Citrus Sinensis ID: 048208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEccccccccccHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccEccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matsssspkshfharsnslpsrphplasQIDECLSRLratettsssicnniiGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRrrrgyeprvsneVGAYLRSRKKANKAIHKSLRvlktspcsssenETIAMIIILREVEGVTYTVFESLLSYLsgtkgqsyQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLignksrkstflnpedVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Flexible Loop (DISEMBL)
matsssspkshfharsnslpsrphPLASQIDECLSRLRATettsssicnNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKdaltqmkedtqvlestlrrrrgyeprvsnevgaylrsrkkankaihkslrvlktspcsssenETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGnksrkstflnPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Low Complexity Region (SEG)
MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSICNNIIGlsdlydllnnllllPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Disordered region (IsUnstruct)
******************************************TSSSICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDAL***********************************************************ETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNF***
Disordered Region (DISOPRED)
******************LPSRPHPLASQIDECLSRL***************GLSDLYDLLNNLLLLPHTQ**********QVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLR*******RVSNEVGAYLRSRKKANKAIHK*******************MIIILREVEGVTYTVFESLLSY***********************************EFEKVDAALC**********************GELESCTQDLEGGFESLQRRLIKTRVSLLNFLS*
Disordered Region (DISEMBL)
********************SRPHPLASQIDECLSRLRATETTSSSICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Disordered Region (DISPRO)
**************RSNSLPSRPHPLASQIDECLSRLRATETTSSSICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYLSGTKG***QSRWSLVSK*IHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
147781907	297	hypothetical protein VITISV_037143 [Viti	1.0	0.976	0.552	3e-78
225428177	297	PREDICTED: uncharacterized protein LOC10	1.0	0.976	0.542	5e-77
147781908	298	hypothetical protein VITISV_037144 [Viti	1.0	0.973	0.540	2e-76
225428179	298	PREDICTED: uncharacterized protein LOC10	1.0	0.973	0.540	2e-74
225428191	299	PREDICTED: uncharacterized protein LOC10	1.0	0.969	0.551	2e-74
225428187	298	PREDICTED: uncharacterized protein LOC10	1.0	0.973	0.546	3e-74
297744527	294	unnamed protein product [Vitis vinifera]	0.989	0.976	0.538	3e-73
225428181	297	PREDICTED: uncharacterized protein LOC10	0.996	0.973	0.533	1e-72
147862715	298	hypothetical protein VITISV_007204 [Viti	1.0	0.973	0.550	1e-72
147781909	297	hypothetical protein VITISV_037145 [Viti	0.996	0.973	0.530	5e-72

>gi|147781907|emb|CAN69929.1| hypothetical protein VITISV_037143 [Vitis vinifera]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 164/297 (55%), Positives = 214/297 (72%), Gaps = 7/297 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC-NNIIGLSDLYD 59
           MA S  + K+++HARS SLPSRPHPL  + DE L RLRA+E TSSS   +   GL DL+D
Sbjct: 1   MAVSPLNTKAYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHD 60

Query: 60  LLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLR 119
            ++NLLLLP TQQ+LAQ  +++ VD++LD SLRL+D+C TAKDAL Q +E    L+S++R
Sbjct: 61  CVDNLLLLPFTQQSLAQYHHEQWVDELLDGSLRLLDLCDTAKDALLQTREGAHELQSSMR 120

Query: 120 RRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKT--SPCSSS----ENETIAMIIILR 173
           RRRG E  +S+E+G YL SRKK  KAIHK LR LK   + CS S    + ET++ + +LR
Sbjct: 121 RRRGGENGISSEIGKYLTSRKKIKKAIHKVLRNLKGMGNKCSFSALNRDPETLSTVSMLR 180

Query: 174 EVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAAL 233
           EVE VT TV E+LLS ++G   QS +S WSLVSKL+  KRV CE    +++EFEKVDAAL
Sbjct: 181 EVETVTLTVLEALLSSIAGVTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDAAL 240

Query: 234 CSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
           C+L+G+K++    ++ ++VHN + +LE   QDLE G E L RRLIKTRVSLLN LSH
Sbjct: 241 CTLLGHKNKSVNVVHDDNVHNEVAKLELSIQDLEEGIEFLSRRLIKTRVSLLNILSH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428177|ref|XP_002281652.1| PREDICTED: uncharacterized protein LOC100255496 [Vitis vinifera]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/297 (54%), Positives = 213/297 (71%), Gaps = 7/297 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC-NNIIGLSDLYD 59
           MA S  + K+++HARS SLPSRPHPL  + DE L RLRA+E TSSS   +   GL DL+D
Sbjct: 1   MAVSPLNTKAYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHD 60

Query: 60  LLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLR 119
            ++NLLLLP TQQ+LAQ  +++ +D++LD SLRL+D+C TAKDAL Q +E    L+S++R
Sbjct: 61  CVDNLLLLPFTQQSLAQYHHEQWIDELLDGSLRLLDLCDTAKDALLQTREGANELQSSMR 120

Query: 120 RRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKT--SPCSSS----ENETIAMIIILR 173
           RRRG E  +S+E+G YL SRKK  KAIHK+LR LK   + CS S    + ET++ + +LR
Sbjct: 121 RRRGSENGISSEIGKYLTSRKKVKKAIHKALRNLKGMGNKCSFSALNRDPETLSTVRMLR 180

Query: 174 EVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAAL 233
           EVE VT TV E+LLS ++G   QS +S WSLVSKL+  KRV CE    +++EFEKVD AL
Sbjct: 181 EVETVTLTVIEALLSSIAGLTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDTAL 240

Query: 234 CSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
           C+L+G+K++    ++ ++VHN + +LE   QDLE G E L R LIKTRVSLLN LSH
Sbjct: 241 CTLLGHKNKSVNVMHVDNVHNEVAKLELSIQDLEEGIEFLSRHLIKTRVSLLNILSH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781908|emb|CAN69930.1| hypothetical protein VITISV_037144 [Vitis vinifera]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/298 (54%), Positives = 209/298 (70%), Gaps = 8/298 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSICNNII--GLSDLY 58
           MA   S+PK+ +HARS SLPSRPHPL  + DE L RLRA+E TSSS   +    GL D++
Sbjct: 1   MALFPSNPKASYHARSISLPSRPHPLIPEFDELLCRLRASEATSSSSSVSHKLSGLRDVH 60

