHHHH--HTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred             cCcEEEEEEeeccccccccCCcchHHHHHH--HHHHHHH--HcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence            9999999887666521110     011110  0111111  122              3579999999999877 65544


Q ss_pred             E
Q 048196          101 F  101 (115)
Q Consensus       101 ~  101 (115)
                      +
T Consensus       251 l  251 (334)
T PF03492_consen  251 L  251 (334)
T ss_dssp             E
T ss_pred             E
Confidence            3

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=84.13  E-value=6.7  Score=25.93  Aligned_cols=25  Identities=8%  Similarity=0.057  Sum_probs=20.2

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .+.++++++.|||||.+++.=++-.
T Consensus        91 l~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   91 LRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             HHHHHHHHHhhccCCeEEEEeecCC
Confidence            5778889999999999999655543

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=83.88  E-value=1.9  Score=32.15  Aligned_cols=42  Identities=14%  Similarity=0.350  Sum_probs=27.8

Q ss_pred             CCCc--ccEEEeccccccCChHH-----HHHHHHHHHhhCCCCCEEEEEe
Q 048196            7 NVPK--GDAIFMKWILHNWSDDH-----CLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         7 ~~p~--~D~v~~~~vlh~~~d~~-----~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .+|.  .|.|++..-. -|+...     ...+|+.+++.|+|||.+.+.-
T Consensus       187 ~~~~~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        187 LLPSNSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             hCCCCceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            3454  3888764322 243221     2578999999999999998843

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=83.78  E-value=1.3  Score=31.98  Aligned_cols=30  Identities=13%  Similarity=0.096  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196           26 DHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus        26 ~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      ++..+.|..+.+.|+|||||.|+-+..-++
T Consensus       221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLED  250 (314)
T COG0275         221 EELEEALEAALDLLKPGGRLAVISFHSLED  250 (314)
T ss_pred             HHHHHHHHHHHHhhCCCcEEEEEEecchHH
Confidence            347788999999999999999999876555

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=83.76  E-value=1.8  Score=31.20  Aligned_cols=29  Identities=10%  Similarity=0.055  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196           27 HCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus        27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      +..+.|..+.+.|+|||+|+|+-+..-++
T Consensus       218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED  246 (305)
T TIGR00006       218 ELEEALQFAPNLLAPGGRLSIISFHSLED  246 (305)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence            46788899999999999999998865554

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=83.73  E-value=3.1  Score=29.50  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE-EeeecC
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV-VESILP   53 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii-~d~~~~   53 (115)
                      =.+++...|-+++.++|...|.+++.+|+||-.+++ +|...+
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~  198 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP  198 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence            466778899999999999999999999999977666 555443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.49  E-value=4  Score=27.89  Aligned_cols=41  Identities=12%  Similarity=0.235  Sum_probs=30.1

Q ss_pred             CCCCCCCCc-c--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVPK-G--DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p~-~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||=...+|+ +  |.|+..-..-..|+    .    ..+.|+|||++++-.-
T Consensus       127 gDG~~G~~~~aPyD~I~Vtaaa~~vP~----~----Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         127 GDGSKGWPEEAPYDRIIVTAAAPEVPE----A----LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCcccCCCCCCCcCEEEEeeccCCCCH----H----HHHhcccCCEEEEEEc
Confidence            455566664 3  99999998877776    2    3456999999998543

>PRK04457 spermidine synthase; Provisional

Probab=81.28  E-value=2  Score=30.09  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=26.4

Q ss_pred             ccEEEecccccc--CChHH-HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHN--WSDDH-CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~--~~d~~-~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++- .++.  .+... ..++++++++.|+|||++++.
T Consensus       137 yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        137 TDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            4999864 3322  22211 379999999999999999985

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=81.04  E-value=2.7  Score=30.20  Aligned_cols=30  Identities=13%  Similarity=0.072  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 048196           27 HCLKLLKIYYKSIPEDGKVIVVESILPELP   56 (115)
Q Consensus        27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~~   56 (115)
                      +....|..+.+.|+|||+++|+-+..-+++
T Consensus       214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDr  243 (296)
T PRK00050        214 ELERALEAALDLLKPGGRLAVISFHSLEDR  243 (296)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence            467889999999999999999988765553

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=80.35  E-value=3.1  Score=29.59  Aligned_cols=36  Identities=14%  Similarity=0.294  Sum_probs=24.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      .|+|++..-. ..+.+++.++|.++.+.|+||+++++
T Consensus       193 ~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  193 YDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             CCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEE
Confidence            4888876544 45666789999999999999998877

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PLN02366 spermidine synthase

Probab=80.26  E-value=4.5  Score=29.16  Aligned_cols=38  Identities=13%  Similarity=0.003  Sum_probs=25.6

Q ss_pred             ccEEEeccccccCChH--HHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDD--HCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++-..-+.-+..  -..++++.++++|+|||.+++.
T Consensus       166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            4999874322221211  1467899999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		2e-31
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		2e-30
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		3e-29
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		7e-20
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		4e-18
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-13
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		1e-13
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		1e-13
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		2e-12
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		3e-12
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		8e-11
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		7e-08
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		1e-07
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		1e-06
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		4e-04
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		4e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 79/113 (69%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF ++PK DA+FMKWI H+WSD+HCLK LK  Y+++P++GKVIV E ILP  P++S  +
Sbjct: 251 DMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLAT 310
Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K    +DV+M+  NP GK+RT+ EF  LA GAGF G +      N ++ +F K
Sbjct: 311 KGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 74/113 (65%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF  VPKGDAIF+KWI H+WSD+HCLKLLK  Y ++P+ GKVIV E ILP  P+ S  +
Sbjct: 254 DMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIAT 313
Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K     D LM+  NP GK+RT+ EF  LA  +GF G +      N +V +F K
Sbjct: 314 KVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF+ VP GD I MKWILH+WSD HC  LLK  Y ++P  GKV++V+ ILP  PE +  S
Sbjct: 252 DMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSS 311
Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           +    +D++M+  NP G++R + EF  LA GAGF+G +  +   N W  +F K
Sbjct: 312 QGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VP+GDA+ +K + HNWSD+ C++ L   +K++  +GKVI+VE ILPE P TS  S
Sbjct: 260 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEES 319
Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCN-LWVRDFYK 115
           K  S LD LM      G++RT+ ++  L+  +GFS  +      N L V +FYK
Sbjct: 320 KLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           D F +VP+GDA  +K + HNWSD+ C++ L   +K++  +GKVI+VE ILPE P TS  S
Sbjct: 260 DXFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEES 319
Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCN-LWVRDFYK 115
           K  S LD L       G++RT+ ++  L+  +GFS  +      N L V +FYK
Sbjct: 320 KLVSTLDNLXFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIP---EDGKVIVVESILPELPETS 59
           DMF+++P  DA+ +KW+LH+W+D+  LK+LK   ++I    +DGKVI+++  + E  +  
Sbjct: 240 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 299
Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRF 101
            +++     D++M+T    GK+RTK E+  L   AGFS  + 
Sbjct: 300 GLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKI 340

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIP---EDGKVIVVESILPELPETS 59
           DMF+++P  DA+ +KW+LH+W+D+  LK+LK   ++I    +DGKVI+++  + E  +  
Sbjct: 243 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 302
Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRF 101
            +++     D++M+T    GK+RTK E+  L   AGFS  + 
Sbjct: 303 GLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKI 343

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIP---EDGKVIVVESILPELPETS 59
           DMF+++P  DA+ +KW+LH+W+D+  LK+LK   ++I    +DGKVI+++  + E  +  
Sbjct: 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 303
Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRF 101
            +++     D++M+T    GK+RTK E+  L   AGFS  + 
Sbjct: 304 GLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKI 344

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED---GKVIVVESILPELPETS 59
           DMF ++P  DA+ +K+ILHNW+D  CL++LK   +++  D   GKV +++ ++ +  + +
Sbjct: 239 DMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN 298
Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
            V++    +DV M   N  GK+R + E+  L   AGF   +    T  L + + Y
Sbjct: 299 QVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED---GKVIVVESILPELPETS 59
           DMF +VPK DA+ +K +LH+W+D  C+K+LK   +++  D   GKVIV++ ++ E  + +
Sbjct: 244 DMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDEN 303
Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
            +++    ++V +   N  GK+R + E+  L   AGF   +   FT  + + + Y
Sbjct: 304 QLTQIKLLMNVTISCVN--GKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED---GKVIVVESILPELPETS 59
           D F ++P  DA+ +K+ILHNW+D  CL++LK   +++  D   GKV +++ ++ +  + +
Sbjct: 239 DXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDEN 298
Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
            V++     DV     N  GK+R + E+  L   AGF   +    T  L + + Y
Sbjct: 299 QVTQIKLLXDVNXACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           D  + VP  D   +K ILHNW D+  +++L    +  P  G+V+V+++++PE       +
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE----GNDA 295
Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGF 96
            ++ + D   +    +G++RT  E   L T AG 
Sbjct: 296 HQSKEXDFXXLAAR-TGQERTAAELEPLFTAAGL 328

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 3   DMFQN-VPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F++ +P+ D   +  +LH+W+D  C  LL+  Y +    G ++V+ES+L E      +
Sbjct: 236 DFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLL 295
Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFE 102
           ++  S L++L+ T+   G++RT   +  L + AGF   +F+
Sbjct: 296 TQLYS-LNMLVQTE---GQERTPTHYHMLLSSAGFRDFQFK 332

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 3   DMFQNVPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F+ +P G D   +K +LH+W DD  +++L+    +   D +++V+++++ E P  ST+
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTL 319
Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
                            G +R++ EF  L   +G    R
Sbjct: 320 FVDLLL------LVLVGGAERSESEFAALLEKSGLRVER 352

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 3   DMFQNVP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F+ +P   D + + ++L NWSD+  L +L+   +++   G+++V++    ++      
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR--ADVEGDGAD 297
Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFS 97
              ++ LD+ M+T    G+ RT+ E + LA  AG +
Sbjct: 298 RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLA 332

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 3   DMFQNVP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F+ +P K DAI + ++L NW D   +++L    +++   G++++ E    +L E S  
Sbjct: 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER--DDLHENS-F 297
Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGF 96
           +++ ++LD+ M+     G  RT+ ++  LA  AG 
Sbjct: 298 NEQFTELDLRMLV-FLGGALRTREKWDGLAASAGL 331

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	8e-47
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-45
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	4e-43
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-39
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	2e-39
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	8e-38
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	3e-37
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	9e-37
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	2e-36
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-36
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	2e-35
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	3e-33
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	5e-32
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	3e-29
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	6e-27

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  153 bits (387), Expect = 8e-47
 Identities = 53/113 (46%), Positives = 73/113 (64%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF+ VP GD I MKWILH+WSD HC  LLK  Y ++P  GKV++V+ ILP  PE +  S
Sbjct: 252 DMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSS 311

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           +    +D++M+  NP G++R + EF  LA GAGF+G +  +   N W  +F K
Sbjct: 312 QGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  150 bits (380), Expect = 1e-45
 Identities = 59/113 (52%), Positives = 74/113 (65%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF  VPKGDAIF+KWI H+WSD+HCLKLLK  Y ++P+ GKVIV E ILP  P+ S  +
Sbjct: 254 DMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIAT 313

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK 115
           K     D LM+  NP GK+RT+ EF  LA  +GF G +      N +V +F K
Sbjct: 314 KVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  143 bits (362), Expect = 4e-43
 Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VP+GDA+ +K + HNWSD+ C++ L   +K++  +GKVI+VE ILPE P TS  S
Sbjct: 260 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEES 319

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCN-LWVRDFYK 115
           K  S LD LM      G++RT+ ++  L+  +GFS  +      N L V +FYK
Sbjct: 320 KLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  133 bits (338), Expect = 1e-39
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           D  + VP  D   +K ILHNW D+  +++L    + +P  G+V+V+++++PE  +     
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQ-- 297

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
             + ++D +M+    +G++RT  E   L T AG    R
Sbjct: 298 --SKEMDFMMLA-ARTGQERTAAELEPLFTAAGLRLDR 332

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  133 bits (336), Expect = 2e-39
 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 5/115 (4%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED---GKVIVVESILPELPETS 59
           DMF ++P  DA+ +K+ILHNW+D  CL++LK   +++  D   GKV +++ ++ +  + +
Sbjct: 239 DMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN 298

Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
            V++    +DV M   N  GK+R + E+  L   AGF   +    T  L + + Y
Sbjct: 299 QVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  129 bits (327), Expect = 8e-38
 Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 3   DMFQNVPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F+ +P G D   +K +LH+W DD  +++L+    ++  D +++V+++++ E P  ST+
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTL 319

Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR-FEWFTCNLWVRDFYK 115
                 +D+L++     G +R++ EF  L   +G    R        + + +  +
Sbjct: 320 F-----VDLLLLV-LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  128 bits (323), Expect = 3e-37
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 9/119 (7%)

Query: 3   DMFQNVPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F+ +P   D + + ++L NWSD+  L +L+   +++   G+++V++    E       
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRF 299

Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFE-----WFTCNLWVRDFYK 115
                 LD+ M+T    G+ RT+ E + LA  AG +              +  + +F  
Sbjct: 300 FST--LLDLRMLT-FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  126 bits (318), Expect = 9e-37
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 3   DMFQNVP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           DM Q VP  GD   +  I+ +  +   L+LL    +++  DG+V+V+E  +     +   
Sbjct: 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPM- 283

Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
              +   DV +     +G+ RT  E + L    GF+  R
Sbjct: 284 ---SVLWDVHLFM-ACAGRHRTTEEVVDLLGRGGFAVER 318

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  125 bits (316), Expect = 2e-36
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 3   DMFQNVPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
             F  +P G     +  +LH+W D   + +L+   ++    G V+V+E++  +       
Sbjct: 227 SFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD------- 279

Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
               + +D+ M+T    GK+R+  E   LA  AG +   
Sbjct: 280 EHAGTGMDLRMLTYF-GGKERSLAELGELAAQAGLAVRA 317

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  125 bits (317), Expect = 2e-36
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 3   DMFQNVPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D F+ +P+  DAI + ++L NW D   +++L    +++   G++++ E         ++ 
Sbjct: 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD---DLHENSF 297

Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
           +++ ++LD+ M+     G  RT+ ++  LA  AG     
Sbjct: 298 NEQFTELDLRMLV-FLGGALRTREKWDGLAASAGLVVEE 335

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  123 bits (310), Expect = 2e-35
 Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 4/115 (3%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIP---EDGKVIVVESILPELPETS 59
           DMF+++P  DA+ +KW+LH+W+D+  LK+LK   ++I    +DGKVI+++  + E  +  
Sbjct: 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 303

Query: 60  TVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
            +++     D++M+T    GK+RTK E+  L   AGFS  +    +    + + Y
Sbjct: 304 GLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  117 bits (295), Expect = 3e-33
 Identities = 11/99 (11%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 3   DMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV 61
           D+++ + P+ DA+    IL++ ++     + K  + ++   G++++++ ++ +    +  
Sbjct: 248 DIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFD 307

Query: 62  SKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
              +  L   M         + +  +  +    G+    
Sbjct: 308 YLSHYILGAGMPFSV--LGFKEQARYKEILESLGYKDVT 344

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  113 bits (285), Expect = 5e-32
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 3   DMFQNV--PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST 60
             F+       D + +   LH++    C +LL+    ++  +GKVIV + I      T  
Sbjct: 223 SAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPP 282

Query: 61  VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRF 101
            +       ++M+   P+G   T  E+ ++ + AGFS ++ 
Sbjct: 283 DAA---AFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  106 bits (267), Expect = 3e-29
 Identities = 11/102 (10%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 3   DMFQNVP----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPET 58
           ++           D + +   LH +      +++      +   G ++++   + +   T
Sbjct: 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVT 296

Query: 59  STVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
             +S       + MM     G+         +   AG +   
Sbjct: 297 PALSAD---FSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  100 bits (252), Expect = 6e-27
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 3   DMFQN---VPKG-DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE-LPE 57
           ++       P G DA++M   L  +S++  + +L    +SI +D KV ++E++      E
Sbjct: 237 NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYE 296

Query: 58  TSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTR 100
           T++       L    M  N + K     + +     AG     
Sbjct: 297 TASYCLTQISLYFTAMA-NGNSKMFHSDDLIRCIENAGLEVEE 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.97
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.94
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.93
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.89
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.89
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.88
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.88
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.87
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.87
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.87
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.84
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.83
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.8
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.8
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.8
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.79
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.48
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.42
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.3
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.3
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.26
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.24
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.23
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.21
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.21
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.19
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.19
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.17
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.16
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.14
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.14
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.14
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.12
3ocj_A	305	Putative exported protein; structural genomics, PS	99.12
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.11
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.06
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.03
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.03
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.99
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.98
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.98
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.97
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.97
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.97
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.97
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.96
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.96
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.95
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.93
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.91
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.9
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.89
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.89
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.89
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.88
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.88
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.85
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.84
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.82
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.8
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.8
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.79
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.77
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.76
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.75
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.74
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.74
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.7
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.68
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.66
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.65
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.64
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.63
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.55
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.54
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.5
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.46
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.44
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.34
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.33
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.29
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.25
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.17
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.05
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.03
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.03
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.02
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.9
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.88
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.87
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.66
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.65
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.64
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.61
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.59
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.51
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.51
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.5
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.49
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.49
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.47
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.44
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.4
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.39
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.33
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.31
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.25
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.14
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.1
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.1
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.1
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.05
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.02
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.94
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.92
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.89
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.86
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.8
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.78
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.73
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.72
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.72
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.64
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.59
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.52
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.51
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.49
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.44
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.42
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.34
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.21
2frn_A	278	Hypothetical protein PH0793; structural genomics,	96.18
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.08
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.02
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.9
3sso_A	419	Methyltransferase; macrolide, natural product, ros	95.78
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	95.76
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	95.76
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	95.69
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.62
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.61
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	95.55
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.48
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	95.43
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.4
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	95.35
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	95.27
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.27
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.21
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	95.21
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.21
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.17
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.12
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	95.08
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	95.07
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	94.8
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	94.77
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	94.72
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	94.59
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	94.59
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.55
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	94.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	94.46
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	94.44
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	94.42
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	94.41
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	94.27
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.15
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	94.03
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	93.99
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	93.89
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.76
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	93.76
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	93.68
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	93.3
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	93.19
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	93.12
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	93.1
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	93.03
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	92.99
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	92.89
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	92.75
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	92.71
1ws6_A	171	Methyltransferase; structural genomics, riken stru	92.43
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	92.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	92.29
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	91.91
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	91.53
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	91.52
2i7c_A	283	Spermidine synthase; transferase, structural genom	91.43
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	91.26
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	91.01
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	90.79
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	90.75
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	90.61
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	90.58
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	90.55
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	90.39
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	90.24
2esr_A	177	Methyltransferase; structural genomics, hypothetic	90.05
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	90.02
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	89.88
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	89.67
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	89.57
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	89.4
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	89.12
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	88.99
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	88.77
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	88.62
2b25_A	336	Hypothetical protein; structural genomics, methyl	88.29
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	88.09
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	88.05
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	87.8
3k6r_A	278	Putative transferase PH0793; structural genomics,	87.75
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	87.1
2o07_A	304	Spermidine synthase; structural genomics, structur	86.96
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	86.86
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	86.86
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	86.48
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	86.38
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	86.27
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	86.08
2pt6_A	321	Spermidine synthase; transferase, structural genom	86.07
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	85.86
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	85.31
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	85.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	85.0
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	84.63
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	83.51
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	82.81
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	81.97
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	81.12

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.97  E-value=8.2e-31  Score=187.41  Aligned_cols=111  Identities=26%  Similarity=0.441  Sum_probs=100.3

Q ss_pred             CCCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            1 MDDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         1 ~gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +||||+ +.|.+|+|++++|||+|+|+++.+||++++++|+|||+++|+|.+.++++..+.   ....+|+.|++.+ +|
T Consensus       234 ~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~---~~~~~dl~ml~~~-~g  309 (353)
T 4a6d_A          234 EGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPL---LTQLYSLNMLVQT-EG  309 (353)
T ss_dssp             ESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH---HHHHHHHHHHHSS-SC
T ss_pred             cCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCH---HHHHHHHHHHHhC-CC
Confidence            489998 566789999999999999999999999999999999999999999987755442   3456899999864 99


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      ++||.+||++||++|||+.++++++++.+++|+|+|
T Consensus       310 ~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          310 QERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence            999999999999999999999999999999999998

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.94  E-value=1.5e-26  Score=165.97  Aligned_cols=115  Identities=46%  Similarity=0.913  Sum_probs=100.8

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      .|||++++|++|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++........+....+|+.|+..+.+|+
T Consensus       250 ~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~  329 (364)
T 3p9c_A          250 GGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGR  329 (364)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCC
T ss_pred             eCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCc
Confidence            38999988878999999999999999999999999999999999999999988765433222334567888885446899


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      +||.+||+++|++|||+.+++.++.+..++||++|
T Consensus       330 ~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          330 ERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             CCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             cCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence            99999999999999999999999999999999997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.93  E-value=8.7e-26  Score=162.09  Aligned_cols=115  Identities=51%  Similarity=0.895  Sum_probs=100.8

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      .|||++++|.+|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++....+...+....+|+.|+..+.+|+
T Consensus       252 ~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~  331 (368)
T 3reo_A          252 GGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGK  331 (368)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCC
T ss_pred             ecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCc
Confidence            38999988878999999999999999999999999999999999999999988765443223344568888886545899


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      +||.+||+++|++|||+.+++.+..+..++||++|
T Consensus       332 ~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          332 ERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             CCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             cCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence            99999999999999999999999999999999987

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.89  E-value=6e-23  Score=146.15  Aligned_cols=109  Identities=27%  Similarity=0.517  Sum_probs=96.0

Q ss_pred             CCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCcee
Q 048196            2 DDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKK   81 (115)
Q Consensus         2 gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~   81 (115)
                      ||+++++|..|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++.....    ....+++.|+.. .+++.
T Consensus       239 ~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~-~~~~~  313 (348)
T 3lst_A          239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH----QSKEMDFMMLAA-RTGQE  313 (348)
T ss_dssp             CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC----HHHHHHHHHHHT-TSCCC
T ss_pred             cCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc----hhhhcChhhhhc-CCCcC
Confidence            7999888866999999999999999999999999999999999999999888763322    234577888765 58999


Q ss_pred             CCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           82 RTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        82 rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      ||.+||.++|++|||+.+++.+..+..++||++|
T Consensus       314 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          314 RTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence            9999999999999999999999778899999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.89  E-value=8.4e-23  Score=145.78  Aligned_cols=114  Identities=33%  Similarity=0.605  Sum_probs=97.9

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCC---CCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPE---DGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p---gg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      .||+++++|.+|+|++++++|+|+|+++.++|++++++|+|   ||+++|.|.+.++....+........+++.|+.. .
T Consensus       242 ~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~  320 (358)
T 1zg3_A          242 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTM-F  320 (358)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHH-H
T ss_pred             eCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhcc-C
Confidence            37999988878999999999999999999999999999999   9999999999876644321112345678877764 4


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      +|+.||.+||.++|+++||+.+++.+..+..++||++|
T Consensus       321 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  358 (358)
T 1zg3_A          321 LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP  358 (358)
T ss_dssp             SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence            89999999999999999999999999888899999987

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.88  E-value=1.2e-22  Score=145.60  Aligned_cols=108  Identities=23%  Similarity=0.507  Sum_probs=95.8

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      ||+++++|. +|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++.....     ...+|+.|+.. .+|+
T Consensus       259 ~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-----~~~~d~~~~~~-~~g~  332 (369)
T 3gwz_A          259 GDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-----TLFVDLLLLVL-VGGA  332 (369)
T ss_dssp             CCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-----HHHHHHHHHHH-HSCC
T ss_pred             cCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-----hhHhhHHHHhh-cCCc
Confidence            799988884 6999999999999999999999999999999999999999988764321     34678888775 5899


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEE-cCCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEW-FTCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~lie~~~  115 (115)
                      +||.+||.++|++|||+.+++.+ ..+..++||++|
T Consensus       333 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          333 ERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             CBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             cCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence            99999999999999999999999 578899999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.88  E-value=1.1e-22  Score=143.69  Aligned_cols=105  Identities=21%  Similarity=0.370  Sum_probs=92.1

Q ss_pred             CCCCCCCC-cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            2 DDMFQNVP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         2 gd~~~~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      ||+++++| ..|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++.  .+     ...+|+.|+.. .+++
T Consensus       226 ~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~-~~~~  297 (332)
T 3i53_A          226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTY-FGGK  297 (332)
T ss_dssp             CCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHH-HSCC
T ss_pred             CCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhh-CCCC
Confidence            79998888 5699999999999999999999999999999999999999988765  21     24577787765 5899


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      .||.+||.++|++|||+.+++.+.++ .++||++|
T Consensus       298 ~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~  331 (332)
T 3i53_A          298 ERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA  331 (332)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence            99999999999999999999999988 99999975

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.87  E-value=5.5e-22  Score=141.28  Aligned_cols=112  Identities=31%  Similarity=0.604  Sum_probs=95.8

Q ss_pred             CCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCC---CCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPE---DGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p---gg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+++++|.+|+|++++++|+|+|+++.++|++++++|+|   ||+++|.|...++....+........+++.|+. . +
T Consensus       238 ~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~  315 (352)
T 1fp2_A          238 GDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-N  315 (352)
T ss_dssp             CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-T
T ss_pred             ccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-c
Confidence            7999888888999999999999999999999999999999   999999999887654331111234457777776 3 5


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      |+.||.+||.++|++|||+.+++.+..+..+|||++|
T Consensus       316 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  352 (352)
T 1fp2_A          316 GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  352 (352)
T ss_dssp             CCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence            8999999999999999999999998888899999987

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.87  E-value=3.2e-22  Score=143.50  Aligned_cols=113  Identities=43%  Similarity=0.692  Sum_probs=94.6

Q ss_pred             CCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCcee
Q 048196            2 DDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKK   81 (115)
Q Consensus         2 gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~   81 (115)
                      ||+++++|.+|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++....+...+....+++.|+.. .+++.
T Consensus       259 ~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~  337 (372)
T 1fp1_D          259 GDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGRE  337 (372)
T ss_dssp             CCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-HSCCC
T ss_pred             CCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-cCCcc
Confidence            79998888789999999999999999999999999999999999999998876643321122345677777753 47899


Q ss_pred             CCHHHHHHHHHhCCCCeeEEEEc-CCceEEEEEEC
Q 048196           82 RTKHEFLTLATGAGFSGTRFEWF-TCNLWVRDFYK  115 (115)
Q Consensus        82 rt~~e~~~ll~~aGf~~~~~~~~-~~~~~lie~~~  115 (115)
                      ||.+||.++|+++||+.+++.+. .+..+|||++|
T Consensus       338 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          338 RTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             EEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             CCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            99999999999999999999885 44269999987

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.87  E-value=7.3e-22  Score=139.44  Aligned_cols=109  Identities=24%  Similarity=0.378  Sum_probs=94.8

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      ||+++++|. .|+|++++++|+|+++++.++|++++++|+|||+++|.|.+.++....    .....+++.|+.. .+|+
T Consensus       224 ~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~-~~~~  298 (334)
T 2ip2_A          224 GDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMA-CAGR  298 (334)
T ss_dssp             SCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHH-HSCC
T ss_pred             CCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhh-CCCc
Confidence            789888776 599999999999999999999999999999999999999988765332    1235577777764 3799


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      +||.+||.++++++||+.+++.+.++..++||++|
T Consensus       299 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          299 HRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             CCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence            99999999999999999999999888899999986

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.84  E-value=8.8e-21  Score=135.74  Aligned_cols=114  Identities=17%  Similarity=0.203  Sum_probs=90.2

Q ss_pred             CCCCCCC---CCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhchhccchhccc
Q 048196            1 MDDMFQN---VPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-VSKRNSQLDVLMMTQ   75 (115)
Q Consensus         1 ~gd~~~~---~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~~~~~~~~~l~~~~~   75 (115)
                      .||++++   +|. .|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++...... ........++.|+. 
T Consensus       235 ~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-  313 (363)
T 3dp7_A          235 GANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA-  313 (363)
T ss_dssp             ECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS-
T ss_pred             EccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh-
Confidence            3799984   674 59999999999999999999999999999999999999998876543211 00111223444444 


Q ss_pred             CCCceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           76 NPSGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        76 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                      ..+++.||.+||.++|++|||+.+++.+.. ...++||++|
T Consensus       314 ~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          314 NGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             CSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred             CCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence            247889999999999999999999988664 5699999875

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.83  E-value=2e-20  Score=132.94  Aligned_cols=110  Identities=9%  Similarity=0.111  Sum_probs=92.1

Q ss_pred             CCCCCCC---CCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccC
Q 048196            1 MDDMFQN---VPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQN   76 (115)
Q Consensus         1 ~gd~~~~---~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (115)
                      .||+++.   .|. .|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++....+.   ....+++.|+..+
T Consensus       235 ~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~  311 (352)
T 3mcz_A          235 EKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA---LSADFSLHMMVNT  311 (352)
T ss_dssp             ECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH---HHHHHHHHHHHHS
T ss_pred             eCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc---hHHHhhHHHHhhC
Confidence            3799984   565 59999999999999999999999999999999999999999887644332   2356788887655


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      .+++.||.+||.++|++|||++++..  .+..+++.++|
T Consensus       312 ~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          312 NHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred             CCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence            68999999999999999999998843  36688888876

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.80  E-value=1.9e-19  Score=126.87  Aligned_cols=110  Identities=21%  Similarity=0.324  Sum_probs=93.1

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||+++ ++|. .|+|++++++|+|+++++.++|++++++|+|||+++|.|...++....+.   ....+++.|+....++
T Consensus       222 ~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~  298 (335)
T 2r3s_A          222 GSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPP---DAAAFSLVMLATTPNG  298 (335)
T ss_dssp             SCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSH---HHHHHHHHHHHHSSSC
T ss_pred             cccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCch---HHHHHHHHHHeeCCCC
Confidence            78888 6776 59999999999999999999999999999999999999998876533321   2345677777655588


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEE
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY  114 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~  114 (115)
                      +.||.++|.++++++||+.+++.+..+..++++++
T Consensus       299 ~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          299 DAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             CCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred             CcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence            99999999999999999999999888778888775

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.80  E-value=6.8e-20  Score=130.49  Aligned_cols=109  Identities=24%  Similarity=0.426  Sum_probs=92.0

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee-cCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI-LPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||+++++|. .|+|++++++|+|+++++.++|++++++|+|||+++|.|.. .++.....    ....+++.|+.. .++
T Consensus       240 ~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~-~~~  314 (360)
T 1tw3_A          240 GDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE----QFTELDLRMLVF-LGG  314 (360)
T ss_dssp             CCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSH----HHHHHHHHHHHH-HSC
T ss_pred             CCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcc----hhhhccHHHhhh-cCC
Confidence            788887886 59999999999999999999999999999999999999988 65443221    234567777654 378


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCCc-----eEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTCN-----LWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~-----~~lie~~~  115 (115)
                      +.||.++|.++|+++||+.+++.+.++.     .++||++|
T Consensus       315 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          315 ALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  355 (360)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence            9999999999999999999999888665     89999975

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.80  E-value=5.4e-19  Score=126.05  Aligned_cols=107  Identities=10%  Similarity=0.220  Sum_probs=88.4

Q ss_pred             CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      ||+++ ++|.+|+|++++++|+|+|+++.++|++++++|+|||+++|.|...++. ..+..   ...+  .|+....+++
T Consensus       247 ~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~---~~~~--~~~~~~~~g~  320 (359)
T 1x19_A          247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNF---DYLS--HYILGAGMPF  320 (359)
T ss_dssp             CCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCH---HHHH--HHGGGGGSSC
T ss_pred             CccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchH---HHHH--HHHHhcCCCC
Confidence            78888 6666799999999999999999999999999999999999999988765 22211   1222  4443334577


Q ss_pred             e----CCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           81 K----RTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        81 ~----rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      +    ||.+||.++|+++||+.+++.+.+ ..++|+++|
T Consensus       321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          321 SVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             CCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             cccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence            7    999999999999999999999887 889999987

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.79  E-value=1.5e-19  Score=129.20  Aligned_cols=109  Identities=24%  Similarity=0.445  Sum_probs=88.8

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee--ecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES--ILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+++++|. .|+|++++++|+|+++++.++|++++++|+|||+++|.|.  +.++....    .....+++.|+.. .+
T Consensus       239 ~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~-~~  313 (374)
T 1qzz_A          239 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR----FFSTLLDLRMLTF-MG  313 (374)
T ss_dssp             CCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------H----HHHHHHHHHHHHH-HS
T ss_pred             CCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCc----chhhhcchHHHHh-CC
Confidence            788887886 5999999999999999999999999999999999999998  76654221    1234567777654 47


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcCCce-----EEEEEEC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNL-----WVRDFYK  115 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~-----~lie~~~  115 (115)
                      ++.||.++|.++|+++||+.+++...++..     ++||++|
T Consensus       314 ~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          314 GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             CCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             CcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence            899999999999999999999999888777     9999875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.48  E-value=1.5e-13  Score=94.50  Aligned_cols=113  Identities=13%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc-------
Q 048196            2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM-------   73 (115)
Q Consensus         2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~-------   73 (115)
                      ||+.+ +.++.|++++..++|++++++..++|++++++|+|||++++.|....+++...... .....++...       
T Consensus       130 ~D~~~~~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~e  208 (261)
T 4gek_A          130 GDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELE  208 (261)
T ss_dssp             SCTTTCCCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHH-HHHHHHHHHHTTGGGST
T ss_pred             cccccccccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHH-HHHHHHHHHHcCCCHHH
Confidence            67777 66667999999999999999999999999999999999999998876653211000 0000000000       


Q ss_pred             ------ccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           74 ------TQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        74 ------~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                            .....-...|.+++.++|++|||+.+++..-.-.+.-+.|+|
T Consensus       209 i~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K  256 (261)
T 4gek_A          209 ISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK  256 (261)
T ss_dssp             THHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence                  000001346889999999999999998754333344444554

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.42  E-value=1.1e-12  Score=87.78  Aligned_cols=112  Identities=16%  Similarity=0.129  Sum_probs=78.7

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhc-------cch-
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQL-------DVL-   71 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~-------~l~-   71 (115)
                      ||+.+ +.+. .|+|++..++|++++++..++|+++++.|+|||++++.+...++.......  ....+       .+. 
T Consensus        99 ~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  176 (234)
T 3dtn_A           99 ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL--NKTIWRQYVENSGLTE  176 (234)
T ss_dssp             SCTTTCCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH--HHHHHHHHHHTSSCCH
T ss_pred             CchhccCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH--HHHHHHHHHHhcCCCH
Confidence            57766 4443 499999999999999988899999999999999999999887654211100  00000       000 


Q ss_pred             -----hcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           72 -----MMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        72 -----~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                           ........+.+|.++|.++|++|||+.+++......++++-.+|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~  225 (234)
T 3dtn_A          177 EEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK  225 (234)
T ss_dssp             HHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence                 00001234567899999999999999999887776777765543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.30  E-value=9.9e-12  Score=82.35  Aligned_cols=113  Identities=18%  Similarity=0.262  Sum_probs=74.5

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhccc-CCC
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQ-NPS   78 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~   78 (115)
                      ||+.+ +.+. .|+|++..++|++++.+...+|+++++.|+|||++++.+...+...................... ...
T Consensus        96 ~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (220)
T 3hnr_A           96 GDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQT  175 (220)
T ss_dssp             CCSSSCCCCSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CChhhcCCCCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcch
Confidence            67776 5543 59999999999999998888999999999999999999876654311100000000000000000 001


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      ....|.++|.++|+++||+++.+ ...+..+++++.|
T Consensus       176 ~~~~~~~~~~~~l~~aGf~v~~~-~~~~~~w~~~~~~  211 (220)
T 3hnr_A          176 EYYTRIPVMQTIFENNGFHVTFT-RLNHFVWVMEATK  211 (220)
T ss_dssp             SCCCBHHHHHHHHHHTTEEEEEE-ECSSSEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHCCCEEEEe-eccceEEEEeehh
Confidence            12348899999999999976654 4457888887764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.30  E-value=3e-11  Score=79.94  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++..++|++++.  ..+|+++++.|+|||++++.+.........+                 ..
T Consensus        95 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~  155 (219)
T 3dh0_A           95 SEENKIPLPDNTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PP  155 (219)
T ss_dssp             CBTTBCSSCSSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CG
T ss_pred             cccccCCCCCCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------ch
Confidence            56666 5554  4999999999999874  7999999999999999999987665542211                 01


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      ...++.++|.++++++||+.+++....+....+.++|
T Consensus       156 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          156 EEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             GGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred             hcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence            2235789999999999999999988877777666654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.26  E-value=3.8e-11  Score=79.17  Aligned_cols=99  Identities=21%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||+.+..+.  .|+|++..++|++++++..++|+++++.|+|||++++.+...+............. ..+.-.  ...+
T Consensus        97 ~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~  173 (218)
T 3ou2_A           97 QDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPE-VAVRRT--LQDG  173 (218)
T ss_dssp             CCTTSCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEE--CTTS
T ss_pred             cccccCCCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccc-cceeee--cCCc
Confidence            566664443  49999999999999998899999999999999999999976643211100000000 000000  1122


Q ss_pred             -------eeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           80 -------KKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        80 -------~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                             ...|.++|.++|+++||++.....
T Consensus       174 ~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~  204 (218)
T 3ou2_A          174 RSFRIVKVFRSPAELTERLTALGWSCSVDEV  204 (218)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             chhhHhhcCCCHHHHHHHHHHCCCEEEeeec
Confidence                   235999999999999999544433

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.24  E-value=1.5e-11  Score=83.80  Aligned_cols=114  Identities=16%  Similarity=0.121  Sum_probs=74.0

Q ss_pred             CCCCC-CCCc-ccEEEecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch------------hhh--
Q 048196            2 DDMFQ-NVPK-GDAIFMKW-ILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPELPETST------------VSK--   63 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~-vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~------------~~~--   63 (115)
                      ||+.+ +.+. .|+|++.. ++|++++ ++..++|+++++.|+|||+++|.+...++.-....            ...  
T Consensus       100 ~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
T 3pfg_A          100 GDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVS  179 (263)
T ss_dssp             CCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEE
T ss_pred             CChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEE
Confidence            67777 4444 49999998 9999976 56789999999999999999996543333211000            000  


Q ss_pred             ------hchhccchhcccCCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           64 ------RNSQLDVLMMTQNPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        64 ------~~~~~~l~~~~~~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                            ....+++.+.....+           .+.+|.+||.++|++|||+++++........++.++|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          180 HSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence                  000111222111111           3446899999999999999988766556666666654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.23  E-value=1.5e-11  Score=82.25  Aligned_cols=114  Identities=14%  Similarity=0.079  Sum_probs=72.8

Q ss_pred             CCCCC-CCCc-ccEEEe-ccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchh------------hh--
Q 048196            2 DDMFQ-NVPK-GDAIFM-KWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTV------------SK--   63 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~-~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~------------~~--   63 (115)
                      +|+.+ +.+. .|+|++ ..++|++++ ++..++|+++++.|+|||++++.+...++.......            ..  
T Consensus        90 ~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (239)
T 3bxo_A           90 GDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVS  169 (239)
T ss_dssp             CCTTTCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEE
T ss_pred             CCHHHcccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEE
Confidence            56666 4443 499995 559999865 678999999999999999999977655443211000            00  


Q ss_pred             ------hchhccchhcccCCCc-----------eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           64 ------RNSQLDVLMMTQNPSG-----------KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        64 ------~~~~~~l~~~~~~~~g-----------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                            ......+.++....++           +.+|.++|.++|++|||++..+....+...++.++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          170 HSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEecCCCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                  0000111222111111           346999999999999997666554456678888775

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.21  E-value=6.5e-11  Score=79.86  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=68.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++.+++|++++++..++|+++++.|+|||++++.+........         ..+.     ...
T Consensus       147 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~-----~~~  212 (254)
T 1xtp_A          147 ASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDS  212 (254)
T ss_dssp             SCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTT
T ss_pred             ccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc-----cCC
Confidence            46655 4553  49999999999999988999999999999999999999875443210         0110     123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ...++.++|.++|+++||+++++....
T Consensus       213 ~~~~~~~~~~~~l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          213 SLTRSDIHYKRLFNESGVRVVKEAFQE  239 (254)
T ss_dssp             EEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred             cccCCHHHHHHHHHHCCCEEEEeeecC
Confidence            456899999999999999999887654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.21  E-value=6.5e-11  Score=77.57  Aligned_cols=97  Identities=11%  Similarity=0.053  Sum_probs=72.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +.+.  .|+|++..++|++++++..++|+++++.|+|||++++.+...+...  .        +.-  .  ...
T Consensus        91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~--------~~~--~--~~~  156 (203)
T 3h2b_A           91 GTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE--P--------MYH--P--VAT  156 (203)
T ss_dssp             CCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE--E--------ECC--S--SSC
T ss_pred             CcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh--h--------hhc--h--hhh
Confidence            56666 5553  4999999999999987889999999999999999999876544311  0        000  0  124


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRD  112 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie  112 (115)
                      ...++.++|.++|+++||+++++...+ .++..+.
T Consensus       157 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~  191 (203)
T 3h2b_A          157 AYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLT  191 (203)
T ss_dssp             EEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEE
T ss_pred             hccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhh
Confidence            456799999999999999999987765 3444443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.19  E-value=1e-10  Score=78.73  Aligned_cols=89  Identities=19%  Similarity=0.255  Sum_probs=69.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++.+++|++++++..++|+++++.|+|||++++.+...+.   ..       .++-     ..+
T Consensus       135 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-------~~~~-----~~~  199 (241)
T 2ex4_A          135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE---GV-------ILDD-----VDS  199 (241)
T ss_dssp             CCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS---SE-------EEET-----TTT
T ss_pred             cChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC---cc-------eecc-----cCC
Confidence            45555 3443  49999999999999988889999999999999999999987664   11       0110     124


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ...++.++|.++|+++||+++++....
T Consensus       200 ~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          200 SVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             EEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cccCCHHHHHHHHHHcCCeEEEeeecC
Confidence            455799999999999999999887664

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.19  E-value=4.9e-12  Score=83.32  Aligned_cols=109  Identities=13%  Similarity=0.151  Sum_probs=71.3

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchh-ccchhcccCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQ-LDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~-~~l~~~~~~~   77 (115)
                      +|+.+ +++.  .|+|++..++|++++.  .++|+++++.|+|||++++.+...+.............. ........ .
T Consensus       100 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  176 (219)
T 3dlc_A          100 GDVHNIPIEDNYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-K  176 (219)
T ss_dssp             CBTTBCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-H
T ss_pred             cCHHHCCCCcccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-h
Confidence            56666 5653  4999999999999764  689999999999999999987544331100000000000 00000000 1


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEE
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDF  113 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~  113 (115)
                      +...+|.++|.++|+++||+.+++.......+++-.
T Consensus       177 ~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~  212 (219)
T 3dlc_A          177 NISQENVERFQNVLDEIGISSYEIILGDEGFWIIIS  212 (219)
T ss_dssp             HSSHHHHHHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred             ccccCCHHHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence            233457899999999999999999887776666543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.17  E-value=8.7e-11  Score=79.56  Aligned_cols=95  Identities=16%  Similarity=0.209  Sum_probs=71.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++..++|++++++..++|+++++.|+|||++++.+...+......      ..+.-...  ..+
T Consensus       109 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~--~~~  180 (266)
T 3ujc_A          109 NDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD------DEFKEYVK--QRK  180 (266)
T ss_dssp             CCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC------HHHHHHHH--HHT
T ss_pred             CccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch------HHHHHHHh--cCC
Confidence            57766 5653  4999999999999988899999999999999999999998766521111      00110101  113


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...++.++|.++++++||+.+++...
T Consensus       181 ~~~~~~~~~~~~l~~~Gf~~~~~~~~  206 (266)
T 3ujc_A          181 YTLITVEEYADILTACNFKNVVSKDL  206 (266)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence            34578999999999999999887765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.16  E-value=3.6e-11  Score=79.81  Aligned_cols=113  Identities=12%  Similarity=-0.019  Sum_probs=74.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhh-hhc-hhccchhccc-
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS-KRN-SQLDVLMMTQ-   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~-~~~-~~~~l~~~~~-   75 (115)
                      +|+.+ +++.  .|+|++..++|.+..++..++|+++++.|+|||++++.+...+......... ... ..+...+... 
T Consensus        92 ~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (227)
T 1ve3_A           92 GDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQ  171 (227)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEET
T ss_pred             CchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCc
Confidence            67777 5553  4999999998888888889999999999999999999887533210000000 000 0000000000 


Q ss_pred             --------C-C-------CceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           76 --------N-P-------SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        76 --------~-~-------~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                              . .       .....+ .+|.++|+++||+.+++..+.....+++++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          172 EERTVVIEFKSEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             TTTEEEEEC-----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             cccEEEEEeccchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence                    0 0       011122 4899999999999999999887888999876

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.14  E-value=1.8e-10  Score=79.61  Aligned_cols=93  Identities=14%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +++.  .|+|++..++|++++  ..++|+++++.|+|||++++.+............   ...+...     ..
T Consensus       139 ~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~-----~~  208 (297)
T 2o57_A          139 GSFLEIPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRI-----KL  208 (297)
T ss_dssp             CCTTSCSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHH-----TC
T ss_pred             cCcccCCCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHH---HHHHHHh-----cC
Confidence            67777 6654  399999999999998  5899999999999999999999877654322111   1111111     11


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ....+.++|.++++++||+++++...
T Consensus       209 ~~~~~~~~~~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          209 HDMGSLGLYRSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             SSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence            23468999999999999999888764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.14  E-value=3.7e-10  Score=77.68  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC-----Cchhhhhchhccchhccc
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPE-----TSTVSKRNSQLDVLMMTQ   75 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~-----~~~~~~~~~~~~l~~~~~   75 (115)
                      +|+.+ +|. .|+|++..++|++++++..++|+++++.|+|||++++.+...+....     .+.........+......
T Consensus       121 ~d~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (287)
T 1kpg_A          121 AGWEQ-FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEI  199 (287)
T ss_dssp             SCGGG-CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHT
T ss_pred             CChhh-CCCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhee
Confidence            34433 343 59999999999998777899999999999999999999987654211     000000000001000111


Q ss_pred             CCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           76 NPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        76 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .+++..+|.++|.++++++||+++++...
T Consensus       200 ~~~~~~~s~~~~~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          200 FPGGRLPSIPMVQECASANGFTVTRVQSL  228 (287)
T ss_dssp             STTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence            35677789999999999999999988765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.14  E-value=1.5e-10  Score=78.69  Aligned_cols=96  Identities=15%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +++.  .|+|++..++|+++|.  .++|++++++|+|||++++.+...++.+.   ........  ..+.....
T Consensus        92 ~d~~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~  164 (260)
T 1vl5_A           92 GDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDA---FDVFYNYV--EKERDYSH  164 (260)
T ss_dssp             CCC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHH---HHHHHHHH--HHHHCTTC
T ss_pred             ecHHhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCHH---HHHHHHHH--HHhcCccc
Confidence            56666 6663  4999999999999986  69999999999999999999987664311   11110101  11111123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .+.++.++|.++|+++||+.+++...
T Consensus       165 ~~~~~~~~~~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          165 HRAWKKSDWLKMLEEAGFELEELHCF  190 (260)
T ss_dssp             CCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred             cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence            45678999999999999998776544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.12  E-value=2.3e-10  Score=76.64  Aligned_cols=85  Identities=19%  Similarity=0.180  Sum_probs=67.4

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+..+.  .|+|++..++|++++++..++|+++++.|+|||++++.+.........+                   .
T Consensus       122 ~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-------------------~  182 (235)
T 3lcc_A          122 EDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP-------------------P  182 (235)
T ss_dssp             CCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS-------------------S
T ss_pred             CchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC-------------------C
Confidence            677773343  4999999999999988889999999999999999999886554332111                   1


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ...+.++|.++|+++||+++++....
T Consensus       183 ~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          183 YKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             CCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             ccCCHHHHHHHHHHcCCeEEEEEecC
Confidence            12678999999999999999887764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.12  E-value=4.5e-10  Score=78.19  Aligned_cols=114  Identities=17%  Similarity=0.114  Sum_probs=72.5

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hh--hhch------hcc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDH-CLKLLKIYYKSIPEDGKVIVVESILPELPETST-VS--KRNS------QLD   69 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~~--~~~~------~~~   69 (115)
                      ||+.+ +.+. .|+|++..++|++++.+ ..++++++++.|+|||++++.+...+....... +.  ....      ...
T Consensus       177 ~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  256 (305)
T 3ocj_A          177 QDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLV  256 (305)
T ss_dssp             CCGGGCCCCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHH
T ss_pred             CchhcCCccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhH
Confidence            56666 4454 49999999999997654 567999999999999999998866544322110 00  0000      000


Q ss_pred             chhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEEEEC
Q 048196           70 VLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRDFYK  115 (115)
Q Consensus        70 l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie~~~  115 (115)
                      +.......-...++.++|.++|+++||+++++.... .....+.++|
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          257 FTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             HHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             HHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence            000100001134799999999999999999888654 3444555554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.11  E-value=2.5e-10  Score=77.89  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=70.1

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++..++|++++.  .++|+++++.|+|||++++.+.......... ..   ..++..... .+.
T Consensus       118 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~---~~~~~~~~~-~~~  190 (273)
T 3bus_A          118 ADAMDLPFEDASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA-KK---EAVDAFRAG-GGV  190 (273)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH-HH---HHHHHHHHH-HTC
T ss_pred             CccccCCCCCCCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh-HH---HHHHHHHhh-cCc
Confidence            57766 5654  3999999999999875  7999999999999999999998776432211 00   011111011 135


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      +..++.++|.++++++||+++++...
T Consensus       191 ~~~~~~~~~~~~l~~aGf~~~~~~~~  216 (273)
T 3bus_A          191 LSLGGIDEYESDVRQAELVVTSTVDI  216 (273)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             cCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence            56789999999999999999887765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.11  E-value=2.2e-10  Score=79.46  Aligned_cols=114  Identities=8%  Similarity=0.081  Sum_probs=73.6

Q ss_pred             CCCCC-CCCc-ccEEEec-cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc-----hh----hh---h--
Q 048196            2 DDMFQ-NVPK-GDAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS-----TV----SK---R--   64 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~-----~~----~~---~--   64 (115)
                      ||+.+ +.+. .|+|++. .++|++++++..++|+++++.|+|||++++.....+......     ..    ..   .  
T Consensus       140 ~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  219 (299)
T 3g2m_A          140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHV  219 (299)
T ss_dssp             CBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCE
T ss_pred             CchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEE
Confidence            57776 4444 4988865 788888888899999999999999999999776543210000     00    00   0  


Q ss_pred             -----chhccchhcc----------cCCCceeCCHHHHHHHHHhCCCCeeEEEEcC------CceEEEEEEC
Q 048196           65 -----NSQLDVLMMT----------QNPSGKKRTKHEFLTLATGAGFSGTRFEWFT------CNLWVRDFYK  115 (115)
Q Consensus        65 -----~~~~~l~~~~----------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~lie~~~  115 (115)
                           .....+.+..          .....+.+|.+||.++|++|||+++++.++.      ....++|+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~  291 (299)
T 3g2m_A          220 RHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM  291 (299)
T ss_dssp             EEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred             EEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence                 0000011000          0012235799999999999999999998875      2357888753

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.09  E-value=2.6e-10  Score=76.78  Aligned_cols=96  Identities=15%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++..++|+++|.  .++|+++++.|+|||++++.+...++...   .......  +..+....+
T Consensus        76 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~  148 (239)
T 1xxl_A           76 GTAESLPFPDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDPV---LDEFVNH--LNRLRDPSH  148 (239)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSHH---HHHHHHH--HHHHHCTTC
T ss_pred             cccccCCCCCCcEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCChh---HHHHHHH--HHHhccccc
Confidence            45655 4553  4999999999999875  68999999999999999999987664311   1111111  111111123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .+.++.++|.++|+++||+.+++...
T Consensus       149 ~~~~~~~~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          149 VRESSLSEWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             CCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCCCHHHHHHHHHHCCCcEEEEEee
Confidence            45678999999999999998876554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.06  E-value=5.2e-10  Score=73.70  Aligned_cols=88  Identities=14%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+ +.+. .|+|++..++|++++++..++|+++++.|+|||++++...........        ...       ...
T Consensus        92 ~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~~-------~~~  156 (211)
T 3e23_A           92 MLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KLA-------RYY  156 (211)
T ss_dssp             CCGGGCCCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TTS-------CEE
T ss_pred             eeeccCCCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------ccc-------hhc
Confidence            45555 3223 499999999999998889999999999999999999975433221000        000       112


Q ss_pred             eeCCHHHHHHHHHhCC-CCeeEEEEc
Q 048196           80 KKRTKHEFLTLATGAG-FSGTRFEWF  104 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aG-f~~~~~~~~  104 (115)
                      ..++.++|.++|+++| |+++++...
T Consensus       157 ~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          157 NYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             CCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             cCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            3468999999999999 999987654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.06  E-value=2.9e-10  Score=75.59  Aligned_cols=100  Identities=15%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhccc--
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQ--   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~--   75 (115)
                      +|+.+ +.+.  .|+|++..++|++++. +..++|+++++.|+|||++++.+........  .... .....+.....  
T Consensus        90 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~  166 (235)
T 3sm3_A           90 ENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK--LYRK-RYLHDFPITKEEG  166 (235)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH--HHHH-HHHHHHHHHCSTT
T ss_pred             ecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH--HHHH-Hhhhhccchhhhc
Confidence            45655 4543  4999999999999864 4779999999999999999999876543211  0000 00000000000  


Q ss_pred             ------------CCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           76 ------------NPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        76 ------------~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                                  ....+.+|.++|.++|+++||+++++...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          167 SFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             EEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             ceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence                        00124679999999999999999887543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.05  E-value=6.3e-10  Score=70.94  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=65.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..++|++++.  .++++++++.|+|||++++.+.........+.                 ....++.++|.++
T Consensus        76 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  136 (170)
T 3i9f_A           76 VDFILFANSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDYMGW  136 (170)
T ss_dssp             EEEEEEESCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHHHHH
T ss_pred             eEEEEEccchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHHHHH
Confidence            4999999999999864  69999999999999999999877654322210                 1222689999999


Q ss_pred             HHhCCCCeeEEEEcCCceEEEEEE
Q 048196           91 ATGAGFSGTRFEWFTCNLWVRDFY  114 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~~~~lie~~  114 (115)
                      |+  ||+.+++.........+.+.
T Consensus       137 l~--Gf~~~~~~~~~~~~~~l~~~  158 (170)
T 3i9f_A          137 FS--NFVVEKRFNPTPYHFGLVLK  158 (170)
T ss_dssp             TT--TEEEEEEECSSTTEEEEEEE
T ss_pred             Hh--CcEEEEccCCCCceEEEEEe
Confidence            99  99999998887666666554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.03  E-value=1.3e-09  Score=72.93  Aligned_cols=93  Identities=15%  Similarity=0.062  Sum_probs=66.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++..++|++++.  .++|+++++.|+|||++++.+..........   .....+.    . ...
T Consensus       105 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---~~~~~~~----~-~~~  174 (242)
T 3l8d_A          105 GDLSSLPFENEQFEAIMAINSLEWTEEP--LRALNEIKRVLKSDGYACIAILGPTAKPREN---SYPRLYG----K-DVV  174 (242)
T ss_dssp             CBTTBCSSCTTCEEEEEEESCTTSSSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGGG---GGGGGGT----C-CCS
T ss_pred             cchhcCCCCCCCccEEEEcChHhhccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhhh---hhhhhcc----c-ccc
Confidence            56666 5553  4999999999999875  6899999999999999999886444321111   1111111    1 123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...++.+++.++++++||++++...+
T Consensus       175 ~~~~~~~~~~~~l~~~Gf~~~~~~~~  200 (242)
T 3l8d_A          175 CNTMMPWEFEQLVKEQGFKVVDGIGV  200 (242)
T ss_dssp             SCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEeecc
Confidence            45578999999999999999987654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.03  E-value=1.3e-09  Score=76.10  Aligned_cols=94  Identities=16%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc----hhh-hhchhccchhcccCCCceeCCHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS----TVS-KRNSQLDVLMMTQNPSGKKRTKH   85 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~g~~rt~~   85 (115)
                      .|+|++..++|++++++..++|+++++.|+|||++++.+...+......    ... ......+.......+++..+|.+
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  235 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE  235 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence            5999999999999987789999999999999999999998766431100    000 00000011100112467778999


Q ss_pred             HHHHHHHhCCCCeeEEEEc
Q 048196           86 EFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~  104 (115)
                      +|.++++++||+++++...
T Consensus       236 ~~~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          236 MMVEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             HHHHHHHHTTCBCCCCEEC
T ss_pred             HHHHHHHhCCCEEEEEEec
Confidence            9999999999999887654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.99  E-value=3.9e-09  Score=70.54  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=68.2

Q ss_pred             CCCCC-CCCc-ccEEEecc-ccccC-ChHHHHHHHHHHHhhCCCCCEEEEEeeecC-------CC-----CCC-c-hhh-
Q 048196            2 DDMFQ-NVPK-GDAIFMKW-ILHNW-SDDHCLKLLKIYYKSIPEDGKVIVVESILP-------EL-----PET-S-TVS-   62 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~-vlh~~-~d~~~~~iL~~~~~aL~pgg~lii~d~~~~-------~~-----~~~-~-~~~-   62 (115)
                      +|+.+ +.+. .|+|++.. ++|++ +.++..++|+++++.|+|||++++.-....       +.     ... . .+. 
T Consensus        86 ~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (243)
T 3d2l_A           86 QDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFA  165 (243)
T ss_dssp             CCGGGCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEE
T ss_pred             cChhhcCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEe
Confidence            45555 4444 49999986 99998 556789999999999999999987321110       00     000 0 000 


Q ss_pred             -----hhchhccchhcccCCC-----------ceeCCHHHHHHHHHhCCCCeeEEEEcC--------CceEEEEEEC
Q 048196           63 -----KRNSQLDVLMMTQNPS-----------GKKRTKHEFLTLATGAGFSGTRFEWFT--------CNLWVRDFYK  115 (115)
Q Consensus        63 -----~~~~~~~l~~~~~~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~--------~~~~lie~~~  115 (115)
                           ......++.+.....+           .+.+|.+++.++|++|||+++++....        ....++.++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K  242 (243)
T 3d2l_A          166 DPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK  242 (243)
T ss_dssp             EECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred             ecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence                 0000011111111111           145799999999999999999887541        2345666664

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.98  E-value=1.6e-09  Score=75.56  Aligned_cols=93  Identities=10%  Similarity=0.047  Sum_probs=67.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +++.  .|+|++..++|+++   ..++|+++++.|+|||++++.+....+...... . ....++-..     .
T Consensus       174 ~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~-~~~~~~~~~-----~  243 (312)
T 3vc1_A          174 CNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-K-WVSQINAHF-----E  243 (312)
T ss_dssp             CCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-H-HHHHHHHHH-----T
T ss_pred             CChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-H-HHHHHHhhh-----c
Confidence            67777 5553  49999999999994   689999999999999999999987776432110 0 001111111     1


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...++.++|.++|+++||+++++..+
T Consensus       244 ~~~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          244 CNIHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             CCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence            13578999999999999999888765

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.98  E-value=2.6e-09  Score=71.70  Aligned_cols=84  Identities=13%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..++|++++++..++|+++++.|+|||++++........     .. .   .+.. . ...+....+.++|.++
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~-~---~~~~-~-~~~~~~~~~~~~l~~~  170 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL-----YS-L---INFY-I-DPTHKKPVHPETLKFI  170 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH-----HH-H---HHHT-T-STTCCSCCCHHHHHHH
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh-----HH-H---HHHh-c-CccccccCCHHHHHHH
Confidence            499999999999998888999999999999999999976542211     11 0   1111 1 1123456789999999


Q ss_pred             HHhCCCCeeEEEEcC
Q 048196           91 ATGAGFSGTRFEWFT  105 (115)
Q Consensus        91 l~~aGf~~~~~~~~~  105 (115)
                      ++++||+++++....
T Consensus       171 l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          171 LEYLGFRDVKIEFFE  185 (240)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             HHHCCCeEEEEEEec
Confidence            999999998887654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.97  E-value=1.6e-09  Score=72.47  Aligned_cols=114  Identities=11%  Similarity=-0.013  Sum_probs=69.0

Q ss_pred             CCCCC-CCCc-ccEEEecc-ccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeeecCCC----CCCc----------hhhh
Q 048196            2 DDMFQ-NVPK-GDAIFMKW-ILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESILPEL----PETS----------TVSK   63 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~-vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~~~~~----~~~~----------~~~~   63 (115)
                      +|+.+ +.+. .|+|++.. ++|++++ ++..++|+++++.|+|||++++.-......    +...          ....
T Consensus        91 ~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (246)
T 1y8c_A           91 QDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWEN  170 (246)
T ss_dssp             CCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEE
T ss_pred             cccccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEec
Confidence            56655 4443 49999998 9999954 678999999999999999998733211000    0000          0000


Q ss_pred             ----hchhccchhcccC----------CCceeCCHHHHHHHHHhCCCCeeEEEEc--------CCceEEEEEEC
Q 048196           64 ----RNSQLDVLMMTQN----------PSGKKRTKHEFLTLATGAGFSGTRFEWF--------TCNLWVRDFYK  115 (115)
Q Consensus        64 ----~~~~~~l~~~~~~----------~~g~~rt~~e~~~ll~~aGf~~~~~~~~--------~~~~~lie~~~  115 (115)
                          ......+.++...          ...+.+|.++|.++|+++||+++++...        .....++.++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK  244 (246)
T 1y8c_A          171 QFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             ccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence                0000111111100          0124569999999999999999988654        12445666654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.97  E-value=1.4e-09  Score=71.79  Aligned_cols=84  Identities=20%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++..++| +++  ..++|+++++.|+|||++++.+....                         
T Consensus       104 ~d~~~~~~~~~~fD~v~~~~~l~-~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~-------------------------  155 (215)
T 2zfu_A          104 CDMAQVPLEDESVDVAVFCLSLM-GTN--IRDFLEEANRVLKPGGLLKVAEVSSR-------------------------  155 (215)
T ss_dssp             SCTTSCSCCTTCEEEEEEESCCC-SSC--HHHHHHHHHHHEEEEEEEEEEECGGG-------------------------
T ss_pred             eccccCCCCCCCEeEEEEehhcc-ccC--HHHHHHHHHHhCCCCeEEEEEEcCCC-------------------------
Confidence            56666 5553  49999999998 444  57999999999999999999863210                         


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                        ..+.++|.++++++||++++.....+...++.++|
T Consensus       156 --~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k  190 (215)
T 2zfu_A          156 --FEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQK  190 (215)
T ss_dssp             --CSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEE
T ss_pred             --CCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEe
Confidence              02789999999999999988766566677777664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.97  E-value=2.2e-09  Score=72.42  Aligned_cols=93  Identities=11%  Similarity=0.020  Sum_probs=67.0

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||+.+ +.+. .|+|++..++|++++  ..++|+++++.|+|||++++.+......+....   ....+    .. ....
T Consensus        93 ~d~~~~~~~~~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~---~~~~~----~~-~~~~  162 (256)
T 1nkv_A           93 NDAAGYVANEKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE---IAQAC----GV-SSTS  162 (256)
T ss_dssp             SCCTTCCCSSCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH---HHHTT----TC-SCGG
T ss_pred             CChHhCCcCCCCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHH---HHHHH----hc-cccc
Confidence            56666 3333 499999999999986  479999999999999999999987665433211   11101    00 1123


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ..++.++|.++|+++||+.+++...
T Consensus       163 ~~~~~~~~~~~l~~aGf~~~~~~~~  187 (256)
T 1nkv_A          163 DFLTLPGLVGAFDDLGYDVVEMVLA  187 (256)
T ss_dssp             GSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred             ccCCHHHHHHHHHHCCCeeEEEEeC
Confidence            5578999999999999999887543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.97  E-value=1.2e-09  Score=75.53  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHH
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLT   89 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~   89 (115)
                      ..|+|++..++|+++|++..++|++++++|+|||++++.+...+.   .....   ...+...... ...+.||.+||.+
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~~~---~~~~~~~~~~-~~~~~~s~~ei~~  229 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPAQQ---KLARITRENL-GEGWARTPEEIER  229 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHHHH---HHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHHHH---HHHHHHHhcC-CCCccCCHHHHHH
Confidence            359999999999999988899999999999999999999977542   11111   1112111111 1456799999999