Query: 59  DLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTL 118
           D +B+LLLLP TQQ LAQ  ++K VD++LD SLRL+D+CG AKD+L Q +E    L+S +
Sbjct: 61  DCVBDLLLLPFTQQTLAQNRHEKWVDELLDGSLRLLDICGAAKDSLLQTREGAHELQSIM 120

Query: 119 RRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK--TSPCSSS----ENETIAMIIIL 172
           RRRRG E  +S+E+G+YL SRKK  K IHK LR LK   S C  S    + + ++M+ +L
Sbjct: 121 RRRRGTENGISSEIGSYLTSRKKVKKTIHKCLRNLKGMKSKCGFSALNKDTKILSMVSML 180

Query: 173 REVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAA 232
           REVE VT TV E+LLS ++G    S  + WSLVSKL+  KRV CE    EI+EFEKVDAA
Sbjct: 181 REVETVTLTVLEALLSLIAGPAAGSKTTGWSLVSKLMQHKRVACEEAEAEISEFEKVDAA 240

Query: 233 LCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
           LC+++ NK++    ++ ++VHN + +LES  QDLE G E L RRLIKTRVSLLN LSH
Sbjct: 241 LCTILANKNKSVNVVHADNVHNEVAKLESSIQDLEEGIEFLSRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428179|ref|XP_002281682.1| PREDICTED: uncharacterized protein LOC100250318 [Vitis vinifera]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/298 (54%), Positives = 208/298 (69%), Gaps = 8/298 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSICNNII--GLSDLY 58
           MA   S+PK+ +HARS SLPSRPHPL  + DE L R+RA+E TSSS   +    GL D++
Sbjct: 1   MALFPSNPKASYHARSISLPSRPHPLIPEFDELLCRVRASEATSSSSSISHKLSGLRDVH 60

Query: 59  DLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTL 118
           D +++LLLLP TQQ LAQ  ++K VD++LD SLRL+D+CG AKD+L Q +E    L+S++
Sbjct: 61  DCVDDLLLLPFTQQTLAQNRHEKWVDELLDGSLRLLDICGAAKDSLLQTREGAHELQSSM 120

Query: 119 RRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK--TSPC----SSSENETIAMIIIL 172
           RRR   E  +S+E+G YL SRKK  K IHK LR LK   S C    S+ + ET++M+ +L
Sbjct: 121 RRRCRTENGISSEIGNYLTSRKKVKKTIHKCLRNLKGMKSKCGFFASNKDTETLSMVSML 180

Query: 173 REVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAA 232
           REVE VT TV E+LLS ++G    S  S WSLVSKL   KRV CE    EI+EFEKVDAA
Sbjct: 181 REVETVTLTVLEALLSLIAGPTAGSKTSGWSLVSKLKQHKRVACEEAEAEISEFEKVDAA 240

Query: 233 LCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
           LC+++ NK++    ++ ++VHN + +LES  QDLE G E L RRLIKTRVSLLN LSH
Sbjct: 241 LCTILANKNKSVNVVHADNVHNEVAKLESSIQDLEEGIEFLSRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428191|ref|XP_002281749.1| PREDICTED: uncharacterized protein LOC100252108 [Vitis vinifera] gi|297744522|emb|CBI37784.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/299 (55%), Positives = 208/299 (69%), Gaps = 9/299 (3%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC---NNIIGLSDL 57
           MA S  +P++ + ARS SL SRPHPL  + DE L RLRA++  SSS     + + GL DL
Sbjct: 1   MAASPLNPRAQYQARSISLSSRPHPLVPEFDEHLCRLRASQAASSSSSSISHRLSGLKDL 60

Query: 58  YDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLEST 117
           +D +++LLLLP TQQALAQ  ++K VD++LD SL+L+DVCGTAKDAL Q +E    L+S+
Sbjct: 61  HDCVDDLLLLPLTQQALAQHRHEKWVDELLDGSLKLLDVCGTAKDALLQTREHAHELQSS 120

Query: 118 LRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKT--SPCSSS----ENETIAMIII 171
           LRRRRG E  +S EVG YL SRKK  KAIHK+L  LK+    CS S    + +T++M+ +
Sbjct: 121 LRRRRGGENGISTEVGEYLTSRKKVKKAIHKALSNLKSMEKKCSFSPLNKDPKTLSMVYM 180

Query: 172 LREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDA 231
           LREVE +T TV ESLLS ++   GQS  S WSLVSKL+H KRV CE  AI + EFEK+DA
Sbjct: 181 LREVEALTLTVLESLLSSIARATGQSKPSGWSLVSKLMHHKRVACEDAAINLTEFEKMDA 240

Query: 232 ALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
           AL  LIG K++    +   ++ N LG+LES  QDLE G E L R LIKTRVSLLN LSH
Sbjct: 241 ALSILIGLKTKSVNLVQIHNMQNELGKLESSIQDLEEGIELLSRCLIKTRVSLLNTLSH 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428187|ref|XP_002281737.1| PREDICTED: uncharacterized protein LOC100257230 [Vitis vinifera] gi|297744524|emb|CBI37786.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 163/298 (54%), Positives = 208/298 (69%), Gaps = 8/298 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC--NNIIGLSDLY 58
           MA S  + KS +H RS SLPSRPHPL  + DE L RL+  E+T SS    + + GL D++
Sbjct: 1   MAFSPLNTKSQYHVRSISLPSRPHPLIPEFDEHLCRLKVPESTCSSSSISHKLSGLKDVH 60

Query: 59  DLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTL 118
           D +++LLLLP TQQALAQ C +K VD++L+ SL+L+DVCGTAKDAL Q ++    L+S++
Sbjct: 61  DCVDDLLLLPLTQQALAQNCLEKWVDELLEGSLKLLDVCGTAKDALLQTRQHAYELQSSI 120

Query: 119 RRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK--TSPCSSS----ENETIAMIIIL 172
           RRRRG +  +S EV  YL SRKK  KAIHK+L+ LK   + CS S    + ETI+M+ +L
Sbjct: 121 RRRRGGKNGISTEVEEYLTSRKKVVKAIHKALKTLKGMENKCSFSPLNKDPETISMVSML 180