Q ss_pred             HHHhCCCCeeE
Q 048196           90 LATGAGFSGTR  100 (115)
Q Consensus        90 ll~~aGf~~~~  100 (115)
                      +|  +||++++
T Consensus       230 ~l--~G~~l~~  238 (274)
T 2qe6_A          230 QF--GDFELVE  238 (274)
T ss_dssp             TT--TTCEECT
T ss_pred             Hh--CCCeEcc
Confidence            99  5998765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.96  E-value=7.5e-10  Score=75.68  Aligned_cols=98  Identities=20%  Similarity=0.273  Sum_probs=66.3

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC---CCCchhhh-hchhccchhcc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL---PETSTVSK-RNSQLDVLMMT   74 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~---~~~~~~~~-~~~~~~l~~~~   74 (115)
                      +|+.+ +.+.  .|+|++++++|+++|.  ..+|+++++.|+|||.+++.+......   +..+.... ......  ...
T Consensus        94 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  169 (276)
T 3mgg_A           94 ANIFSLPFEDSSFDHIFVCFVLEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR--VQA  169 (276)
T ss_dssp             CCGGGCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH--HHH
T ss_pred             cccccCCCCCCCeeEEEEechhhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH--HHH
Confidence            46665 4443  4999999999999986  489999999999999999998644221   11111110 011111  111


Q ss_pred             cCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           75 QNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      . .++..++..+|.++|++|||+.+++...
T Consensus       170 ~-~~~~~~~~~~l~~~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          170 Y-MKGNSLVGRQIYPLLQESGFEKIRVEPR  198 (276)
T ss_dssp             H-TTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred             h-cCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence            1 2455677889999999999999887654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.96  E-value=1.7e-09  Score=72.22  Aligned_cols=101  Identities=15%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHH-hhCCCCCEEEEEeeecCCCCCCch--hhhhchhccch-hccc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYY-KSIPEDGKVIVVESILPELPETST--VSKRNSQLDVL-MMTQ   75 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~-~aL~pgg~lii~d~~~~~~~~~~~--~~~~~~~~~l~-~~~~   75 (115)
                      +|+.+..+.  .|+|++.+++|+++|.  .++|++++ +.|+|||++++.++..........  .........+. ....
T Consensus        93 ~d~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
T 2p7i_A           93 SRFEDAQLPRRYDNIVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA  170 (250)
T ss_dssp             SCGGGCCCSSCEEEEEEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH
T ss_pred             ccHHHcCcCCcccEEEEhhHHHhhcCH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccccc
Confidence            455443333  4999999999999886  69999999 999999999998754331100000  00000000000 0001


Q ss_pred             CCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           76 NPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        76 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ....+.+|.++|.++|+++||+++++...
T Consensus       171 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  199 (250)
T 2p7i_A          171 HGHRCTYALDTLERDASRAGLQVTYRSGI  199 (250)
T ss_dssp             TTCCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccccccCCHHHHHHHHHHCCCeEEEEeee
Confidence            12345689999999999999999887643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.95  E-value=2.2e-09  Score=77.17  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=62.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..++|+++|.  .++|+++++.|+|||++++.+...+...... ..     ....... ...+...+.++|.++
T Consensus       167 fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~l  237 (383)
T 4fsd_A          167 VDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSEA-AQ-----QDPILYG-ECLGGALYLEDFRRL  237 (383)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCHH-HH-----HCHHHHH-TTCTTCCBHHHHHHH
T ss_pred             EEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCHh-Hh-----hhHHHhh-cccccCCCHHHHHHH
Confidence            4999999999999884  7999999999999999999998766432211 10     0111111 123456788999999


Q ss_pred             HHhCCCCeeEEEE
Q 048196           91 ATGAGFSGTRFEW  103 (115)
Q Consensus        91 l~~aGf~~~~~~~  103 (115)
                      |+++||+.+++..
T Consensus       238 l~~aGF~~v~~~~  250 (383)
T 4fsd_A          238 VAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHTTCCCEEEEE
T ss_pred             HHHCCCceEEEEe
Confidence            9999999886644

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.93  E-value=5.9e-09  Score=72.30  Aligned_cols=95  Identities=16%  Similarity=0.315  Sum_probs=67.3

Q ss_pred             ccEEEeccccccCCh-------HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhh-----hchhccchhcccCCC
Q 048196           11 GDAIFMKWILHNWSD-------DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSK-----RNSQLDVLMMTQNPS   78 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~   78 (115)
                      .|+|++..++|+++|       +...++++++++.|+|||++++.+...++.........     .....+.......++
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  217 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG  217 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence            599999999999955       56789999999999999999999987664321000000     000001111112357


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      +..++.+++.++++++||+++++...+
T Consensus       218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          218 GRLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            788999999999999999999887654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.91  E-value=4.3e-09  Score=69.82  Aligned_cols=95  Identities=15%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++..++|++++.  .++|+++++.|+|||++++.+......     ............. ....
T Consensus        91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~-~~~~  162 (219)
T 1vlm_A           91 GTAENLPLKDESFDFALMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKEKSV-FYKN  162 (219)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTTC-C-CSTT
T ss_pred             cccccCCCCCCCeeEEEEcchHhhccCH--HHHHHHHHHHcCCCcEEEEEEeCCccH-----HHHHHHHHhcCcc-hhcc
Confidence            45555 4543  4999999999999875  689999999999999999987643211     1111000000000 1123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...++.++|.++|+++||+++++...
T Consensus       163 ~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          163 ARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHCCCeEEEEecc
Confidence            45679999999999999999887665

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.90  E-value=3e-09  Score=71.84  Aligned_cols=92  Identities=12%  Similarity=0.025  Sum_probs=66.3

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++..++|+++   ..++|+++++.|+|||++++.+...........   ....+.   ..   .
T Consensus       103 ~d~~~~~~~~~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~---~~~~~~---~~---~  170 (257)
T 3f4k_A          103 GSMDNLPFQNEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAE---IEDFWM---DA---Y  170 (257)
T ss_dssp             CCTTSCSSCTTCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH---HHHHHH---HH---C
T ss_pred             CChhhCCCCCCCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHH---HHHHHH---Hh---C
Confidence            56765 5553  49999999999994   468999999999999999999986554332211   111111   00   1


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ...+|.++|.++|+++||+++++...+
T Consensus       171 ~~~~~~~~~~~~l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          171 PEISVIPTCIDKMERAGYTPTAHFILP  197 (257)
T ss_dssp             TTCCBHHHHHHHHHHTTEEEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEEEECC
Confidence            225689999999999999999887664

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.89  E-value=6.7e-09  Score=69.39  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC--CCCCchh----h----hhchhc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE--LPETSTV----S----KRNSQL   68 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~--~~~~~~~----~----~~~~~~   68 (115)
                      +|+.+ +.+.  .|+|++..++|++++  ..++|+++++.|+|||++++.......  .......    .    .....+
T Consensus        96 ~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (243)
T 3bkw_A           96 ADLDKLHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYL  173 (243)
T ss_dssp             CCGGGCCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTT
T ss_pred             cChhhccCCCCCceEEEEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccc
Confidence            46655 4543  499999999999986  479999999999999999997753210  0000000    0    000000


Q ss_pred             -----cchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           69 -----DVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        69 -----~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                           ....+........+|.++|.++|++|||+++++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          174 VEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             CCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             cccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence                 000000001233479999999999999999988764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.89  E-value=3.3e-09  Score=69.47  Aligned_cols=99  Identities=5%  Similarity=-0.102  Sum_probs=66.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhch-hccchhcccCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNS-QLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~-~~~l~~~~~~~   77 (115)
                      +|+.+ +.+.  .|+|++..++|+++.++..++++++++.|+|||++++.+...++.+..... .... .+.........
T Consensus        78 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  156 (209)
T 2p8j_A           78 GDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGE-KIGEGEFLQLERGEKV  156 (209)
T ss_dssp             CCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSE-EEETTEEEECC-CCCE
T ss_pred             CchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchh-hhccccceeccCCCce
Confidence            56666 5553  499999999999998889999999999999999999998876554321100 0000 01000000001


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEE
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                      .+..++.+|+.++|+++||...+.
T Consensus       157 ~~~~~~~~e~~~~~~~~g~~~~~~  180 (209)
T 2p8j_A          157 IHSYVSLEEADKYFKDMKVLFKED  180 (209)
T ss_dssp             EEEEECHHHHHHTTTTSEEEEEEE
T ss_pred             eEEecCHHHHHHHHhhcCceeeee
Confidence            235679999999999999876654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.89  E-value=5.6e-09  Score=71.36  Aligned_cols=80  Identities=13%  Similarity=0.001  Sum_probs=57.7

Q ss_pred             ccEEEeccccccC-C-hHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNW-S-DDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~-~-d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|+++.+||+. + .++..++|+++++.|+|||++++.+......     +   .  .. . ..  ......|.++|.
T Consensus       157 fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~---~--~g-~-~~--~~~~~~~~~~l~  222 (263)
T 2a14_A          157 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y---M--VG-K-RE--FSCVALEKGEVE  222 (263)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E---E--ET-T-EE--EECCCCCHHHHH
T ss_pred             CCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c---e--eC-C-eE--eeccccCHHHHH
Confidence            5999999999985 3 3567899999999999999999987542210     0   0  00 0 00  011235899999


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      ++|+++||+++++...
T Consensus       223 ~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          223 QAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHCCCEEEEEeec
Confidence            9999999999887654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.88  E-value=3.9e-09  Score=71.23  Aligned_cols=100  Identities=11%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC------------CCCCCchhhhhch
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP------------ELPETSTVSKRNS   66 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~------------~~~~~~~~~~~~~   66 (115)
                      +|+.+ +.+.  .|+|++..++|++++  ..++|+++++.|+|||++++......            ......... ...
T Consensus        97 ~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  173 (253)
T 3g5l_A           97 KAIEDIAIEPDAYNVVLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWP-VDR  173 (253)
T ss_dssp             CCGGGCCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEE-ECC
T ss_pred             cchhhCCCCCCCeEEEEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEE-ecc
Confidence            56655 5553  499999999999976  47999999999999999999754211            000000000 000


Q ss_pred             hcc-----chhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           67 QLD-----VLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        67 ~~~-----l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .++     ............+|.++|.++|++|||+++++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          174 YFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             TTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred             ccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence            000     00000000122359999999999999999988754

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.88  E-value=3.7e-09  Score=67.85  Aligned_cols=64  Identities=14%  Similarity=0.155  Sum_probs=50.7

Q ss_pred             ccEEEeccccccC-ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHH
Q 048196           11 GDAIFMKWILHNW-SDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLT   89 (115)
Q Consensus        11 ~D~v~~~~vlh~~-~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~   89 (115)
                      .|+|++.+++|++ +|.  .++|+++++.|+|||++++.+........                    ....++.++|.+
T Consensus        64 fD~V~~~~~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~  121 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVDN--------------------NSKVKTASKLCS  121 (176)
T ss_dssp             EEEEEECCSTTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSCS--------------------SSSSCCHHHHHH
T ss_pred             EeEEEECChhhhcccCH--HHHHHHHHHHCCCCEEEEEEccccccccc--------------------ccccCCHHHHHH
Confidence            4999999999999 664  78999999999999999996654332100                    112367899999


Q ss_pred             HHHhCCC
Q 048196           90 LATGAGF   96 (115)
Q Consensus        90 ll~~aGf   96 (115)
                      +|+++||
T Consensus       122 ~l~~aGf  128 (176)
T 2ld4_A          122 ALTLSGL  128 (176)
T ss_dssp             HHHHTTC
T ss_pred             HHHHCCC
Confidence            9999999

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.85  E-value=5e-09  Score=71.38  Aligned_cols=92  Identities=14%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++..++|+++   ..++|+++++.|+|||++++.+...........   ....+.   -   ..
T Consensus       103 ~d~~~~~~~~~~fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~---~---~~  170 (267)
T 3kkz_A          103 GSMDDLPFRNEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE---INDFWM---D---AY  170 (267)
T ss_dssp             CCTTSCCCCTTCEEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH---HHHHHH---H---HC
T ss_pred             cChhhCCCCCCCEEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH---HHHHHH---H---hC
Confidence            56666 5553  49999999999993   368999999999999999999987654432211   111110   0   01


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ...++.+++.++++++||+++++..++
T Consensus       171 ~~~~~~~~~~~~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          171 PEIDTIPNQVAKIHKAGYLPVATFILP  197 (267)
T ss_dssp             TTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence            234688999999999999999887764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.84  E-value=9e-09  Score=67.87  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhccc-----CCCceeCCHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQ-----NPSGKKRTKH   85 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~g~~rt~~   85 (115)
                      .|+|++..++| +++  ..++|+++++.|+|||++++.+.............   ..........     ......+|.+
T Consensus       117 fD~v~~~~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  190 (227)
T 3e8s_A          117 YDLICANFALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLA  190 (227)
T ss_dssp             EEEEEEESCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHH
T ss_pred             ccEEEECchhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHH
Confidence            49999999999 555  46999999999999999999887654432211000   0000000000     0122457999


Q ss_pred             HHHHHHHhCCCCeeEEEEc
Q 048196           86 EFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~  104 (115)
                      +|.++|+++||+++++...
T Consensus       191 ~~~~~l~~aGf~~~~~~~~  209 (227)
T 3e8s_A          191 SWLNALDMAGLRLVSLQEP  209 (227)
T ss_dssp             HHHHHHHHTTEEEEEEECC
T ss_pred             HHHHHHHHcCCeEEEEecC
Confidence            9999999999999987653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.82  E-value=1.2e-08  Score=66.10  Aligned_cols=84  Identities=11%  Similarity=0.042  Sum_probs=62.7

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+ +.+. .|+|++..++|++++++..++++++++.|+|||++++.+....+....+                ....
T Consensus        87 ~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~  150 (199)
T 2xvm_A           87 VDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFP  150 (199)
T ss_dssp             CCGGGCCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCS
T ss_pred             cchhhCCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCC
Confidence            45555 3333 4999999999999988889999999999999999999887765432110                0122


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      ..++.+++.++|++  |++++...
T Consensus       151 ~~~~~~~l~~~~~~--f~~~~~~~  172 (199)
T 2xvm_A          151 FAFKEGELRRYYEG--WERVKYNE  172 (199)
T ss_dssp             CCBCTTHHHHHTTT--SEEEEEEC
T ss_pred             CccCHHHHHHHhcC--CeEEEecc
Confidence            34678899999986  98877643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.80  E-value=3.2e-08  Score=63.66  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CCCCC-CCCc--ccEEEec-cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            2 DDMFQ-NVPK--GDAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      +|+.+ +++.  .|+|++. .++|++++++..++|+++++.|+|||++++....                          
T Consensus        96 ~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~--------------------------  149 (195)
T 3cgg_A           96 GDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA--------------------------  149 (195)
T ss_dssp             CCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET--------------------------
T ss_pred             cccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC--------------------------
Confidence            56666 5553  4999998 8999999888999999999999999999985321                          


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                       ...++.++|.++++++||+++++...
T Consensus       150 -~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          150 -GRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             -TSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             -CCCcCHHHHHHHHHHcCCEEeeeecc
Confidence             11157889999999999999877544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.80  E-value=3.2e-09  Score=72.99  Aligned_cols=102  Identities=10%  Similarity=-0.010  Sum_probs=65.3

Q ss_pred             CCCCC-C-CCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch----hhhhchhccchhc
Q 048196            2 DDMFQ-N-VPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST----VSKRNSQLDVLMM   73 (115)
Q Consensus         2 gd~~~-~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~----~~~~~~~~~l~~~   73 (115)
                      ||+.+ + .+.  .|+|++..++|++++.  .++|+++++.|+|||++++.+...........    .............
T Consensus       124 ~d~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (285)
T 4htf_A          124 CAAQDVASHLETPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKK  201 (285)
T ss_dssp             SCGGGTGGGCSSCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC--
T ss_pred             cCHHHhhhhcCCCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccccc
Confidence            45555 2 333  4999999999999876  68999999999999999998865432100000    0000000000000


Q ss_pred             ccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           74 TQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        74 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      ........++.++|.++|+++||+++++..+.
T Consensus       202 ~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          202 RTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             --CCCSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred             ccCCCCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence            00012355789999999999999999887764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.79  E-value=1.1e-08  Score=70.66  Aligned_cols=83  Identities=14%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++++++|+++|.  .+.|+++++.|+|||++++.+...+    .. .......+. ..+........++.++|.++
T Consensus       136 fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~----~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  207 (292)
T 2aot_A          136 WDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS----SG-WDKLWKKYG-SRFPQDDLCQYITSDDLTQM  207 (292)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT----SH-HHHHHHHHG-GGSCCCTTCCCCCHHHHHHH
T ss_pred             eeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCC----cc-HHHHHHHHH-HhccCCCcccCCCHHHHHHH
Confidence            4999999999999985  6899999999999999999864321    11 111100000 00000012345789999999


Q ss_pred             HHhCCCCeeEE
Q 048196           91 ATGAGFSGTRF  101 (115)
Q Consensus        91 l~~aGf~~~~~  101 (115)
                      |+++||+.+..
T Consensus       208 l~~aGf~~~~~  218 (292)
T 2aot_A          208 LDNLGLKYECY  218 (292)
T ss_dssp             HHHHTCCEEEE
T ss_pred             HHHCCCceEEE
Confidence            99999998763

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.79  E-value=9.8e-09  Score=67.68  Aligned_cols=84  Identities=8%  Similarity=0.048  Sum_probs=60.7

Q ss_pred             CCCCC-CCC--c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            2 DDMFQ-NVP--K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      ||+++ +.+  . .|+|+.+.++|++++++..++++++++.|+|||+++++....+....                  ..
T Consensus        89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~------------------~~  150 (203)
T 1pjz_A           89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL------------------EG  150 (203)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS------------------SS
T ss_pred             CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc------------------CC
Confidence            57776 433  2 49999999999999988889999999999999996555433321100                  00


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .....+.+|+.+++++ ||++..+...
T Consensus       151 ~~~~~~~~el~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          151 PPFSVPQTWLHRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             CCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred             CCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence            1112578999999998 9998776654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.77  E-value=9.9e-09  Score=67.78  Aligned_cols=88  Identities=13%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhh-hchhccc---hhcccCCCceeCCHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSK-RNSQLDV---LMMTQNPSGKKRTKHE   86 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~-~~~~~~l---~~~~~~~~g~~rt~~e   86 (115)
                      .|+|++..++|++++.  .++|+++++.|+|||.+++.........   .... ....+..   .... ....+.+|.++
T Consensus        94 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  167 (230)
T 3cc8_A           94 FDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHIS---VLAPLLAGNWTYTEYGLLD-KTHIRFFTFNE  167 (230)
T ss_dssp             EEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSHH---HHHHHHTTCCCCBSSSTTB-TTCCCCCCHHH
T ss_pred             cCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchHH---HHHHHhcCCceeccCCCCC-cceEEEecHHH
Confidence            3999999999999886  5999999999999999999765432210   0000 0000000   0000 11235579999


Q ss_pred             HHHHHHhCCCCeeEEEEc
Q 048196           87 FLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        87 ~~~ll~~aGf~~~~~~~~  104 (115)
                      |.++|+++||+++++...
T Consensus       168 ~~~~l~~~Gf~~~~~~~~  185 (230)
T 3cc8_A          168 MLRMFLKAGYSISKVDRV  185 (230)
T ss_dssp             HHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHcCCeEEEEEec
Confidence            999999999999887765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.76  E-value=3.4e-08  Score=67.78  Aligned_cols=103  Identities=10%  Similarity=-0.007  Sum_probs=66.3

Q ss_pred             CCCCC-CC-Cc--ccEEEecccccc--CChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-------CCc-hh------
Q 048196            2 DDMFQ-NV-PK--GDAIFMKWILHN--WSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP-------ETS-TV------   61 (115)
Q Consensus         2 gd~~~-~~-p~--~D~v~~~~vlh~--~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~-------~~~-~~------   61 (115)
                      +|+.+ +. +.  .|+|++..++|+  .+.++..++|+++++.|+|||++++..+......       -.. ..      
T Consensus       121 ~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (298)
T 1ri5_A          121 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEK  200 (298)
T ss_dssp             SCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCC
T ss_pred             CCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCc
Confidence            56666 55 33  499999999998  6777889999999999999999999875432100       000 00      


Q ss_pred             ----hh-hchhccchh--cccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           62 ----SK-RNSQLDVLM--MTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        62 ----~~-~~~~~~l~~--~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                          .. ....+.+..  .......+.++.++|.++++++||+++++...
T Consensus       201 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          201 MEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             CSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             cccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence                00 000011000  00001134568999999999999999888765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.75  E-value=4e-08  Score=66.38  Aligned_cols=81  Identities=12%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             ccEEEeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSD--DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++..++|+.++  ++..++|+++++.|+|||++++.+.....     .       +...-..  ......+.++|.
T Consensus       158 fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~-------~~~~~~~--~~~~~~~~~~~~  223 (265)
T 2i62_A          158 ADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----Y-------YMIGEQK--FSSLPLGWETVR  223 (265)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----E-------EEETTEE--EECCCCCHHHHH
T ss_pred             ccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----e-------EEcCCcc--ccccccCHHHHH
Confidence            499999999995543  36789999999999999999998843221     0       0000000  012235789999


Q ss_pred             HHHHhCCCCeeEEEEcC
Q 048196           89 TLATGAGFSGTRFEWFT  105 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~~  105 (115)
                      ++|+++||+++++....
T Consensus       224 ~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          224 DAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             HHHHHTTCEEEEEEEEC
T ss_pred             HHHHHCCCEEEEEEEec
Confidence            99999999999887653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.74  E-value=8.9e-09  Score=70.95  Aligned_cols=98  Identities=11%  Similarity=0.094  Sum_probs=63.6

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec-----C---CCCCCchh---hhhchhc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL-----P---ELPETSTV---SKRNSQL   68 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~-----~---~~~~~~~~---~~~~~~~   68 (115)
                      +|+.+ +.+. .|+|++..++|+++|.  .++|+++++.|+|||.+++.++..     .   ++...+..   ......+
T Consensus        79 ~d~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (284)
T 3gu3_A           79 GDATEIELNDKYDIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLF  156 (284)
T ss_dssp             SCTTTCCCSSCEEEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHH
T ss_pred             cchhhcCcCCCeeEEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHH
Confidence            56666 4444 4999999999999986  699999999999999999998651     1   11111100   0011111


Q ss_pred             cchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           69 DVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        69 ~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      .-... . .+....+..++.++|++|||+.+++..
T Consensus       157 ~~~~~-~-~~~~~~~~~~l~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          157 ESDTQ-R-NGKDGNIGMKIPIYLSELGVKNIECRV  189 (284)
T ss_dssp             HHHHH-H-TCCCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred             HHHhh-h-hcccccHHHHHHHHHHHcCCCeEEEEE
Confidence            10011 1 133345667999999999999887643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.74  E-value=3.5e-08  Score=67.12  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=63.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++.+++|+++|.  .++|+++++.|+ ||++++.+...+..... ..   ...+.. +.. ...
T Consensus        83 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~---~~~~~~-~~~-~~~  153 (261)
T 3ege_A           83 GYAENLALPDKSVDGVISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WL---YDYFPF-LWE-DAL  153 (261)
T ss_dssp             CCTTSCCSCTTCBSEEEEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GG---GGTCHH-HHH-HHH
T ss_pred             CchhhCCCCCCCEeEEEEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HH---HHHHHH-Hhh-hhh
Confidence            57766 5553  4999999999999774  799999999999 99999999754432211 00   000000 010 012


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...++.+++. +|++|||+.+++...
T Consensus       154 ~~~~~~~~~~-~l~~aGF~~v~~~~~  178 (261)
T 3ege_A          154 RFLPLDEQIN-LLQENTKRRVEAIPF  178 (261)
T ss_dssp             TSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred             hhCCCHHHHH-HHHHcCCCceeEEEe
Confidence            3345677889 999999999888765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=1.4e-08  Score=69.58  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhc---cchhcccC
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQL---DVLMMTQN   76 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~---~l~~~~~~   76 (115)
                      +|+.+ +.+. .|+|++..++|+++|.  .++|+++++.|+|||++++........  ..........+   ........
T Consensus       107 ~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  182 (279)
T 3ccf_A          107 ADARNFRVDKPLDAVFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQAL  182 (279)
T ss_dssp             CCTTTCCCSSCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGG
T ss_pred             CChhhCCcCCCcCEEEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCc
Confidence            56655 4443 4999999999999875  689999999999999999876543221  11000000000   00000000


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .....++.++|.++|+++||+.+++...
T Consensus       183 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          183 NPWYFPSIGEYVNILEKQGFDVTYAALF  210 (279)
T ss_dssp             CCCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence            1123568999999999999999876544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.70  E-value=1.7e-08  Score=68.14  Aligned_cols=96  Identities=11%  Similarity=0.029  Sum_probs=60.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCc---hhhhhchhccchhccc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETS---TVSKRNSQLDVLMMTQ   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~---~~~~~~~~~~l~~~~~   75 (115)
                      +|+.+ +++.  .|+|++..++|+++|.  .++|+++++.|+|||++++. ...++  ..+   ............-...
T Consensus        93 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~  167 (263)
T 2yqz_A           93 ADARAIPLPDESVHGVIVVHLWHLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPV  167 (263)
T ss_dssp             SCTTSCCSCTTCEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCC
T ss_pred             cccccCCCCCCCeeEEEECCchhhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCc
Confidence            56655 5554  4999999999999874  68999999999999999987 22221  111   0000001010000000


Q ss_pred             CCCceeCCHHHHHHHHHhCCCCeeEEE
Q 048196           76 NPSGKKRTKHEFLTLATGAGFSGTRFE  102 (115)
Q Consensus        76 ~~~g~~rt~~e~~~ll~~aGf~~~~~~  102 (115)
                      ......++.++|.++|+++||+.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~  194 (263)
T 2yqz_A          168 ERGLHAKRLKEVEEALRRLGLKPRTRE  194 (263)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             ccccccCCHHHHHHHHHHcCCCcceEE
Confidence            002235678899999999999987653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.68  E-value=8.1e-08  Score=65.40  Aligned_cols=91  Identities=11%  Similarity=0.074  Sum_probs=60.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchh--cc--cCCC-ceeCCH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLM--MT--QNPS-GKKRTK   84 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~--~~--~~~~-g~~rt~   84 (115)
                      .|+|++..++|++++.+  .+++.++..++|||++++.+...+...... .... ........  ..  ...+ ...+|.
T Consensus       123 fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (275)
T 3bkx_A          123 FDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIAPSDVANIRTLITP  199 (275)
T ss_dssp             CSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHSCCTTCSCCCCCCH
T ss_pred             EEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhccccccccccccCCH
Confidence            49999999999999875  477777777888999999998776543211 0000 00000000  00  0011 245799


Q ss_pred             HHHHHHHHhCCCCeeEEEEc
Q 048196           85 HEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        85 ~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ++|.++++++||+++++..+
T Consensus       200 ~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          200 DTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHHHHTCEEEECCCB
T ss_pred             HHHHHHHHHCCCeeEEEEEe
Confidence            99999999999999877654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.66  E-value=1.2e-07  Score=62.56  Aligned_cols=81  Identities=7%  Similarity=0.033  Sum_probs=53.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH--
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL--   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~--   88 (115)
                      .|+|++..++|++++++..++|+++++.|+|||.+++........       .+....... ..........|.+++.  
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~  174 (217)
T 3jwh_A          103 YDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFANLPAGK-LRHKDHRFEWTRSQFQNW  174 (217)
T ss_dssp             CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHHHHH
T ss_pred             cCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhccccccc-ccccccccccCHHHHHHH
Confidence            499999999999999988999999999999999777655421100       000000000 0001133446889998  


Q ss_pred             --HHHHhCCCCee
Q 048196           89 --TLATGAGFSGT   99 (115)
Q Consensus        89 --~ll~~aGf~~~   99 (115)
                        ++++++||++.
T Consensus       175 ~~~~~~~~Gf~v~  187 (217)
T 3jwh_A          175 ANKITERFAYNVQ  187 (217)
T ss_dssp             HHHHHHHSSEEEE
T ss_pred             HHHHHHHcCceEE
Confidence              88889999774

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.66  E-value=1.2e-07  Score=62.53  Aligned_cols=91  Identities=10%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             CCCCC-CCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.. +.+  ..|+|++..++|++++++..++|+++++.|+|||.+++.........-.       ........ ....
T Consensus        91 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~-~~~~  162 (219)
T 3jwg_A           91 SSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLR-HRDH  162 (219)
T ss_dssp             CCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----G-GGCC
T ss_pred             CcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCccccc-ccCc
Confidence            45544 333  2499999999999999988999999999999999665544321111000       00000000 0112


Q ss_pred             ceeCCHHHHH----HHHHhCCCCeeE
Q 048196           79 GKKRTKHEFL----TLATGAGFSGTR  100 (115)
Q Consensus        79 g~~rt~~e~~----~ll~~aGf~~~~  100 (115)
                      ....|.+++.    ++++++||++..
T Consensus       163 ~~~~~~~~l~~~~~~l~~~~Gf~v~~  188 (219)
T 3jwg_A          163 RFEWTRKEFQTWAVKVAEKYGYSVRF  188 (219)
T ss_dssp             TTSBCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             eeeecHHHHHHHHHHHHHHCCcEEEE
Confidence            3446888998    788899996643

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.65  E-value=3.8e-08  Score=67.82  Aligned_cols=80  Identities=11%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             ccEEEeccccccCChH--HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSDD--HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++..++|+.+++  +..++|+++++.|+|||++++.+......            +...-.  ......++.++|.
T Consensus       175 fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~l~  240 (289)
T 2g72_A          175 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW------------YLAGEA--RLTVVPVSEEEVR  240 (289)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE------------EEETTE--EEECCCCCHHHHH
T ss_pred             CCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce------------EEcCCe--eeeeccCCHHHHH
Confidence            4999999999996543  67899999999999999999986432110            000000  0012246899999


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      ++|+++||+++++...
T Consensus       241 ~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          241 EALVRSGYKVRDLRTY  256 (289)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHcCCeEEEeeEe
Confidence            9999999999877544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.64  E-value=7.7e-08  Score=69.48  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++.+++||++|  ..++|+++++.|+|||++++........     ...  ..++-  .. ..+...+|.++|.++
T Consensus       172 fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~~--~~~~~--~~-~~~~~~~s~~~l~~l  239 (416)
T 4e2x_A          172 ANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDI-----VAK--TSFDQ--IF-DEHFFLFSATSVQGM  239 (416)
T ss_dssp             EEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHH-----HHH--TCGGG--CS-TTCCEECCHHHHHHH
T ss_pred             EEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHh-----hhh--cchhh--hh-hhhhhcCCHHHHHHH
Confidence            499999999999986  4799999999999999999865443211     000  00111  10 124556899999999


Q ss_pred             HHhCCCCeeEEEEcC
Q 048196           91 ATGAGFSGTRFEWFT  105 (115)
Q Consensus        91 l~~aGf~~~~~~~~~  105 (115)
                      ++++||+++++...+
T Consensus       240 l~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          240 AQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHTTEEEEEEEEEC
T ss_pred             HHHcCCEEEEEEEcc
Confidence            999999999887764

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=1e-08  Score=68.93  Aligned_cols=88  Identities=11%  Similarity=0.014  Sum_probs=59.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchh-----ccch-hcccCCCceeCCH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQ-----LDVL-MMTQNPSGKKRTK   84 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~-----~~l~-~~~~~~~g~~rt~   84 (115)
                      .|+|++..++|++++++..++|++++++|+|||+++|.+...++...   .......     ..+. ..........++.
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDF---FNSLLEKYGQLPYELLLVMEHGIRPGIFTA  201 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHH---HHHHHHHHSSCCHHHHHHHTTTCCCCCCCH
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHH---HHHHHhCCCCCchhhhhccccCCCCCccCH
Confidence            48999999999999888899999999999999999999986543210   0000000     0000 0000011123689


Q ss_pred             HHHHHHHHhCCCCeeEEEE
Q 048196           85 HEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        85 ~e~~~ll~~aGf~~~~~~~  103 (115)
                      +++.++|  +||++++...
T Consensus       202 ~~~~~~~--aGf~~~~~~~  218 (245)
T 3ggd_A          202 EDIELYF--PDFEILSQGE  218 (245)
T ss_dssp             HHHHHHC--TTEEEEEEEC
T ss_pred             HHHHHHh--CCCEEEeccc
Confidence            9999999  9999987544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.60  E-value=7e-08  Score=65.02  Aligned_cols=94  Identities=10%  Similarity=0.092  Sum_probs=58.3

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchh--ccchhc-cc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQ--LDVLMM-TQ   75 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~--~~l~~~-~~   75 (115)
                      +|+.+ + +.  .|+|++..++|+++|  ..++|+++++.|+|||++++....................  +.-... ..
T Consensus        85 ~d~~~~~-~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (259)
T 2p35_A           85 ADLATWK-PAQKADLLYANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGG  161 (259)
T ss_dssp             CCTTTCC-CSSCEEEEEEESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC----
T ss_pred             CChhhcC-ccCCcCEEEEeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhcccc
Confidence            56665 4 43  499999999999987  4689999999999999999987532211000000000000  000000 00


Q ss_pred             CCCceeCCHHHHHHHHHhCCCCe
Q 048196           76 NPSGKKRTKHEFLTLATGAGFSG   98 (115)
Q Consensus        76 ~~~g~~rt~~e~~~ll~~aGf~~   98 (115)
                      ......++.++|.++|+++||++
T Consensus       162 ~~~~~~~~~~~~~~~l~~aGf~v  184 (259)
T 2p35_A          162 LRRKPLPPPSDYFNALSPKSSRV  184 (259)
T ss_dssp             ---CCCCCHHHHHHHHGGGEEEE
T ss_pred             ccccCCCCHHHHHHHHHhcCCce
Confidence            01234578999999999999974

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.56  E-value=3e-08  Score=68.18  Aligned_cols=40  Identities=15%  Similarity=0.088  Sum_probs=36.9

Q ss_pred             ccEEEec-cccccCCh-----HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMK-WILHNWSD-----DHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~-~vlh~~~d-----~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++. +++|++++     ++..++|+++++.|+|||++++...
T Consensus       131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4999998 89999998     7889999999999999999998765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.55  E-value=2.5e-07  Score=63.15  Aligned_cols=84  Identities=12%  Similarity=-0.032  Sum_probs=61.9

Q ss_pred             CCCCC-CCC--c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            2 DDMFQ-NVP--K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      ||+++ +.+  . .|+|+.+.++|++++++..++++++++.|+|||+++++....+.....                  .
T Consensus       140 ~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~------------------g  201 (252)
T 2gb4_A          140 CSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA------------------G  201 (252)
T ss_dssp             SCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC------------------C
T ss_pred             CccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC------------------C
Confidence            68887 443  2 499999999999998888899999999999999998766553321100                  0


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .....+.+|+.++|+. +|+++.....
T Consensus       202 ~~~~~~~~el~~~l~~-~f~v~~~~~~  227 (252)
T 2gb4_A          202 PPFYVPSAELKRLFGT-KCSMQCLEEV  227 (252)
T ss_dssp             SSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             CCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence            0112578999999987 5988776543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.54  E-value=8.1e-07  Score=57.77  Aligned_cols=86  Identities=8%  Similarity=0.004  Sum_probs=60.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +++.  .|+|++.  +++++.++..++|+++++.|+|||++++.+........       .  ...  -  ...
T Consensus        83 ~d~~~~~~~~~~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-------~--~~~--~--~~~  147 (202)
T 2kw5_A           83 SNLADFDIVADAWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY-------N--TGG--P--KDL  147 (202)
T ss_dssp             CBTTTBSCCTTTCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG-------T--SCC--S--SSG
T ss_pred             cChhhcCCCcCCccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC-------C--CCC--C--Ccc
Confidence            56666 5553  4999984  34567778899999999999999999998875443210       0  000  0  012


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...+|.+++.++|+  ||+++++...
T Consensus       148 ~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          148 DLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             GGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             eeecCHHHHHHHhc--CceEEEEEEE
Confidence            34579999999998  9999876543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.50  E-value=2e-07  Score=64.60  Aligned_cols=80  Identities=14%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             EEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196           13 AIFMKWILHNWSDDH-CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA   91 (115)
Q Consensus        13 ~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll   91 (115)
                      ++++..+||+++|++ ...++++++++|+|||.|++.+...+..+..  ....   ....-..- .....||.+|+.++|
T Consensus       163 av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~--~~~~---~~~~~~~g-~p~~~rs~~ei~~~f  236 (277)
T 3giw_A          163 ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQE--VGRV---AREYAARN-MPMRLRTHAEAEEFF  236 (277)
T ss_dssp             EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHH--HHHH---HHHHHHTT-CCCCCCCHHHHHHTT
T ss_pred             hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHH--HHHH---HHHHHhcC-CCCccCCHHHHHHHh
Confidence            688899999999976 5899999999999999999999776532211  1111   11111111 134568999999999


Q ss_pred             HhCCCCeeE
Q 048196           92 TGAGFSGTR  100 (115)
Q Consensus        92 ~~aGf~~~~  100 (115)
                      .  ||+.++
T Consensus       237 ~--Glelve  243 (277)
T 3giw_A          237 E--GLELVE  243 (277)
T ss_dssp             T--TSEECT
T ss_pred             C--CCcccC
Confidence            4  998654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.46  E-value=6.6e-07  Score=61.36  Aligned_cols=82  Identities=11%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+ +.+. .|+|++..++|+++++...++++++++.|+|||.+++......+....+                ....
T Consensus       174 ~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~  237 (286)
T 3m70_A          174 YDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFS  237 (286)
T ss_dssp             CCGGGCCCCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCS
T ss_pred             eccccccccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCcc
Confidence            56665 3333 4999999999999999899999999999999999888776655432111                0122


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEE
Q 048196           80 KKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                      ...+.+++.++++.  |+++..
T Consensus       238 ~~~~~~~l~~~~~~--~~~~~~  257 (286)
T 3m70_A          238 FTFAENELKEYYKD--WEFLEY  257 (286)
T ss_dssp             CCBCTTHHHHHTTT--SEEEEE
T ss_pred             ccCCHHHHHHHhcC--CEEEEE
Confidence            33567899999954  877665

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.44  E-value=4.6e-07  Score=59.35  Aligned_cols=84  Identities=11%  Similarity=-0.018  Sum_probs=56.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhc-cchhcccCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQL-DVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~-~l~~~~~~~   77 (115)
                      +|+.+ +.+.  .|+|++..++|++++.  .++|+++++.|+|||++++.+......     ........ ...... ..
T Consensus        84 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~-~~  155 (211)
T 2gs9_A           84 AWGEALPFPGESFDVVLLFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALSP-----WAALYRRLGEKGVLP-WA  155 (211)
T ss_dssp             CCTTSCCSCSSCEEEEEEESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTSH-----HHHHHHHHHHTTCTT-GG
T ss_pred             cccccCCCCCCcEEEEEEcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcCc-----HHHHHHHHhhccCcc-cc
Confidence            56666 5554  4999999999999864  699999999999999999987643321     11000000 000000 11


Q ss_pred             CceeCCHHHHHHHHHhCC
Q 048196           78 SGKKRTKHEFLTLATGAG   95 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aG   95 (115)
                      ..+.+|.+++.++|+  |
T Consensus       156 ~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          156 QARFLAREDLKALLG--P  171 (211)
T ss_dssp             GCCCCCHHHHHHHHC--S
T ss_pred             ccccCCHHHHHHHhc--C
Confidence            345689999999998  7

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.34  E-value=4.2e-06  Score=56.14  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=37.8

Q ss_pred             CCCCC-CCCc-ccEEEec-cccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQ-NVPK-GDAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      +|+.+ +.+. .|+|++. ..+|++++++..++|+++++.|+|||.+++.
T Consensus        95 ~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A           95 GDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             SCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CChhhcccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            56666 4444 4999986 5677888888999999999999999998764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.33  E-value=5.9e-08  Score=67.24  Aligned_cols=86  Identities=14%  Similarity=0.188  Sum_probs=55.0

Q ss_pred             ccEEEeccccccC----ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHH
Q 048196           11 GDAIFMKWILHNW----SDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHE   86 (115)
Q Consensus        11 ~D~v~~~~vlh~~----~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e   86 (115)
                      .|+|++..++|++    +++...++++++++.|+|||++++.......-      .+... ..-..... ........++
T Consensus       178 fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y------~~~~~-~~~~~~~~-~~~~~~~p~~  249 (292)
T 3g07_A          178 YDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY------GKRKT-LTETIYKN-YYRIQLKPEQ  249 (292)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHH------HTTTT-SCHHHHHH-HHHCCCCGGG
T ss_pred             cCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhh------hhhhc-ccHHHHhh-hhcEEEcHHH
Confidence            4999999999655    78889999999999999999998843221100      00000 00000000 1122334789


Q ss_pred             HHHHHHh--CCCCeeEEEEc
Q 048196           87 FLTLATG--AGFSGTRFEWF  104 (115)
Q Consensus        87 ~~~ll~~--aGf~~~~~~~~  104 (115)
                      +.++|.+  +||+.+++...
T Consensus       250 ~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          250 FSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHHHhcCCCceEEEEecc
Confidence            9999999  99998877544

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.29  E-value=9.2e-07  Score=57.78  Aligned_cols=80  Identities=15%  Similarity=0.012  Sum_probs=61.4

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      +|+.+..+. .|+|++...+|+     ..++++++++.|+|||++++.+....                           
T Consensus       116 ~d~~~~~~~~fD~i~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~---------------------------  163 (205)
T 3grz_A          116 TSLLADVDGKFDLIVANILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDYL---------------------------  163 (205)
T ss_dssp             SSTTTTCCSCEEEEEEESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEGG---------------------------
T ss_pred             ccccccCCCCceEEEECCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCcc---------------------------
Confidence            566664444 599999887765     46889999999999999999543321                           


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                        +.+++.++++++||+.+++.......+++.-+|
T Consensus       164 --~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~  196 (205)
T 3grz_A          164 --QLPKIEQALAENSFQIDLKMRAGRWIGLAISRK  196 (205)
T ss_dssp             --GHHHHHHHHHHTTEEEEEEEEETTEEEEEEEEC
T ss_pred             --cHHHHHHHHHHcCCceEEeeccCCEEEEEEecc
Confidence              357899999999999999887777777776554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.25  E-value=9.2e-07  Score=61.16  Aligned_cols=46  Identities=15%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             CCCCC-CCC--c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVP--K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      +|+++ ++|  . .|+|++++++++++++...+++++++++|+|||.+++
T Consensus       201 ~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          201 VNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             CCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             cccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            57777 455  2 4999999999999999999999999999999999988

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.17  E-value=3.6e-06  Score=58.76  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             ccEEEeccccccC-ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCC------------Cchhhhhchhc--cc-hhcc
Q 048196           11 GDAIFMKWILHNW-SDDHCLKLLKIYYKSIPEDGKVIVVESILPELPE------------TSTVSKRNSQL--DV-LMMT   74 (115)
Q Consensus        11 ~D~v~~~~vlh~~-~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~------------~~~~~~~~~~~--~l-~~~~   74 (115)
                      .|+|++..++|+. ++++..++|++++++|+|||.+++.....+.-..            ....+......  +. ..+.
T Consensus       130 FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  209 (302)
T 2vdw_A          130 FNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVV  209 (302)
T ss_dssp             EEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEEEE
T ss_pred             eeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccccce
Confidence            3999999999974 5455689999999999999999887653211000            00000000000  00 0000


Q ss_pred             cCCCc-------eeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           75 QNPSG-------KKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        75 ~~~~g-------~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ..+.+       ...+.+++.++++++||+++.....
T Consensus       210 ~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          210 YNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             BCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             eeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence            00111       2467899999999999999887654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.05  E-value=9.8e-06  Score=56.29  Aligned_cols=94  Identities=12%  Similarity=-0.052  Sum_probs=58.6

Q ss_pred             ccEEEeccccccC--ChHHHHHHHHHHHhhCCCCCEEEEEeeecCC-------CCCCchhhh-----h---------chh
Q 048196           11 GDAIFMKWILHNW--SDDHCLKLLKIYYKSIPEDGKVIVVESILPE-------LPETSTVSK-----R---------NSQ   67 (115)
Q Consensus        11 ~D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~-------~~~~~~~~~-----~---------~~~   67 (115)
                      .|+|++..++|+.  +.++..++|+++++.|+|||.+++..+..+.       .........     +         ...
T Consensus       115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  194 (313)
T 3bgv_A          115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCK  194 (313)
T ss_dssp             EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCE
T ss_pred             EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccce
Confidence            4999999999987  4466789999999999999999997663211       000000000     0         000


Q ss_pred             ccchh-cccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           68 LDVLM-MTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        68 ~~l~~-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ..+.+ ..........+.+++.++++++||+.+.....
T Consensus       195 ~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          195 YDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             EEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             EEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence            00000 00000122357899999999999999887654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.05  E-value=3.2e-06  Score=58.36  Aligned_cols=82  Identities=13%  Similarity=0.134  Sum_probs=50.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhc-cchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQL-DVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~-~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++..++|++ +  ..++++++++.|+|||.+++.+...+.....+..... .... +-..+.  +.-.....+.+.
T Consensus       114 fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~p~~~~~~  188 (299)
T 3g5t_A          114 IDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLG--PYWEQPGRSRLR  188 (299)
T ss_dssp             EEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTG--GGSCTTHHHHHH
T ss_pred             eeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCccccc--chhhchhhHHHH
Confidence            4999999999999 4  5799999999999999999966543221111111100 0000 000010  001113456789


Q ss_pred             HHHHhCCCC
Q 048196           89 TLATGAGFS   97 (115)
Q Consensus        89 ~ll~~aGf~   97 (115)
                      ++++++||.
T Consensus       189 ~~l~~~gfp  197 (299)
T 3g5t_A          189 NMLKDSHLD  197 (299)
T ss_dssp             TTTTTCCCC
T ss_pred             HhhhccCCC
Confidence            999999994

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.03  E-value=5e-05  Score=48.37  Aligned_cols=81  Identities=11%  Similarity=0.082  Sum_probs=59.4

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChH-------HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchh
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDD-------HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLM   72 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~-------~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~   72 (115)
                      ||++++++.  .|+|++...+|..++.       +...+++++.+.| |||++++.+...                    
T Consensus        68 ~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------------------  126 (170)
T 3q87_B           68 ADLLCSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------------------  126 (170)
T ss_dssp             CSTTTTBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------------
T ss_pred             CChhhhcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------------
Confidence            677776663  4999999999866554       4577889999999 999999866211                    


Q ss_pred             cccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC-CceEEEE
Q 048196           73 MTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT-CNLWVRD  112 (115)
Q Consensus        73 ~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~lie  112 (115)
                               .+.+++.++++++||+..++.... +...++.
T Consensus       127 ---------~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~  158 (170)
T 3q87_B          127 ---------NRPKEVLARLEERGYGTRILKVRKILGETVYI  158 (170)
T ss_dssp             ---------GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEE
T ss_pred             ---------CCHHHHHHHHHHCCCcEEEEEeeccCCceEEE
Confidence                     134789999999999988776553 4444443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.03  E-value=1.7e-05  Score=52.77  Aligned_cols=80  Identities=13%  Similarity=-0.052  Sum_probs=52.8

Q ss_pred             ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHH
Q 048196           11 GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLT   89 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~   89 (115)
                      .|+|+     |++++. +...+++++.+.|+|||++++. .........+.                  ......+++. 
T Consensus       144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~------------------~~~~~~~~l~-  198 (230)
T 1fbn_A          144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD------------------PKEIFKEQKE-  198 (230)
T ss_dssp             EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC------------------HHHHHHHHHH-
T ss_pred             EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC------------------HHHhhHHHHH-
Confidence            49887     666653 4567799999999999999997 32211111100                  0001236788 


Q ss_pred             HHHhCCCCeeEEEEcCCc---eEEEEEEC
Q 048196           90 LATGAGFSGTRFEWFTCN---LWVRDFYK  115 (115)
Q Consensus        90 ll~~aGf~~~~~~~~~~~---~~lie~~~  115 (115)
                      +|+++||+.+++..+.+.   +.++.++|
T Consensus       199 ~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k  227 (230)
T 1fbn_A          199 ILEAGGFKIVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred             HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence            999999999988887654   66666653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.02  E-value=6e-06  Score=54.13  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             CCCCCCCCc--ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      +|+.+..+.  .|+|++..++|++++ ++..++|+++++.|+|||.+++...
T Consensus       104 ~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          104 TDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             CCTTTCCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cchhhCCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            566662243  499999999999997 5567999999999999999998665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.90  E-value=1.4e-05  Score=54.58  Aligned_cols=49  Identities=10%  Similarity=0.008  Sum_probs=39.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      ||+.+ ++|.  .|+|++..++|+++.   .+.++++++.|+|||+++++....+
T Consensus        88 ~~~e~~~~~~~sfD~v~~~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           88 APAEDTGLPPASVDVAIAAQAMHWFDL---DRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CCTTCCCCCSSCEEEEEECSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             hhhhhhcccCCcccEEEEeeehhHhhH---HHHHHHHHHHcCCCCEEEEEECCCC
Confidence            55555 6665  399999999998865   4789999999999999999887544

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.88  E-value=0.0001  Score=50.37  Aligned_cols=84  Identities=10%  Similarity=-0.039  Sum_probs=59.9

Q ss_pred             CCCCCCCCc--ccEEEecc-------------ccccCCh----------HHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 048196            2 DDMFQNVPK--GDAIFMKW-------------ILHNWSD----------DHCLKLLKIYYKSIPEDGKVIVVESILPELP   56 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~-------------vlh~~~d----------~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~   56 (115)
                      ||++++++.  .|+|++..             ++++.|.          +...++++++.+.|+|||.+++..       
T Consensus       166 ~d~~~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~-------  238 (276)
T 2b3t_A          166 SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-------  238 (276)
T ss_dssp             CSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-------
T ss_pred             cchhhhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-------
Confidence            677775543  49999873             4444432          346889999999999999998841       


Q ss_pred             CCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE-cCCceEEEEEEC
Q 048196           57 ETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW-FTCNLWVRDFYK  115 (115)
Q Consensus        57 ~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~lie~~~  115 (115)
                       .                 .     .+.+++.++++++||+.+++.. ..+...++.+++
T Consensus       239 -~-----------------~-----~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          239 -G-----------------W-----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             -C-----------------S-----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             -C-----------------c-----hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence             0                 0     1357899999999999887765 456667776654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.87  E-value=3.9e-05  Score=48.89  Aligned_cols=83  Identities=12%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+..+.  .|+|++...+|+ +.+...++++++.+.|+|||++++.......                         
T Consensus       109 ~d~~~~~~~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-------------------------  162 (194)
T 1dus_A          109 SDLYENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-------------------------  162 (194)
T ss_dssp             CSTTTTCTTSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-------------------------
T ss_pred             CchhcccccCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-------------------------
Confidence            566665443  499999888874 4566789999999999999999997542210                         


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                          ..++.+++++. |..+++........++.++|
T Consensus       163 ----~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          163 ----AKSLAKYMKDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             ----HHHHHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             ----hHHHHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence                13566677766 66666666666777777765

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.66  E-value=0.0003  Score=50.61  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CCCCCC-CCCcc--cEEEeccccccCChH------------------------------------HHHHHHHHHHhhCCC
Q 048196            1 MDDMFQ-NVPKG--DAIFMKWILHNWSDD------------------------------------HCLKLLKIYYKSIPE   41 (115)
Q Consensus         1 ~gd~~~-~~p~~--D~v~~~~vlh~~~d~------------------------------------~~~~iL~~~~~aL~p   41 (115)
                      +|.|+. .+|..  |+++.+.+||-.++.                                    +-..+|+..++.|+|
T Consensus       138 pgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~p  217 (374)
T 3b5i_A          138 PGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKR  217 (374)
T ss_dssp             ESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             ChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            377888 67753  999999999977621                                    334578999999999


Q ss_pred             CCEEEEEeeecCCCCCCchhhhhchhc-cc-----hhccc------------CCCceeCCHHHHHHHHH-hCCCCeeEEE
Q 048196           42 DGKVIVVESILPELPETSTVSKRNSQL-DV-----LMMTQ------------NPSGKKRTKHEFLTLAT-GAGFSGTRFE  102 (115)
Q Consensus        42 gg~lii~d~~~~~~~~~~~~~~~~~~~-~l-----~~~~~------------~~~g~~rt~~e~~~ll~-~aGf~~~~~~  102 (115)
                      ||++++.=...++........ ....+ ++     .-++.            +.--..+|.+|++++++ ++||++.++.
T Consensus       218 GG~mvl~~~gr~~~~~~~~~~-~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le  296 (374)
T 3b5i_A          218 GGAMFLVCLGRTSVDPTDQGG-AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLV  296 (374)
T ss_dssp             EEEEEEEEEECCCSSTTCCHH-HHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCEEEEEEecCCCCccccccc-hhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEE
Confidence            999998665443321100000 00001 10     00110            00123479999999998 5999987764


Q ss_pred             E
Q 048196          103 W  103 (115)
Q Consensus       103 ~  103 (115)
                      .
T Consensus       297 ~  297 (374)
T 3b5i_A          297 V  297 (374)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.65  E-value=3.2e-05  Score=56.52  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             CCCCC-CCC----cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC
Q 048196            2 DDMFQ-NVP----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP   56 (115)
Q Consensus         2 gd~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~   56 (115)
                      ||+++ +++    .+|+|++.++++ +  ++..+.|+++++.|+|||+|++.|.+.+++.
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             CcccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            78888 553    469999887774 3  3457778899999999999999999888654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.64  E-value=0.00037  Score=55.01  Aligned_cols=102  Identities=11%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC---CC-ch-hhhhchhccchhc
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP---ET-ST-VSKRNSQLDVLMM   73 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~---~~-~~-~~~~~~~~~l~~~   73 (115)
                      ||+.+ +.+.  .|+|++..++||+++++...+++++++.|+|| .++|..+..+-..   .. +. ............+
T Consensus       785 GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~f  863 (950)
T 3htx_A          785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKF  863 (950)
T ss_dssp             SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSC
T ss_pred             CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccc
Confidence            67766 4442  49999999999999998889999999999999 7777654332100   00 00 0000000000011


Q ss_pred             ccCCCceeCCHHHHHH----HHHhCCCCeeEEEEcC
Q 048196           74 TQNPSGKKRTKHEFLT----LATGAGFSGTRFEWFT  105 (115)
Q Consensus        74 ~~~~~g~~rt~~e~~~----ll~~aGf~~~~~~~~~  105 (115)
                      .......+.+.++++.    +.+..||.+ ++..++
T Consensus       864 Rh~DHrFEWTReEFr~Wae~LAer~GYsV-efvGVG  898 (950)
T 3htx_A          864 RNHDHKFEWTREQFNQWASKLGKRHNYSV-EFSGVG  898 (950)
T ss_dssp             SCSSCSCCBCHHHHHHHHHHHHHHTTEEE-EEEEES
T ss_pred             cccCcceeecHHHHHHHHHHHHHhcCcEE-EEEccC
Confidence            1112345678888888    555678865 555654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.61  E-value=3.4e-05  Score=50.14  Aligned_cols=51  Identities=18%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCC-------------hHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWS-------------DDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~-------------d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      +|+.+ +++.  .|+|++..++|++.             .++..++|+++++.|+|||++++.++..
T Consensus        96 ~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A           96 MDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            56666 5553  49999999988765             4567899999999999999999987543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.59  E-value=0.00034  Score=45.40  Aligned_cols=61  Identities=10%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             CCCCCCCC---cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQNVP---KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+.++   ..|++++...++     ...++++++.+.|+|||++++......                         
T Consensus        97 ~d~~~~~~~~~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------------  146 (204)
T 3e05_A           97 AFAPEGLDDLPDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-------------------------  146 (204)
T ss_dssp             CCTTTTCTTSCCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-------------------------
T ss_pred             CChhhhhhcCCCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-------------------------
Confidence            56655333   359999988876     346899999999999999998542211                         


Q ss_pred             ceeCCHHHHHHHHHhCCC
Q 048196           79 GKKRTKHEFLTLATGAGF   96 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf   96 (115)
                          +.+++.++++++||
T Consensus       147 ----~~~~~~~~l~~~g~  160 (204)
T 3e05_A          147 ----TLTKAVEFLEDHGY  160 (204)
T ss_dssp             ----HHHHHHHHHHHTTC
T ss_pred             ----cHHHHHHHHHHCCC
Confidence                24678888999998

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.51  E-value=7.9e-05  Score=48.87  Aligned_cols=90  Identities=9%  Similarity=0.034  Sum_probs=50.1

Q ss_pred             CCCCC-CCCcc-cEEEecc---cc--ccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcc
Q 048196            2 DDMFQ-NVPKG-DAIFMKW---IL--HNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMT   74 (115)
Q Consensus         2 gd~~~-~~p~~-D~v~~~~---vl--h~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~   74 (115)
                      ||+.+ +.+.. |.+.+..   .+  |+.+|.  .++|+++++.|+|||++++.-....-....+         .+.-. 
T Consensus        88 ~d~~~l~~~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~-  155 (218)
T 3mq2_A           88 ATAERLPPLSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSVP---------EVGEH-  155 (218)
T ss_dssp             CCSTTCCSCCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG---------GGTTC-
T ss_pred             cchhhCCCCCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccccc---------ccccC-
Confidence            56666 44422 6665222   11  233333  6899999999999999998432211111100         00000 


Q ss_pred             cCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           75 QNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                       ......+..+++.++++++||++.++..+
T Consensus       156 -~~~~~~~~~~~l~~~l~~aGf~i~~~~~~  184 (218)
T 3mq2_A          156 -PEPTPDSADEWLAPRYAEAGWKLADCRYL  184 (218)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -CccchHHHHHHHHHHHHHcCCCceeeecc
Confidence             00112223456889999999999887654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.51  E-value=0.00055  Score=45.12  Aligned_cols=80  Identities=11%  Similarity=-0.060  Sum_probs=50.7

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++...    ..+....+++++++.|+|||++++. .........+                  .....+.+++.++
T Consensus       144 ~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l  200 (227)
T 1g8a_A          144 VDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL  200 (227)
T ss_dssp             EEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH
T ss_pred             ceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH
Confidence            499986433    2333456699999999999999998 3222111110                  0011235678887


Q ss_pred             HHhCCCCeeEEEEcCCc---eEEEEEEC
Q 048196           91 ATGAGFSGTRFEWFTCN---LWVRDFYK  115 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~~---~~lie~~~  115 (115)
                       +++ |+.++...+.+.   +.++.++|
T Consensus       201 -~~~-f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          201 -SEY-FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             -HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             -Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence             777 999988887544   66666654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.50  E-value=0.00015  Score=49.00  Aligned_cols=79  Identities=5%  Similarity=-0.048  Sum_probs=48.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|++++.  +++..  +...+++++++.|||||+++|.......+...+                   .. ...++-.+.
T Consensus       148 vDvVf~d--~~~~~--~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p-------------------~~-~~~~~ev~~  203 (233)
T 4df3_A          148 VDGLYAD--VAQPE--QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE-------------------PS-EVYKREIKT  203 (233)
T ss_dssp             EEEEEEC--CCCTT--HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTC-------------------CC-HHHHHHHHH
T ss_pred             EEEEEEe--ccCCh--hHHHHHHHHHHhccCCCEEEEEEecccCCCCCC-------------------hH-HHHHHHHHH
Confidence            4887753  22222  357899999999999999998653221111000                   00 011334567


Q ss_pred             HHhCCCCeeEEEEcCC---ceEEEEE
Q 048196           91 ATGAGFSGTRFEWFTC---NLWVRDF  113 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~---~~~lie~  113 (115)
                      |+++||+..+...+.+   .+.++-+
T Consensus       204 L~~~GF~l~e~i~L~pf~~~H~lv~~  229 (233)
T 4df3_A          204 LMDGGLEIKDVVHLDPFDRDHAMIYA  229 (233)
T ss_dssp             HHHTTCCEEEEEECTTTSTTEEEEEE
T ss_pred             HHHCCCEEEEEEccCCCCCceEEEEE
Confidence            8899999999887754   4555544

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.49  E-value=0.00018  Score=47.76  Aligned_cols=80  Identities=11%  Similarity=-0.047  Sum_probs=49.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++...    ..+....+++++++.|+|||++++ ...........                  ....+...+ .++
T Consensus       148 ~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i-~~~~~~~~~~~------------------~~~~~~~~~-~~~  203 (233)
T 2ipx_A          148 VDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVI-SIKANCIDSTA------------------SAEAVFASE-VKK  203 (233)
T ss_dssp             EEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEE-EEEHHHHCSSS------------------CHHHHHHHH-HHT
T ss_pred             EEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEE-EEcccccccCC------------------CHHHHHHHH-HHH
Confidence            499997433    334456789999999999999999 33221100000                  000001123 588


Q ss_pred             HHhCCCCeeEEEEcCCc---eEEEEEE
Q 048196           91 ATGAGFSGTRFEWFTCN---LWVRDFY  114 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~~---~~lie~~  114 (115)
                      |+++||+.+++..+.+.   +.++.++
T Consensus       204 l~~~Gf~~~~~~~~~~~~~~~~~v~~~  230 (233)
T 2ipx_A          204 MQQENMKPQEQLTLEPYERDHAVVVGV  230 (233)
T ss_dssp             TGGGTEEEEEEEECTTTSSSEEEEEEE
T ss_pred             HHHCCCceEEEEecCCccCCcEEEEEE
Confidence            99999999987776543   5555554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.49  E-value=0.00012  Score=49.62  Aligned_cols=62  Identities=13%  Similarity=0.060  Sum_probs=47.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++....|     ....+++++.+.|+|||++++.+....                             +.+++.++
T Consensus       185 fD~Vv~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~  230 (254)
T 2nxc_A          185 FDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREA  230 (254)
T ss_dssp             EEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHH
T ss_pred             CCEEEECCcHH-----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHH
Confidence            49998754443     357899999999999999999654221                             25789999


Q ss_pred             HHhCCCCeeEEEEcCC
Q 048196           91 ATGAGFSGTRFEWFTC  106 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~  106 (115)
                      ++++||+.+++.....
T Consensus       231 l~~~Gf~~~~~~~~~~  246 (254)
T 2nxc_A          231 MAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             HHHTTCEEEEEEEETT
T ss_pred             HHHCCCEEEEEeccCC
Confidence            9999999988776644

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.47  E-value=5.8e-05  Score=50.97  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=38.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      +|+.+ +++.  .|+|++..+++++.++ ..++|+++++.|+|||++++....
T Consensus       103 ~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          103 AKAEDLPFPSGAFEAVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             CCTTSCCSCTTCEEEEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CcHHHCCCCCCCEEEEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            56666 5553  4999998876666433 689999999999999999997654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.46  E-value=0.00016  Score=49.57  Aligned_cols=39  Identities=8%  Similarity=0.101  Sum_probs=35.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++..++|+++.++...+++++.+.| |||++++.-.
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            49999999999999999999999999999 9999998643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.44  E-value=0.00052  Score=45.19  Aligned_cols=84  Identities=15%  Similarity=0.078  Sum_probs=52.5

Q ss_pred             CCC--CCCCCc--ccEEEeccccccCChHH-----------------HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch
Q 048196            2 DDM--FQNVPK--GDAIFMKWILHNWSDDH-----------------CLKLLKIYYKSIPEDGKVIVVESILPELPETST   60 (115)
Q Consensus         2 gd~--~~~~p~--~D~v~~~~vlh~~~d~~-----------------~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~   60 (115)
                      ||.  +.+++.  .|+|++.-.+|..++..                 ..++++++.+.|+|||++++.-..   .     
T Consensus       111 ~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~-----  182 (230)
T 3evz_A          111 SNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---K-----  182 (230)
T ss_dssp             CSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---C-----
T ss_pred             CCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---c-----
Confidence            453  334553  49999887776655422                 378999999999999999985211   0     