Query: 173 REVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAA 232
           REVE VT TV ESLLS ++G   +S  S WSLVS L+H KRV  E  A++++EFEKVDAA
Sbjct: 181 REVETVTVTVLESLLSSIAGATARSKPSGWSLVSTLMHQKRVAFEDAAVDLSEFEKVDAA 240

Query: 233 LCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
           L  LIG+K R    ++ + V N L +LES  QDLE G E L RRLIKTRVSLLN LSH
Sbjct: 241 LYPLIGHKGRSVNLVHVDRVRNELEKLESSIQDLEEGIEFLPRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744527|emb|CBI37789.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/297 (53%), Positives = 208/297 (70%), Gaps = 10/297 (3%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC-NNIIGLSDLYD 59
           MA S  + K+++HARS SLPSRPHPL  + DE L RLRA+E TSSS   +   GL DL+D
Sbjct: 1   MAVSPLNTKAYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHD 60

Query: 60  LLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLR 119
            ++NLLLLP TQQ+LAQ  +++ +D++LD SLRL+D+C TAKDAL Q +E    L+S++R
Sbjct: 61  CVDNLLLLPFTQQSLAQYHHEQWIDELLDGSLRLLDLCDTAKDALLQTREGANELQSSMR 120

Query: 120 RRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK--TSPCSSS----ENETIAMIIILR 173
           RRRG E  +S+E+G YL SRKK  KAIHK+LR LK   + CS S    + ET++ + +LR
Sbjct: 121 RRRGSENGISSEIGKYLTSRKKVKKAIHKALRNLKGMGNKCSFSALNRDPETLSTVRMLR 180

Query: 174 EVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAAL 233
           EVE VT TV E+LLS ++G   QS +S WSLVSKL+  KRV CE    +++EFEKVD AL
Sbjct: 181 EVETVTLTVIEALLSSIAGLTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDTAL 240

Query: 234 CSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
                 K+     ++ ++V N LG+LES  QDLE G E L RRLIKTRVSLLN L+H
Sbjct: 241 VPF---KAFNQNQVHVDNVQNKLGKLESSIQDLEEGLEFLSRRLIKTRVSLLNILNH 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428181|ref|XP_002281692.1| PREDICTED: uncharacterized protein LOC100245194 [Vitis vinifera]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/296 (53%), Positives = 204/296 (68%), Gaps = 7/296 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC-NNIIGLSDLYD 59
           MA S  + K+ +HARS SLPSRPHPL  + DE L RLRA+E TSSS   + + GL DL+D
Sbjct: 1   MAVSPLNTKACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHD 60

Query: 60  LLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLR 119
            +++LLL+P TQQ LAQ  +++ VD++LD SLRL+D+C TAKDAL Q +E  Q L+S +R
Sbjct: 61  CVDDLLLMPLTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMR 120

Query: 120 RRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK--TSPCSSS----ENETIAMIIILR 173
           RRRG E  +SNE+  YL SRKK  KAIHK+LR L      C  S    + ET++M+ +LR
Sbjct: 121 RRRGSENGISNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLR 180

Query: 174 EVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAAL 233
           EVE +T TV  +LLS ++G   QS +S WSLVSKL+  KRV CE    +  EFE VDAAL
Sbjct: 181 EVETITLTVLGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAAL 240

Query: 234 CSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLS 289
           C+++ NK++    ++ +DVHN LG+LE    DLE   E L RRLIKTRVSLLN LS
Sbjct: 241 CTILCNKNKSVNLVHADDVHNELGKLELSIHDLEEEIELLSRRLIKTRVSLLNILS 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862715|emb|CAN81477.1| hypothetical protein VITISV_007204 [Vitis vinifera]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/298 (55%), Positives = 196/298 (65%), Gaps = 8/298 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSS--ICNNIIGLSDLY 58
           MA+SS  PK+ +HARS SLPSRPHPL  QID  L  LRA+E TSSS  I + +  L +LY
Sbjct: 1   MASSSPIPKTSYHARSISLPSRPHPLIPQIDAHLCILRASEATSSSSSITDKLSSLENLY 60

Query: 59  DLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTL 118
           D + NLLLLP ++QAL Q  N+K V++V D  L L+DVC  A DAL Q KE  Q L+STL
Sbjct: 61  DCMENLLLLPLSRQALVQHQNQKWVNEVADGYLLLLDVCSVAGDALLQTKECVQELQSTL 120

Query: 119 RRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTS------PCSSSENETIAMIIIL 172
           RRR   E   +NEV  YL SRKK  K I  SLR LK+         S  E ET+A++ IL
Sbjct: 121 RRRPYGEHGAANEVAEYLASRKKVKKVISNSLRDLKSKQIKCDFSISEKEPETVALVCIL 180

Query: 173 REVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAA 232
           REVE  T TV ESLLS ++G K QS   +WSLVS+L+H+KRV  E E  E  EFEKVDAA
Sbjct: 181 REVEVATLTVLESLLSSIAGPKMQSKTRKWSLVSRLMHSKRVESEEEKAEFGEFEKVDAA 240

Query: 233 LCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
             + I  K+ KS  +  EDV N+LG LE    DL+GG  SL RRLIKTRVSLLN L+H
Sbjct: 241 FQTHISQKTSKSFNIKAEDVQNLLGNLELSIHDLDGGVGSLFRRLIKTRVSLLNILNH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781909|emb|CAN69931.1| hypothetical protein VITISV_037145 [Vitis vinifera]

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 157/296 (53%), Positives = 203/296 (68%), Gaps = 7/296 (2%)

Query: 1   MATSSSSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSIC-NNIIGLSDLYD 59
           MA S  + K+ +HARS SLPSRPHPL  + DE L RLRA+E TSSS   + + GL DL+D
Sbjct: 1   MAVSPLNTKACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHD 60

Query: 60  LLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLR 119
            +++LLL+P TQQ LAQ  +++ VD++LD SLRL+D+C TAKDAL Q +E  Q L+S + 
Sbjct: 61  CVDDLLLMPLTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMX 120

Query: 120 RRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK--TSPCSSS----ENETIAMIIILR 173
           RRRG E  +SNE+  YL SRKK  KAIHK+LR L      C  S    + ET++M+ +LR
Sbjct: 121 RRRGSENGISNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLR 180

Query: 174 EVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAAL 233
           EVE +T TV  +LLS ++G   QS +S WSLVSKL+  KRV CE    +  EFE VDAAL
Sbjct: 181 EVETITLTVLGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAAL 240