Q ss_pred             hhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcCC--ceEEEEE
Q 048196           61 VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTC--NLWVRDF  113 (115)
Q Consensus        61 ~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~--~~~lie~  113 (115)
                                          ..+.+++.++++++||....+....+  ...++.+
T Consensus       183 --------------------~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f  217 (230)
T 3evz_A          183 --------------------EKLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIF  217 (230)
T ss_dssp             --------------------HHHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEE
T ss_pred             --------------------HhHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEE
Confidence                                01246889999999997766544433  3344444

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.40  E-value=2.6e-05  Score=51.99  Aligned_cols=73  Identities=11%  Similarity=0.063  Sum_probs=46.8

Q ss_pred             ccEEEe-ccc--cccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHH
Q 048196           11 GDAIFM-KWI--LHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEF   87 (115)
Q Consensus        11 ~D~v~~-~~v--lh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~   87 (115)
                      .|+|++ .+.  .+++..+....+++++++.|+|||++++.+.......       ....+        ........+++
T Consensus       129 fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~~  193 (236)
T 1zx0_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKY--------SDITIMFEETQ  193 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTC--------SCHHHHHHHHT
T ss_pred             eEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHh-------hchhh--------hhhhhhccHHH
Confidence            499998 554  5566556677899999999999999998765421100       00000        01111224566


Q ss_pred             HHHHHhCCCCe
Q 048196           88 LTLATGAGFSG   98 (115)
Q Consensus        88 ~~ll~~aGf~~   98 (115)
                      ...+.++||+.
T Consensus       194 ~~~l~~aGF~~  204 (236)
T 1zx0_A          194 VPALLEAGFRR  204 (236)
T ss_dssp             HHHHHHTTCCG
T ss_pred             HHHHHHCCCCC
Confidence            77889999995

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.39  E-value=0.0018  Score=46.32  Aligned_cols=101  Identities=10%  Similarity=0.019  Sum_probs=61.0

Q ss_pred             CCCCCC-CCCcc--cEEEeccccccCChH-------------------------------HHHHHHHHHHhhCCCCCEEE
Q 048196            1 MDDMFQ-NVPKG--DAIFMKWILHNWSDD-------------------------------HCLKLLKIYYKSIPEDGKVI   46 (115)
Q Consensus         1 ~gd~~~-~~p~~--D~v~~~~vlh~~~d~-------------------------------~~~~iL~~~~~aL~pgg~li   46 (115)
                      +|.|+. .+|..  |+++.+++||=.++.                               +-..+|+..++.|+|||+++
T Consensus       127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv  206 (359)
T 1m6e_X          127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV  206 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred             chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence            478998 67853  999999999965541                               23355888999999999998


Q ss_pred             EEeeecCCCCC-C----chhhhhc-hhccchhc---------ccCCCceeCCHHHHHHHHHhCC-CCeeEE
Q 048196           47 VVESILPELPE-T----STVSKRN-SQLDVLMM---------TQNPSGKKRTKHEFLTLATGAG-FSGTRF  101 (115)
Q Consensus        47 i~d~~~~~~~~-~----~~~~~~~-~~~~l~~~---------~~~~~g~~rt~~e~~~ll~~aG-f~~~~~  101 (115)
                      +.=...+.... .    ...+.+. .+.++.--         ..+.--..+|.+|++++++++| |++.++
T Consensus       207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~  277 (359)
T 1m6e_X          207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence            86654443210 0    0011111 11111000         0001223578999999999996 476654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.33  E-value=0.00069  Score=48.92  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=59.8

Q ss_pred             CCCCCC-CCCcc--cEEEeccccccCChHH-------------------------HHH------------HHHHHHhhCC
Q 048196            1 MDDMFQ-NVPKG--DAIFMKWILHNWSDDH-------------------------CLK------------LLKIYYKSIP   40 (115)
Q Consensus         1 ~gd~~~-~~p~~--D~v~~~~vlh~~~d~~-------------------------~~~------------iL~~~~~aL~   40 (115)
                      +|.|+. .+|..  |+++.+++||=.++..                         ..+            +|+..++.|+
T Consensus       137 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~  216 (384)
T 2efj_A          137 PGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELI  216 (384)
T ss_dssp             CSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             chhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999 67863  9999999999555321                         212            2777789999


Q ss_pred             CCCEEEEEeeecCCCC-CCchhhhh-chhccchhc---------ccCCCceeCCHHHHHHHHHhCC-CCeeEEE
Q 048196           41 EDGKVIVVESILPELP-ETSTVSKR-NSQLDVLMM---------TQNPSGKKRTKHEFLTLATGAG-FSGTRFE  102 (115)
Q Consensus        41 pgg~lii~d~~~~~~~-~~~~~~~~-~~~~~l~~~---------~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~  102 (115)
                      |||++++.=...+... .....+.+ ..+.++.--         ..+.--..+|.+|++++++++| |++.++.
T Consensus       217 pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le  290 (384)
T 2efj_A          217 SRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE  290 (384)
T ss_dssp             EEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred             cCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence            9999988655443320 10000001 011111000         0001123478999999999985 7776653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.31  E-value=0.00016  Score=50.99  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=39.8

Q ss_pred             CCCCCCCCc-ccEEEecccccc---CChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVPK-GDAIFMKWILHN---WSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      +|+++..+. .|+|++..++|+   ++.+...++++++++.|+|||++++...
T Consensus       252 ~d~~~~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          252 SNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             CSTTTTCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ccccccccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            566664343 599999999986   3556689999999999999999999764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.25  E-value=0.00037  Score=48.53  Aligned_cols=81  Identities=14%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|++++..++|++     ..+|+++++.|+|||++++.  +.|+-...+      ...+-.-.+-.+....++.+++.++
T Consensus       152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l--vkPqfe~~~------~~~~~~G~vrd~~~~~~~~~~v~~~  218 (291)
T 3hp7_A          152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVAL--VKPQFEAGR------EQIGKNGIVRESSIHEKVLETVTAF  218 (291)
T ss_dssp             CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE--ECGGGTSCG------GGCC-CCCCCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE--ECcccccCh------hhcCCCCccCCHHHHHHHHHHHHHH
Confidence            4999988888765     68999999999999999986  222211110      0011000000001123467899999


Q ss_pred             HHhCCCCeeEEEEc
Q 048196           91 ATGAGFSGTRFEWF  104 (115)
Q Consensus        91 l~~aGf~~~~~~~~  104 (115)
                      ++++||.+..+..-
T Consensus       219 ~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          219 AVDYGFSVKGLDFS  232 (291)
T ss_dssp             HHHTTEEEEEEEEC
T ss_pred             HHHCCCEEEEEEEC
Confidence            99999998776543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.14  E-value=0.00048  Score=43.36  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++...+|+      .++++++.+.|+|||++++.+.
T Consensus        95 ~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           95 PDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             CSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence            599999999987      5899999999999999998653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.10  E-value=0.00079  Score=42.60  Aligned_cols=54  Identities=22%  Similarity=0.262  Sum_probs=41.7

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..++|++     ..+++++.+.|+|||++++.....                             .+..++.++
T Consensus       101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~  146 (192)
T 1l3i_A          101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC  146 (192)
T ss_dssp             EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred             CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence            5999998887643     689999999999999999865310                             013678888


Q ss_pred             HHhCCCCe
Q 048196           91 ATGAGFSG   98 (115)
Q Consensus        91 l~~aGf~~   98 (115)
                      ++++||..
T Consensus       147 l~~~g~~~  154 (192)
T 1l3i_A          147 LRDLGFDV  154 (192)
T ss_dssp             HHHTTCCC
T ss_pred             HHHCCCce
Confidence            99999954

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.10  E-value=1.7e-05  Score=53.26  Aligned_cols=73  Identities=10%  Similarity=-0.027  Sum_probs=44.3

Q ss_pred             cEEEe-----ccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHH
Q 048196           12 DAIFM-----KWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHE   86 (115)
Q Consensus        12 D~v~~-----~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e   86 (115)
                      |.+++     ...++++++  ...+++++++.|||||++++.+........       ...+        .+-.....+.
T Consensus       130 D~i~~D~~~~~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~-------~~~~--------~~~~~~~~~~  192 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGELM-------KSKY--------SDITIMFEET  192 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHHT-------TTTC--------SCHHHHHHHH
T ss_pred             ceEEEeeeecccchhhhcc--hhhhhhhhhheeCCCCEEEEEecCCchhhh-------hhhh--------hhhhhhhHHH
Confidence            76653     455556655  579999999999999999875432111100       0000        0111123457


Q ss_pred             HHHHHHhCCCCeeEE
Q 048196           87 FLTLATGAGFSGTRF  101 (115)
Q Consensus        87 ~~~ll~~aGf~~~~~  101 (115)
                      +...|.++||+...+
T Consensus       193 ~~~~L~eaGF~~~~i  207 (236)
T 3orh_A          193 QVPALLEAGFRRENI  207 (236)
T ss_dssp             THHHHHHHTCCGGGE
T ss_pred             HHHHHHHcCCeEEEE
Confidence            778888999997644

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.10  E-value=0.00092  Score=44.50  Aligned_cols=85  Identities=11%  Similarity=0.034  Sum_probs=44.9

Q ss_pred             cEEEeccccccCChHH------HHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHH
Q 048196           12 DAIFMKWILHNWSDDH------CLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKH   85 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~------~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~   85 (115)
                      |.+....+...|+...      ...+|+++++.|+|||++++.....+. ....+..    .....    .........+
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~~~~----~~~~~----~~~~~~~~~~  166 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEAEIK----KRGLP----LLSKAYFLSE  166 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSH
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhchhh----hcCCC----CCChhhcchH
Confidence            5554444444444321      146899999999999999995433332 1110000    00000    0000011123


Q ss_pred             HHHHHHHhCCCCeeEEEEcC
Q 048196           86 EFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~~  105 (115)
                      |+.++++++||++..+....
T Consensus       167 el~~~l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          167 QYKAELSNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHHHHHHHTCEEEEEEEEC
T ss_pred             HHHHHHHHcCCCeeeeeecC
Confidence            59999999999988776553

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.05  E-value=0.0017  Score=43.48  Aligned_cols=49  Identities=14%  Similarity=0.266  Sum_probs=37.8

Q ss_pred             CCCCCCC------C--cccEEEeccccccCCh-------HHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNV------P--KGDAIFMKWILHNWSD-------DHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~------p--~~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      +|++++.      +  ..|+|++...++...+       +...++++++++.|+|||++++.+.
T Consensus       152 ~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          152 ADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             CCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             cccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            6777744      3  2499999876665543       6678999999999999999998544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.05  E-value=9.6e-05  Score=48.95  Aligned_cols=64  Identities=8%  Similarity=-0.057  Sum_probs=43.7

Q ss_pred             CCCCCC--CC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccC
Q 048196            2 DDMFQN--VP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQN   76 (115)
Q Consensus         2 gd~~~~--~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (115)
                      +|+.+.  .+ .  .|+|+++      .  +..++|+++++.|+|||+++           .                  
T Consensus        98 ~d~~~~~~~~~~~~fD~v~~~------~--~~~~~l~~~~~~LkpgG~l~-----------~------------------  140 (226)
T 3m33_A           98 WNGKGELPAGLGAPFGLIVSR------R--GPTSVILRLPELAAPDAHFL-----------Y------------------  140 (226)
T ss_dssp             CCSCSSCCTTCCCCEEEEEEE------S--CCSGGGGGHHHHEEEEEEEE-----------E------------------
T ss_pred             cchhhccCCcCCCCEEEEEeC------C--CHHHHHHHHHHHcCCCcEEE-----------E------------------
Confidence            566553  33 3  3999876      1  24688999999999999998           0                  


Q ss_pred             CCceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           77 PSGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        77 ~~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                       .+...+.+++.++++++||+..++..
T Consensus       141 -~~~~~~~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          141 -VGPRLNVPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             -EESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred             -eCCcCCHHHHHHHHHHCCCeEEEEEe
Confidence             00012345788888888888776543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.02  E-value=0.00085  Score=43.29  Aligned_cols=56  Identities=9%  Similarity=-0.177  Sum_probs=38.5

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHH--hCCCCeeEEEEcC-
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLAT--GAGFSGTRFEWFT-  105 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~~-  105 (115)
                      .++++++++.|+|||++++++...                             ...+++.++++  ++||..+++.... 
T Consensus       144 ~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~  194 (215)
T 4dzr_A          144 RRMAALPPYVLARGRAGVFLEVGH-----------------------------NQADEVARLFAPWRERGFRVRKVKDLR  194 (215)
T ss_dssp             HHHHTCCGGGBCSSSEEEEEECTT-----------------------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEECC-----------------------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence            788999999999999966654310                             12357778888  8898887766553 


Q ss_pred             CceEEEEE
Q 048196          106 CNLWVRDF  113 (115)
Q Consensus       106 ~~~~lie~  113 (115)
                      +...++.+
T Consensus       195 ~~~r~~~~  202 (215)
T 4dzr_A          195 GIDRVIAV  202 (215)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            44454444

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.94  E-value=0.0021  Score=44.62  Aligned_cols=69  Identities=10%  Similarity=0.066  Sum_probs=45.2

Q ss_pred             ccEEEeccccccCChHHH--HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHC--LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++....+.+++...  .+++++++++|+|||.+++...    .+   .       .         .  ..+..++.
T Consensus       170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~----~~---~-------~---------~--~~~~~~~~  224 (304)
T 3bwc_A          170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE----SI---W-------L---------D--LELIEKMS  224 (304)
T ss_dssp             EEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC----CT---T-------T---------C--HHHHHHHH
T ss_pred             eeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC----Cc---c-------c---------c--hHHHHHHH
Confidence            499999776666554332  6899999999999999998631    10   0       0         0  12357899


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      +.++++||..+++...
T Consensus       225 ~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          225 RFIRETGFASVQYALM  240 (304)
T ss_dssp             HHHHHHTCSEEEEEEC
T ss_pred             HHHHhCCCCcEEEEEe
Confidence            9999999998887654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.92  E-value=0.0012  Score=45.59  Aligned_cols=82  Identities=7%  Similarity=-0.058  Sum_probs=56.4

Q ss_pred             CCCCCCCC-c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee--ecCCCCCCchhhhhchhccchhcccCC
Q 048196            2 DDMFQNVP-K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES--ILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~~~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~--~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      +|+....| . +|++++.-++|++.+++....+ ++.++|+|+|.++-.+.  +...++.                    
T Consensus       188 ~D~~~~~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~g--------------------  246 (281)
T 3lcv_B          188 ADLLEDRLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKG--------------------  246 (281)
T ss_dssp             CCTTTSCCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------C--------------------
T ss_pred             eeecccCCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcc--------------------
Confidence            57777444 3 5999999999999998877888 99999999999888776  2222211                    


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEcCC
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWFTC  106 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~  106 (115)
                       -...-...|++++.+.|... +...+++
T Consensus       247 -m~~~Y~~~~e~~~~~~g~~~-~~~~~~n  273 (281)
T 3lcv_B          247 -MFQNYSQSFESQARERSCRI-QRLEIGN  273 (281)
T ss_dssp             -HHHHHHHHHHHHHHHHTCCE-EEEEETT
T ss_pred             -hhhHHHHHHHHHHHhcCCce-eeeeecC
Confidence             00112468999999999744 4444433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.89  E-value=0.0043  Score=41.75  Aligned_cols=59  Identities=10%  Similarity=0.116  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEcC-
Q 048196           27 HCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFT-  105 (115)
Q Consensus        27 ~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-  105 (115)
                      ....+++.+.+.|+|||+++++   .+.                           ....++.++++++||...++.++. 
T Consensus       154 ~~~~~l~~~~~~LkpgG~l~~~---~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~v~~  203 (259)
T 3lpm_A          154 TLEDTIRVAASLLKQGGKANFV---HRP---------------------------ERLLDIIDIMRKYRLEPKRIQFVHP  203 (259)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEE---ECT---------------------------TTHHHHHHHHHHTTEEEEEEEEEES
T ss_pred             CHHHHHHHHHHHccCCcEEEEE---EcH---------------------------HHHHHHHHHHHHCCCceEEEEEeec
Confidence            3567999999999999999983   111                           123577888888999888776652 


Q ss_pred             -----CceEEEEEEC
Q 048196          106 -----CNLWVRDFYK  115 (115)
Q Consensus       106 -----~~~~lie~~~  115 (115)
                           ....+++++|
T Consensus       204 ~~~~~~~~~l~~~~k  218 (259)
T 3lpm_A          204 RSDREANTVLVEGIK  218 (259)
T ss_dssp             STTSCCSEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEe
Confidence                 3456777654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.86  E-value=2.9e-05  Score=52.23  Aligned_cols=85  Identities=12%  Similarity=-0.023  Sum_probs=47.9

Q ss_pred             ccEEEeccccccCCh-------------HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196           11 GDAIFMKWILHNWSD-------------DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d-------------~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      .|+|++.-.+|..++             +....+++++++.|+|||++.+++.+.....      ..  .....+... .
T Consensus       141 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~~--l~~~g~~~~-~  211 (254)
T 2h00_A          141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------QL--KKRLRWYSC-M  211 (254)
T ss_dssp             BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------HH--GGGBSCEEE-E
T ss_pred             ccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------hc--ccceEEEEE-C
Confidence            499999866665441             1123567888999999999988775443210      00  011111111 1


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .+...+.+++.++++++||+.+++...
T Consensus       212 ~~~~~~~~~~~~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          212 LGKKCSLAPLKEELRIQGVPKVTYTEF  238 (254)
T ss_dssp             ESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCChhHHHHHHHHHHHcCCCceEEEEE
Confidence            244455689999999999999887665

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.80  E-value=0.0013  Score=40.88  Aligned_cols=41  Identities=7%  Similarity=-0.010  Sum_probs=33.3

Q ss_pred             ccEEEeccccccCChHH---------HHHHHHHHHhhCCCCCEEEEEeee
Q 048196           11 GDAIFMKWILHNWSDDH---------CLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      .|+|++...+|..++..         ..++++++.+.|+|||++++....
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            49999998888776532         168999999999999999987653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.78  E-value=0.001  Score=44.65  Aligned_cols=67  Identities=21%  Similarity=0.290  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccc-hhcccCCCceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDV-LMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .++|+++++.|+|||++++.-  .+.....  ..    ...- .... .+....++.+++.++++++||++..+...
T Consensus       117 ~~~l~~i~rvLkpgG~lv~~~--~p~~e~~--~~----~~~~~G~~~-d~~~~~~~~~~l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAALI--KPQFEAG--RE----QVGKNGIIR-DPKVHQMTIEKVLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEEEE--CHHHHSC--HH----HHC-CCCCC-CHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             HHHHHHHHHhccCCCEEEEEE--CcccccC--HH----HhCcCCeec-CcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence            689999999999999999842  1110000  00    0000 0000 00112247789999999999998877544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.73  E-value=0.00049  Score=48.70  Aligned_cols=47  Identities=13%  Similarity=0.094  Sum_probs=39.1

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||+.+ +.|. .|+|++..+++++..+.....+.++++.|+|||++++.
T Consensus       106 ~d~~~~~~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          106 GKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             SCTTTCCCSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             cchhhCCCCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            56666 5554 59999999999998877788899999999999999854

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.72  E-value=0.001  Score=47.64  Aligned_cols=48  Identities=13%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             CCCCCCCCc--ccEEEecccccc---CChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK--GDAIFMKWILHN---WSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|++++++.  .|+|++...+|.   .++....++++++.+.|+|||+++++.
T Consensus       282 ~D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          282 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             CSTTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            677776664  499999999885   445556789999999999999999954

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.72  E-value=0.0022  Score=41.09  Aligned_cols=41  Identities=12%  Similarity=0.075  Sum_probs=30.7

Q ss_pred             ccEEEecccc-------ccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196           11 GDAIFMKWIL-------HNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus        11 ~D~v~~~~vl-------h~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      .|+|++...+       +....++..++++++.+.|+|||++++....
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            4999987655       1122335678999999999999999997754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.64  E-value=0.0011  Score=43.75  Aligned_cols=37  Identities=14%  Similarity=0.057  Sum_probs=31.5

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++..++|++ ++ ....+.++.++|+|||.+|-.+
T Consensus       116 ~DvVLa~k~LHlL-~~-~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          116 YDVVFLLKMLPVL-KQ-QDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EEEEEEETCHHHH-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred             cChhhHhhHHHhh-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence            4999999999999 43 4566669999999999888877

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.64  E-value=0.0052  Score=41.30  Aligned_cols=80  Identities=8%  Similarity=-0.057  Sum_probs=45.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++....   + ++...+++++++.|+|||++++.-.....+...                   +-.+ ..++..+.
T Consensus       147 ~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~-------------------~~~e-~~~~~~~~  202 (232)
T 3id6_C          147 VDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK-------------------DPKE-IYKTEVEK  202 (232)
T ss_dssp             EEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------C-------------------CSSS-STTHHHHH
T ss_pred             eEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCC-------------------CHHH-HHHHHHHH
Confidence            5998865432   2 233445566777999999999962111100000                   0000 11234556


Q ss_pred             HHhCCCCeeEEEEcCC---ceEEEEEE
Q 048196           91 ATGAGFSGTRFEWFTC---NLWVRDFY  114 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~---~~~lie~~  114 (115)
                      |+++||++.+...+.+   .+.++.++
T Consensus       203 L~~~gf~~~~~~~l~p~~~~h~~v~~~  229 (232)
T 3id6_C          203 LENSNFETIQIINLDPYDKDHAIVLSK  229 (232)
T ss_dssp             HHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred             HHHCCCEEEEEeccCCCcCceEEEEEE
Confidence            7789999999888854   36666654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.59  E-value=0.0019  Score=43.14  Aligned_cols=66  Identities=9%  Similarity=0.127  Sum_probs=46.2

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.+.++.  .|+|++     +.++.  .++++++.+.|+|||++++.....+                          
T Consensus       152 ~d~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------  198 (255)
T 3mb5_A          152 KDIYEGIEEENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN--------------------------  198 (255)
T ss_dssp             SCGGGCCCCCSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH--------------------------
T ss_pred             CchhhccCCCCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH--------------------------
Confidence            577666664  499886     45543  5789999999999999998642110                          


Q ss_pred             eeCCHHHHHHHHHhCC--CCeeEEEE
Q 048196           80 KKRTKHEFLTLATGAG--FSGTRFEW  103 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aG--f~~~~~~~  103 (115)
                         ...++.++++++|  |..+++..
T Consensus       199 ---~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          199 ---QVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             ---HHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             ---HHHHHHHHHHHcCCCccccEEEE
Confidence               1356777888888  87776544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.52  E-value=0.00061  Score=50.41  Aligned_cols=46  Identities=13%  Similarity=0.096  Sum_probs=39.4

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||+.+ ++|. .|+|++..+++++.+++....+.++++.|+|||.+++
T Consensus       214 ~d~~~~~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          214 GKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             SCTTTCCCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             CchhhCccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            67777 6664 5999998888989888888889999999999999985

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.51  E-value=0.0071  Score=39.69  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=46.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++. +.+.   ++...+++++++.|+|||++++.-...+              .+.     .....+...+++.. 
T Consensus       127 fD~V~~~-~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~-----~~~~~~~~~~~~~~-  182 (210)
T 1nt2_A          127 VDLIYQD-IAQK---NQIEILKANAEFFLKEKGEVVIMVKARS--------------IDS-----TAEPEEVFKSVLKE-  182 (210)
T ss_dssp             EEEEEEC-CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HCT-----TSCHHHHHHHHHHH-
T ss_pred             eeEEEEe-ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCC--------------ccc-----cCCHHHHHHHHHHH-
Confidence            4999876 3322   3445679999999999999999721110              000     00000000123333 


Q ss_pred             HHhCCCCeeEEEEcC---CceEEEEEEC
Q 048196           91 ATGAGFSGTRFEWFT---CNLWVRDFYK  115 (115)
Q Consensus        91 l~~aGf~~~~~~~~~---~~~~lie~~~  115 (115)
                      ++++ |++.+.....   ..+.++.+++
T Consensus       183 l~~~-f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          183 MEGD-FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             HHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             HHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence            7888 9999988774   3556666653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.49  E-value=0.0028  Score=45.54  Aligned_cols=48  Identities=15%  Similarity=0.088  Sum_probs=38.6

Q ss_pred             CCCCCC-CC-c-ccEEEecccccc---CChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQN-VP-K-GDAIFMKWILHN---WSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~-~p-~-~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+++. .+ . .|+|++...+|+   ...+...++++++++.|+|||+++|+-
T Consensus       287 ~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          287 SDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             CSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            577773 33 2 499999999987   445667899999999999999999963

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.44  E-value=0.004  Score=43.28  Aligned_cols=48  Identities=13%  Similarity=0.030  Sum_probs=32.5

Q ss_pred             CCCCC-CCCc-ccEEEecccccc--------C-ChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHN--------W-SDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~--------~-~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||+.+ +.+. .|+|+.....+.        . ..+....+++.+++.|+|||++++..
T Consensus       113 gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          113 GDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             SCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            67776 4443 599997533221        0 12235689999999999999999853

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.42  E-value=0.012  Score=41.66  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhh-hchhccchhcccCCC-ceeCCHHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSK-RNSQLDVLMMTQNPS-GKKRTKHEFLT   89 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-g~~rt~~e~~~   89 (115)
                      .+++.--+|++++.++..++|+.+.+.. |+|.+++.|.+.+..+..+ ..+ +...+.-..-....+ ..-.|.++..+
T Consensus       196 tl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~-fg~~m~~~l~~~rg~~l~~~~~y~s~~~~~~  273 (334)
T 1rjd_A          196 TIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR-FGAIMQSNLKESRNLEMPTLMTYNSKEKYAS  273 (334)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC-HHHHHHHHHHHHHCCCCTTTTTTCSHHHHHG
T ss_pred             EEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch-HHHHHHHHhhcccCCcccccccCCCHHHHHH
Confidence            6788889999999999999999999877 7888889999877332222 111 100010000000111 13358899999


Q ss_pred             HHHhCCCC
Q 048196           90 LATGAGFS   97 (115)
Q Consensus        90 ll~~aGf~   97 (115)
                      .|+++||+
T Consensus       274 rl~~~Gf~  281 (334)
T 1rjd_A          274 RWSAAPNV  281 (334)
T ss_dssp             GGTTSSEE
T ss_pred             HHHHCCCC
Confidence            99999997

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.34  E-value=0.0047  Score=39.14  Aligned_cols=73  Identities=10%  Similarity=0.066  Sum_probs=43.2

Q ss_pred             ccEEEecc-ccccC------ChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCC
Q 048196           11 GDAIFMKW-ILHNW------SDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRT   83 (115)
Q Consensus        11 ~D~v~~~~-vlh~~------~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt   83 (115)
                      .|++++.. .+++-      ..+...++|+++.+.|+|||++++..+...+.. ..                    ....
T Consensus        90 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~--------------------~~~~  148 (185)
T 3mti_A           90 IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGG-DM--------------------EKDA  148 (185)
T ss_dssp             EEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-------CH--------------------HHHH
T ss_pred             cCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCC-HH--------------------HHHH
Confidence            49998763 33220      235567899999999999999999764322211 00                    0011


Q ss_pred             HHHHHHHHHhCCCCeeEEEEc
Q 048196           84 KHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        84 ~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ..+|.+.+...+|...+....
T Consensus       149 ~~~~~~~l~~~~~~~~~~~~~  169 (185)
T 3mti_A          149 VLEYVIGLDQRVFTAMLYQPL  169 (185)
T ss_dssp             HHHHHHHSCTTTEEEEEEEES
T ss_pred             HHHHHHhCCCceEEEEEehhh
Confidence            346666666778888777665

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.21  E-value=0.0086  Score=42.66  Aligned_cols=48  Identities=6%  Similarity=-0.174  Sum_probs=37.3

Q ss_pred             CCCCCCCCc-----ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196            2 DDMFQNVPK-----GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus         2 gd~~~~~p~-----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      ||+++++|.     .|+|++...+|...   ..++++++.++|+|||++++.+...
T Consensus       228 ~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          228 FDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             ChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEec
Confidence            788775542     49999988776542   4899999999999999887777654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=96.18  E-value=0.029  Score=38.30  Aligned_cols=70  Identities=10%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             CCCCCCCC-c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVP-K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||.++..+ . .|+|++....      ...++++++.+.|+|||.+++.++......                       
T Consensus       182 ~D~~~~~~~~~fD~Vi~~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------  232 (278)
T 2frn_A          182 MDNRDFPGENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------  232 (278)
T ss_dssp             SCTTTCCCCSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------
T ss_pred             CCHHHhcccCCccEEEECCch------hHHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------
Confidence            67777333 2 4999874331      236789999999999999999887542110                       


Q ss_pred             eeCCHHHHHHHHHhCCCCeeE
Q 048196           80 KKRTKHEFLTLATGAGFSGTR  100 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~  100 (115)
                      .....+++.+.++++||+...
T Consensus       233 ~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          233 PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             TTTTHHHHHHHHHHTTCEEEE
T ss_pred             cccHHHHHHHHHHHcCCeeEE
Confidence            012357888999999998765

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.08  E-value=0.031  Score=39.55  Aligned_cols=88  Identities=9%  Similarity=-0.008  Sum_probs=56.1

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC-ceeCCHHHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS-GKKRTKHEFLTL   90 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-g~~rt~~e~~~l   90 (115)
                      =+++.--++.+++.++..++|+.+.+..+ +|.+++.|.+.+.++.+....+........+    .+ ..-.|.++..+.
T Consensus       193 tl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~M~~~l~~~g~pl----~sl~~y~t~~~~~~r  267 (334)
T 3iei_A          193 TLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQIMIENLRRRQCDL----AGVETCKSLESQKER  267 (334)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHHHHHHHHTTTCCC----TTGGGGGCHHHHHHH
T ss_pred             EEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHHHHHHHHHhCCCC----cccccCCCHHHHHHH
Confidence            46666679999999999999999998764 5667778988554321100000000011110    01 123578899999


Q ss_pred             HHhCCCCeeEEEEc
Q 048196           91 ATGAGFSGTRFEWF  104 (115)
Q Consensus        91 l~~aGf~~~~~~~~  104 (115)
                      |.++||+.+++...
T Consensus       268 ~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          268 LLSNGWETASAVDM  281 (334)
T ss_dssp             HHTTTCSEEEEEEH
T ss_pred             HHHcCCCcceeecH
Confidence            99999998776554

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.02  E-value=0.0073  Score=44.22  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=34.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      .|+|++.++++  . ++....|+++.+.|+|||++++.+...+..
T Consensus       324 FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          324 CDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             CSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             CCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            59999887773  2 345678899999999999999998776654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.90  E-value=0.0082  Score=41.92  Aligned_cols=42  Identities=7%  Similarity=0.101  Sum_probs=31.7

Q ss_pred             CCCCCCCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||..+ +|  ..|+|++...   .+  +..++++++++.|+|||++++.+
T Consensus       179 gDa~~-l~d~~FDvV~~~a~---~~--d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          179 GDETV-IDGLEFDVLMVAAL---AE--PKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             SCGGG-GGGCCCSEEEECTT---CS--CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             Cchhh-CCCCCcCEEEECCC---cc--CHHHHHHHHHHHcCCCcEEEEEc
Confidence            45554 33  2499998654   23  35799999999999999999976

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=95.78  E-value=0.0029  Score=46.12  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=31.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      .|+|+.. ..|+++  +..+.|+++++.|+|||.+++.|..
T Consensus       289 FDlVisd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          289 FDIVIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             EEEEEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccEEEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence            4999865 567664  3578999999999999999998865

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=95.76  E-value=0.0055  Score=41.60  Aligned_cols=41  Identities=17%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+.+.++.  .|+|++     +.++.  .++++++.+.|+|||++++..
T Consensus       171 ~d~~~~~~~~~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          171 RDISEGFDEKDVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             CCGGGCCSCCSEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHcccCCccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence            566665553  499987     34443  588999999999999999976

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=95.76  E-value=0.018  Score=40.10  Aligned_cols=45  Identities=13%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCCC-CCCcccEEEeccccc---cCChHH-HHHHHHHHHhhCCCCCEEEE
Q 048196            3 DMFQ-NVPKGDAIFMKWILH---NWSDDH-CLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         3 d~~~-~~p~~D~v~~~~vlh---~~~d~~-~~~iL~~~~~aL~pgg~lii   47 (115)
                      |+++ +....|+|++...++   ...|.. ...+|+.+++.|+|||.+++
T Consensus       140 D~~~l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          140 DVFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             CTTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ccccCCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            6665 222469999876653   223332 23689999999999998877