Query: 234 CSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLS 289
           C+++ NK++    ++ +DVHN LG+LE    DLE   E L RRLIKTRVSLLN LS
Sbjct: 241 CTILCNKNKSVNLVHADDVHNELGKLELSIHDLEEEIELLSRRLIKTRVSLLNILS 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2827681	263	AT2G17080 "AT2G17080" [Arabido	0.717	0.790	0.450	1.9e-42
TAIR|locus:2827661	263	AT2G17070 "AT2G17070" [Arabido	0.717	0.790	0.446	4.6e-41
TAIR|locus:2132826	253	AT4G35200 "AT4G35200" [Arabido	0.703	0.806	0.416	2.1e-36
TAIR|locus:2132831	250	AT4G35210 "AT4G35210" [Arabido	0.689	0.8	0.418	5.1e-35
TAIR|locus:2081800	277	AT3G51400 "AT3G51400" [Arabido	0.906	0.949	0.319	2.9e-25
TAIR|locus:2127928	284	AT4G35690 "AT4G35690" [Arabido	0.893	0.911	0.281	6.1e-23
TAIR|locus:2127958	283	AT4G35710 "AT4G35710" [Arabido	0.893	0.915	0.303	7.8e-23
TAIR|locus:2827911	292	AT2G17680 "AT2G17680" [Arabido	0.903	0.897	0.308	9e-22
TAIR|locus:2128008	288	AT4G35660 "AT4G35660" [Arabido	0.920	0.927	0.307	2.5e-19
TAIR|locus:2128033	503	AT4G35680 [Arabidopsis thalian	0.958	0.552	0.294	1.8e-18

TAIR|locus:2827681 AT2G17080 "AT2G17080" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 101/224 (45%), Positives = 143/224 (63%)

Query:    12 FHARSNSLPSRPHPLASQIDECLSRLRATE----TTSSSICNNIIGXXXXXXXXXXXXXX 67
             FH RSNS PSR HP A+ +DE L+RLR++E    ++SSSIC  +                
Sbjct:     5 FHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASSSSSSSICQRLDNLQELHESLDKLISR 64

Query:    68 PHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPR 127
             P TQQAL+QE NKK V+ +LD SLR++D+C  +KDAL++MKE    ++S LRR+RG    
Sbjct:    65 PVTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEMKEGLMEIQSILRRKRG---D 121

Query:   128 VSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLL 187
             +S EV  YL SRK   K+  K  + LK +    + ++T+A   +  E E +T ++F+SLL
Sbjct:   122 LSEEVKKYLTSRKSLKKSFQKVQKSLKVTQAEDNNDDTLA---VFGEAEAITLSLFDSLL 178

Query:   188 SYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDA 231
             SY+SG+K  S   +WS+VSKL++ K+VTCEA+    NEF KVD+
Sbjct:   179 SYMSGSKTCS---KWSVVSKLMNKKKVTCEAQE---NEFTKVDS 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827661 AT2G17070 "AT2G17070" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 100/224 (44%), Positives = 139/224 (62%)

Query:    12 FHARSNSLPSRPHPLASQIDECLSRLRATETTS----SSICNNIIGXXXXXXXXXXXXXX 67
             FH RS+S PS PHP A+ +DE L+RLR++E TS    SSIC  +                
Sbjct:     5 FHVRSHSYPSIPHPQAAHVDEQLARLRSSEETSTSSSSSICQRLDNLQELHESLDKLIRL 64

Query:    68 PHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPR 127
             P TQQAL QE NKK V+ +LD SL+++DVC  +KDAL+QMKE    ++S LRR+RG    
Sbjct:    65 PVTQQALGQEKNKKDVEQLLDGSLKILDVCNISKDALSQMKEGLMEIQSILRRKRG---D 121

Query:   128 VSNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLL 187
             +S EV  YL SRK   K   K  + LK +    ++++++A   +  E E VT  +F+SL 
Sbjct:   122 LSGEVKKYLASRKSFKKTFQKVQKSLKAAQAEDNKDKSLA---VFGEAEAVTIAMFDSLF 178

Query:   188 SYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDA 231
             SY+SG+K  S   +WS+VSKL++ K++TCEA+    NEF KVD+
Sbjct:   179 SYMSGSKTCS---KWSVVSKLMNKKKITCEAQE---NEFTKVDS 216

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132826 AT4G35200 "AT4G35200" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 92/221 (41%), Positives = 135/221 (61%)

Query:    12 FHARSNSLPSRPHPLASQIDECLSRLRATET-TSSSICNNIIGXXXXXXXXXXXXXXPHT 70
             FH RSNS PSR HP A+ +DE L+RLR++++ +SSSIC  +                  T
Sbjct:     5 FHVRSNSYPSRQHPQAAHVDEQLTRLRSSDSASSSSICQRLSNLQDLHDSLEKMIRLSVT 64

Query:    71 QQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSN 130
               AL+Q+    Q++ +LD SLR++D+C  AKDA++QMKE    ++S LRR+ G    +S 
Sbjct:    65 NLALSQD----QIEKLLDGSLRILDLCNIAKDAISQMKEGLMEIQSILRRKPG---DLSG 117

Query:   131 EVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYL 190
             EV  YL SRK   K++ K ++ LK   C S ++ T A +++    E VT  +FESL S++
Sbjct:   118 EVKKYLVSRKFLKKSLQKVIKSLKV--CQSKDS-TNASLVVFGRAEAVTMALFESLFSFM 174

Query:   191 SGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDA 231
             SG+K      +WSLVSK++   +VTCEAEA   NEF ++D+
Sbjct:   175 SGSKACG---KWSLVSKMMSQNKVTCEAEA---NEFTRIDS 209

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132831 AT4G35210 "AT4G35210" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 92/220 (41%), Positives = 134/220 (60%)

Query:    12 FHARSNSLPSRPHPLASQIDECLSRLRATET-TSSSICNNIIGXXXXXXXXXXXXXXPHT 70
             FH RS+S PSR HP A+ +DE L+RLR++ T +SSSIC  +                  T
Sbjct:     5 FHVRSSSYPSRQHPQAAHVDEQLTRLRSSGTASSSSICQRLSNLQDLHDSLEKMIRLSVT 64