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=95.69  E-value=0.013  Score=37.51  Aligned_cols=39  Identities=21%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             ccEEEeccccccCC----hHH-----HHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWS----DDH-----CLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~----d~~-----~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++...+|...    |..     ..++++++++.|+|||++++..
T Consensus       107 fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          107 IDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            49999887777532    221     2358999999999999998743

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.62  E-value=0.0048  Score=39.88  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||..+..+ .  .|+|++..++|++++        ++.+.|+|||++++.-.
T Consensus       132 ~d~~~~~~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          132 GDGWQGWQARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             SCGGGCCGGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEEC
T ss_pred             CCcccCCccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEc
Confidence            56655333 2  499999999999987        46789999999998543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.61  E-value=0.0059  Score=39.62  Aligned_cols=40  Identities=13%  Similarity=0.102  Sum_probs=31.1

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+..+++ .  .|+|++..++|++++        ++.+.|+|||++++.-
T Consensus       135 ~d~~~~~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          135 GDGTLGYEPLAPYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             SCGGGCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             CCcccCCCCCCCeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEE
Confidence            45544444 2  499999999999884        6788999999999864

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=95.55  E-value=0.051  Score=34.49  Aligned_cols=42  Identities=10%  Similarity=-0.104  Sum_probs=33.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHh--hCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYK--SIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~--aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...+|.. .++..++++++.+  .|+|||.+++......
T Consensus       114 fD~i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          114 VDLVLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CSEEEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             ccEEEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            4999998877654 4567899999998  9999999999665433

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.48  E-value=0.028  Score=36.52  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=44.1

Q ss_pred             CCCCCCC---CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQNV---PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~~~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+.+   +..|++++...+    +  .. +++++.+.|+|||++++.....                          
T Consensus       111 ~d~~~~~~~~~~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~--------------------------  157 (204)
T 3njr_A          111 GTAPAALADLPLPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL--------------------------  157 (204)
T ss_dssp             SCTTGGGTTSCCCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH--------------------------
T ss_pred             CchhhhcccCCCCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc--------------------------
Confidence            5666532   245999987644    2  23 9999999999999998844211                          


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                         .+..++.+++++.|+++.++
T Consensus       158 ---~~~~~~~~~l~~~g~~i~~i  177 (204)
T 3njr_A          158 ---ESETLLTQLHARHGGQLLRI  177 (204)
T ss_dssp             ---HHHHHHHHHHHHHCSEEEEE
T ss_pred             ---ccHHHHHHHHHhCCCcEEEE
Confidence               02357778888888877664

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=95.43  E-value=0.019  Score=39.20  Aligned_cols=36  Identities=11%  Similarity=0.061  Sum_probs=31.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCC---C--CCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIP---E--DGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~---p--gg~lii~   48 (115)
                      .|+|+++.++|+.++  ...+++.+.+.|+   |  ||+++++
T Consensus       164 fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          164 FQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             BSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             CCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            499999999988655  5789999999999   9  9998773

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.40  E-value=0.039  Score=35.91  Aligned_cols=38  Identities=13%  Similarity=-0.019  Sum_probs=28.5

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...     .+....+++++.+.|+|||.+++.+....
T Consensus       134 fD~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          134 FDFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             CSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             cCEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            488886543     33457899999999999998887665544

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=95.35  E-value=0.0076  Score=42.59  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=34.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCC-hHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWS-DDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~-d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||+.+ ++|.  .|+|++..+.|.+. .+....+++.+.+.|+|||.++.
T Consensus       122 ~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          122 GKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             SCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            57777 6663  49999877655442 23357899999999999999874

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=95.27  E-value=0.12  Score=34.44  Aligned_cols=78  Identities=6%  Similarity=-0.020  Sum_probs=54.5

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||.+++++.   .|++++..+    ..+....||..+.+.|+|+|++++. ..   .                       
T Consensus        73 ~d~l~~l~~~~~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq-~~---~-----------------------  121 (225)
T 3kr9_A           73 ANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQ-PN---N-----------------------  121 (225)
T ss_dssp             CSGGGGCCGGGCCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEE-ES---S-----------------------
T ss_pred             CchhhhcccCcCCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEE-CC---C-----------------------
Confidence            677776662   598887654    4455789999999999999998772 11   0                       


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc--C-CceEEEEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF--T-CNLWVRDFY  114 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~--~-~~~~lie~~  114 (115)
                          ..+..+++|.+.||.+.+..-+  . -.+.++.+.
T Consensus       122 ----~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~  156 (225)
T 3kr9_A          122 ----REDDLRIWLQDHGFQIVAESILEEAGKFYEILVVE  156 (225)
T ss_dssp             ----CHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred             ----CHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence                1357889999999998875432  2 345566554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.27  E-value=0.0086  Score=40.67  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||+.++++.  .|+|++     ++++.  .++|+++.+.|+|||++++..
T Consensus       169 ~d~~~~~~~~~fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          169 SDIADFISDQMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             SCTTTCCCSCCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEE
T ss_pred             CchhccCcCCCccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEe
Confidence            677775554  499987     45543  589999999999999999976

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.21  E-value=0.019  Score=35.84  Aligned_cols=63  Identities=11%  Similarity=0.137  Sum_probs=42.6

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      +|+.++++.  .|+|++..+      +....+++++++.  |||++++.+...+                          
T Consensus        90 ~d~~~~~~~~~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~--------------------------  135 (183)
T 2yxd_A           90 GRAEDVLDKLEFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE--------------------------  135 (183)
T ss_dssp             SCHHHHGGGCCCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH--------------------------
T ss_pred             CCccccccCCCCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc--------------------------
Confidence            344444443  599999888      2246788888887  9999998662110                          


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEE
Q 048196           80 KKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                         +..++.++++++||....+
T Consensus       136 ---~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          136 ---NAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             ---HHHHHHHHHHHTTCEEEEE
T ss_pred             ---cHHHHHHHHHHcCCeEEEE
Confidence               1357888899999766543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=95.21  E-value=0.0059  Score=43.60  Aligned_cols=50  Identities=10%  Similarity=0.121  Sum_probs=37.3

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      ||+.+ ++|. .|+|++..+.|.... .....+++++.+.|+|||.+++.+..
T Consensus       119 ~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          119 GSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             SCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             CchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            56666 4554 599999776666653 33677999999999999999876653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.21  E-value=0.0066  Score=52.78  Aligned_cols=82  Identities=11%  Similarity=0.087  Sum_probs=31.5

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|+.+++||.-++.  .+.|+++++.|+|||++++.+...... -..    ....++-.   ...++...+.++|.++
T Consensus      1312 ydlvia~~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~-~g~----~~~~~~~~---~r~~~~~~~~~~w~~~ 1381 (2512)
T 2vz8_A         1312 ADLLVCNCALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHP-LGE----MVGFLTSP---EQGGRHLLSQDQWESL 1381 (2512)
T ss_dssp             CCEEEEECC----------------------CCEEEEEEC----------------------------------CTTTTS
T ss_pred             eeEEEEcccccccccH--HHHHHHHHHhcCCCcEEEEEecccccc-ccc----cccccccc---cccCCcccCHHHHHHH
Confidence            4999999999976654  578999999999999999977532100 000    00000000   0011223467799999


Q ss_pred             HHhCCCCeeEEE
Q 048196           91 ATGAGFSGTRFE  102 (115)
Q Consensus        91 l~~aGf~~~~~~  102 (115)
                      |+++||..+...
T Consensus      1382 l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A         1382 FAGASLHLVALK 1393 (2512)
T ss_dssp             STTTTEEEEEEE
T ss_pred             HHhCCCceeeec
Confidence            999999887654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.17  E-value=0.011  Score=38.75  Aligned_cols=41  Identities=15%  Similarity=0.040  Sum_probs=31.5

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||+.+..+ .  .|+|++..++|++++        ++.+.|+|||++++...
T Consensus       123 ~d~~~~~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          123 GDGTLGYEEEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             SCGGGCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             CCcccccccCCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence            45555333 2  499999999999885        47789999999999753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.12  E-value=0.19  Score=38.62  Aligned_cols=88  Identities=16%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhc-ccCCC-ceeCCHHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMM-TQNPS-GKKRTKHEFLT   89 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-g~~rt~~e~~~   89 (115)
                      =++++--+|.+++.++..++|+.+.+ + |+|.+++.|.+.+..+..+. .+.. ...+... ..... ....+.++..+
T Consensus       219 tl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~f-~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~  294 (695)
T 2zwa_A          219 KVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEPF-SKQM-LAHFKRNDSPLQSVLKYNTIESQVQ  294 (695)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSHH-HHHH-HHHHHHTTCCCCGGGTCCSHHHHHH
T ss_pred             EEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCChH-HHHH-HHHHHHcCCCCCccccCCCHHHHHH
Confidence            45666679999999999999999984 5 68889899988775433321 1110 0111100 00001 12347899999


Q ss_pred             HHHhCCCCeeEEEE
Q 048196           90 LATGAGFSGTRFEW  103 (115)
Q Consensus        90 ll~~aGf~~~~~~~  103 (115)
                      .|+++||+.+....
T Consensus       295 ~~~~~Gw~~v~~~~  308 (695)
T 2zwa_A          295 RFNKLGFAYVNVGD  308 (695)
T ss_dssp             HHHHTTCCEEEEEE
T ss_pred             HHHHCCCCCcceee
Confidence            99999998766543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=95.08  E-value=0.057  Score=36.78  Aligned_cols=47  Identities=11%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+.. +.|. +|++++.-++|++.+.+....+ ++.++|++++.++-.+
T Consensus       158 ~D~~~~~~~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          158 QDVLCAPPAEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             CCTTTSCCCCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             eecccCCCCCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            57777 4454 5999999999999988777776 8999999997777766

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=95.07  E-value=0.023  Score=37.65  Aligned_cols=61  Identities=10%  Similarity=0.062  Sum_probs=43.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++..+    .+  ...+++.+.+.|+|||++++.+.    . ...                      ...+++.+.
T Consensus       142 fD~V~~~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g----~-~~~----------------------~~~~~~~~~  188 (240)
T 1xdz_A          142 YDIVTARAV----AR--LSVLSELCLPLVKKNGLFVALKA----A-SAE----------------------EELNAGKKA  188 (240)
T ss_dssp             EEEEEEECC----SC--HHHHHHHHGGGEEEEEEEEEEEC----C--CH----------------------HHHHHHHHH
T ss_pred             ccEEEEecc----CC--HHHHHHHHHHhcCCCCEEEEEeC----C-Cch----------------------HHHHHHHHH
Confidence            499998763    22  57899999999999999988521    0 000                      012577888


Q ss_pred             HHhCCCCeeEEEEc
Q 048196           91 ATGAGFSGTRFEWF  104 (115)
Q Consensus        91 l~~aGf~~~~~~~~  104 (115)
                      ++++||+..++...
T Consensus       189 l~~~g~~~~~~~~~  202 (240)
T 1xdz_A          189 ITTLGGELENIHSF  202 (240)
T ss_dssp             HHHTTEEEEEEEEE
T ss_pred             HHHcCCeEeEEEEE
Confidence            99999998876543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=94.80  E-value=0.062  Score=35.90  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      .|+|++...     .+.....++++.+.|+|||.+++-+.....
T Consensus       137 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  175 (242)
T 3r3h_A          137 FDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred             EeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence            498887543     344567899999999999999987766554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=94.77  E-value=0.061  Score=34.83  Aligned_cols=47  Identities=13%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CCCCC-C--CCc--ccEEEeccccccCChH------HHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQ-N--VPK--GDAIFMKWILHNWSDD------HCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~-~--~p~--~D~v~~~~vlh~~~d~------~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||..+ +  ++.  .|+|++....+.....      ....+++++.+.|+|||.+++.
T Consensus        98 ~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A           98 VDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             CCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            55655 3  443  4999987554322111      1257999999999999999884

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=94.72  E-value=0.0099  Score=39.51  Aligned_cols=41  Identities=10%  Similarity=0.138  Sum_probs=31.2

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+.+ +++.  .|+|++     ++++.  .++|+++.+.|+|||++++..
T Consensus       155 ~d~~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          155 GKLEEAELEEAAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             SCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred             CchhhcCCCCCCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEe
Confidence            56666 3653  499987     35543  488999999999999999976

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=94.59  E-value=0.017  Score=38.12  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=30.7

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||+..+++.   .|+|++..++|++++        ++.+.|+|||++++.-
T Consensus       147 ~d~~~~~~~~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          147 GDGSKGFPPKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             CCcccCCCCCCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEE
Confidence            455335542   499999999999885        5678999999999854

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=94.59  E-value=0.018  Score=37.81  Aligned_cols=39  Identities=18%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||..++++.   .|+|+....+|+++        +++.+.|+|||++++.
T Consensus       152 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          152 GDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVP  193 (227)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred             CCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEE
Confidence            455554443   39999999999876        5678899999999885

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.55  E-value=0.036  Score=37.10  Aligned_cols=42  Identities=14%  Similarity=0.036  Sum_probs=31.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      +|+.+ +++.  .|+|+...+.         ..++++++.|+|||++++.....
T Consensus       137 ~d~~~~~~~~~~fD~v~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          137 ASSHRLPFSDTSMDAIIRIYAP---------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CCTTSCSBCTTCEEEEEEESCC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             cchhhCCCCCCceeEEEEeCCh---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence            45555 4443  3999986653         35889999999999999987654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=94.54  E-value=0.019  Score=40.20  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=33.5

Q ss_pred             CCCCC-CCC-c-ccEEEeccccccCCh-HHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVP-K-GDAIFMKWILHNWSD-DHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p-~-~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||+.+ ++| . .|+|++..+.+.+.. +....+++++.+.|+|||+++.
T Consensus        94 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1           94 GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             SCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            56666 566 3 499998866554432 2356899999999999999974

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=94.46  E-value=0.031  Score=39.29  Aligned_cols=45  Identities=18%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             CCCCC-CCC-c-ccEEEeccccccCC-hHHHHHHHHHHHhhCCCCCEEE
Q 048196            2 DDMFQ-NVP-K-GDAIFMKWILHNWS-DDHCLKLLKIYYKSIPEDGKVI   46 (115)
Q Consensus         2 gd~~~-~~p-~-~D~v~~~~vlh~~~-d~~~~~iL~~~~~aL~pgg~li   46 (115)
                      ||+.+ ++| . .|+|++..+.+.+. ......+|+++.+.|+|||+++
T Consensus       120 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          120 GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            56766 566 3 49999876432221 2335789999999999999987

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=94.44  E-value=0.017  Score=36.75  Aligned_cols=40  Identities=20%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             ccEEEecccccc----CChHH-----HHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHN----WSDDH-----CLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~----~~d~~-----~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++...+|.    ..|..     ..++++++.+.|+|||++++...
T Consensus        98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            499998654442    22321     15889999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=94.42  E-value=0.049  Score=35.98  Aligned_cols=38  Identities=13%  Similarity=0.164  Sum_probs=29.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...     .+....+++++.+.|+|||++++.+...+
T Consensus       148 fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  185 (239)
T 2hnk_A          148 IDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADNVLWD  185 (239)
T ss_dssp             EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             cCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence            499987643     33456889999999999999998665444

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=94.41  E-value=0.021  Score=37.34  Aligned_cols=39  Identities=13%  Similarity=0.130  Sum_probs=30.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      .|+|++....|++.+  ..++++.+ +.|+|||.+++.+...
T Consensus       135 fD~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          135 LDMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             CSEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             eEEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCC
Confidence            499999887777654  35677777 8999999998865543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=94.27  E-value=0.06  Score=35.96  Aligned_cols=38  Identities=13%  Similarity=0.045  Sum_probs=29.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++..     +.+.....++++.+.|+|||.+++.+....
T Consensus       137 fD~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          137 FDLIFIDA-----DKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             CSEEEECS-----CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             eEEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            49998743     344467899999999999999988665444

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.15  E-value=0.023  Score=39.43  Aligned_cols=41  Identities=27%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||+.+..+ .  .|+|++..++|+++        +++.+.|+|||++++...
T Consensus       133 ~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          133 GDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred             CChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence            45555332 2  49999999999988        356779999999999753

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=94.03  E-value=0.044  Score=38.42  Aligned_cols=48  Identities=13%  Similarity=0.189  Sum_probs=36.7

Q ss_pred             CCCCCCCC-c-ccEEEeccccccCChHHH----------------HHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVP-K-GDAIFMKWILHNWSDDHC----------------LKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p-~-~D~v~~~~vlh~~~d~~~----------------~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||.+++.+ . .|+|+..--++.++.++.                ..+++++.+.|+|||+++++-
T Consensus       191 ~D~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          191 QDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             SCTTSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            67777544 3 599999888777765442                268999999999999998854

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=93.99  E-value=0.029  Score=36.00  Aligned_cols=41  Identities=7%  Similarity=0.035  Sum_probs=29.9

Q ss_pred             CCCCCCCC-c-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP-K-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      +|+.+..+ . .|+|++.. +++     ...+++++++.|+|||.+++.
T Consensus       122 ~d~~~~~~~~~~D~i~~~~-~~~-----~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          122 SRVEEFPSEPPFDGVISRA-FAS-----LNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             CCTTTSCCCSCEEEEECSC-SSS-----HHHHHHHHTTSEEEEEEEEEE
T ss_pred             cchhhCCccCCcCEEEEec-cCC-----HHHHHHHHHHhcCCCcEEEEE
Confidence            56666333 2 49998643 222     468999999999999999986

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=93.89  E-value=0.094  Score=35.69  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CCCCCCCC--cccEEEeccccccCCh----HH-HHHHHHHHHhhCCCCC--EEEEEeee
Q 048196            2 DDMFQNVP--KGDAIFMKWILHNWSD----DH-CLKLLKIYYKSIPEDG--KVIVVESI   51 (115)
Q Consensus         2 gd~~~~~p--~~D~v~~~~vlh~~~d----~~-~~~iL~~~~~aL~pgg--~lii~d~~   51 (115)
                      ||+.+ +|  ..|+|++... |..++    +. ..++|+.+.+.|+|||  .+++..+.
T Consensus       131 ~D~~~-l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          131 VDIHT-LPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCTTT-SCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             cCHhH-CCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            57666 33  3599998766 43322    11 2358899999999999  88885543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.76  E-value=0.089  Score=34.57  Aligned_cols=43  Identities=21%  Similarity=0.148  Sum_probs=31.3

Q ss_pred             CCCCCCC-Cc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196            2 DDMFQNV-PK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus         2 gd~~~~~-p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      +|+.+.. +.  .|+|++     +.++  ...+++++.+.|+|||++++....
T Consensus       147 ~d~~~~~~~~~~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          147 VDFKDAEVPEGIFHAAFV-----DVRE--PWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             SCTTTSCCCTTCBSEEEE-----CSSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             cChhhcccCCCcccEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5666644 43  499986     2333  257899999999999999997643

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=93.76  E-value=0.038  Score=37.26  Aligned_cols=21  Identities=5%  Similarity=0.142  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhhCCCCCEEEEE
Q 048196           28 CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ...+++.+.+.|+|||+++++
T Consensus       149 ~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          149 FEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEE
Confidence            578999999999999999884

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.68  E-value=0.078  Score=34.43  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=29.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++..     +.+....+++++.+.|+|||.+++.+....
T Consensus       141 fD~v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          141 YDLIYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             ccEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            49888543     234467899999999999999998776654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=93.30  E-value=0.084  Score=34.40  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.6

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 048196           29 LKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ..+|+++++.|+|||.+++..
T Consensus       133 ~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          133 SHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            578999999999999998853

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=93.12  E-value=0.57  Score=31.34  Aligned_cols=78  Identities=5%  Similarity=-0.040  Sum_probs=54.6

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||.++.++.   .|++++..+.    -+....||....+.|+++|++++.- +                           
T Consensus        79 gD~l~~~~~~~~~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp-~---------------------------  126 (230)
T 3lec_A           79 ANGLSAFEEADNIDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQP-N---------------------------  126 (230)
T ss_dssp             CSGGGGCCGGGCCCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEE-S---------------------------
T ss_pred             CchhhccccccccCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEEC-C---------------------------
Confidence            677875542   5998876543    4557889999999999999887622 0                           


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc---CCceEEEEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF---TCNLWVRDFY  114 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~---~~~~~lie~~  114 (115)
                         ....++++||.+.||.+.+..-+   +-.+.++.+.
T Consensus       127 ---~~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~  162 (230)
T 3lec_A          127 ---NREDDLRKWLAANDFEIVAEDILTENDKRYEILVVK  162 (230)
T ss_dssp             ---SCHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEE
T ss_pred             ---CChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence               01468899999999999876543   2456666654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=93.10  E-value=0.031  Score=37.69  Aligned_cols=42  Identities=14%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||+.+ +++.  .|+|++     +.++.  .++++++.+.|+|||++++...
T Consensus       160 ~d~~~~~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          160 SDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             SCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             CchHhcCCCCCceeEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence            56655 3443  499987     23332  3789999999999999999764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=93.03  E-value=0.029  Score=36.85  Aligned_cols=37  Identities=11%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      .|+|++....+     ...++++++.+.|+|||++++.+...
T Consensus       127 fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          127 FDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             EEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred             ccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence            49999876654     35789999999999999999876543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=92.99  E-value=0.2  Score=34.95  Aligned_cols=87  Identities=10%  Similarity=-0.072  Sum_probs=52.2

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-hhhhc-hhc-cch--hcccCCCcee-CC-H
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-VSKRN-SQL-DVL--MMTQNPSGKK-RT-K   84 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-~~~~~-~~~-~l~--~~~~~~~g~~-rt-~   84 (115)
                      =++++--++|++++++..++++.+.+.+.||+.|++ |.+.++.+.... ..... ..+ ...  .-+....... ++ .
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  259 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENR  259 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTC
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCCh
Confidence            466777899999999999999999999889887755 655443311100 00000 000 000  0000001122 26 7


Q ss_pred             HHHHHHHHhCCCCee
Q 048196           85 HEFLTLATGAGFSGT   99 (115)
Q Consensus        85 ~e~~~ll~~aGf~~~   99 (115)
                      ++..++|.++||+.+
T Consensus       260 ~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          260 AVVADWLNRHGWRAT  274 (310)
T ss_dssp             CCHHHHHTTTTEEEE
T ss_pred             HHHHHHHHHCcCccc
Confidence            899999999999887

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=92.89  E-value=0.1  Score=35.73  Aligned_cols=47  Identities=11%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             CCCCCCCC--cccEEEeccccccCCh----HH-HHHHHHHHHhhCCCCC--EEEEEee
Q 048196            2 DDMFQNVP--KGDAIFMKWILHNWSD----DH-CLKLLKIYYKSIPEDG--KVIVVES   50 (115)
Q Consensus         2 gd~~~~~p--~~D~v~~~~vlh~~~d----~~-~~~iL~~~~~aL~pgg--~lii~d~   50 (115)
                      ||+.+ +|  ..|+|++... +..+.    .. ..++|+.+.+.|+|||  .+++..+
T Consensus       139 ~D~~~-l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          139 VDVTK-MEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CCGGG-CCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CcHhh-CCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            56655 33  3599998766 43322    11 2358899999999999  8887443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=92.75  E-value=0.053  Score=34.92  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEee
Q 048196           28 CLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      +..+|+.+.+.|+|||++++.-+
T Consensus       118 ~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A          118 GQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHccCCCEEEEEEc
Confidence            46788999999999999987544

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=92.71  E-value=0.14  Score=37.31  Aligned_cols=53  Identities=9%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             CCCCC-C--CC-c-ccEEEe------ccccccCChHH--------------HHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196            2 DDMFQ-N--VP-K-GDAIFM------KWILHNWSDDH--------------CLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus         2 gd~~~-~--~p-~-~D~v~~------~~vlh~~~d~~--------------~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      +|+.+ +  ++ . .|+|++      ..+++..+|..              ..++|+++.+.|+|||++++.++....
T Consensus       317 ~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~  394 (450)
T 2yxl_A          317 KDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK  394 (450)
T ss_dssp             SCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             cChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            56555 2  44 3 499996      34666555431              168999999999999999998875543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=92.43  E-value=0.097  Score=32.19  Aligned_cols=38  Identities=11%  Similarity=-0.045  Sum_probs=26.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHH--hhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYY--KSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~--~aL~pgg~lii~d~~~   52 (115)
                      .|+|++...+| -..+   ++++.+.  +.|+|||.+++.....
T Consensus       111 ~D~i~~~~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          111 FTVAFMAPPYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEEEEECCCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             eEEEEECCCCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence            59999988877 2222   3444444  8999999998865443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=92.35  E-value=0.021  Score=37.73  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=27.9

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...     .+....+++++.+.|+|||.+++-+....
T Consensus       143 fD~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~~~~  180 (232)
T 3ntv_A          143 YDMIFIDAA-----KAQSKKFFEIYTPLLKHQGLVITDNVLYH  180 (232)
T ss_dssp             EEEEEEETT-----SSSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred             ccEEEEcCc-----HHHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence            499985532     23357899999999999999988554443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=92.29  E-value=0.12  Score=34.38  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHh-hCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYK-SIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~-aL~pgg~lii~d~   50 (115)
                      .|+|++... |.    +..++|+++.+ .|+|||++++.|.
T Consensus       153 fD~I~~d~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          153 HPLIFIDNA-HA----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SSEEEEESS-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCEEEECCc-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            499887654 52    34679999996 9999999999765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=91.91  E-value=0.022  Score=37.92  Aligned_cols=20  Identities=30%  Similarity=0.361  Sum_probs=18.1

Q ss_pred             HHHHHHHHhhCCCCCEEEEE
Q 048196           29 LKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~   48 (115)
                      ..+++++.+.|+|||.+++.
T Consensus       153 ~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          153 NTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            48999999999999999984

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=91.53  E-value=0.066  Score=34.52  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=28.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++..     +......+++++.+.|+|||.+++.+....
T Consensus       127 fD~v~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  164 (210)
T 3c3p_A          127 IDILFMDC-----DVFNGADVLERMNRCLAKNALLIAVNALRR  164 (210)
T ss_dssp             EEEEEEET-----TTSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred             CCEEEEcC-----ChhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence            58887652     223457899999999999999988665443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=91.52  E-value=0.14  Score=34.01  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=18.4

Q ss_pred             HHHHHHHHhhCCCCCEEEEEe
Q 048196           29 LKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ..+|+++++.|+|||.+++.-
T Consensus       148 ~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          148 PTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEEe
Confidence            379999999999999998853

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=91.43  E-value=0.087  Score=36.04  Aligned_cols=38  Identities=11%  Similarity=0.101  Sum_probs=27.6

Q ss_pred             ccEEEeccccccCChHHH--HHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHC--LKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++....+..+.+..  .+++++++++|+|||.+++.
T Consensus       152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            499998544333222222  68999999999999999885

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=91.26  E-value=0.1  Score=33.86  Aligned_cols=31  Identities=16%  Similarity=0.132  Sum_probs=25.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++...++++.        +++.+.|+|||++++..
T Consensus       152 fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          152 YDAIHVGAAAPVVP--------QALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred             cCEEEECCchHHHH--------HHHHHhcCCCcEEEEEE
Confidence            49999999887765        46788999999999964

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=91.01  E-value=0.34  Score=33.10  Aligned_cols=45  Identities=11%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             CCCCCCCC-cc---cEEEec------------cccccCChH------HHHHHHHHHH-hhCCCCCEEEE
Q 048196            2 DDMFQNVP-KG---DAIFMK------------WILHNWSDD------HCLKLLKIYY-KSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~~~p-~~---D~v~~~------------~vlh~~~d~------~~~~iL~~~~-~aL~pgg~lii   47 (115)
                      ||++++++ ..   |+|++.            .+. +.+..      +...+++++. +.|+|||.+++
T Consensus       180 ~D~~~~~~~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          180 GEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             SSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CcchhhcccccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence            56776543 45   999885            333 23321      1237899999 99999999987

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=90.79  E-value=0.088  Score=34.25  Aligned_cols=38  Identities=11%  Similarity=0.156  Sum_probs=28.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...     ......+++++.+.|+|||.+++.+....
T Consensus       146 ~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  183 (229)
T 2avd_A          146 FDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLWR  183 (229)
T ss_dssp             EEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             ccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence            498887432     33457899999999999999998775543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=90.75  E-value=0.27  Score=30.61  Aligned_cols=39  Identities=5%  Similarity=-0.036  Sum_probs=27.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHH--HhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIY--YKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~--~~aL~pgg~lii~d~~~   52 (115)
                      .|+|++...+|....+   ..++.+  .+.|+|||.+++.....
T Consensus       117 fD~i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          117 FDLVLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             EEEEEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCEEEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCc
Confidence            4999998876644443   444555  77899999998865443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=90.61  E-value=0.13  Score=33.19  Aligned_cols=39  Identities=10%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHH--HhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIY--YKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~--~~aL~pgg~lii~d~~~   52 (115)
                      .|+|++...+| ..+  ..++++.+  .+.|+|||.+++.....
T Consensus       126 fD~I~~~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          126 FDVVFLDPPFH-FNL--AEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EEEEEECCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCEEEECCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            69999887766 333  46788888  45699999998866543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=90.58  E-value=0.12  Score=35.20  Aligned_cols=39  Identities=10%  Similarity=0.051  Sum_probs=26.5

Q ss_pred             ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++....|..+...  ..++++++++.|+|||.+++..
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            49998755443222222  2688999999999999998863

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=90.55  E-value=0.21  Score=36.11  Aligned_cols=43  Identities=12%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             ccEEEe------ccccccCChH-------H-------HHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFM------KWILHNWSDD-------H-------CLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~------~~vlh~~~d~-------~-------~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++      ..+++..++.       +       ..++|+++.+.|+|||++++..+...
T Consensus       316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            499986      2455555542       1       25899999999999999999886554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=90.39  E-value=0.2  Score=33.45  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=28.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...     .......++++.+.|+|||.+++-+....
T Consensus       157 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  194 (247)
T 1sui_A          157 YDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLWN  194 (247)
T ss_dssp             BSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTGG
T ss_pred             EEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCcC
Confidence            499987533     23357899999999999999987654443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=90.24  E-value=0.22  Score=34.58  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .++|+++.+.|+|||++++..+...
T Consensus       226 ~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          226 MRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            6899999999999999998775443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=90.05  E-value=0.13  Score=32.03  Aligned_cols=40  Identities=10%  Similarity=0.069  Sum_probs=27.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHH--hhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYY--KSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~--~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...+|.   ....++++.+.  +.|+|||.+++......
T Consensus       101 fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          101 FDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             EEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            499998876643   22355666665  88999999988665433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=90.02  E-value=0.43  Score=33.40  Aligned_cols=48  Identities=15%  Similarity=0.063  Sum_probs=31.2

Q ss_pred             CCCCC-CCC-c-ccEEEeccccccCCh--H----HHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVP-K-GDAIFMKWILHNWSD--D----HCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p-~-~D~v~~~~vlh~~~d--~----~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      +|+.+ +.+ . .|+|++.--++....  .    ...++++++++.|+|||++++..
T Consensus       261 ~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          261 ADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT  317 (354)
T ss_dssp             CCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             CChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            56666 333 2 399988544332111  1    13689999999999999999963

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=89.88  E-value=0.12  Score=33.96  Aligned_cols=38  Identities=5%  Similarity=0.016  Sum_probs=25.7

Q ss_pred             cEEEeccccccCChHHH------HHHHHHHHhhCCCCCEEEEEe
Q 048196           12 DAIFMKWILHNWSDDHC------LKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~------~~iL~~~~~aL~pgg~lii~d   49 (115)
                      |.|++............      ..+++.+++.|+|||.+++..
T Consensus       107 d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          107 RMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             EEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             heEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            88887644332222111      259999999999999998854

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=89.67  E-value=0.18  Score=32.72  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++...+|++.        +++.+.|+|||++++.-.
T Consensus       163 fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          163 FDAIHVGASASELP--------EILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             EEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred             cCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence            49999999998754        677889999999998643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=89.57  E-value=0.14  Score=33.68  Aligned_cols=38  Identities=13%  Similarity=0.167  Sum_probs=29.1