Query:    71 QQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSN 130
              QAL+Q+    Q++ +LD S++++D+C  +KD L+QMKE  + ++S +RR+RG    +S 
Sbjct:    65 NQALSQD----QIEKLLDGSIKILDLCSISKDGLSQMKESLKEIQSIVRRKRG---DLSA 117

Query:   131 EVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYL 190
             EV  YL SRK   K+  K L+ LKTS    ++N+ +A   +  E E VT  +FESL S++
Sbjct:   118 EVKKYLASRKFLKKSFEKVLKSLKTS---QNKNDALA---VFGEAETVTIALFESLFSFM 171

Query:   191 SGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVD 230
             SG+K      +WSLVSK++   + TCEAEA   NEF +VD
Sbjct:   172 SGSKACG---KWSLVSKMMSQSKGTCEAEA---NEFTRVD 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2081800 AT3G51400 "AT3G51400" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 91/285 (31%), Positives = 144/285 (50%)

Query:    12 FHARSNSLPSRPHPLA-SQIDECLSRLRATETTSSSICNNIIGXXXXXXXXX-XXXXXPH 69
             +H RS+SLP+R HP   +QI + L++LRA +  S S+ +N+                 PH
Sbjct:     5 YHVRSSSLPARLHPHGLNQIQQLLNKLRADDNNSLSLLSNLYDSVSHLFNDSPSSLLVPH 64

Query:    70 TQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRR-GYEPRV 128
                             +LD SL  +D+C   +D   ++K+  + L S  RRRR   +  +
Sbjct:    65 ----------HSFFTHLLDLSLLHLDLCSKLRDITCRIKDCLRDLRSAFRRRRHSGDSTI 114

Query:   129 SNEVGAYLRSRKKANKAIHKSLRVLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLS 188
                V A++RSRK  +K I K L +LK +  SSSE+    +I +L++V   T   F ++L 
Sbjct:   115 RCHVKAFIRSRKAVHKDIAKLLLLLKQTGLSSSESSH-PLITLLQQVCSQTCQTFRTVLL 173

Query:   189 YLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEI---NEFEKVDAALCSL-IGNKSRKS 244
              LS    +   S+W+LV+KL+  K VT  +  +     NEF+ +D  L    +  + +K 
Sbjct:   174 SLSTAVPKPRPSKWALVTKLV-IKNVTSTSGQVRTGHRNEFQMMDEELRRFSMAEEIKKD 232

Query:   245 TFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLS 289
                +   + N L +++   +DLE   E L RR+I+ RVSLLN LS
Sbjct:   233 RIKSM--ITN-LDKVDVAVEDLEESLERLYRRMIQARVSLLNILS 274

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2127928 AT4G35690 "AT4G35690" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 82/291 (28%), Positives = 140/291 (48%)

Query:    15 RSNSLPSRPHPLASQIDECLSRLRATET---TSSSICNNIIGXXXXXXXXXXXXXXPHTQ 71
             RS SLPS  HP  + I+E L++++   T   +S S+   + G                TQ
Sbjct:    11 RSISLPSSSHPSTTGIEESLNKVKTINTMTGSSESVLMGLEGLEELYNCTEDFLKMGSTQ 70

Query:    72 QALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRR--GYEPRVS 129
             + ++     + ++++LD SLRLMD+C  ++D + + +E  + ++S +RR++  G E ++ 
Sbjct:    71 RVMSSSDGSEFMEEMLDGSLRLMDICSVSRDLMVETQEHVRGVQSCVRRKKVVGGEDQLD 130

Query:   130 NEVGAYLRSRKKANKAIHKSLRVLK--------TSPCSSSENETIAMIII--LREVEGVT 179
               V  Y+  RK   K   + L  LK        +S  ++ E E   ++++  +R+V  V+
Sbjct:   131 VAVAGYVGFRKNMRKEAKRLLGSLKNIDGGLSSSSSVNNGEQEEHLVVVVDAMRQVVSVS 190

Query:   180 YTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGN 239
               V  S L +LSG +  + +S+ + V K    K+     E  + NE E +D  +      
Sbjct:   191 VAVLRSFLEFLSGRRQSNIKSKLASVLK----KKKVHHVEETK-NELENLDLEI------ 239

Query:   240 KSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
                   F +  D+   L E+E      E   E L RRLI+TR SLLN +SH
Sbjct:   240 ------FCSRNDLQKKLEEVEMSIDGFEKKLEGLFRRLIRTRASLLNIISH 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127958 AT4G35710 "AT4G35710" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 88/290 (30%), Positives = 140/290 (48%)

Query:    15 RSNSLPSRPHPLASQIDECLSRLRATETT---SSSICNNIIGXXXXXXXXXXXXXXPHTQ 71
             RS SLPSR  P  S ++E L++++   TT   S SI   + G                 Q
Sbjct:    11 RSISLPSRSQPSTSGLEESLNKIKTINTTTGSSESILMGLAGLEELYIFLEEFLKMGSKQ 70

Query:    72 QALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRR----GYEPR 127
             + ++     + ++++LD SLRLMD+C  ++D + +  E  + ++S +RR++    G   +
Sbjct:    71 RVMSSG-GSEFMEEMLDGSLRLMDICSVSRDLMVETHEHVRGVQSYVRRKKVSGGGGGDK 129

Query:   128 VSNEVGAYLRSRKKANKAIHKSLRVLK-----TSPCSSS-ENET-IAMIIILREVEGVTY 180
             +   V  Y+  RK   K   K L  LK     T  C +  E+E  +A+I  +R V  V+ 
Sbjct:   130 IDVAVSDYVGFRKNMRKEAKKLLGSLKKVDGGTRSCDNDHEDEQLVAVIDRVRRVVSVSV 189

Query:   181 TVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNK 240
              V +S L  LS  K        ++ SKL    ++  +  A   N  E +D+A+    G+ 
Sbjct:   190 VVLKSFLELLSRRKS-------NIKSKLASVLKMKKDNHAPAKNVLETLDSAI---FGD- 238

Query:   241 SRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLSH 290
                  FL+ +D+ N L E+E C    E   E L RRLI+TR S+LN +SH
Sbjct:   239 -----FLSHDDLQNELEEVEMCIGGFERNLEGLFRRLIRTRASILNIISH 283

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2827911 AT2G17680 "AT2G17680" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 92/298 (30%), Positives = 145/298 (48%)

Query:    13 HARSNSLPSRPHPLASQIDECLSRLRATETTSS-----SICNNIIGXXXXXXXXXXXXXX 67
             H RS SL SR HP  + I+E L +   T  TS+     S+ + + G              
Sbjct:     9 HVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSEDLLKM 68

Query:    68 PHTQQALA--QECNKKQ-------VDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTL 118
               TQ+ L+   E  KK+       ++++LD SLRLMD+C  ++D + +  E    L+S +
Sbjct:    69 GSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLGLQSCV 128

Query:   119 RRRRGYEPRVSNEVGAYLRSRKKANKAIH--KSLRV-LKTSPCSSSENETI---AMIIIL 172
             RRR+  +  VS  VG     RK+  K +   K++ V L        ++  I   A+I  +
Sbjct:   129 RRRKDVD--VSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDIHFLAVIHAM 186

Query:   173 REVEGVTYTVFESLLSYLSGTK-GQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDA 231
             R V  +T +V +S   +LSG + G   +S+ +LV   +  K+     + ++ NE E VD+
Sbjct:   187 RRVVYMTVSVLKSFFEFLSGRQNGNDVRSKLALV---LMNKKFHDHDKMVK-NELENVDS 242

Query:   232 ALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFLS 289
             A+C   G+       ++ +D+H  L E+E      E   E L R LIKTR SLLN +S
Sbjct:   243 AIC---GDS------ISHDDLHEKLEEVEVWIGKFEKSLEGLFRGLIKTRASLLNIIS 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2128008 AT4G35660 "AT4G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 95/309 (30%), Positives = 144/309 (46%)

Query:     1 MATSSSSP--KSHFHARSNSLPSRP-HPLASQIDECLSRLRATETTSSSICNNIIGXXXX 57
             MA SSSS    +H  ARS SLP+R  HP A +++E L +++A  ++SS+     +G    
Sbjct:     1 MAESSSSSVATTHVPARSISLPTRLIHPKAQRVEEELKKIQALNSSSSASSRIQLGLAKL 60

Query:    58 XXXXXXXX----XXPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQV 113
                           P  QQAL    N+K V+D LD S+ L+DV    +D +  + E  Q 
Sbjct:    61 VELYDFVNEQVISSPQGQQALRLCRNRKLVEDALDESIVLLDVSDFTRDLIGTLMEHIQE 120

Query:   114 LESTLRRRRGYEPRVSNEVGAYLRSRKKAN-KAIH--KSLRVLKTSPC------SSSENE 164
             L+S LRRRRG    V +E+ +Y+   KK+  +A    KSL   +T         S   +E
Sbjct:   121 LQSALRRRRGNLSSVQSEIRSYISFHKKSKTEAARQVKSLARRQTKKKAWVIKQSGGLDE 180

Query:   165 TIAMII-ILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEI 223
               +M+  ILR+    T ++ +SLL +LS T G++ + +            + C   ++  
Sbjct:   181 HSSMVSNILRQSNASTISILQSLLQFLS-TSGENNEKK---------NGEIGCVDNSMIR 230

Query:   224 NEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEG---GFESLQRRLIKT 280
             + F ++       IG K  K       D   +LG L      LE        L RRLI+ 
Sbjct:   231 SFFGRI-------IGRKMVKEI-----DAQTILGRLAMVNVSLEAIKDELSYLSRRLIQH 278

Query:   281 RVSLLNFLS 289
             R SLLN ++
Sbjct:   279 RASLLNIVT 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2128033 AT4G35680 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 90/306 (29%), Positives = 139/306 (45%)

Query:     6 SSPKSHFHARSNSLPSRPHPLASQIDECLSRLRATETTSSSICNN--------IIGXXXX 57
             S+  +H   RS SLPSR HPL+ ++   LSRL     +SSSI  +        ++G    
Sbjct:    10 SNQTTHQPVRSASLPSRIHPLSVKLRTALSRLSIWRRSSSSISVSASFGYETVLVGLVNL 69

Query:    58 XXXXX---XXXXXPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVL 114
                          P+ +  L      K +D+ LD S+ L+DV    ++ +  M+E    L
Sbjct:    70 TELYGCVHELLESPYVKHTLLHHQEGKLLDESLDGSVLLLDVYEGTREVIVAMREHVTNL 129

Query:   115 ESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLK---TSPCSSS--ENETIAMI 169
             +S LRR+   E     E  AY   RKKA K I K +  LK   T   S++  ++  IA  
Sbjct:   130 KSALRRKGSLE----KEAKAYFNLRKKAKKEISKQINALKKMETRDISTNTDQDSAIAST 185

Query:   170 IILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVT---CEAEAIEINEF 226
              +LRE   +T ++F  LL +LS        + +     L+    V+    +   I I E 
Sbjct:   186 SVLRETIQITVSMFRHLLLFLSTIPPPPSPAIFKTTIGLLSIPFVSPSLSDKSLILIKEM 245

Query:   227 EKVDAALCSLIGNKSRKSTFLNPEDVHN--MLGEL-ESCTQDLEGGFESLQRRLIKTRVS 283
             + +D      I + SRK+ F   E + N  M  ++ E   +DLE   +S+ + L+K RV 
Sbjct:   246 KSLDDVFLGSILD-SRKTLF-EVETMENEKMRRDVVEDGFRDLEAELDSVSKCLVKNRVL 303

Query:   284 LLNFLS 289
              LN L+
Sbjct:   304 FLNILN 309

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
pfam03087	230	pfam03087, DUF241, Arabidopsis protein of unknown	2e-42

>gnl|CDD|217360 pfam03087, DUF241, Arabidopsis protein of unknown function

 Score =  145 bits (367), Expect = 2e-42
 Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 19/243 (7%)

Query: 49  NNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMK 108
           + + GL +LYD +  LL    TQQ L+     K  +++LD SLRL+D+C  ++D + ++K
Sbjct: 1   DGLSGLKELYDCVEELLRSSPTQQQLSSLQ-SKFFEELLDGSLRLLDICSVSRDLIVEIK 59

Query: 109 EDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHK---SLRVLKTSPCS--SSEN 163
           E  + L+S LRR+R  +  V  EV AY+RSRKK  K I K   SL+ + T   +    + 
Sbjct: 60  EHVRELQSALRRKRSGDLEV--EVKAYVRSRKKLKKEIAKLLNSLKKMDTKVWNNNGDQE 117