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .|+|++...     .+....+++++.+.|+|||.+++.+....
T Consensus       149 fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          149 FDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             cCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            498886543     34467899999999999999988765544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=89.40  E-value=0.17  Score=35.31  Aligned_cols=38  Identities=13%  Similarity=0.092  Sum_probs=23.5

Q ss_pred             ccEEEeccccccCChHHH---HHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWSDDHC---LKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~---~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++... +.+.....   .++++++++.|+|||.+++..
T Consensus       182 fD~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          182 FDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            499997543 33332221   689999999999999998853

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=89.12  E-value=0.18  Score=35.00  Aligned_cols=39  Identities=5%  Similarity=0.031  Sum_probs=28.9

Q ss_pred             ccEEEecccccc---CChHH--HHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHN---WSDDH--CLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~---~~d~~--~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++....|.   -+.+.  ..+++++++++|+|||.+++.-
T Consensus       152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            499998766554   11111  3689999999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=88.99  E-value=0.2  Score=35.16  Aligned_cols=40  Identities=8%  Similarity=0.124  Sum_probs=28.6

Q ss_pred             ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEEee
Q 048196           11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      .|+|++....|......  ..++++++++.|+|||.+++.-.
T Consensus       160 fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          160 RDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             EEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            49999865444322221  26899999999999999988654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=88.77  E-value=0.19  Score=33.27  Aligned_cols=37  Identities=16%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      .|+|++..     +......+++++.+.|+|||.+++-+...
T Consensus       148 fD~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~~~  184 (237)
T 3c3y_A          148 YDFGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNTLW  184 (237)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred             cCEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            49888642     23446789999999999999987755443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=88.62  E-value=0.49  Score=34.94  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      .++|+++.+.|+|||+|++..+...
T Consensus       226 ~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          226 RELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccCC
Confidence            5789999999999999998776443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=88.29  E-value=0.28  Score=34.05  Aligned_cols=42  Identities=17%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             CCCCCC---CCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQN---VPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~~---~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||+.+.   ++.  .|+|++..     ++.  ..+++++.+.|+|||++++...
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             SCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEEEEEEEEEES
T ss_pred             CChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCCCcEEEEEeC
Confidence            455552   343  49998732     221  2388999999999999998765

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=88.09  E-value=0.18  Score=34.48  Aligned_cols=44  Identities=18%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             CCCCC-CCCcccEEEeccccccCChHHHHHHHHH--------------H--HhhCCCCCEEE
Q 048196            2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKI--------------Y--YKSIPEDGKVI   46 (115)
Q Consensus         2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~--------------~--~~aL~pgg~li   46 (115)
                      ||+.+ ++|..|+++. +...+|+.+....+|..              +  +.+|+|||+++
T Consensus        84 ~D~~~~~~~~fD~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           84 GDVLKTDLPFFDTCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             SCTTTSCCCCCSEEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cceecccchhhcEEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            67777 6666798887 55556776666666642              2  35899999753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=88.05  E-value=0.23  Score=32.59  Aligned_cols=37  Identities=11%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      .|+|++....     ......++++.+.|+|||.+++.+...
T Consensus       130 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          130 YQLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             EEEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             cCeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            4999875432     234678999999999999998855544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=87.80  E-value=0.0047  Score=40.83  Aligned_cols=77  Identities=12%  Similarity=0.019  Sum_probs=46.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|++...+|+.++..  ..+.++++.|+|||.+++.... ...+.            ....    --+....+++..+
T Consensus       145 ~D~v~~~~~~~~~~~~~--~~~~~~~~~L~pgG~~i~~~~~-~~~~~------------~~~~----lp~~~~~~~~~~~  205 (241)
T 3gdh_A          145 ADVVFLSPPWGGPDYAT--AETFDIRTMMSPDGFEIFRLSK-KITNN------------IVYF----LPRNADIDQVASL  205 (241)
T ss_dssp             CSEEEECCCCSSGGGGG--SSSBCTTTSCSSCHHHHHHHHH-HHCSC------------EEEE----EETTBCHHHHHHT
T ss_pred             CCEEEECCCcCCcchhh--hHHHHHHhhcCCcceeHHHHHH-hhCCc------------eEEE----CCCCCCHHHHHHH
Confidence            49999999999877653  3677888999999995542211 10000            0000    0112346788888


Q ss_pred             HHhCCCCeeEEEEcCC
Q 048196           91 ATGAGFSGTRFEWFTC  106 (115)
Q Consensus        91 l~~aGf~~~~~~~~~~  106 (115)
                      +...|...++.....+
T Consensus       206 l~~~g~~~i~~~~~~~  221 (241)
T 3gdh_A          206 AGPGGQVEIEQNFLNN  221 (241)
T ss_dssp             TCTTCCEEEEEEEETT
T ss_pred             hccCCCEEEEehhhcC
Confidence            8877755554444443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=87.75  E-value=0.78  Score=31.49  Aligned_cols=69  Identities=10%  Similarity=0.127  Sum_probs=44.4

Q ss_pred             CCCCCCCC--cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVP--KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||.++-.+  .+|.|++..-.      .+.+.|..+.+.|+|||.|.+.+++..+...                      
T Consensus       182 ~D~~~~~~~~~~D~Vi~~~p~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~----------------------  233 (278)
T 3k6r_A          182 MDNRDFPGENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMP----------------------  233 (278)
T ss_dssp             SCTTTCCCCSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT----------------------
T ss_pred             CcHHHhccccCCCEEEECCCC------cHHHHHHHHHHHcCCCCEEEEEeeecccccc----------------------
Confidence            56666333  35988765321      1346788888899999999888776443211                      


Q ss_pred             eeCCHHHHHHHHHhCCCCee
Q 048196           80 KKRTKHEFLTLATGAGFSGT   99 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~   99 (115)
                       ....+.++++.++.|++..
T Consensus       234 -~~~~e~i~~~~~~~g~~v~  252 (278)
T 3k6r_A          234 -REPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             -TTTHHHHHHHHHHTTCEEE
T ss_pred             -hhHHHHHHHHHHHcCCcEE
Confidence             0224567778888998753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=87.10  E-value=0.41  Score=35.31  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             HHHHHHHHhhCCCCCEEEEEeeec
Q 048196           29 LKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      .++|+++.+.|+|||+|+...+..
T Consensus       209 ~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          209 KALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHhcCCCcEEEEEeccC
Confidence            789999999999999999876544

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=86.96  E-value=0.26  Score=34.15  Aligned_cols=39  Identities=13%  Similarity=0.022  Sum_probs=25.2

Q ss_pred             ccEEEeccccccCChH--HHHHHHHHHHhhCCCCCEEEEEe
Q 048196           11 GDAIFMKWILHNWSDD--HCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      .|+|++....+..+..  ...++++++++.|+|||.+++..
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            4999985443322211  23578999999999999998865

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=86.86  E-value=0.62  Score=31.44  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             HHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196           28 CLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus        28 ~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      ..++|+++.+.|+|||++++......
T Consensus       190 ~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          190 QKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEECCCC
Confidence            37899999999999999998776544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=86.86  E-value=0.24  Score=33.57  Aligned_cols=47  Identities=15%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             CCCCCC-CC-cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196            2 DDMFQN-VP-KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus         2 gd~~~~-~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      ||..+. .+ ..|+|++....      ...++++++.+.|+|||.+++.+....+
T Consensus       176 ~d~~~~~~~~~~D~Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~~~  224 (272)
T 3a27_A          176 ADNRDVELKDVADRVIMGYVH------KTHKFLDKTFEFLKDRGVIHYHETVAEK  224 (272)
T ss_dssp             SCGGGCCCTTCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             CChHHcCccCCceEEEECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCccc
Confidence            455553 22 24999876543      3467899999999999999998876543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=86.48  E-value=0.39  Score=32.51  Aligned_cols=20  Identities=20%  Similarity=0.069  Sum_probs=14.2

Q ss_pred             HHHHHHHhCCCCeeEEEEcC
Q 048196           86 EFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~~  105 (115)
                      .+++.|.+|||++.++...+
T Consensus       217 ~vrr~L~~aGF~v~~~~g~~  236 (257)
T 2qy6_A          217 FVRRGLQEAGFTMQKRKGFG  236 (257)
T ss_dssp             HHHHHHHHHTEEEEEECCST
T ss_pred             HHHHHHHHCCCEEEeCCCCC
Confidence            56778888999877654443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=86.38  E-value=0.8  Score=32.53  Aligned_cols=20  Identities=15%  Similarity=0.255  Sum_probs=17.4

Q ss_pred             HHHHHHHhhCCCCCEEEEEe
Q 048196           30 KLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        30 ~iL~~~~~aL~pgg~lii~d   49 (115)
                      .+++++.+.|+|||+++++-
T Consensus       145 ~fl~~~~~~Lk~~G~~~~i~  164 (421)
T 2ih2_A          145 AFLEKAVRLLKPGGVLVFVV  164 (421)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEE
Confidence            66899999999999998854

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=86.27  E-value=0.28  Score=34.53  Aligned_cols=38  Identities=11%  Similarity=-0.006  Sum_probs=26.6

Q ss_pred             ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++...-+..+.+.  ..+++++++++|+|||.+++.
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            49999754321111111  478999999999999999885

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=86.08  E-value=0.47  Score=30.45  Aligned_cols=39  Identities=5%  Similarity=0.124  Sum_probs=27.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhh--CCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKS--IPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~a--L~pgg~lii~d~~~   52 (115)
                      .|+|++...+| ..+  ..++++.+.+.  |+|||.+++.....
T Consensus       123 fD~V~~~~p~~-~~~--~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          123 HNIVFVDPPFR-RGL--LEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             EEEEEECCSSS-TTT--HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCEEEECCCCC-CCc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            49999887766 332  35677777664  99999998766543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=86.07  E-value=0.34  Score=33.75  Aligned_cols=37  Identities=11%  Similarity=0.184  Sum_probs=26.4

Q ss_pred             ccEEEeccccccCCh-HH--HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSD-DH--CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d-~~--~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++... +.+.. +.  ..++++++++.|+|||.+++.
T Consensus       190 fDvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          190 YDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EEEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            499997542 22221 11  168999999999999999885

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=85.86  E-value=0.68  Score=29.34  Aligned_cols=37  Identities=8%  Similarity=0.048  Sum_probs=23.3

Q ss_pred             CCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhC
Q 048196            2 DDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSI   39 (115)
Q Consensus         2 gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL   39 (115)
                      ||+.+ +|. .|+|++...+|++++....++++++.+.+
T Consensus       102 ~d~~~-~~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          102 ADVSE-ISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CCGGG-CCCCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred             CcHHH-CCCCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence            45555 343 59999999999998765678899999887

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=85.31  E-value=0.21  Score=34.02  Aligned_cols=38  Identities=16%  Similarity=0.042  Sum_probs=26.8

Q ss_pred             ccEEEeccccccCChHH--HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDH--CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++....+..+.+.  ..+++++++++|+|||.+++.
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            49999854433322111  257999999999999999885

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=85.25  E-value=0.28  Score=33.77  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=24.2

Q ss_pred             ccEEEeccccccCChH---HHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDD---HCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++...-+.....   ...++++++++.|+|||.+++.
T Consensus       164 fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          164 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            4999864221101111   1268999999999999999885

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=85.00  E-value=0.39  Score=34.88  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=33.6

Q ss_pred             CCCCC-CCC-cccEEEeccccccCChH---------------HHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQ-NVP-KGDAIFMKWILHNWSDD---------------HCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~-~~p-~~D~v~~~~vlh~~~d~---------------~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||.+. +.. ..|+|+..--++.....               .....++++.+.|+|||++.++-+
T Consensus       243 gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          243 EDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            67777 333 35999987555543211               124789999999999999988653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=84.63  E-value=0.38  Score=32.19  Aligned_cols=61  Identities=5%  Similarity=-0.097  Sum_probs=41.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|+++.+-    +  ...+++.+.+.|+|||++++....   . ..   .                    ...++.+.
T Consensus       152 fD~I~s~a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~---~-~~---~--------------------e~~~~~~~  198 (249)
T 3g89_A          152 YARAVARAVA----P--LCVLSELLLPFLEVGGAAVAMKGP---R-VE---E--------------------ELAPLPPA  198 (249)
T ss_dssp             EEEEEEESSC----C--HHHHHHHHGGGEEEEEEEEEEECS---C-CH---H--------------------HHTTHHHH
T ss_pred             ceEEEECCcC----C--HHHHHHHHHHHcCCCeEEEEEeCC---C-cH---H--------------------HHHHHHHH
Confidence            4999986542    2  358899999999999999885421   1 00   0                    01356667


Q ss_pred             HHhCCCCeeEEEEc
Q 048196           91 ATGAGFSGTRFEWF  104 (115)
Q Consensus        91 l~~aGf~~~~~~~~  104 (115)
                      ++..||+..++.++
T Consensus       199 l~~~G~~~~~~~~~  212 (249)
T 3g89_A          199 LERLGGRLGEVLAL  212 (249)
T ss_dssp             HHHHTEEEEEEEEE
T ss_pred             HHHcCCeEEEEEEe
Confidence            77889998887665

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=83.51  E-value=0.65  Score=33.31  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=31.2

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||+.+ .+|+ .|+++.-++-+.+..+ ....++....+-|+|||+++-
T Consensus       139 ~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          139 GPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             SCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            56666 6775 6999875443333333 356778877889999998764

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=82.81  E-value=0.78  Score=28.27  Aligned_cols=19  Identities=26%  Similarity=0.434  Sum_probs=17.8

Q ss_pred             HHHHHHHHhhCCCCCEEEE
Q 048196           29 LKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus        29 ~~iL~~~~~aL~pgg~lii   47 (115)
                      +.+++.+.++|+|||++.-
T Consensus        78 r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           78 KKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             HHHHHHHHTTCCTTCCEEC
T ss_pred             HHHHHHHHHHhCCCCEEEe
Confidence            7999999999999999976

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=81.97  E-value=0.6  Score=31.59  Aligned_cols=31  Identities=29%  Similarity=0.272  Sum_probs=24.2

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++.     .+|+.  ..+++++++|+|||.+++.
T Consensus       140 fD~Ii~d-----~~dp~--~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          140 YDLIFCL-----QEPDI--HRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             EEEEEES-----SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred             CCEEEEC-----CCChH--HHHHHHHHhcCCCcEEEEE
Confidence            4888864     34432  4899999999999999885

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=81.12  E-value=2.7  Score=29.34  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhhCCCCCEEEEEeee
Q 048196           27 HCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus        27 ~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      ...++++++.+.|+|||.+++....
T Consensus       250 ~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          250 HLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCcCcEEEEEECC
Confidence            4578999999999999998775543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	1e-25
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-23
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	8e-22
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	8e-09
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	9e-07

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 94.4 bits (234), Expect = 1e-25
 Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 3   DMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVS 62
           DMF +VP+GDA+ +K + HNWSD+ C++ L   +K++  +GKVI+VE ILPE P TS  S
Sbjct: 132 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEES 191

Query: 63  KRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCN-LWVRDFYK 115
           K  S LD LM      G++RT+ ++  L+  +GFS  +      N L V +FYK
Sbjct: 192 KLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 88.3 bits (218), Expect = 2e-23
 Identities = 56/113 (49%), Positives = 78/113 (69%)

Query: 1   MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST 60
             DMF ++PK DA+FMKWI H+WSD+HCLK LK  Y+++P++GKVIV E ILP  P++S 
Sbjct: 130 GGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSL 189

Query: 61  VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDF 113
            +K    +DV+M+  NP GK+RT+ EF  LA GAGF G +      N ++ +F
Sbjct: 190 ATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 84.4 bits (208), Expect = 8e-22
 Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 5/117 (4%)

Query: 1   MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIP---EDGKVIVVESILPELPE 57
             DMF ++P  DA+ +K+ILHNW+D  CL++LK   +++    + GKV +++ ++ +  +
Sbjct: 129 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 188

Query: 58  TSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
            + V++    +DV M   N  GK+R + E+  L   AGF   +    T  L + + Y
Sbjct: 189 ENQVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 243

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 49.2 bits (116), Expect = 8e-09
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 1   MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST 60
            D         D + + ++L NWSD+  L +L+   +++   G+++V++    E      
Sbjct: 138 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR 197

Query: 61  VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY 114
                  LD+ M+T    G+ RT+ E + LA  AG +              DF 
Sbjct: 198 FFST--LLDLRMLTFMG-GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFS 248

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 43.5 bits (101), Expect = 9e-07
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 1   MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETST 60
            D       K DAI + ++L NW D   +++L    +++   G++++ E         ++
Sbjct: 137 GDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH---ENS 193

Query: 61  VSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFE 102
            +++ ++LD+ M+     G  RT+ ++  LA  AG       
Sbjct: 194 FNEQFTELDLRMLV-FLGGALRTREKWDGLAASAGLVVEEVR 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.98
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.97
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.93
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.9
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.41
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.4
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.36
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.27
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.22
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.16
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.06
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.88
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.87
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.82
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.79
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.75
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.63
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.61
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.52
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.49
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.49
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.41
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.38
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.32
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.27
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.26
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.25
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.14
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.84
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.29
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.07
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.04
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.93
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.91
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.72
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.66
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.47
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.14
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	95.7
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.66
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.18
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	95.02
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	94.27
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.4
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.29
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.04
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	92.96
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	92.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	92.46
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	92.23
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	91.57
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	90.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	89.91
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	89.87
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	89.67
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	89.55
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	83.65

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.9e-33  Score=190.09  Aligned_cols=114  Identities=43%  Similarity=0.675  Sum_probs=102.1

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      +||||+++|.+|+|++++|||+|+|++|.+||++++++|+|||+++|.|.+.++.+..+...+....+|+.|++. .+|+
T Consensus       130 ~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~-~~g~  208 (244)
T d1fp1d2         130 GGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGR  208 (244)
T ss_dssp             ECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-HSCC
T ss_pred             cCCcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhh-CCCc
Confidence            489999999999999999999999999999999999999999999999999988765544444556788998876 4999


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEc-CCceEEEEEEC
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWF-TCNLWVRDFYK  115 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~lie~~~  115 (115)
                      +||.+||++||++|||+.+++.+. .+.++|||++|
T Consensus       209 ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         209 ERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             CEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             CCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence            999999999999999999998765 58899999998

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.98  E-value=1.7e-32  Score=186.27  Aligned_cols=113  Identities=32%  Similarity=0.605  Sum_probs=101.0

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCC---CEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPED---GKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg---g~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      +||||+++|.+|+|++++|||+|+|++|++||+++++||+||   |+++|+|.+.++.+..+........+|++|++  .
T Consensus       129 ~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~--~  206 (244)
T d1fp2a2         129 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC--L  206 (244)
T ss_dssp             ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG--G
T ss_pred             ecCcccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh--C
Confidence            489999999899999999999999999999999999999998   89999999998876554333344567888875  3


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                      +|++||.+||++||++|||+.++++++++..+|||++|
T Consensus       207 ~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~svIE~~p  244 (244)
T d1fp2a2         207 NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  244 (244)
T ss_dssp             TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEEEEEeC
Confidence            89999999999999999999999999999999999997

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.97  E-value=1.5e-30  Score=176.49  Aligned_cols=114  Identities=49%  Similarity=0.935  Sum_probs=101.2

Q ss_pred             CCCCCCCCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCce
Q 048196            1 MDDMFQNVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGK   80 (115)
Q Consensus         1 ~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   80 (115)
                      +||||+++|.+|+|++++++|+|+|+++.++|++++++|+|||+++|+|.+.++....+........+|+.||+++.+|+
T Consensus       130 ~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~  209 (243)
T d1kyza2         130 GGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGK  209 (243)
T ss_dssp             ECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             cccccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCC
Confidence            48999999999999999999999999999999999999999999999999988765543333334568999988767899


Q ss_pred             eCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEE
Q 048196           81 KRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFY  114 (115)
Q Consensus        81 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~  114 (115)
                      +||.+||++||++|||+.+++++..+..+|||.+
T Consensus       210 ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~~  243 (243)
T d1kyza2         210 ERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFL  243 (243)
T ss_dssp             CEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEEC
T ss_pred             cCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEeC
Confidence            9999999999999999999999998999999963

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.93  E-value=4.5e-27  Score=160.17  Aligned_cols=112  Identities=24%  Similarity=0.419  Sum_probs=92.6

Q ss_pred             CCCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            1 MDDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         1 ~gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      .||+++++|. +|+|+++++||+|+|+++.++|++++++|+|||+++|+|.+.++.....  ......+|+.|+..+ +|
T Consensus       137 ~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~-~g  213 (256)
T d1qzza2         137 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFM-GG  213 (256)
T ss_dssp             ECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SC
T ss_pred             eeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc--HHHHHHHHHHHHhhC-CC
Confidence            3899998886 5999999999999999999999999999999999999998766543321  123466899998864 89


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcCC-----ceEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFTC-----NLWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~~-----~~~lie~~~  115 (115)
                      ++||.+||++||++|||+.+++++.+.     .++|+|+.+
T Consensus       214 ~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~~  254 (256)
T d1qzza2         214 RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  254 (256)
T ss_dssp             CCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEEe
Confidence            999999999999999999999988752     569999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.90  E-value=1.6e-24  Score=146.92  Aligned_cols=111  Identities=22%  Similarity=0.387  Sum_probs=91.8

Q ss_pred             CCCCCCCCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            1 MDDMFQNVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         1 ~gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      .||+++++|. +|+|+++++||+|+|+++.++|++++++|+|||+++|.|....+....+   .....+|+.|+..+ +|
T Consensus       136 ~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g  211 (253)
T d1tw3a2         136 EGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN---EQFTELDLRMLVFL-GG  211 (253)
T ss_dssp             ECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SC
T ss_pred             cccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CC
Confidence            3899997775 6999999999999999999999999999999999999998766543322   12355788888764 89


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEcC-----CceEEEEEEC
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWFT-----CNLWVRDFYK  115 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~~-----~~~~lie~~~  115 (115)
                      ++||.+||+++|++|||++++++.++     ...++++..|
T Consensus       212 ~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         212 ALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence            99999999999999999999988763     2467777654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=2.5e-13  Score=89.47  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=76.2

Q ss_pred             CCCCC-CCCcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC---
Q 048196            2 DDMFQ-NVPKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP---   77 (115)
Q Consensus         2 gd~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~---   77 (115)
                      +|+.+ +.+..|++++.+++|++++++..++|++++++|+|||.+++.|...+..+.....   .......+.....   
T Consensus        99 ~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  175 (225)
T d1im8a_          99 NDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL---LIDLHHQFKRANGYSE  175 (225)
T ss_dssp             SCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH---HHHHHHHHHHHTTGGG
T ss_pred             chhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH---HHHHHHHHHHHcCCCH
Confidence            45555 4445699999999999998889999999999999999999999887765322100   0000000000000   


Q ss_pred             ------------CceeCCHHHHHHHHHhCCCCeeEEEEcCCceEEEEEEC
Q 048196           78 ------------SGKKRTKHEFLTLATGAGFSGTRFEWFTCNLWVRDFYK  115 (115)
Q Consensus        78 ------------~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~lie~~~  115 (115)
                                  .-...|.+++.++|++|||+.+++..-...+..+-|+|
T Consensus       176 ~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         176 LEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             STTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence                        01346889999999999999988765444555566655

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.40  E-value=5.3e-13  Score=89.82  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      +|+.+ +.+.  .|+|++.+++||++|++..++|++++++|+|||.++|.|.+.......         ++.     ..+
T Consensus       147 ~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~---------~d~-----~d~  212 (254)
T d1xtpa_         147 ASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL---------VDK-----EDS  212 (254)
T ss_dssp             SCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE---------EET-----TTT
T ss_pred             ccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce---------ecc-----cCC
Confidence            45544 3443  399999999999999999999999999999999999999876543211         111     124


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...||.++|+++|++|||++++....
T Consensus       213 ~~~rs~~~~~~l~~~aGf~ii~~~~q  238 (254)
T d1xtpa_         213 SLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             EEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             ceeCCHHHHHHHHHHcCCEEEEEEee
Confidence            56689999999999999999876553

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=86.28  Aligned_cols=88  Identities=19%  Similarity=0.254  Sum_probs=70.1

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ +.+.  .|+|++..++||+++++..++|+++++.|+|||.+++.|....+...          ++     ....
T Consensus       116 ~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~-----~~~~  180 (222)
T d2ex4a1         116 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD-----DVDS  180 (222)
T ss_dssp             CCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE-----TTTT
T ss_pred             ccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc-----cCCc
Confidence            56666 4443  39999999999999999999999999999999999999987654311          11     0124


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...|+.++|.++|+++||++++....
T Consensus       181 ~~~~~~~~~~~l~~~aGf~ii~~~~q  206 (222)
T d2ex4a1         181 SVCRDLDVVRRIICSAGLSLLAEERQ  206 (222)
T ss_dssp             EEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence            56689999999999999999887654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.27  E-value=6.4e-12  Score=82.39  Aligned_cols=95  Identities=14%  Similarity=0.221  Sum_probs=66.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ ++|.  .|+|++..++|+++|.  .++|+++++.|+|||+++|.+...++....   ......+.- .. ...+
T Consensus        70 ~d~~~l~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~-~~-~~~~  142 (231)
T d1vl5a_          70 GDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDAF---DVFYNYVEK-ER-DYSH  142 (231)
T ss_dssp             CCC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHHH---HHHHHHHHH-HH-CTTC
T ss_pred             cccccccccccccccccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCHHH---HHHHHHHHh-hc-ccCc
Confidence            56666 6664  3999999999999985  588999999999999999999877654211   111000100 01 1123


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      .+..+.++|.++|+++||+++++..
T Consensus       143 ~~~~~~~~~~~~l~~aGf~~~~~~~  167 (231)
T d1vl5a_         143 HRAWKKSDWLKMLEEAGFELEELHC  167 (231)
T ss_dssp             CCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            4567889999999999999877653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.6e-11  Score=79.44  Aligned_cols=93  Identities=15%  Similarity=0.132  Sum_probs=66.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhcccCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~~~~   77 (115)
                      ||+.+ +.+.  .|+|++..+||+++|.  .++|+++++.|+|||++++.+...+..     ..+. .....-...  ..
T Consensus        80 ~d~~~l~~~~~~fD~I~~~~~l~h~~d~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~--~~  150 (208)
T d1vlma_          80 GTAENLPLKDESFDFALMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNKEKSVF--YK  150 (208)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTTTC-CC--ST
T ss_pred             cccccccccccccccccccccccccccc--ccchhhhhhcCCCCceEEEEecCCcch-----hHHhhhhccccccc--cc
Confidence            56665 5553  3999999999999874  689999999999999999988644321     1000 011111111  23


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      +.+.+|.+++.++|+++||+.+++..
T Consensus       151 ~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         151 NARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             TCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEEE
Confidence            55668999999999999999888765

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.16  E-value=6.8e-11  Score=79.99  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||+.+ ++|.  .|+|++..++||++|.  .++|++++++|+|||++++.+....+.......   ....+...     .
T Consensus       124 ~d~~~l~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~-----~  193 (282)
T d2o57a1         124 GSFLEIPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRIK-----L  193 (282)
T ss_dssp             CCTTSCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHHT-----C
T ss_pred             cccccccccccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH---HHHHHHhc-----c
Confidence            67777 6664  3999999999999975  689999999999999999999887765332211   11111111     1


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ....|.++|.++++++||+.+++...
T Consensus       194 ~~~~s~~~~~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         194 HDMGSLGLYRSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             SSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEEEC
Confidence            12357899999999999998877654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=2.1e-10  Score=75.53  Aligned_cols=95  Identities=16%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             CCCCC-CCCcc--cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCC
Q 048196            2 DDMFQ-NVPKG--DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus         2 gd~~~-~~p~~--D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (115)
                      ||..+ ++|.+  |+|++..++|+++|.  .++|+++++.|+|||++++.+...++.+.   .......+  ........
T Consensus        71 ~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~  143 (234)
T d1xxla_          71 GTAESLPFPDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDPV---LDEFVNHL--NRLRDPSH  143 (234)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSHH---HHHHHHHH--HHHHCTTC
T ss_pred             cccccccccccccceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCHH---HHHHHHHH--HhhCCCcc
Confidence            56666 56643  999999999999884  79999999999999999999987654321   11111111  11111125


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEE
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEW  103 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~  103 (115)
                      .+..+..+|.++++++||....+..
T Consensus       144 ~~~~~~~~~~~~~~~~gf~~~~~~~  168 (234)
T d1xxla_         144 VRESSLSEWQAMFSANQLAYQDIQK  168 (234)
T ss_dssp             CCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHCCCceeEEEE
Confidence            6677899999999999998766543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.9e-09  Score=70.40  Aligned_cols=93  Identities=13%  Similarity=0.069  Sum_probs=67.8

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||+.+..+.  .|+|++..++|+++|.  .++|+++++.|+|||++++.+......+.....   ......     ....
T Consensus        90 ~d~~~~~~~~~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~---~~~~~~-----~~~~  159 (245)
T d1nkva_          90 NDAAGYVANEKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI---AQACGV-----SSTS  159 (245)
T ss_dssp             SCCTTCCCSSCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH---HHTTTC-----SCGG
T ss_pred             hHHhhccccCceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHHH---HHHhcc-----CCCc
Confidence            566664443  4999999999999985  689999999999999999999877665433211   111111     1123


Q ss_pred             eeCCHHHHHHHHHhCCCCeeEEEEc
Q 048196           80 KKRTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      ...+..+|.++++++||+.+.....
T Consensus       160 ~~~~~~~~~~~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         160 DFLTLPGLVGAFDDLGYDVVEMVLA  184 (245)
T ss_dssp             GSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred             ccCCHHHHHHHHHHcCCEEEEEEeC
Confidence            4568899999999999998876543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.9e-09  Score=70.41  Aligned_cols=80  Identities=13%  Similarity=-0.036  Sum_probs=58.9

Q ss_pred             ccEEEeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSD--DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|++++..++|+.+.  ++...+++++.+.|+|||.+++.+......-     ..    .+..     ......|.++|+
T Consensus       153 fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~-----~~----~~~~-----~~~~~~~~~~~~  218 (257)
T d2a14a1         153 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-----MV----GKRE-----FSCVALEKGEVE  218 (257)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-----EE----TTEE-----EECCCCCHHHHH
T ss_pred             ccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc-----ee----cccc-----ccccCCCHHHHH
Confidence            499999999999863  5678999999999999999999886533210     00    0000     012235899999


Q ss_pred             HHHHhCCCCeeEEEEc
Q 048196           89 TLATGAGFSGTRFEWF  104 (115)
Q Consensus        89 ~ll~~aGf~~~~~~~~  104 (115)
                      ++|++|||+++++...
T Consensus       219 ~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         219 QAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEEe
Confidence            9999999998887544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.6e-09  Score=70.95  Aligned_cols=78  Identities=10%  Similarity=0.111  Sum_probs=57.6

Q ss_pred             ccEEEeccccccCCh--HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHH
Q 048196           11 GDAIFMKWILHNWSD--DHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFL   88 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~   88 (115)
                      .|+|++.+++|+.+.  ++-.++|+++++.|||||.+++.+........          ......    .....|.++++
T Consensus       158 fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~----------~~~~~~----~~~~~t~e~v~  223 (263)
T d2g72a1         158 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----------AGEARL----TVVPVSEEEVR  223 (263)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE----------ETTEEE----ECCCCCHHHHH
T ss_pred             cCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc----------cCCccc----ccCCCCHHHHH
Confidence            499999999999863  45789999999999999999998875432100          000000    11236899999


Q ss_pred             HHHHhCCCCeeEEE
Q 048196           89 TLATGAGFSGTRFE  102 (115)
Q Consensus        89 ~ll~~aGf~~~~~~  102 (115)
                      ++|+++||+++++.
T Consensus       224 ~~l~~aGf~v~~~~  237 (263)
T d2g72a1         224 EALVRSGYKVRDLR  237 (263)
T ss_dssp             HHHHHTTEEEEEEE
T ss_pred             HHHHHCCCeEEEEE
Confidence            99999999987654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=1.2e-08  Score=69.15  Aligned_cols=94  Identities=15%  Similarity=0.201  Sum_probs=68.5

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCC----ch-hhhhchhccchhcccCCCceeCCHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPET----ST-VSKRNSQLDVLMMTQNPSGKKRTKH   85 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~g~~rt~~   85 (115)
                      .|.|++..+++|++++....+++++++.|+|||+++|.+.+..+....    .. ........+...--.+++|...|.+
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~  197 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE  197 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchH
Confidence            499999999999999888999999999999999999988765543110    00 0000011122111124788899999