Query: 164 ETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEI 223
           +  A++ +L E   VT +VF S+L +LS TK  S+  + SL+S+   +K+   ++     
Sbjct: 118 DASAVLDVLEETVSVTVSVFRSVLLFLSTTK-TSFDIKSSLLSEKK-SKKGGSQSSLSIR 175

Query: 224 NEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVS 283
           +E  ++D            +      +D+   L ELE+  ++LE   ESL RRLI+TRVS
Sbjct: 176 SELSRLDEEK---------RRDNEEVKDILKRLEELENSIEELEDELESLFRRLIQTRVS 226

Query: 284 LLN 286
           LLN
Sbjct: 227 LLN 229

This family represents a number of Arabidopsis proteins. Their functions are unknown. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	99.91
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	93.21

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=100.00  E-value=3.6e-67  Score=475.52  Aligned_cols=226  Identities=50%  Similarity=0.746  Sum_probs=209.9

Q ss_pred             hHHHhhHHHHHhHHHHHcCchhHHHHHHhhhhhhHHHhhhhhhHHHHHhhhHHHHHHhhhHHHHHHHHHHhhcCCCCchh
Q 048208           49 NNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRV  128 (290)
Q Consensus        49 ~~L~~L~~l~~~v~~Ll~lP~tQ~aL~~~~~~k~vee~LD~Sl~LLDvC~~~rd~l~~lke~~~eLqsaLRRr~g~~~~~  128 (290)
                      +||++|.|||+|++|||++|+|||+|++++ +||||++|||||+|||+||+|||+|++||||++|||++||||++|+  +
T Consensus         1 dgL~~L~~Ly~~~~ell~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~~~--~   77 (231)
T PF03087_consen    1 DGLSGLKDLYECLEELLQLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDDGS--I   77 (231)
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--H
Confidence            589999999999999999999999999999 9999999999999999999999999999999999999999998554  8


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcC-C-C--CCCch-hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcCCCchh
Q 048208          129 SNEVGAYLRSRKKANKAIHKSLRVLKTS-P-C--SSSEN-ETIAMIIILREVEGVTYTVFESLLSYLSGTKGQSYQSRWS  203 (290)
Q Consensus       129 ~~~v~~y~~~rkk~kK~i~K~l~~Lk~~-k-~--~~~d~-~~~~~v~~l~ev~~~tisvf~slls~~s~~~~~~~~~~Ws  203 (290)
                      +++|++|+++|||++|+|.|+++++|++ + .  .+.++ +.+.++++++||+.+|+++|+++++|+|+|..++++++||
T Consensus        78 ~~~i~sy~~~rKk~kK~i~K~~~~lk~~~~~~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~~~~~~ws  157 (231)
T PF03087_consen   78 ESEIASYIRSRKKAKKEIAKLLRSLKRMSNKSSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKKSKSSKWS  157 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchh
Confidence            9999999999999999999999999999 3 1  23333 5899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccccchhhhhhhhhhHHHHHHHHhhhccCCCCCCCCChHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHh
Q 048208          204 LVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVS  283 (290)
Q Consensus       204 ~vskl~~~~~v~~~~~~~~~nEl~~vDaal~~l~~~~~~~~~~~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVs  283 (290)
                      +|++++++++ .|+..+...||++++|+++..       +  .+.+++++++||+||.||++||+|+|+|||+|||||||
T Consensus       158 lvsk~~~~~~-~~~~~~~~~~e~~~~d~~~~~-------~--~e~~~~~~~~Le~LE~~Ie~lE~glE~vFR~LIktRVS  227 (231)
T PF03087_consen  158 LVSKLMQKKR-SCDSSEENRNEFEKVDAALKS-------D--EEEVQNAQKRLEELEECIEELEEGLECVFRRLIKTRVS  227 (231)
T ss_pred             HHHHHHhccc-ccchhHHHHHHHHHHHHHhhh-------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999885 566666699999999999852       1  57899999999999999999999999999999999999


Q ss_pred             hhhc
Q 048208          284 LLNF  287 (290)
Q Consensus       284 LLNi  287 (290)
                      ||||
T Consensus       228 LLNI  231 (231)
T PF03087_consen  228 LLNI  231 (231)
T ss_pred             HhcC
Confidence            9998

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=99.91  E-value=4.7e-23  Score=197.76  Aligned_cols=255  Identities=19%  Similarity=0.248  Sum_probs=192.7

Q ss_pred             CCChhhHHHHHH-hhhhcc---------CCchhHHhHHHhhHHHHHhHHHHHcCchhHH-HHHHhhhhhhHHHhhhhhhH
Q 048208           24 HPLASQIDECLS-RLRATE---------TTSSSICNNIIGLSDLYDLLNNLLLLPHTQQ-ALAQECNKKQVDDVLDRSLR   92 (290)
Q Consensus        24 hP~~~~~e~~L~-~Lr~~~---------sssssi~~~L~~L~~l~~~v~~Ll~lP~tQ~-aL~~~~~~k~vee~LD~Sl~   92 (290)
                      .|.+..||.++. +|....         -|.+||...|..+...|+.+..||  |..+. +++..+.+|||++|||++|+
T Consensus        36 ~~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr~li--~~~~~~~~s~~~~dk~v~eylD~sVK  113 (389)
T PF05633_consen   36 EAELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFRALI--TNLRDLPLSKPPDDKWVDEYLDRSVK  113 (389)
T ss_pred             hhhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHHHHH--hcccccccCCchHHHHHHHHHHHHHH
Confidence            446788999888 677652         146899999999999999999998  33332 56667899999999999999


Q ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC------------C--
Q 048208           93 LMDVCGTAKDALTQMKEDTQVLESTLRRRRGYEPRVSNEVGAYLRSRKKANKAIHKSLRVLKTSP------------C--  158 (290)
Q Consensus        93 LLDvC~~~rd~l~~lke~~~eLqsaLRRr~g~~~~~~~~v~~y~~~rkk~kK~i~K~l~~Lk~~k------------~--  158 (290)
                      +|||||+++|.|.+++++..-+|.|++-.+..++.   .-+.|.|+||    .+..+...|+..+            +  
T Consensus       114 lLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~---~~~~~rRAr~----aL~dl~~~~~~~~~~~~~~~~~rnrs~~  186 (389)
T PF05633_consen  114 LLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPL---GEGQLRRARK----ALSDLKIAMLDDKDSGSSGGSHRNRSFG  186 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHH----HHHHHHHHHhcccccCcccccccccccc
Confidence            99999999999999999999999999998754221   2235767766    5555554442210            0  


Q ss_pred             ---------CC-------------------------------------C---chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048208          159 ---------SS-------------------------------------S---ENETIAMIIILREVEGVTYTVFESLLSY  189 (290)
Q Consensus       159 ---------~~-------------------------------------~---d~~~~~~v~~l~ev~~~tisvf~slls~  189 (290)
                               .+                                     +   ...+..+++.+|.+..+|++|+-.+...
T Consensus       187 r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA  266 (389)
T PF05633_consen  187 RSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAA  266 (389)
T ss_pred             cccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHe
Confidence                     00                                     0   0112357889999999999998888876


Q ss_pred             hhcc-c------C-CcCCCchhHHHHHhhhccccch-------hhhhhhhhhHHHHHHHHhhhccC-CC-CC---C----
Q 048208          190 LSGT-K------G-QSYQSRWSLVSKLIHTKRVTCE-------AEAIEINEFEKVDAALCSLIGNK-SR-KS---T----  245 (290)
Q Consensus       190 ~s~~-~------~-~~~~~~Ws~vskl~~~~~v~~~-------~~~~~~nEl~~vDaal~~l~~~~-~~-~~---~----  245 (290)
                      ++.+ .      . .|++..|+.-...+|.+ |.-|       +....++|++.||++.+.|++-. +. .|   |    
T Consensus       267 ~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~r-I~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~e  345 (389)
T PF05633_consen  267 FPCQDRGLQVHLSAVPRQFSWAPSFISLQER-INEEIKKKERKGSCGLLKELQQVEASVRELHELIDSFQFPLEEEKEEE  345 (389)
T ss_pred             eecCCccccCCCCCCccccccchHHHHHHHH-HHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHH
Confidence            6653 2      2 47788999888888865 3222       11256899999999999887621 11 11   1    


Q ss_pred             -CCChHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhhhcc
Q 048208          246 -FLNPEDVHNMLGELESCTQDLEGGFESLQRRLIKTRVSLLNFL  288 (290)
Q Consensus       246 -~~~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVsLLNil  288 (290)
                       .+.|+++.+..+.|++++++||.+++.||++++.+|..+|+.|
T Consensus       346 v~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l  389 (389)
T PF05633_consen  346 VREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL  389 (389)
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence             3468899999999999999999999999999999999999976

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=93.21  E-value=8.6  Score=37.21  Aligned_cols=42  Identities=19%  Similarity=0.378  Sum_probs=39.3

Q ss_pred             hhHHHhhhhhhHHHHHhhhHHHHHHhhhHHHHHHHHHHhhcC
Q 048208           81 KQVDDVLDRSLRLMDVCGTAKDALTQMKEDTQVLESTLRRRR  122 (290)
Q Consensus        81 k~vee~LD~Sl~LLDvC~~~rd~l~~lke~~~eLqsaLRRr~  122 (290)
                      ..|++|.|.|..=+|+|++....+-+.+.+.+-++.+|.+-+
T Consensus        66 ~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~  107 (336)
T PF05055_consen   66 RLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFE  107 (336)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence            479999999999999999999999999999999999998854

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 6e-07
 Identities = 43/285 (15%), Positives = 79/285 (27%), Gaps = 95/285 (33%)

Query: 26  LASQIDECLSRLRATETTSSSICNNIIGLSDLYDLLNNLLLLPHTQQALAQECNKKQV-D 84
           L  QID   +        S    N  + +  +   L  LL     +  L        V  
Sbjct: 205 LLYQIDPNWTSR------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLL 251

Query: 85  DVLD-RSLRLMDV-CGTAKDAL--TQMKEDTQVLESTLRRR-------RGYEPRVSNEVG 133
           +V + ++    ++ C      L  T+ K+ T  L +                P     + 
Sbjct: 252 NVQNAKAWNAFNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 134 AYLRSRKKANKAIHKSLR--VLKTSPCSSSENETIAMIIILREVEGVTYTVFESLLSYLS 191
                 K  +    + L   VL T+P        +++I                      
Sbjct: 308 L-----KYLDCRP-QDLPREVLTTNPR------RLSII---------------------- 333

Query: 192 GTKGQSYQSRWSLVSKLIHTKRVTCEAEAIEINEFEKVDAALCSLIGNKSRK-----STF 246
               +   + W       + K V C+           ++++L  L   + RK     S F
Sbjct: 334 AESIRDGLATWD------NWKHVNCDKLT------TIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 247 LNPEDVH---NMLGEL--ESCTQDLEGGFESLQRRLIKTRVSLLN 286
             P   H    +L  +  +    D+      L +       SL+ 
Sbjct: 382 --PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------SLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 38/268 (14%), Positives = 86/268 (32%), Gaps = 88/268 (32%)

Query: 66  LLPHTQQALAQ--ECN-----------KKQVDDVL------DRSLRLMDVCGTAKDALTQ 106
           +L   + A     +C            K+++D ++        +LRL     + ++ + Q
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 107 ------MKEDTQVLESTLR--------RRRGYEP---RVSNEVGAYLR---SRKKANKAI 146
                 ++ + + L S ++          R Y     R+ N+   + +   SR +    +
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 147 HKSLRVLKTSPCSSSENETIAMIIILREVEGV--TYTVFESLLSY--LSGTKGQSYQSRW 202
            ++L  L+ +             +++  V G   T+   +  LSY        + +   W
Sbjct: 141 RQALLELRPAK-----------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---W 186

Query: 203 SLVSKLIHTKRVTCEAEAIEI--NEFEKVDAALCSLIGNKSRKSTFLNPEDVHNMLGELE 260
                 ++ K        +E+      ++D    S   +    +  L    +   L    
Sbjct: 187 ------LNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAEL---- 234

Query: 261 SCTQDLEGGFESLQRRLIKTRV---SLL 285
                         RRL+K++     LL
Sbjct: 235 --------------RRLLKSKPYENCLL 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00