Q ss_pred             HHHHHHHhCCCCeeEEEEc
Q 048196           86 EFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        86 e~~~ll~~aGf~~~~~~~~  104 (115)
                      ++.+.++++||++..+...
T Consensus       198 ~l~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         198 MMVEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             HHHHHHHHTTCBCCCCEEC
T ss_pred             hhhhhHHhhccccceeeec
Confidence            9999999999999877654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.75  E-value=3.6e-09  Score=71.55  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=40.9

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      +|+.+ +++. .|+|++.+++|+++|.  .++|++++++|+|||++++.|..
T Consensus        84 ~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          84 GDATEIELNDKYDIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             SCTTTCCCSSCEEEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cccccccccCCceEEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECC
Confidence            56666 4554 4999999999999986  58999999999999999999853

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=1.6e-07  Score=63.66  Aligned_cols=97  Identities=13%  Similarity=0.144  Sum_probs=68.7

Q ss_pred             CCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCC-----CCchhhhhchhccchhcccCCCcee
Q 048196            8 VPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELP-----ETSTVSKRNSQLDVLMMTQNPSGKK   81 (115)
Q Consensus         8 ~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~g~~   81 (115)
                      +|. .|.++.-.++.|+.......+++++++.|+|||++++.+.....+.     ..+.........+...--.+++|..
T Consensus       124 ~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l  203 (285)
T d1kpga_         124 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  203 (285)
T ss_dssp             CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence            343 5999999999999887778999999999999999999998754321     0010000011111111112478888


Q ss_pred             CCHHHHHHHHHhCCCCeeEEEEc
Q 048196           82 RTKHEFLTLATGAGFSGTRFEWF  104 (115)
Q Consensus        82 rt~~e~~~ll~~aGf~~~~~~~~  104 (115)
                      .|..++.++++++||++..+..+
T Consensus       204 Psl~~~~~~~e~agf~v~~~~~~  226 (285)
T d1kpga_         204 PSIPMVQECASANGFTVTRVQSL  226 (285)
T ss_dssp             CCHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CChhhHHHHHHHhchhhcccccc
Confidence            99999999999999999887665

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.61  E-value=5.7e-08  Score=63.32  Aligned_cols=98  Identities=17%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHH-hhCCCCCEEEEEeeecCCCCCC-chhhh---hchhccchhcc
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYY-KSIPEDGKVIVVESILPELPET-STVSK---RNSQLDVLMMT   74 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~-~aL~pgg~lii~d~~~~~~~~~-~~~~~---~~~~~~l~~~~   74 (115)
                      ||+.+ +.+. .|+|++..+|||++|+  .++|++++ +.|+|||.++|.-+........ .....   ....++-.-. 
T Consensus        71 ~~~~~~~~~~~fD~I~~~~vleh~~d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~-  147 (225)
T d2p7ia1          71 SRFEDAQLPRRYDNIVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEF-  147 (225)
T ss_dssp             SCGGGCCCSSCEEEEEEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHH-
T ss_pred             ccccccccccccccccccceeEecCCH--HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCcccc-
Confidence            44444 3343 4999999999999886  68899998 6799999999964432210000 00000   0000000000 


Q ss_pred             cCCCceeCCHHHHHHHHHhCCCCeeEEE
Q 048196           75 QNPSGKKRTKHEFLTLATGAGFSGTRFE  102 (115)
Q Consensus        75 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~  102 (115)
                      ...+-+.+|.++++++++++||++++..
T Consensus       148 ~~~h~~~~~~~~l~~~l~~~Gf~i~~~~  175 (225)
T d2p7ia1         148 AHGHRCTYALDTLERDASRAGLQVTYRS  175 (225)
T ss_dssp             HTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             ceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence            0124456789999999999999987754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=5.9e-08  Score=62.47  Aligned_cols=50  Identities=12%  Similarity=0.064  Sum_probs=42.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      +|..+ +++.  .|+|++..++|++++++..++|+++.+.|+|||+++|....
T Consensus        91 ~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1          91 GDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            45556 5553  39999999999999888899999999999999999987764

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=4.8e-08  Score=64.13  Aligned_cols=48  Identities=17%  Similarity=0.186  Sum_probs=39.4

Q ss_pred             CCCCC-CCCc-ccEEEec-cccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQ-NVPK-GDAIFMK-WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||+.+ +++. .|+|++. .++|+++.++..++|+++++.|+|||++++..
T Consensus        95 ~d~~~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1          95 GDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             SCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            56666 5554 4998876 68888888889999999999999999998743

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.49  E-value=1.4e-07  Score=60.27  Aligned_cols=52  Identities=12%  Similarity=0.078  Sum_probs=43.2

Q ss_pred             CCCCC-CCCc-ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196            2 DDMFQ-NVPK-GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      +|+.+ +.+. .|+|++..++|++++++..++|++++++|+|||++++......
T Consensus        85 ~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  138 (198)
T d2i6ga1          85 VDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDT  138 (198)
T ss_dssp             CCTTTCCCCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-
T ss_pred             eecccccccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            46666 3333 4999999999999999999999999999999999999876543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=6.4e-07  Score=60.79  Aligned_cols=95  Identities=16%  Similarity=0.304  Sum_probs=67.5

Q ss_pred             ccEEEeccccccCCh-------HHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCch-----hhhhchhccchhcccCCC
Q 048196           11 GDAIFMKWILHNWSD-------DHCLKLLKIYYKSIPEDGKVIVVESILPELPETST-----VSKRNSQLDVLMMTQNPS   78 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~   78 (115)
                      .|.|+...++.|+++       +.-..+++++++.|+|||++++.....++......     ........+...--.+++
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpg  206 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG  206 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCC
Confidence            499999999988887       34579999999999999999999988765321100     000001111111112478


Q ss_pred             ceeCCHHHHHHHHHhCCCCeeEEEEcC
Q 048196           79 GKKRTKHEFLTLATGAGFSGTRFEWFT  105 (115)
Q Consensus        79 g~~rt~~e~~~ll~~aGf~~~~~~~~~  105 (115)
                      |...|..++...++++||++..+...+
T Consensus       207 g~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         207 GRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCHHHHHhhhcccccccceeeecc
Confidence            899999999999999999998876653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.38  E-value=3.1e-07  Score=60.27  Aligned_cols=46  Identities=22%  Similarity=0.172  Sum_probs=35.9

Q ss_pred             CCCCC-CCCc-ccEEEec-cccccC-ChHHHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK-GDAIFMK-WILHNW-SDDHCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~-~D~v~~~-~vlh~~-~d~~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||+.+ +++. .|+|++. ++++++ +.++..++|+++++.|+|||.+++
T Consensus        91 ~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_          91 QDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cchhhhcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            56766 4454 4988864 677776 466788999999999999999876

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.3e-07  Score=60.69  Aligned_cols=81  Identities=15%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhh-chhccchhcccCCCceeCCHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKR-NSQLDVLMMTQNPSGKKRTKHEFLT   89 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~g~~rt~~e~~~   89 (115)
                      .|+|++.+++|+++|.  .+.|+++++.|+|||.++|.....+    .. ..+. .....  ...........+.++|.+
T Consensus       124 fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~----~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~  194 (280)
T d1jqea_         124 WDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS----SG-WDKLWKKYGS--RFPQDDLCQYITSDDLTQ  194 (280)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT----SH-HHHHHHHHGG--GSCCCTTSCCCCHHHHHH
T ss_pred             eeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCc----ch-HHHHHHHHHH--hcCCCcccccCCHHHHHH
Confidence            3999999999999885  6899999999999999998754221    11 1111 01111  111112345678899999


Q ss_pred             HHHhCCCCeeE
Q 048196           90 LATGAGFSGTR  100 (115)
Q Consensus        90 ll~~aGf~~~~  100 (115)
                      +|+++||....
T Consensus       195 ~L~~~G~~~~~  205 (280)
T d1jqea_         195 MLDNLGLKYEC  205 (280)
T ss_dssp             HHHHHTCCEEE
T ss_pred             HHHHCCCceEE
Confidence            99999998644

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=9.8e-07  Score=57.44  Aligned_cols=81  Identities=7%  Similarity=-0.089  Sum_probs=59.0

Q ss_pred             CCCCC-C-CCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCC
Q 048196            2 DDMFQ-N-VPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNP   77 (115)
Q Consensus         2 gd~~~-~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (115)
                      ||+++ + .+.  .|+++.+.++|+++.++..+.++++.++|+|||++++.....++.....+                 
T Consensus       117 ~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gp-----------------  179 (229)
T d2bzga1         117 CSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGP-----------------  179 (229)
T ss_dssp             SCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCS-----------------
T ss_pred             cchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCC-----------------
Confidence            56666 2 222  39999999999999999999999999999999999887776554321100                 


Q ss_pred             CceeCCHHHHHHHHHhCCCCeeEE
Q 048196           78 SGKKRTKHEFLTLATGAGFSGTRF  101 (115)
Q Consensus        78 ~g~~rt~~e~~~ll~~aGf~~~~~  101 (115)
                       -...|.+|+.++|.. +|.+..+
T Consensus       180 -p~~~~~~el~~lf~~-~~~i~~l  201 (229)
T d2bzga1         180 -PFYVPHAEIERLFGK-ICNIRCL  201 (229)
T ss_dssp             -SCCCCHHHHHHHHTT-TEEEEEE
T ss_pred             -CCCCCHHHHHHHhcC-CCEEEEE
Confidence             011367899999964 6666444

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.27  E-value=1.4e-06  Score=54.58  Aligned_cols=44  Identities=7%  Similarity=0.065  Sum_probs=39.3

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      .|+++.+.++|+++++.....++++++.|+|||++++.......
T Consensus       100 ~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_         100 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             eeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            39999999999999999999999999999999999887765443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.26  E-value=2e-06  Score=56.42  Aligned_cols=80  Identities=9%  Similarity=-0.153  Sum_probs=58.4

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA   91 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll   91 (115)
                      |+.++.+.+|++++  ...+++++++.|+|||+++|.+.....+...+.                    ..+.+++.+.|
T Consensus       143 ~v~~i~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~--------------------~~~~~e~~~~L  200 (230)
T d1g8sa_         143 KVDVIYEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP--------------------KEIFKEQKEIL  200 (230)
T ss_dssp             CEEEEEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH--------------------HHHHHHHHHHH
T ss_pred             eeEEeeccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCCCCCH--------------------HHHHHHHHHHH
Confidence            77777788887765  578899999999999999998865544332211                    11236889999


Q ss_pred             HhCCCCeeEEEEcCC---ceEEEEE
Q 048196           92 TGAGFSGTRFEWFTC---NLWVRDF  113 (115)
Q Consensus        92 ~~aGf~~~~~~~~~~---~~~lie~  113 (115)
                      +++||++++...+.+   .+.++.+
T Consensus       201 ~~aGF~ive~idL~py~~~H~~vvg  225 (230)
T d1g8sa_         201 EAGGFKIVDEVDIEPFEKDHVMFVG  225 (230)
T ss_dssp             HHHTEEEEEEEECTTTSTTEEEEEE
T ss_pred             HHcCCEEEEEecCCCCcCCeEEEEE
Confidence            999999999888753   3555543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.25  E-value=2.5e-07  Score=59.21  Aligned_cols=37  Identities=19%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      |+|++++||++++++...+++++++++|+|||.|++-
T Consensus       134 DvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         134 DAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            9999999999999999999999999999999999884

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.14  E-value=5.6e-06  Score=54.41  Aligned_cols=47  Identities=13%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             CCCCC-CC-Cc--ccEEEeccccccC--ChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQ-NV-PK--GDAIFMKWILHNW--SDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~-~~-p~--~D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      +|.+. +. +.  .|+|++..++|++  +.++..++|+++.+.|+|||++++.
T Consensus        81 ~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          81 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            56665 43 23  4999999999987  3466789999999999999999875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=5.4e-06  Score=53.58  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=37.4

Q ss_pred             CCCCC-CCCc--ccEEEe-ccccccCChHHHHHHHHHHHhhCCCCCEEEEEee
Q 048196            2 DDMFQ-NVPK--GDAIFM-KWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVES   50 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~-~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~   50 (115)
                      ||+.+ +++.  .|+|++ ..++|+++|.  .++|+++++.|+|||.+++...
T Consensus        91 ~~~~~l~~~~~~fD~ii~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          91 AKAEDLPFPSGAFEAVLALGDVLSYVENK--DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             CCTTSCCSCTTCEEEEEECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccceeeecchhhhhhhH--HHHHHHHHhhcCcCcEEEEEEC
Confidence            45555 5654  399986 5799999986  5799999999999999988653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.29  E-value=0.0001  Score=46.47  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=36.8

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      +|++++++.  .|+|++..++|.. .+...++++++.+.|+|||++++.
T Consensus       109 ~d~~~~~~~~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         109 SDLYENVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             CSTTTTCTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhccCCceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEE
Confidence            678876653  4999998887755 445678999999999999999874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.07  E-value=0.0012  Score=42.62  Aligned_cols=79  Identities=10%  Similarity=-0.092  Sum_probs=50.1

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHH
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLA   91 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll   91 (115)
                      |+++.  .+++.+  +...+++++++.|+|||+++|.......+...++                    +....+..+++
T Consensus       145 D~i~~--d~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~~v~~~v~~l~  200 (227)
T d1g8aa_         145 DVIFE--DVAQPT--QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------EQVFREVEREL  200 (227)
T ss_dssp             EEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------HHHHHHHHHHH
T ss_pred             EEEEE--Eccccc--hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------HHHHHHHHHHH
Confidence            65553  344443  4578899999999999999987543222211110                    01123455555


Q ss_pred             HhCCCCeeEEEEcCC---ceEEEEEEC
Q 048196           92 TGAGFSGTRFEWFTC---NLWVRDFYK  115 (115)
Q Consensus        92 ~~aGf~~~~~~~~~~---~~~lie~~~  115 (115)
                       ++||+..+...+.+   .+.++-++|
T Consensus       201 -~~gf~iie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         201 -SEYFEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             -HTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred             -HcCCEEEEEEcCCCCCCceEEEEEEe
Confidence             46999999888754   478888876

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.00058  Score=44.98  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=45.0

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHH
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTL   90 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~l   90 (115)
                      .|+|+.....     +...++++.++++|+|||++++.+...+                             ..+++.+.
T Consensus       185 fD~V~ani~~-----~~l~~l~~~~~~~LkpGG~lilSgil~~-----------------------------~~~~v~~~  230 (254)
T d2nxca1         185 FDLLVANLYA-----ELHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREA  230 (254)
T ss_dssp             EEEEEEECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHH
T ss_pred             cchhhhcccc-----ccHHHHHHHHHHhcCCCcEEEEEecchh-----------------------------hHHHHHHH
Confidence            4998865333     3457788999999999999998653211                             13678888


Q ss_pred             HHhCCCCeeEEEEcC
Q 048196           91 ATGAGFSGTRFEWFT  105 (115)
Q Consensus        91 l~~aGf~~~~~~~~~  105 (115)
                      ++++||+..+.....
T Consensus       231 ~~~~Gf~~~~~~~~~  245 (254)
T d2nxca1         231 MAGAGFRPLEEAAEG  245 (254)
T ss_dssp             HHHTTCEEEEEEEET
T ss_pred             HHHCCCEEEEEEEEC
Confidence            999999988876654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0003  Score=47.91  Aligned_cols=50  Identities=16%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             CCCCC-CCC----cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCC
Q 048196            2 DDMFQ-NVP----KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPE   54 (115)
Q Consensus         2 gd~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~   54 (115)
                      |||.+ +..    .+|+|++.+.+| ++  +..+.|+++.+.|||||++++.+...+.
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~~  271 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKEGGRIVSSKPFAPL  271 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             CcccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCCCcEEEEecccCCC
Confidence            67777 433    368888876654 33  3578899999999999999998866553

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=1.8e-05  Score=51.39  Aligned_cols=74  Identities=9%  Similarity=-0.010  Sum_probs=45.2

Q ss_pred             cEEE-----eccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHH
Q 048196           12 DAIF-----MKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHE   86 (115)
Q Consensus        12 D~v~-----~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e   86 (115)
                      |.++     ....++++.+  ..+.++++++.|+|||++++.+.......       ....+        .+......+.
T Consensus       123 D~i~fD~~~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~  185 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKY--------SDITIMFEET  185 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTC--------SCHHHHHHHH
T ss_pred             cceeecccccccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcchh-------hhhhh--------hhcchhhhhH
Confidence            6655     5677777766  46899999999999999987432211100       00000        1222223456


Q ss_pred             HHHHHHhCCCCeeEEE
Q 048196           87 FLTLATGAGFSGTRFE  102 (115)
Q Consensus        87 ~~~ll~~aGf~~~~~~  102 (115)
                      +...+.++||+..++.
T Consensus       186 ~~~~l~~agF~~~~i~  201 (229)
T d1zx0a1         186 QVPALLEAGFRRENIR  201 (229)
T ss_dssp             THHHHHHTTCCGGGEE
T ss_pred             HHHHHHHCCCeeEEEE
Confidence            6778888999876553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.72  E-value=0.00037  Score=46.29  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=30.6

Q ss_pred             ccEEEe-ccccccCCh-----HHHHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFM-KWILHNWSD-----DHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~-~~vlh~~~d-----~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|+|++ .++++|+++     ++..++|+++++.|+|||.+++-
T Consensus       130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            377775 468888865     46789999999999999998773

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00071  Score=44.55  Aligned_cols=41  Identities=15%  Similarity=0.091  Sum_probs=32.5

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      ||..+ +++.  .|+|+..+++|+         ++++++.|||||.+++..+.
T Consensus       136 ~d~~~l~~~~~sfD~v~~~~~~~~---------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         136 ASSHRLPFSDTSMDAIIRIYAPCK---------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             CCTTSCSBCTTCEEEEEEESCCCC---------HHHHHHHEEEEEEEEEEEEC
T ss_pred             eehhhccCCCCCEEEEeecCCHHH---------HHHHHHHhCCCcEEEEEeeC
Confidence            56666 6664  399999888876         45678899999999998764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.0019  Score=45.19  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=33.3

Q ss_pred             CcccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196            9 PKGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus         9 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      +.+|++++.+.+| .  ++..+.|+++.+.|||||+|++.+...+..
T Consensus       296 ~~adVV~inn~~f-~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~  339 (406)
T d1u2za_         296 PQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT  339 (406)
T ss_dssp             GGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             ccceEEEEecccC-c--hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence            3468888766443 3  346789999999999999999988765543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.14  E-value=0.0064  Score=38.55  Aligned_cols=73  Identities=8%  Similarity=-0.081  Sum_probs=43.8

Q ss_pred             cccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCC
Q 048196           18 WILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFS   97 (115)
Q Consensus        18 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~   97 (115)
                      +.++++.+  ...+++++++.|+|||+++|.+.....+...++.    .                ..++..+.+ ++||+
T Consensus       131 ~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~----~----------------~~~~~~~~l-~~gf~  187 (209)
T d1nt2a_         131 QDIAQKNQ--IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE----E----------------VFKSVLKEM-EGDFK  187 (209)
T ss_dssp             ECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHH----H----------------HHHHHHHHH-HTTSE
T ss_pred             ecccChhh--HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHH----H----------------HHHHHHHHH-HcCCE
Confidence            34555544  4688999999999999999987543222211110    0                011222333 37999


Q ss_pred             eeEEEEcCC---ceEEEEE
Q 048196           98 GTRFEWFTC---NLWVRDF  113 (115)
Q Consensus        98 ~~~~~~~~~---~~~lie~  113 (115)
                      ..+...+.+   .+.+|-+
T Consensus       188 i~E~i~L~P~~~~H~~v~~  206 (209)
T d1nt2a_         188 IVKHGSLMPYHRDHIFIHA  206 (209)
T ss_dssp             EEEEEECTTTCTTEEEEEE
T ss_pred             EEEEEccCCCccCcEEEEE
Confidence            999887754   4555544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.70  E-value=0.0014  Score=43.40  Aligned_cols=45  Identities=13%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecC
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILP   53 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~   53 (115)
                      ||+.+ ++|.  .|+|++     |.+++  ...+.+++++|+|||++++..+..+
T Consensus       157 ~d~~~~~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~  204 (264)
T d1i9ga_         157 SDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATVT  204 (264)
T ss_dssp             SCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             cccccccccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCccC
Confidence            56666 5664  398875     56765  5889999999999999998765444

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.0023  Score=40.70  Aligned_cols=39  Identities=28%  Similarity=0.484  Sum_probs=29.2

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||..+..+ .  .|+|++..++++.+++        +.+.|+|||+|++.
T Consensus       133 ~d~~~~~~~~~~fD~I~~~~~~~~~p~~--------l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         133 GDGYYGVPEFSPYDVIFVTVGVDEVPET--------WFTQLKEGGRVIVP  174 (213)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSCCCHH--------HHHHEEEEEEEEEE
T ss_pred             CchHHccccccchhhhhhhccHHHhHHH--------HHHhcCCCcEEEEE
Confidence            45555333 2  3999999999999863        45679999999883

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0038  Score=40.08  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=29.8

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||.+...+ .  .|+|++..++++.+++        +.+.|+|||+|++.
T Consensus       139 gD~~~~~~~~~~fD~I~~~~~~~~ip~~--------l~~~LkpGG~LV~p  180 (224)
T d1i1na_         139 GDGRMGYAEEAPYDAIHVGAAAPVVPQA--------LIDQLKPGGRLILP  180 (224)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             eecccccchhhhhhhhhhhcchhhcCHH--------HHhhcCCCcEEEEE
Confidence            56555444 3  3999999999998863        45789999999983

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.02  E-value=0.0045  Score=40.48  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=30.7

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ||+.+.++.  .|+|++     +.++.  .++|.++.++|+|||++++.-
T Consensus       144 ~Di~~~~~~~~fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         144 SDIADFISDQMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             SCTTTCCCSCCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecccccceeeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEe
Confidence            566665554  498875     45554  478999999999999998853

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.27  E-value=0.024  Score=35.70  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             ccEEEeccccccCChHH------HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDH------CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~------~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|.+++.+....+....      ...+|+.+++.|+|||.|+|.
T Consensus       100 ~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         100 VKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             hhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            38888777766554432      247999999999999999885

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.40  E-value=0.67  Score=31.43  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             CCCCCC-CCCcc--cEEEeccccccCCh-------------------H------------HHHHHHHHHHhhCCCCCEEE
Q 048196            1 MDDMFQ-NVPKG--DAIFMKWILHNWSD-------------------D------------HCLKLLKIYYKSIPEDGKVI   46 (115)
Q Consensus         1 ~gd~~~-~~p~~--D~v~~~~vlh~~~d-------------------~------------~~~~iL~~~~~aL~pgg~li   46 (115)
                      +|.|++ =+|..  ++++.++.||-++.                   +            +-..+|+.=.+-|.|||+++
T Consensus       127 pGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mv  206 (359)
T d1m6ex_         127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV  206 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred             CCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            488999 46853  99999999996542                   1            22346655556699999999


Q ss_pred             EEeeecCCCCCCchhhhhchhccc-----hhccc------------CCCceeCCHHHHHHHHHhCC-CCeeEEE
Q 048196           47 VVESILPELPETSTVSKRNSQLDV-----LMMTQ------------NPSGKKRTKHEFLTLATGAG-FSGTRFE  102 (115)
Q Consensus        47 i~d~~~~~~~~~~~~~~~~~~~~l-----~~~~~------------~~~g~~rt~~e~~~ll~~aG-f~~~~~~  102 (115)
                      +.=...++......  .....+++     .-|+.            +.---.+|.+|+++.+++.| |.+.++.
T Consensus       207 l~~~gr~~~~~~~~--~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e  278 (359)
T d1m6ex_         207 LTILGRRSEDRAST--ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EEEEECSSSSSSST--TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             EEEeccCCCCCCCC--ccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence            98776554321110  00011111     01110            00113579999999999866 7766543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.023  Score=38.07  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEE
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDH-CLKLLKIYYKSIPEDGKVI   46 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~li   46 (115)
                      ||+.+ ++|.  .|+++...+.|....+. ...++..+.+.|+|||+++
T Consensus        94 ~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          94 GKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            56666 6663  59999887777666533 5678888889999999885

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.04  E-value=0.026  Score=37.62  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=35.0

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChH-HHHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDD-HCLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||..+ +.|.  .|+++...+.|....+ ....++..+.+.|+|||+++-
T Consensus        89 ~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          89 GKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             SCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            56666 5553  5999888777766554 367899999999999999873

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=92.96  E-value=0.0075  Score=39.68  Aligned_cols=29  Identities=10%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             ccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           19 ILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        19 vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ++++.++.  .++|+++.++|||||++++.-
T Consensus       176 V~~d~p~p--~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         176 LFLDVPDP--WNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             EEECCSCG--GGTHHHHHHHEEEEEEEEEEE
T ss_pred             eEecCCCH--HHHHHHHHhhcCCCCEEEEEe
Confidence            34678875  578999999999999999854

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.33  Score=31.68  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=53.5

Q ss_pred             CCCCCCCCCc--ccEEEecc--c-----------cccCC-------h---HHHHHHHHHHHhhCCCCCEEEEEeeecCCC
Q 048196            1 MDDMFQNVPK--GDAIFMKW--I-----------LHNWS-------D---DHCLKLLKIYYKSIPEDGKVIVVESILPEL   55 (115)
Q Consensus         1 ~gd~~~~~p~--~D~v~~~~--v-----------lh~~~-------d---~~~~~iL~~~~~aL~pgg~lii~d~~~~~~   55 (115)
                      .||+|++++.  .|+|+..-  +           +.+-|       +   +...++++++.+.|+|||.+++ |.  .. 
T Consensus       164 ~~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Ei--g~-  239 (274)
T d2b3ta1         164 QSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EH--GW-  239 (274)
T ss_dssp             CCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-EC--CS-
T ss_pred             ecccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EE--Cc-
Confidence            3789987774  49998752  1           11111       0   2356788888889999998877 21  10 


Q ss_pred             CCCchhhhhchhccchhcccCCCceeCCHHHHHHHHHhCCCCeeEEEE-cCCceEEEEEE
Q 048196           56 PETSTVSKRNSQLDVLMMTQNPSGKKRTKHEFLTLATGAGFSGTRFEW-FTCNLWVRDFY  114 (115)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~lie~~  114 (115)
                                                ...++..+++++.||..+++.. ..+.-.++.++
T Consensus       240 --------------------------~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         240 --------------------------QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             --------------------------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             --------------------------hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence                                      0125778899999998776544 45666666553

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.46  E-value=0.028  Score=35.93  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=29.1

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||.+...|+   .|+|++...+++.++.        +.+.|+|||+|++.
T Consensus       123 ~d~~~g~~~~~pfD~Iiv~~a~~~ip~~--------l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         123 GDGTLGYEEEKPYDRVVVWATAPTLLCK--------PYEQLKEGGIMILP  164 (224)
T ss_dssp             SCGGGCCGGGCCEEEEEESSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             CchhhcchhhhhHHHHHhhcchhhhhHH--------HHHhcCCCCEEEEE
Confidence            565554553   3999999999888763        34679999999883

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.23  E-value=0.039  Score=33.77  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             cccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEe
Q 048196           10 KGDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVE   49 (115)
Q Consensus        10 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d   49 (115)
                      ..|++++....+++     .++++.+.+.|+|||++++..
T Consensus       100 ~~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEe
Confidence            45999987766543     578999999999999998754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.023  Score=38.35  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeec
Q 048196           11 GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESIL   52 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~   52 (115)
                      .|.|++     |++++  ..+|.++.++|+|||++++.-+..
T Consensus       181 fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         181 FDAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EEEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             cceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeCCH
Confidence            388765     55554  368999999999999999865544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.45  E-value=0.06  Score=34.23  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=29.3

Q ss_pred             CCCCCCCC-c--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVP-K--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||..+..| .  .|+|++...+.+.|+.        +.+.|+|||++++.
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLASGGRLIVP  189 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             cccccccccccceeeEEEEeechhchHH--------HHHhcCCCcEEEEE
Confidence            55555444 2  3999999999988862        45689999999883

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.91  E-value=0.072  Score=33.71  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=29.5

Q ss_pred             CCCCCCCCc---ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEE
Q 048196            2 DDMFQNVPK---GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus         2 gd~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~   48 (115)
                      ||.+..+|.   .|+|++...+...|+.        +.+.|+|||++++.
T Consensus       134 gd~~~g~~~~~pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         134 GDGSKGFPPKAPYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP  175 (215)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             CccccCCcccCcceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence            566665552   3999999999888863        34579999999873

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.13  Score=33.86  Aligned_cols=46  Identities=17%  Similarity=0.187  Sum_probs=33.6

Q ss_pred             CCCCC-CCCc--ccEEEeccccccCChHH-HHHHHHHHHhhCCCCCEEEE
Q 048196            2 DDMFQ-NVPK--GDAIFMKWILHNWSDDH-CLKLLKIYYKSIPEDGKVIV   47 (115)
Q Consensus         2 gd~~~-~~p~--~D~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lii   47 (115)
                      ||..+ +.|.  .|+|+...+.|....+. ...++....+.|+|||+++-
T Consensus        91 ~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          91 GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             SCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            56666 5553  59999988888777654 45666667788999999874

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=89.67  E-value=0.34  Score=31.95  Aligned_cols=39  Identities=13%  Similarity=-0.009  Sum_probs=32.4

Q ss_pred             cEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeee
Q 048196           12 DAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESI   51 (115)
Q Consensus        12 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~   51 (115)
                      =+++.--++.+++.++..++|+.+.+..+||+.|++ |..
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~-d~~  206 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETS  206 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE-Eec
Confidence            355566789999999999999999999999998765 543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.55  E-value=0.32  Score=30.24  Aligned_cols=37  Identities=16%  Similarity=0.534  Sum_probs=25.6

Q ss_pred             ccEEEeccccccCChHH-------HHHHHHHHHhhCCCCCEEEEE
Q 048196           11 GDAIFMKWILHNWSDDH-------CLKLLKIYYKSIPEDGKVIVV   48 (115)
Q Consensus        11 ~D~v~~~~vlh~~~d~~-------~~~iL~~~~~aL~pgg~lii~   48 (115)
                      .|.+++.+. .-|+...       ...+|+.+++.|+|||.+++.
T Consensus       102 ~~~i~i~fP-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         102 IDRLYLNFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             CSEEEEESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             eehhccccc-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            377765443 2344321       258899999999999999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.65  E-value=1.9  Score=27.56  Aligned_cols=69  Identities=10%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             CCCCCCCCc--ccEEEeccccccCChHHHHHHHHHHHhhCCCCCEEEEEeeecCCCCCCchhhhhchhccchhcccCCCc
Q 048196            2 DDMFQNVPK--GDAIFMKWILHNWSDDHCLKLLKIYYKSIPEDGKVIVVESILPELPETSTVSKRNSQLDVLMMTQNPSG   79 (115)
Q Consensus         2 gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lii~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   79 (115)
                      ||.++-.+.  +|.|+|...-      .+...|..+.+.|+|||.|.+.+.+..+...                      
T Consensus       164 ~D~~~~~~~~~~D~Ii~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~----------------------  215 (260)
T d2frna1         164 MDNRDFPGENIADRILMGYVV------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMP----------------------  215 (260)
T ss_dssp             SCTTTCCCCSCEEEEEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT----------------------
T ss_pred             cchHHhccCCCCCEEEECCCC------chHHHHHHHHhhcCCCCEEEEEeccccccch----------------------
Confidence            677763333  5988764321      1346777788889999999887765433210                      


Q ss_pred             eeCCHHHHHHHHHhCCCCee
Q 048196           80 KKRTKHEFLTLATGAGFSGT   99 (115)
Q Consensus        80 ~~rt~~e~~~ll~~aGf~~~   99 (115)
                       ....+.+.++.++.||++.
T Consensus       216 -~~~~e~~~~~~~~~g~~v~  234 (260)
T d2frna1         216 -REPFETFKRITKEYGYDVE  234 (260)
T ss_dssp             -TTTHHHHHHHHHHTTCEEE
T ss_pred             -hhHHHHHHHHHHHcCCceE
Confidence             1224567778888898764